Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62847.t1 | XP_003608793.1 | 86.1 | 137 | 13 | 1 | 1 | 131 | 1 | 137 | 1.30E-57 | 232.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62847.t1 | Q84W04 | 64.2 | 134 | 42 | 1 | 1 | 128 | 1 | 134 | 7.1e-44 | 177.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62847.t1 | G7JK78 | 86.1 | 137 | 13 | 1 | 1 | 131 | 1 | 137 | 9.6e-58 | 232.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049150 | MS.gene62847 | -0.81504 | 1.13E-51 | -1.69E-46 |
| MS.gene049151 | MS.gene62847 | -0.800581 | 1.35E-48 | -1.69E-46 |
| MS.gene049153 | MS.gene62847 | -0.811173 | 7.99E-51 | -1.69E-46 |
| MS.gene049297 | MS.gene62847 | -0.809991 | 1.44E-50 | -1.69E-46 |
| MS.gene049378 | MS.gene62847 | -0.824727 | 6.90E-54 | -1.69E-46 |
| MS.gene049758 | MS.gene62847 | -0.808763 | 2.64E-50 | -1.69E-46 |
| MS.gene049910 | MS.gene62847 | -0.81935 | 1.22E-52 | -1.69E-46 |
| MS.gene050226 | MS.gene62847 | -0.819168 | 1.34E-52 | -1.69E-46 |
| MS.gene050227 | MS.gene62847 | -0.818137 | 2.29E-52 | -1.69E-46 |
| MS.gene050228 | MS.gene62847 | -0.820832 | 5.57E-53 | -1.69E-46 |
| MS.gene050319 | MS.gene62847 | 0.804256 | 2.36E-49 | -1.69E-46 |
| MS.gene050330 | MS.gene62847 | 0.814615 | 1.41E-51 | -1.69E-46 |
| MS.gene050442 | MS.gene62847 | -0.804017 | 2.64E-49 | -1.69E-46 |
| MS.gene050623 | MS.gene62847 | 0.810688 | 1.02E-50 | -1.69E-46 |
| MS.gene050629 | MS.gene62847 | 0.802153 | 6.42E-49 | -1.69E-46 |
| MS.gene050762 | MS.gene62847 | -0.807953 | 3.93E-50 | -1.69E-46 |
| MS.gene050763 | MS.gene62847 | -0.808212 | 3.46E-50 | -1.69E-46 |
| MS.gene05119 | MS.gene62847 | 0.831517 | 1.60E-55 | -1.69E-46 |
| MS.gene051535 | MS.gene62847 | -0.815242 | 1.02E-51 | -1.69E-46 |
| MS.gene052176 | MS.gene62847 | -0.802374 | 5.78E-49 | -1.69E-46 |
| MS.gene052858 | MS.gene62847 | -0.802723 | 4.90E-49 | -1.69E-46 |
| MS.gene052860 | MS.gene62847 | -0.81397 | 1.95E-51 | -1.69E-46 |
| MS.gene053836 | MS.gene62847 | -0.822395 | 2.42E-53 | -1.69E-46 |
| MS.gene054379 | MS.gene62847 | -0.840803 | 6.98E-58 | -1.69E-46 |
| MS.gene054930 | MS.gene62847 | -0.83781 | 4.17E-57 | -1.69E-46 |
| MS.gene054942 | MS.gene62847 | -0.800982 | 1.12E-48 | -1.69E-46 |
| MS.gene055701 | MS.gene62847 | -0.822035 | 2.94E-53 | -1.69E-46 |
| MS.gene056069 | MS.gene62847 | 0.807961 | 3.91E-50 | -1.69E-46 |
| MS.gene057156 | MS.gene62847 | 0.822628 | 2.14E-53 | -1.69E-46 |
| MS.gene05761 | MS.gene62847 | -0.812658 | 3.79E-51 | -1.69E-46 |
| MS.gene057750 | MS.gene62847 | -0.804052 | 2.60E-49 | -1.69E-46 |
| MS.gene058435 | MS.gene62847 | -0.826102 | 3.26E-54 | -1.69E-46 |
| MS.gene059285 | MS.gene62847 | -0.803254 | 3.81E-49 | -1.69E-46 |
| MS.gene060137 | MS.gene62847 | 0.827793 | 1.29E-54 | -1.69E-46 |
| MS.gene060495 | MS.gene62847 | -0.800743 | 1.25E-48 | -1.69E-46 |
| MS.gene060683 | MS.gene62847 | -0.858199 | 9.71E-63 | -1.69E-46 |
| MS.gene060685 | MS.gene62847 | -0.852971 | 3.25E-61 | -1.69E-46 |
| MS.gene060802 | MS.gene62847 | -0.802843 | 4.63E-49 | -1.69E-46 |
| MS.gene060998 | MS.gene62847 | -0.807516 | 4.87E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62847.t1 | MTR_4g102010 | 91.971 | 137 | 5 | 1 | 1 | 131 | 1 | 137 | 4.64e-87 | 249 |
| MS.gene62847.t1 | MTR_5g011690 | 63.504 | 137 | 44 | 1 | 1 | 131 | 1 | 137 | 2.58e-61 | 184 |
| MS.gene62847.t1 | MTR_7g092530 | 45.217 | 115 | 58 | 1 | 19 | 128 | 27 | 141 | 7.78e-29 | 102 |
| MS.gene62847.t1 | MTR_0311s0030 | 43.548 | 124 | 63 | 2 | 3 | 119 | 4 | 127 | 2.34e-27 | 98.6 |
| MS.gene62847.t1 | MTR_7g074930 | 43.902 | 82 | 40 | 1 | 1 | 76 | 1 | 82 | 3.21e-17 | 72.4 |
| MS.gene62847.t1 | MTR_0311s0030 | 44.048 | 84 | 40 | 2 | 3 | 79 | 4 | 87 | 1.02e-14 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62847.t1 | AT1G12390 | 67.164 | 134 | 38 | 1 | 1 | 128 | 1 | 134 | 4.67e-62 | 186 |
| MS.gene62847.t1 | AT1G12340 | 70.909 | 110 | 32 | 0 | 19 | 128 | 17 | 126 | 3.71e-56 | 171 |
| MS.gene62847.t1 | AT1G62880 | 64.925 | 134 | 41 | 1 | 1 | 128 | 1 | 134 | 5.05e-56 | 171 |
| MS.gene62847.t1 | AT4G12090 | 48.507 | 134 | 63 | 1 | 1 | 128 | 1 | 134 | 2.26e-44 | 142 |
| MS.gene62847.t1 | AT3G12180 | 39.231 | 130 | 73 | 1 | 3 | 126 | 4 | 133 | 1.03e-30 | 107 |
Find 31 sgRNAs with CRISPR-Local
Find 138 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTATTCCTCTCCTTATTT+TGG | 0.153767 | 8.4:+22933676 | MS.gene62847:CDS |
| TCAAGTCACTTACCAAAATA+AGG | 0.225877 | 8.4:-22933688 | None:intergenic |
| ATAAATAAGGATTACAATTA+AGG | 0.272852 | 8.4:-22931523 | None:intergenic |
| GGATTACAATTAAGGCAATA+AGG | 0.316976 | 8.4:-22931515 | None:intergenic |
| TGCGGTTTCTACCTTGTAAC+AGG | 0.332875 | 8.4:+22931837 | MS.gene62847:CDS |
| TGCATCTCGAATAAACAAAA+TGG | 0.334517 | 8.4:+22931782 | MS.gene62847:CDS |
| ATTCGAGATGCAGAATCATA+TGG | 0.395869 | 8.4:-22931771 | None:intergenic |
| ACCAAAATAAGGAGAGGAAT+AGG | 0.409964 | 8.4:-22933677 | None:intergenic |
| GATTACAATTAAGGCAATAA+GGG | 0.439401 | 8.4:-22931514 | None:intergenic |
| TGTAACAGGACACTGGGTTA+TGG | 0.459940 | 8.4:+22931851 | MS.gene62847:CDS |
| AGATATTCAACATGCTCCCT+TGG | 0.463924 | 8.4:+22933610 | MS.gene62847:CDS |
| ATTATTTCAGTTAATGTGCC+TGG | 0.465076 | 8.4:+22931722 | MS.gene62847:intron |
| GATTTATATAATCAAATTCA+AGG | 0.470288 | 8.4:-22931749 | None:intergenic |
| CAGGTTGATCTACACATCAT+TGG | 0.489610 | 8.4:+22933774 | MS.gene62847:intron |
| GATATTCAACATGCTCCCTT+GGG | 0.497374 | 8.4:+22933611 | MS.gene62847:CDS |
| TAAGGCAATAAGGGTGAAGA+AGG | 0.500668 | 8.4:-22931505 | None:intergenic |
| AATCAAATTCAAGGTCTGCC+AGG | 0.521481 | 8.4:-22931740 | None:intergenic |
| GTACAGTCAAGGAAAGCATC+TGG | 0.522881 | 8.4:+22933575 | MS.gene62847:CDS |
| CTACCTTGTAACAGGACACT+GGG | 0.524936 | 8.4:+22931845 | MS.gene62847:CDS |
| TCTACCTTGTAACAGGACAC+TGG | 0.526257 | 8.4:+22931844 | MS.gene62847:CDS |
| TAACCCAGTGTCCTGTTACA+AGG | 0.527314 | 8.4:-22931848 | None:intergenic |
| CTATAATTGTAGTAGAGGTA+AGG | 0.555129 | 8.4:-22931888 | None:intergenic |
| ACAATCTATAATTGTAGTAG+AGG | 0.566636 | 8.4:-22931893 | None:intergenic |
| GTATGGCTGATATATTCGCT+TGG | 0.579050 | 8.4:+22931475 | None:intergenic |
| TCCCTTGGGAAAAGAAGCAA+CGG | 0.596591 | 8.4:+22933625 | MS.gene62847:CDS |
| TTACAAGGTAGAAACCGCAC+AGG | 0.623085 | 8.4:-22931833 | None:intergenic |
| GCAGCTACTGTGATATACTC+AGG | 0.626709 | 8.4:-22931810 | None:intergenic |
| TCACTTACCAAAATAAGGAG+AGG | 0.652566 | 8.4:-22933683 | None:intergenic |
| ACTCTGATCAGGTACAGTCA+AGG | 0.665524 | 8.4:+22933564 | MS.gene62847:intron |
| ATCACAGTAGCTGCCCTGTG+CGG | 0.685904 | 8.4:+22931819 | MS.gene62847:CDS |
| TACAAGGTAGAAACCGCACA+GGG | 0.693755 | 8.4:-22931832 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAACATTATAATTTTTTTGT+AGG | + | chr8.4:22932607-22932626 | MS.gene62847:intron | 10.0% |
| !! | AAGTTGACTAAAAATAAAAA+GGG | - | chr8.4:22931586-22931605 | None:intergenic | 15.0% |
| !! | ATAAATAAGGATTACAATTA+AGG | - | chr8.4:22931526-22931545 | None:intergenic | 15.0% |
| !! | GATTTATATAATCAAATTCA+AGG | - | chr8.4:22931752-22931771 | None:intergenic | 15.0% |
| !! | TAAAAATAGAGGATTAATTA+AGG | + | chr8.4:22932707-22932726 | MS.gene62847:intron | 15.0% |
| !!! | AAATATGACTATTATTTTGA+GGG | - | chr8.4:22933293-22933312 | None:intergenic | 15.0% |
| !!! | TCATTAACAATAAATTTTCA+TGG | - | chr8.4:22931953-22931972 | None:intergenic | 15.0% |
| !! | AAAAACAAAGCTTTACATAA+TGG | - | chr8.4:22931617-22931636 | None:intergenic | 20.0% |
| !! | AAAACAAAGCTTTACATAAT+GGG | - | chr8.4:22931616-22931635 | None:intergenic | 20.0% |
| !! | AGTTGACTAAAAATAAAAAG+GGG | - | chr8.4:22931585-22931604 | None:intergenic | 20.0% |
| !! | TTCTTAGAATCAAAATATCT+AGG | - | chr8.4:22932241-22932260 | None:intergenic | 20.0% |
| !!! | AATATGACTATTATTTTGAG+GGG | - | chr8.4:22933292-22933311 | None:intergenic | 20.0% |
| !!! | AATTGTAATCCTTATTTATC+AGG | + | chr8.4:22931527-22931546 | MS.gene62847:intron | 20.0% |
| !!! | CAAATATGACTATTATTTTG+AGG | - | chr8.4:22933294-22933313 | None:intergenic | 20.0% |
| !!! | CAAGTTGACTAAAAATAAAA+AGG | - | chr8.4:22931587-22931606 | None:intergenic | 20.0% |
| !!! | GGTTTGATTTATAAAAATAG+AGG | + | chr8.4:22932696-22932715 | MS.gene62847:intron | 20.0% |
| !!! | TATAATGTTTTTGAGAAACA+TGG | + | chr8.4:22931991-22932010 | MS.gene62847:intron | 20.0% |
| !!! | TCATACTTTATTTATTTGCA+AGG | + | chr8.4:22932943-22932962 | MS.gene62847:intron | 20.0% |
| ! | AAACAAAGCTTTACATAATG+GGG | - | chr8.4:22931615-22931634 | None:intergenic | 25.0% |
| ! | AAATACAAAGCAGTATCAAA+AGG | - | chr8.4:22933350-22933369 | None:intergenic | 25.0% |
| ! | AATACAAAGCAGTATCAAAA+GGG | - | chr8.4:22933349-22933368 | None:intergenic | 25.0% |
| ! | ACAAAAACTAAACCAATTTG+TGG | - | chr8.4:22932510-22932529 | None:intergenic | 25.0% |
| ! | ACAATCTATAATTGTAGTAG+AGG | - | chr8.4:22931896-22931915 | None:intergenic | 25.0% |
| ! | AGAACTACCAAATTGAAAAT+TGG | - | chr8.4:22932398-22932417 | None:intergenic | 25.0% |
| ! | ATGCAAGAATTGTAAGTTAA+TGG | - | chr8.4:22933745-22933764 | None:intergenic | 25.0% |
| ! | GAACTACCAAATTGAAAATT+GGG | - | chr8.4:22932397-22932416 | None:intergenic | 25.0% |
| ! | GATTACAATTAAGGCAATAA+GGG | - | chr8.4:22931517-22931536 | None:intergenic | 25.0% |
| ! | GTTGACTAAAAATAAAAAGG+GGG | - | chr8.4:22931584-22931603 | None:intergenic | 25.0% |
| ! | TAATAACAAATACTGTTACC+AGG | - | chr8.4:22933545-22933564 | None:intergenic | 25.0% |
| ! | TACAAAAATTGAGATGATGA+TGG | - | chr8.4:22932841-22932860 | None:intergenic | 25.0% |
| ! | TATAAATCAAACCATGACAT+GGG | - | chr8.4:22932689-22932708 | None:intergenic | 25.0% |
| ! | TCTAGTATAATAAAGCCATA+AGG | + | chr8.4:22932484-22932503 | MS.gene62847:intron | 25.0% |
| ! | TTAAAAAAATCGAACCAATC+AGG | + | chr8.4:22932632-22932651 | MS.gene62847:intron | 25.0% |
| ! | TTATAAATCAAACCATGACA+TGG | - | chr8.4:22932690-22932709 | None:intergenic | 25.0% |
| !! | AACTTTTATGCTGATATAGA+TGG | + | chr8.4:22933384-22933403 | MS.gene62847:intron | 25.0% |
| !! | ATAAATATCACTTCTTTTGC+TGG | - | chr8.4:22932747-22932766 | None:intergenic | 25.0% |
| !! | CAATAGCTGTAATTGTATTT+TGG | + | chr8.4:22932919-22932938 | MS.gene62847:intron | 25.0% |
| !! | TTTAGCTCAATAATTCAACT+GGG | + | chr8.4:22931635-22931654 | MS.gene62847:intron | 25.0% |
| !!! | TATTTGTTATTACTCTGATC+AGG | + | chr8.4:22933553-22933572 | MS.gene62847:intron | 25.0% |
| !!! | TTTTAGCTCAATAATTCAAC+TGG | + | chr8.4:22931634-22931653 | MS.gene62847:intron | 25.0% |
| AAGATAACCAAACAACAAAG+TGG | - | chr8.4:22932425-22932444 | None:intergenic | 30.0% | |
| AATAAAAAGGGGGAAAAGAA+TGG | - | chr8.4:22931574-22931593 | None:intergenic | 30.0% | |
| AATTAGTCATTGTTTGCACT+CGG | + | chr8.4:22932018-22932037 | MS.gene62847:intron | 30.0% | |
| ACCATGATAGCTTAATAAAC+TGG | + | chr8.4:22933502-22933521 | MS.gene62847:intron | 30.0% | |
| ACTTACAATTCTTGCATTTG+CGG | + | chr8.4:22933748-22933767 | MS.gene62847:intron | 30.0% | |
| AGAGTTTGACCTGATAAATA+AGG | - | chr8.4:22931539-22931558 | None:intergenic | 30.0% | |
| ATAAAAAGGGGGAAAAGAAT+GGG | - | chr8.4:22931573-22931592 | None:intergenic | 30.0% | |
| ATTATTTCAGTTAATGTGCC+TGG | + | chr8.4:22931722-22931741 | MS.gene62847:intron | 30.0% | |
| ATTTGGATCTTGGCATTATT+CGG | + | chr8.4:22932072-22932091 | MS.gene62847:intron | 30.0% | |
| CTATAATTGTAGTAGAGGTA+AGG | - | chr8.4:22931891-22931910 | None:intergenic | 30.0% | |
| GGATTACAATTAAGGCAATA+AGG | - | chr8.4:22931518-22931537 | None:intergenic | 30.0% | |
| GTAGTACTCAGTTTATGTAA+AGG | + | chr8.4:22932581-22932600 | MS.gene62847:intron | 30.0% | |
| TACAATTACAGCTATTGCAT+TGG | - | chr8.4:22932916-22932935 | None:intergenic | 30.0% | |
| TCAAGTCACTTACCAAAATA+AGG | - | chr8.4:22933691-22933710 | None:intergenic | 30.0% | |
| TCCAGTTTATTAAGCTATCA+TGG | - | chr8.4:22933506-22933525 | None:intergenic | 30.0% | |
| TGAGTTAGAAATTTGGATCT+TGG | + | chr8.4:22932062-22932081 | MS.gene62847:intron | 30.0% | |
| TGCATCTCGAATAAACAAAA+TGG | + | chr8.4:22931782-22931801 | MS.gene62847:CDS | 30.0% | |
| TTGGTAAGTGACTTGAAAAA+AGG | + | chr8.4:22933695-22933714 | MS.gene62847:intron | 30.0% | |
| ! | AAATCTCATCCATGTTTTCT+GGG | + | chr8.4:22933171-22933190 | MS.gene62847:intron | 30.0% |
| ! | ATTCTAAGAAACTTCTTCAC+GGG | + | chr8.4:22932251-22932270 | MS.gene62847:intron | 30.0% |
| ! | GATTCTAAGAAACTTCTTCA+CGG | + | chr8.4:22932250-22932269 | MS.gene62847:intron | 30.0% |
| ! | GGTAGTTTGAGTTAGAAATT+TGG | + | chr8.4:22932055-22932074 | MS.gene62847:intron | 30.0% |
| ! | GTTCAACCCAATTTTCAATT+TGG | + | chr8.4:22932388-22932407 | MS.gene62847:intron | 30.0% |
| ! | TAAATCTCATCCATGTTTTC+TGG | + | chr8.4:22933170-22933189 | MS.gene62847:intron | 30.0% |
| ! | TTGAAAGAATTTTGTGTCTC+TGG | + | chr8.4:22932311-22932330 | MS.gene62847:intron | 30.0% |
| !! | ACTTTGTTGTTTGGTTATCT+TGG | + | chr8.4:22932424-22932443 | MS.gene62847:intron | 30.0% |
| !! | ATTTTTGTTTCATGCACCAA+GGG | - | chr8.4:22932887-22932906 | None:intergenic | 30.0% |
| !! | CAACAACAATAGGTCATTTT+CGG | - | chr8.4:22933231-22933250 | None:intergenic | 30.0% |
| !! | GTTTGTTGTAATTGCTAAGT+AGG | + | chr8.4:22933118-22933137 | MS.gene62847:intron | 30.0% |
| !!! | TCTTTTTCCACTTTGTTGTT+TGG | + | chr8.4:22932415-22932434 | MS.gene62847:intron | 30.0% |
| !!! | TTGGTTTGGTTTGATTTTCT+GGG | + | chr8.4:22932443-22932462 | MS.gene62847:intron | 30.0% |
| AAACTGGAATGTGCTTAGTA+TGG | + | chr8.4:22933518-22933537 | MS.gene62847:intron | 35.0% | |
| ACCAAAATAAGGAGAGGAAT+AGG | - | chr8.4:22933680-22933699 | None:intergenic | 35.0% | |
| ACTTTATAGCGCTATCAAAC+TGG | - | chr8.4:22932164-22932183 | None:intergenic | 35.0% | |
| AGAAGATCTAGAAAAGAGTG+AGG | - | chr8.4:22932538-22932557 | None:intergenic | 35.0% | |
| ATTCGAGATGCAGAATCATA+TGG | - | chr8.4:22931774-22931793 | None:intergenic | 35.0% | |
| GTTGTTTGGTTATCTTGGTT+TGG | + | chr8.4:22932429-22932448 | MS.gene62847:intron | 35.0% | |
| TCACTTACCAAAATAAGGAG+AGG | - | chr8.4:22933686-22933705 | None:intergenic | 35.0% | |
| TCATGTGTGATCAGTAGTTT+GGG | + | chr8.4:22932281-22932300 | MS.gene62847:intron | 35.0% | |
| TGCACTTCTTCACAATATCA+AGG | - | chr8.4:22933006-22933025 | None:intergenic | 35.0% | |
| TTCATGTGTGATCAGTAGTT+TGG | + | chr8.4:22932280-22932299 | MS.gene62847:intron | 35.0% | |
| TTTAGTAAGATCCCATGTCA+TGG | + | chr8.4:22932675-22932694 | MS.gene62847:intron | 35.0% | |
| ! | AATCTCATCCATGTTTTCTG+GGG | + | chr8.4:22933172-22933191 | MS.gene62847:intron | 35.0% |
| ! | CTTGGTGCATGAAACAAAAA+TGG | + | chr8.4:22932886-22932905 | MS.gene62847:intron | 35.0% |
| ! | TAAACCAATTTGTGGCCTTA+TGG | - | chr8.4:22932502-22932521 | None:intergenic | 35.0% |
| ! | TTCTAAGAAACTTCTTCACG+GGG | + | chr8.4:22932252-22932271 | MS.gene62847:intron | 35.0% |
| !! | CATTTTTGTTTCATGCACCA+AGG | - | chr8.4:22932888-22932907 | None:intergenic | 35.0% |
| !! | TCCTATTCCTCTCCTTATTT+TGG | + | chr8.4:22933676-22933695 | MS.gene62847:CDS | 35.0% |
| !!! | ACAGTTTTGGATGTGTTCAT+TGG | + | chr8.4:22933143-22933162 | MS.gene62847:intron | 35.0% |
| !!! | CTTGGTTTGGTTTGATTTTC+TGG | + | chr8.4:22932442-22932461 | MS.gene62847:intron | 35.0% |
| !!! | TGGTTTGGTTTGATTTTCTG+GGG | + | chr8.4:22932444-22932463 | MS.gene62847:intron | 35.0% |
| AAAGCCATAAGGCCACAAAT+TGG | + | chr8.4:22932495-22932514 | MS.gene62847:intron | 40.0% | |
| AATCAAATTCAAGGTCTGCC+AGG | - | chr8.4:22931743-22931762 | None:intergenic | 40.0% | |
| AGAGTTGCTGCAACAACAAT+AGG | - | chr8.4:22933241-22933260 | None:intergenic | 40.0% | |
| AGATATTCAACATGCTCCCT+TGG | + | chr8.4:22933610-22933629 | MS.gene62847:CDS | 40.0% | |
| CACTCGGATTTATGAGTGAA+TGG | + | chr8.4:22932034-22932053 | MS.gene62847:intron | 40.0% | |
| GAAAGAAGTGACAATACCCT+TGG | + | chr8.4:22932868-22932887 | MS.gene62847:intron | 40.0% | |
| GATATTCAACATGCTCCCTT+GGG | + | chr8.4:22933611-22933630 | MS.gene62847:CDS | 40.0% | |
| TAAGGCAATAAGGGTGAAGA+AGG | - | chr8.4:22931508-22931527 | None:intergenic | 40.0% | |
| TAGCGCTATAAAGTACGTGT+TGG | + | chr8.4:22932170-22932189 | MS.gene62847:intron | 40.0% | |
| ! | ATCTCATCCATGTTTTCTGG+GGG | + | chr8.4:22933173-22933192 | MS.gene62847:intron | 40.0% |
| ! | GGTATTGTCACTTCTTTCGT+TGG | - | chr8.4:22932866-22932885 | None:intergenic | 40.0% |
| ! | GTCAAGTTTGGTTCAGTTTG+AGG | - | chr8.4:22932819-22932838 | None:intergenic | 40.0% |
| ! | TAATCTGAGTACTGCTGCTA+GGG | - | chr8.4:22932779-22932798 | None:intergenic | 40.0% |
| ! | TGCTAAGTAGGCTACAGTTT+TGG | + | chr8.4:22933130-22933149 | MS.gene62847:intron | 40.0% |
| ! | TTAATCTGAGTACTGCTGCT+AGG | - | chr8.4:22932780-22932799 | None:intergenic | 40.0% |
| !! | ACGTGTTGGTTGATGTTTCA+TGG | + | chr8.4:22932184-22932203 | MS.gene62847:intron | 40.0% |
| !! | CAGGTTGATCTACACATCAT+TGG | + | chr8.4:22933774-22933793 | MS.gene62847:intron | 40.0% |
| !! | GAGATGATGATGGTCAAGTT+TGG | - | chr8.4:22932831-22932850 | None:intergenic | 40.0% |
| !! | GGGGAAAAGAATGGGTTAAA+GGG | - | chr8.4:22931565-22931584 | None:intergenic | 40.0% |
| ACTCTGATCAGGTACAGTCA+AGG | + | chr8.4:22933564-22933583 | MS.gene62847:intron | 45.0% | |
| CATATCTCCCCCAGAAAACA+TGG | - | chr8.4:22933183-22933202 | None:intergenic | 45.0% | |
| CCTGCACTCGAGTTATAAAG+CGG | - | chr8.4:22932343-22932362 | None:intergenic | 45.0% | |
| CTACCTTGTAACAGGACACT+GGG | + | chr8.4:22931845-22931864 | MS.gene62847:CDS | 45.0% | |
| GAATGTGCTTAGTATGGTCC+TGG | + | chr8.4:22933524-22933543 | MS.gene62847:intron | 45.0% | |
| GATGCGACTGCAATTGATCA+TGG | + | chr8.4:22933039-22933058 | MS.gene62847:intron | 45.0% | |
| GCAGCTACTGTGATATACTC+AGG | - | chr8.4:22931813-22931832 | None:intergenic | 45.0% | |
| GTGATCAGTAGTTTGGGTGA+GGG | + | chr8.4:22932287-22932306 | MS.gene62847:intron | 45.0% | |
| TAACCCAGTGTCCTGTTACA+AGG | - | chr8.4:22931851-22931870 | None:intergenic | 45.0% | |
| TACAAGGTAGAAACCGCACA+GGG | - | chr8.4:22931835-22931854 | None:intergenic | 45.0% | |
| TCCCTTGGGAAAAGAAGCAA+CGG | + | chr8.4:22933625-22933644 | MS.gene62847:CDS | 45.0% | |
| TCTACCTTGTAACAGGACAC+TGG | + | chr8.4:22931844-22931863 | MS.gene62847:CDS | 45.0% | |
| TGCGGTTTCTACCTTGTAAC+AGG | + | chr8.4:22931837-22931856 | MS.gene62847:CDS | 45.0% | |
| TGTAACAGGACACTGGGTTA+TGG | + | chr8.4:22931851-22931870 | MS.gene62847:CDS | 45.0% | |
| TGTGATCAGTAGTTTGGGTG+AGG | + | chr8.4:22932286-22932305 | MS.gene62847:intron | 45.0% | |
| TTACAAGGTAGAAACCGCAC+AGG | - | chr8.4:22931836-22931855 | None:intergenic | 45.0% | |
| ! | AATCTGAGTACTGCTGCTAG+GGG | - | chr8.4:22932778-22932797 | None:intergenic | 45.0% |
| !! | GGGGGAAAAGAATGGGTTAA+AGG | - | chr8.4:22931566-22931585 | None:intergenic | 45.0% |
| !! | GTACAGTCAAGGAAAGCATC+TGG | + | chr8.4:22933575-22933594 | MS.gene62847:CDS | 45.0% |
| ACTGAACCACTGCTCCTGAT+TGG | - | chr8.4:22932649-22932668 | None:intergenic | 50.0% | |
| ATCGAACCAATCAGGAGCAG+TGG | + | chr8.4:22932640-22932659 | MS.gene62847:intron | 50.0% | |
| ATTCTTGCATTTGCGGCTGC+AGG | + | chr8.4:22933755-22933774 | MS.gene62847:intron | 50.0% | |
| CCGCTTTATAACTCGAGTGC+AGG | + | chr8.4:22932340-22932359 | MS.gene62847:intron | 50.0% | |
| TTGAGGGGACTGTGCTTCTA+TGG | - | chr8.4:22933277-22933296 | None:intergenic | 50.0% | |
| ! | AGCCGTTGCTTCTTTTCCCA+AGG | - | chr8.4:22933630-22933649 | None:intergenic | 50.0% |
| ! | ATCTGAGTACTGCTGCTAGG+GGG | - | chr8.4:22932777-22932796 | None:intergenic | 50.0% |
| ! | GCCGTTGCTTCTTTTCCCAA+GGG | - | chr8.4:22933629-22933648 | None:intergenic | 50.0% |
| ATCACAGTAGCTGCCCTGTG+CGG | + | chr8.4:22931819-22931838 | MS.gene62847:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 22931477 | 22933813 | 22931477 | ID=MS.gene62847 |
| chr8.4 | mRNA | 22931477 | 22933813 | 22931477 | ID=MS.gene62847.t1;Parent=MS.gene62847 |
| chr8.4 | exon | 22931477 | 22931530 | 22931477 | ID=MS.gene62847.t1.exon1;Parent=MS.gene62847.t1 |
| chr8.4 | CDS | 22931477 | 22931530 | 22931477 | ID=cds.MS.gene62847.t1;Parent=MS.gene62847.t1 |
| chr8.4 | exon | 22931732 | 22931913 | 22931732 | ID=MS.gene62847.t1.exon2;Parent=MS.gene62847.t1 |
| chr8.4 | CDS | 22931732 | 22931913 | 22931732 | ID=cds.MS.gene62847.t1;Parent=MS.gene62847.t1 |
| chr8.4 | exon | 22933575 | 22933697 | 22933575 | ID=MS.gene62847.t1.exon3;Parent=MS.gene62847.t1 |
| chr8.4 | CDS | 22933575 | 22933697 | 22933575 | ID=cds.MS.gene62847.t1;Parent=MS.gene62847.t1 |
| chr8.4 | exon | 22933777 | 22933813 | 22933777 | ID=MS.gene62847.t1.exon4;Parent=MS.gene62847.t1 |
| chr8.4 | CDS | 22933777 | 22933813 | 22933777 | ID=cds.MS.gene62847.t1;Parent=MS.gene62847.t1 |
| Gene Sequence |
| Protein sequence |
