Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67221.t1 | BAU98053.1 | 96.1 | 358 | 14 | 0 | 1 | 358 | 1 | 358 | 5.00E-192 | 680.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67221.t1 | P07730 | 21.9 | 388 | 217 | 8 | 35 | 338 | 80 | 465 | 4.2e-22 | 107.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67221.t1 | A0A161JQR4 | 96.1 | 358 | 14 | 0 | 1 | 358 | 1 | 358 | 3.6e-192 | 680.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050082 | MS.gene67221 | 0.838233 | 3.25E-57 | -1.69E-46 |
| MS.gene050338 | MS.gene67221 | 0.850281 | 1.88E-60 | -1.69E-46 |
| MS.gene051364 | MS.gene67221 | 0.816345 | 5.80E-52 | -1.69E-46 |
| MS.gene051366 | MS.gene67221 | 0.827323 | 1.67E-54 | -1.69E-46 |
| MS.gene051367 | MS.gene67221 | 0.825413 | 4.75E-54 | -1.69E-46 |
| MS.gene051422 | MS.gene67221 | 0.845948 | 2.95E-59 | -1.69E-46 |
| MS.gene051651 | MS.gene67221 | 0.809432 | 1.90E-50 | -1.69E-46 |
| MS.gene051718 | MS.gene67221 | 0.828289 | 9.76E-55 | -1.69E-46 |
| MS.gene052383 | MS.gene67221 | 0.829117 | 6.16E-55 | -1.69E-46 |
| MS.gene052710 | MS.gene67221 | 0.801237 | 9.90E-49 | -1.69E-46 |
| MS.gene055251 | MS.gene67221 | 0.837347 | 5.48E-57 | -1.69E-46 |
| MS.gene05589 | MS.gene67221 | -0.80593 | 1.05E-49 | -1.69E-46 |
| MS.gene056200 | MS.gene67221 | 0.808318 | 3.29E-50 | -1.69E-46 |
| MS.gene056692 | MS.gene67221 | -0.810742 | 9.91E-51 | -1.69E-46 |
| MS.gene056694 | MS.gene67221 | 0.812569 | 3.97E-51 | -1.69E-46 |
| MS.gene056697 | MS.gene67221 | 0.820548 | 6.47E-53 | -1.69E-46 |
| MS.gene056856 | MS.gene67221 | 0.844833 | 5.92E-59 | -1.69E-46 |
| MS.gene058015 | MS.gene67221 | 0.817588 | 3.05E-52 | -1.69E-46 |
| MS.gene058111 | MS.gene67221 | 0.807435 | 5.06E-50 | -1.69E-46 |
| MS.gene058334 | MS.gene67221 | 0.808287 | 3.34E-50 | -1.69E-46 |
| MS.gene058382 | MS.gene67221 | 0.858526 | 7.76E-63 | -1.69E-46 |
| MS.gene058386 | MS.gene67221 | 0.811008 | 8.68E-51 | -1.69E-46 |
| MS.gene05926 | MS.gene67221 | 0.805085 | 1.58E-49 | -1.69E-46 |
| MS.gene059685 | MS.gene67221 | 0.81378 | 2.15E-51 | -1.69E-46 |
| MS.gene060405 | MS.gene67221 | 0.83151 | 1.60E-55 | -1.69E-46 |
| MS.gene060823 | MS.gene67221 | 0.842515 | 2.47E-58 | -1.69E-46 |
| MS.gene060982 | MS.gene67221 | -0.803559 | 3.29E-49 | -1.69E-46 |
| MS.gene061044 | MS.gene67221 | 0.825047 | 5.80E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67221.t1 | MTR_8g088860 | 93.593 | 359 | 22 | 1 | 1 | 358 | 1 | 359 | 0.0 | 671 |
| MS.gene67221.t1 | MTR_8g088880 | 84.078 | 358 | 57 | 0 | 1 | 358 | 1 | 358 | 0.0 | 599 |
| MS.gene67221.t1 | MTR_8g088890 | 71.141 | 298 | 86 | 0 | 31 | 328 | 3 | 300 | 2.09e-151 | 429 |
| MS.gene67221.t1 | MTR_4g062570 | 41.011 | 356 | 208 | 2 | 1 | 356 | 1 | 354 | 1.02e-100 | 301 |
| MS.gene67221.t1 | MTR_4g072780 | 40.730 | 356 | 209 | 2 | 1 | 356 | 1 | 354 | 1.04e-99 | 299 |
| MS.gene67221.t1 | MTR_4g062550 | 40.449 | 356 | 210 | 2 | 1 | 356 | 1 | 354 | 2.38e-99 | 298 |
| MS.gene67221.t1 | MTR_4g032360 | 40.730 | 356 | 209 | 2 | 1 | 356 | 1 | 354 | 5.09e-99 | 297 |
| MS.gene67221.t1 | MTR_5g022720 | 33.333 | 258 | 140 | 4 | 96 | 348 | 33 | 263 | 2.64e-39 | 140 |
| MS.gene67221.t1 | MTR_4g076710 | 74.419 | 43 | 11 | 0 | 73 | 115 | 1 | 43 | 5.09e-17 | 74.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67221.t1 | AT1G07750 | 40.282 | 355 | 208 | 3 | 1 | 355 | 1 | 351 | 1.30e-94 | 286 |
| MS.gene67221.t1 | AT2G28680 | 40.056 | 357 | 212 | 2 | 1 | 357 | 1 | 355 | 9.19e-94 | 284 |
| MS.gene67221.t1 | AT1G03890 | 24.422 | 389 | 224 | 13 | 32 | 357 | 67 | 448 | 1.21e-18 | 87.0 |
| MS.gene67221.t1 | AT2G28490 | 23.571 | 420 | 237 | 15 | 8 | 357 | 89 | 494 | 9.55e-17 | 81.6 |
| MS.gene67221.t1 | AT1G03880 | 21.975 | 405 | 244 | 10 | 13 | 351 | 43 | 441 | 1.80e-16 | 80.9 |
| MS.gene67221.t1 | AT5G44120 | 22.034 | 413 | 241 | 13 | 13 | 351 | 49 | 454 | 1.15e-15 | 78.6 |
| MS.gene67221.t1 | AT5G44120 | 30.822 | 146 | 100 | 1 | 206 | 351 | 123 | 267 | 1.11e-12 | 68.2 |
| MS.gene67221.t1 | AT5G44120 | 30.822 | 146 | 100 | 1 | 206 | 351 | 206 | 350 | 2.39e-12 | 67.8 |
| MS.gene67221.t1 | AT4G28520 | 29.932 | 147 | 102 | 1 | 205 | 351 | 289 | 434 | 9.61e-12 | 66.2 |
| MS.gene67221.t1 | AT4G28520 | 29.932 | 147 | 102 | 1 | 205 | 351 | 360 | 505 | 1.04e-11 | 66.6 |
Find 80 sgRNAs with CRISPR-Local
Find 111 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATCTTAACATTATATTTCT+TGG | 0.148846 | 4.2:-12483645 | MS.gene67221:CDS |
| TCGTGACTAATCCCACATTT+TGG | 0.192541 | 4.2:+12483361 | None:intergenic |
| ACTTGAACCTAATGCTATTA+AGG | 0.231472 | 4.2:-12483277 | MS.gene67221:CDS |
| AACCCAACATCCTTAATAAA+AGG | 0.256810 | 4.2:+12483318 | None:intergenic |
| AAGCTCACACAAAGCCAAAA+AGG | 0.266595 | 4.2:-12483492 | MS.gene67221:CDS |
| TGTTGGGTTAAGTGTGATTA+GGG | 0.277054 | 4.2:-12483304 | MS.gene67221:CDS |
| ATGTTGGGTTAAGTGTGATT+AGG | 0.298094 | 4.2:-12483305 | MS.gene67221:CDS |
| ACTGAATCCCAGGGGTAGTT+AGG | 0.303206 | 4.2:+12483244 | None:intergenic |
| TGCTAAAACACCATATATTA+AGG | 0.317069 | 4.2:-12483385 | MS.gene67221:CDS |
| AGTTTAATCAAATATGGATT+TGG | 0.320782 | 4.2:-12484213 | None:intergenic |
| GTGATAATCAAGTTAGAAAA+AGG | 0.339715 | 4.2:-12483465 | MS.gene67221:CDS |
| AGGAAAATCTTTATCCGTTA+AGG | 0.342094 | 4.2:+12483338 | None:intergenic |
| TACCTATTGGAGGTGTTTCA+TGG | 0.356456 | 4.2:-12483689 | MS.gene67221:CDS |
| ATGGTGGTGGTTACTACATT+TGG | 0.379198 | 4.2:-12484151 | MS.gene67221:CDS |
| ATAGAAATTGTGGGATTGAA+TGG | 0.390973 | 4.2:-12483192 | MS.gene67221:CDS |
| GAAGGTGCCTTAATAGCATT+AGG | 0.400052 | 4.2:+12483270 | None:intergenic |
| CATAAACAAAGTCTTTAGTT+AGG | 0.401436 | 4.2:+12483415 | None:intergenic |
| TAGCCGGAGAGACATTAGTA+TGG | 0.406175 | 4.2:-12482769 | MS.gene67221:CDS |
| ACTTCAATAGCTCATGTTCC+AGG | 0.412111 | 4.2:-12483618 | MS.gene67221:CDS |
| ATTTACATTGCTAGAGGAAG+TGG | 0.419131 | 4.2:-12483219 | MS.gene67221:CDS |
| GCTAAAGTTGCTGGTGAAGA+AGG | 0.419914 | 4.2:-12483102 | MS.gene67221:CDS |
| ACCTATGCCTAAGCCACAAT+TGG | 0.420447 | 4.2:-12483439 | MS.gene67221:CDS |
| AAGTTCTCAAGTTCAAGTTT+TGG | 0.426929 | 4.2:-12484126 | MS.gene67221:CDS |
| GCAGGGACTGATGGCGTAGT+TGG | 0.443394 | 4.2:-12483777 | MS.gene67221:intron |
| CCAGGGGTAGTTAGGGTTGA+AGG | 0.458140 | 4.2:+12483252 | None:intergenic |
| CTGAATCCCAGGGGTAGTTA+GGG | 0.459551 | 4.2:+12483245 | None:intergenic |
| GTTAGGTCCAATTGTGGCTT+AGG | 0.462868 | 4.2:+12483432 | None:intergenic |
| CCTTCAACCCTAACTACCCC+TGG | 0.463501 | 4.2:-12483252 | MS.gene67221:CDS |
| GTCAACTTGTTCTTCAGCCA+AGG | 0.466314 | 4.2:-12484082 | MS.gene67221:CDS |
| AGCAATGGTTGTGCTGTCTT+CGG | 0.471177 | 4.2:+12484182 | None:intergenic |
| TATAAACAAGTCAAACTAAA+CGG | 0.473051 | 4.2:+12482640 | None:intergenic |
| GATGTCATACCTGTACCTAT+TGG | 0.485348 | 4.2:-12483702 | MS.gene67221:CDS |
| TGTCTTGGATGCTCAAGTTA+AGG | 0.494376 | 4.2:-12483163 | MS.gene67221:CDS |
| AAAGTGGGTTATGTCATAGA+AGG | 0.498483 | 4.2:-12484026 | MS.gene67221:intron |
| GGGATTAGTCACGACCTTAA+CGG | 0.507459 | 4.2:-12483352 | MS.gene67221:CDS |
| CACCATGAAACACCTCCAAT+AGG | 0.508936 | 4.2:+12483687 | None:intergenic |
| ATGTAAATCAACTGAATCCC+AGG | 0.510868 | 4.2:+12483234 | None:intergenic |
| TCCCCATACTAATGTCTCTC+CGG | 0.516887 | 4.2:+12482766 | None:intergenic |
| AAAGACACTTGTTGCACAGT+AGG | 0.532747 | 4.2:+12482734 | None:intergenic |
| GTTTCATGGTGGTTCAATGA+TGG | 0.534589 | 4.2:-12483675 | MS.gene67221:CDS |
| AGCCGGAGAGACATTAGTAT+GGG | 0.536587 | 4.2:-12482768 | MS.gene67221:CDS |
| CAACCATTGCTTGAGGGAGA+TGG | 0.544530 | 4.2:-12484170 | MS.gene67221:CDS |
| GACTGATGGCGTAGTTGGAA+TGG | 0.544651 | 4.2:-12483772 | MS.gene67221:CDS |
| GCTAAGACCAATGTTGGTGC+TGG | 0.545292 | 4.2:-12484104 | MS.gene67221:CDS |
| TCAACTTGTTCTTCAGCCAA+GGG | 0.545644 | 4.2:-12484081 | MS.gene67221:CDS |
| ATTGAATGGAAAACGTGTCT+TGG | 0.545710 | 4.2:-12483178 | MS.gene67221:CDS |
| TTGGCAAACGCAGGGACTGA+TGG | 0.551265 | 4.2:-12483786 | MS.gene67221:intron |
| TTGGATGCTCAAGTTAAGGC+TGG | 0.552687 | 4.2:-12483159 | MS.gene67221:CDS |
| TTGTTCGAATCTGCATAATG+AGG | 0.553966 | 4.2:+12484047 | None:intergenic |
| CCTTTGTTTGAAGAGTTAGC+CGG | 0.556322 | 4.2:-12482785 | MS.gene67221:CDS |
| GTCATACCTGTACCTATTGG+AGG | 0.560557 | 4.2:-12483699 | MS.gene67221:CDS |
| TCCAATTGTGGCTTAGGCAT+AGG | 0.563240 | 4.2:+12483438 | None:intergenic |
| TTGCTTGAGGGAGATGGTGG+TGG | 0.563550 | 4.2:-12484164 | MS.gene67221:CDS |
| GGAATGGTACTCCCCAGCAC+TGG | 0.566146 | 4.2:-12483756 | MS.gene67221:CDS |
| ATATATTAAGGCCCAAAATG+TGG | 0.568201 | 4.2:-12483373 | MS.gene67221:CDS |
| ACAGCACAACCATTGCTTGA+GGG | 0.569100 | 4.2:-12484176 | MS.gene67221:CDS |
| AAAGTCCTTGAACACCACTT+AGG | 0.569759 | 4.2:+12483577 | None:intergenic |
| AGTTGCTGGTGAAGAAGGAA+TGG | 0.570497 | 4.2:-12483097 | MS.gene67221:CDS |
| GAAACACCTCCAATAGGTAC+AGG | 0.571470 | 4.2:+12483693 | None:intergenic |
| AACAAGTCAAACTAAACGGT+AGG | 0.573073 | 4.2:+12482644 | None:intergenic |
| TCTTTAGTTAGGTCCAATTG+TGG | 0.584862 | 4.2:+12483426 | None:intergenic |
| TATATTAAGGCCCAAAATGT+GGG | 0.592612 | 4.2:-12483372 | MS.gene67221:CDS |
| CAGTTGATTTACATTGCTAG+AGG | 0.600562 | 4.2:-12483225 | MS.gene67221:CDS |
| ACAAGTCAAACTAAACGGTA+GGG | 0.602520 | 4.2:+12482645 | None:intergenic |
| CTTCAACCCTAACTACCCCT+GGG | 0.606286 | 4.2:-12483251 | MS.gene67221:CDS |
| CCACCATCTCCCTCAAGCAA+TGG | 0.609709 | 4.2:+12484167 | None:intergenic |
| TGAGGAAGAGCAAATCCCCT+TGG | 0.612076 | 4.2:+12484065 | None:intergenic |
| TATGCAGATTCGAACAAAGT+GGG | 0.614043 | 4.2:-12484041 | MS.gene67221:CDS |
| TGTAAATCAACTGAATCCCA+GGG | 0.616370 | 4.2:+12483235 | None:intergenic |
| TTATGCAGATTCGAACAAAG+TGG | 0.626214 | 4.2:-12484042 | MS.gene67221:CDS |
| CAACTTGTTCTTCAGCCAAG+GGG | 0.631432 | 4.2:-12484080 | MS.gene67221:CDS |
| AAGTTGACCAGCACCAACAT+TGG | 0.633587 | 4.2:+12484097 | None:intergenic |
| CCGGCTAACTCTTCAAACAA+AGG | 0.634501 | 4.2:+12482785 | None:intergenic |
| GACAGCACAACCATTGCTTG+AGG | 0.639965 | 4.2:-12484177 | MS.gene67221:CDS |
| CTATTGGAGGTGTTTCATGG+TGG | 0.653727 | 4.2:-12483686 | MS.gene67221:CDS |
| CCATTGCTTGAGGGAGATGG+TGG | 0.656696 | 4.2:-12484167 | MS.gene67221:CDS |
| TTGTTGCACAGTAGGTGACA+AGG | 0.665977 | 4.2:+12482742 | None:intergenic |
| GCCGGAGAGACATTAGTATG+GGG | 0.692283 | 4.2:-12482767 | MS.gene67221:CDS |
| GGTAGGGAGAATGAGACTTG+TGG | 0.694606 | 4.2:+12482661 | None:intergenic |
| GTAAATCAACTGAATCCCAG+GGG | 0.756773 | 4.2:+12483236 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATACAATTTTAATAAAGATG+AGG | - | chr4.2:12483335-12483354 | MS.gene67221:CDS | 15.0% |
| !!! | TAAAGATTTTCCTTTTATTA+AGG | - | chr4.2:12483527-12483546 | MS.gene67221:CDS | 15.0% |
| !! | GATCTTAACATTATATTTCT+TGG | - | chr4.2:12483210-12483229 | MS.gene67221:CDS | 20.0% |
| !! | TTAGCAAAAACAAAAAAATG+TGG | + | chr4.2:12483738-12483757 | None:intergenic | 20.0% |
| !!! | ATTTGAAATTATTTTCGATC+TGG | - | chr4.2:12483983-12484002 | MS.gene67221:intron | 20.0% |
| !!! | TTTTGATTCACAAATCAATT+TGG | - | chr4.2:12483949-12483968 | MS.gene67221:intron | 20.0% |
| ! | AAAAAATAAGTGAATTCTCC+TGG | + | chr4.2:12483258-12483277 | None:intergenic | 25.0% |
| ! | AAGTGGAAAAATAGAAATTG+TGG | - | chr4.2:12483653-12483672 | MS.gene67221:CDS | 25.0% |
| ! | AGTGGAAAAATAGAAATTGT+GGG | - | chr4.2:12483654-12483673 | MS.gene67221:CDS | 25.0% |
| ! | ATCACTTATTTGGTCAAATT+TGG | - | chr4.2:12483050-12483069 | MS.gene67221:intron | 25.0% |
| ! | CATAAACAAAGTCTTTAGTT+AGG | + | chr4.2:12483443-12483462 | None:intergenic | 25.0% |
| ! | GTGATAATCAAGTTAGAAAA+AGG | - | chr4.2:12483390-12483409 | MS.gene67221:CDS | 25.0% |
| ! | TGCTAAAACACCATATATTA+AGG | - | chr4.2:12483470-12483489 | MS.gene67221:CDS | 25.0% |
| ! | TTATCTAAATGATGATCTCT+TGG | - | chr4.2:12482894-12482913 | MS.gene67221:intron | 25.0% |
| !! | TTCCTTTTATTAAGGATGTT+GGG | - | chr4.2:12483535-12483554 | MS.gene67221:CDS | 25.0% |
| !! | TTTCCTTTTATTAAGGATGT+TGG | - | chr4.2:12483534-12483553 | MS.gene67221:CDS | 25.0% |
| !!! | TTCACTTATTTTTTCCTAAG+TGG | - | chr4.2:12483264-12483283 | MS.gene67221:CDS | 25.0% |
| AACCCAACATCCTTAATAAA+AGG | + | chr4.2:12483540-12483559 | None:intergenic | 30.0% | |
| ACTTGAACCTAATGCTATTA+AGG | - | chr4.2:12483578-12483597 | MS.gene67221:CDS | 30.0% | |
| AGGAAAATCTTTATCCGTTA+AGG | + | chr4.2:12483520-12483539 | None:intergenic | 30.0% | |
| ATAGAAATTGTGGGATTGAA+TGG | - | chr4.2:12483663-12483682 | MS.gene67221:CDS | 30.0% | |
| ATATATTAAGGCCCAAAATG+TGG | - | chr4.2:12483482-12483501 | MS.gene67221:CDS | 30.0% | |
| GTATCACAACATCACTTATT+TGG | - | chr4.2:12483040-12483059 | MS.gene67221:intron | 30.0% | |
| TATATTAAGGCCCAAAATGT+GGG | - | chr4.2:12483483-12483502 | MS.gene67221:CDS | 30.0% | |
| ! | ACATTTTGGGCCTTAATATA+TGG | + | chr4.2:12483483-12483502 | None:intergenic | 30.0% |
| ! | GTTTAAAACTCCAACTTACT+TGG | + | chr4.2:12483808-12483827 | None:intergenic | 30.0% |
| !! | AAGTTCTCAAGTTCAAGTTT+TGG | - | chr4.2:12482729-12482748 | MS.gene67221:CDS | 30.0% |
| !!! | GTTGTTTTGAAGCTTAAGAA+AGG | - | chr4.2:12483129-12483148 | MS.gene67221:CDS | 30.0% |
| !!! | TTTGTTTTTGCTAAAGTTGC+TGG | - | chr4.2:12483744-12483763 | MS.gene67221:CDS | 30.0% |
| ATGTAAATCAACTGAATCCC+AGG | + | chr4.2:12483624-12483643 | None:intergenic | 35.0% | |
| ATGTTGGGTTAAGTGTGATT+AGG | - | chr4.2:12483550-12483569 | MS.gene67221:CDS | 35.0% | |
| ATTGAATGGAAAACGTGTCT+TGG | - | chr4.2:12483677-12483696 | MS.gene67221:CDS | 35.0% | |
| ATTTACATTGCTAGAGGAAG+TGG | - | chr4.2:12483636-12483655 | MS.gene67221:CDS | 35.0% | |
| TATGCAGATTCGAACAAAGT+GGG | - | chr4.2:12482814-12482833 | MS.gene67221:intron | 35.0% | |
| TCTTTAGTTAGGTCCAATTG+TGG | + | chr4.2:12483432-12483451 | None:intergenic | 35.0% | |
| TGTAAATCAACTGAATCCCA+GGG | + | chr4.2:12483623-12483642 | None:intergenic | 35.0% | |
| TGTTGGGTTAAGTGTGATTA+GGG | - | chr4.2:12483551-12483570 | MS.gene67221:CDS | 35.0% | |
| TTATGCAGATTCGAACAAAG+TGG | - | chr4.2:12482813-12482832 | MS.gene67221:intron | 35.0% | |
| TTGTTCGAATCTGCATAATG+AGG | + | chr4.2:12482811-12482830 | None:intergenic | 35.0% | |
| ! | CAGTTGATTTACATTGCTAG+AGG | - | chr4.2:12483630-12483649 | MS.gene67221:CDS | 35.0% |
| ! | TGATTATCACAACCCCTTTT+TGG | + | chr4.2:12483380-12483399 | None:intergenic | 35.0% |
| ! | TTTTTCCTAAGTGGTGTTCA+AGG | - | chr4.2:12483273-12483292 | MS.gene67221:CDS | 35.0% |
| !! | AAAGTGGGTTATGTCATAGA+AGG | - | chr4.2:12482829-12482848 | MS.gene67221:intron | 35.0% |
| AAAGTCCTTGAACACCACTT+AGG | + | chr4.2:12483281-12483300 | None:intergenic | 40.0% | |
| AAGCTCACACAAAGCCAAAA+AGG | - | chr4.2:12483363-12483382 | MS.gene67221:CDS | 40.0% | |
| ACTTCAATAGCTCATGTTCC+AGG | - | chr4.2:12483237-12483256 | MS.gene67221:CDS | 40.0% | |
| AGCTCACACAAAGCCAAAAA+GGG | - | chr4.2:12483364-12483383 | MS.gene67221:CDS | 40.0% | |
| GATGTCATACCTGTACCTAT+TGG | - | chr4.2:12483153-12483172 | MS.gene67221:CDS | 40.0% | |
| GTAAATCAACTGAATCCCAG+GGG | + | chr4.2:12483622-12483641 | None:intergenic | 40.0% | |
| GTGACAACTACCAAGTAAGT+TGG | - | chr4.2:12483795-12483814 | MS.gene67221:intron | 40.0% | |
| GTTTCATGGTGGTTCAATGA+TGG | - | chr4.2:12483180-12483199 | MS.gene67221:CDS | 40.0% | |
| TGTCTTGGATGCTCAAGTTA+AGG | - | chr4.2:12483692-12483711 | MS.gene67221:CDS | 40.0% | |
| ! | AAAGACACTTGTTGCACAGT+AGG | + | chr4.2:12484124-12484143 | None:intergenic | 40.0% |
| ! | AACAACTTCTTTTCCAGTGC+TGG | + | chr4.2:12483115-12483134 | None:intergenic | 40.0% |
| ! | ACAACTTCTTTTCCAGTGCT+GGG | + | chr4.2:12483114-12483133 | None:intergenic | 40.0% |
| ! | CCTTTGTTTGAAGAGTTAGC+CGG | - | chr4.2:12484070-12484089 | MS.gene67221:CDS | 40.0% |
| ! | CGATCTGGAGTACGTTATTA+AGG | - | chr4.2:12483998-12484017 | MS.gene67221:intron | 40.0% |
| ! | CGTGACTAATCCCACATTTT+GGG | + | chr4.2:12483496-12483515 | None:intergenic | 40.0% |
| ! | GCAACAAGTGTCTTTTAACG+TGG | - | chr4.2:12484129-12484148 | MS.gene67221:CDS | 40.0% |
| ! | TCAACTTGTTCTTCAGCCAA+GGG | - | chr4.2:12482774-12482793 | MS.gene67221:CDS | 40.0% |
| ! | TCGTGACTAATCCCACATTT+TGG | + | chr4.2:12483497-12483516 | None:intergenic | 40.0% |
| !! | ATGGTGGTGGTTACTACATT+TGG | - | chr4.2:12482704-12482723 | MS.gene67221:CDS | 40.0% |
| !! | GAAGGTGCCTTAATAGCATT+AGG | + | chr4.2:12483588-12483607 | None:intergenic | 40.0% |
| !! | TACCTATTGGAGGTGTTTCA+TGG | - | chr4.2:12483166-12483185 | MS.gene67221:CDS | 40.0% |
| !!! | GTTTTGGCTAAGACCAATGT+TGG | - | chr4.2:12482745-12482764 | MS.gene67221:CDS | 40.0% |
| !!! | TTTTTGGCTTTGTGTGAGCT+TGG | + | chr4.2:12483364-12483383 | None:intergenic | 40.0% |
| AAGTTGACCAGCACCAACAT+TGG | + | chr4.2:12482761-12482780 | None:intergenic | 45.0% | |
| ACAGCACAACCATTGCTTGA+GGG | - | chr4.2:12482679-12482698 | MS.gene67221:CDS | 45.0% | |
| ACCTATGCCTAAGCCACAAT+TGG | - | chr4.2:12483416-12483435 | MS.gene67221:CDS | 45.0% | |
| AGCAATGGTTGTGCTGTCTT+CGG | + | chr4.2:12482676-12482695 | None:intergenic | 45.0% | |
| AGCCGGAGAGACATTAGTAT+GGG | - | chr4.2:12484087-12484106 | MS.gene67221:CDS | 45.0% | |
| AGTTGCTGGTGAAGAAGGAA+TGG | - | chr4.2:12483758-12483777 | MS.gene67221:CDS | 45.0% | |
| CACCATGAAACACCTCCAAT+AGG | + | chr4.2:12483171-12483190 | None:intergenic | 45.0% | |
| CCGGCTAACTCTTCAAACAA+AGG | + | chr4.2:12484073-12484092 | None:intergenic | 45.0% | |
| GAAACACCTCCAATAGGTAC+AGG | + | chr4.2:12483165-12483184 | None:intergenic | 45.0% | |
| GCTAAAGTTGCTGGTGAAGA+AGG | - | chr4.2:12483753-12483772 | MS.gene67221:CDS | 45.0% | |
| GCTCACACAAAGCCAAAAAG+GGG | - | chr4.2:12483365-12483384 | MS.gene67221:CDS | 45.0% | |
| GGTCAAATTTGGCAAACGCA+GGG | - | chr4.2:12483061-12483080 | MS.gene67221:intron | 45.0% | |
| GTCATACCTGTACCTATTGG+AGG | - | chr4.2:12483156-12483175 | MS.gene67221:CDS | 45.0% | |
| GTTAGGTCCAATTGTGGCTT+AGG | + | chr4.2:12483426-12483445 | None:intergenic | 45.0% | |
| TAGCCGGAGAGACATTAGTA+TGG | - | chr4.2:12484086-12484105 | MS.gene67221:CDS | 45.0% | |
| TCCAATTGTGGCTTAGGCAT+AGG | + | chr4.2:12483420-12483439 | None:intergenic | 45.0% | |
| TCCCCATACTAATGTCTCTC+CGG | + | chr4.2:12484092-12484111 | None:intergenic | 45.0% | |
| TGGTCAAATTTGGCAAACGC+AGG | - | chr4.2:12483060-12483079 | MS.gene67221:intron | 45.0% | |
| TTGGATGCTCAAGTTAAGGC+TGG | - | chr4.2:12483696-12483715 | MS.gene67221:CDS | 45.0% | |
| TTGTTGCACAGTAGGTGACA+AGG | + | chr4.2:12484116-12484135 | None:intergenic | 45.0% | |
| ! | CAACTTCTTTTCCAGTGCTG+GGG | + | chr4.2:12483113-12483132 | None:intergenic | 45.0% |
| ! | CAACTTGTTCTTCAGCCAAG+GGG | - | chr4.2:12482775-12482794 | MS.gene67221:CDS | 45.0% |
| ! | GTCAACTTGTTCTTCAGCCA+AGG | - | chr4.2:12482773-12482792 | MS.gene67221:CDS | 45.0% |
| !! | CTATTGGAGGTGTTTCATGG+TGG | - | chr4.2:12483169-12483188 | MS.gene67221:CDS | 45.0% |
| !! | GGGATTAGTCACGACCTTAA+CGG | - | chr4.2:12483503-12483522 | MS.gene67221:CDS | 45.0% |
| !! | TTTAAATAGAATATATTTAT+CGG | - | chr4.2:12483895-12483914 | MS.gene67221:intron | 5.0% |
| !!! | TATTATAAACAAAAATTTTA+TGG | + | chr4.2:12483019-12483038 | None:intergenic | 5.0% |
| ACTGAATCCCAGGGGTAGTT+AGG | + | chr4.2:12483614-12483633 | None:intergenic | 50.0% | |
| CAACCATTGCTTGAGGGAGA+TGG | - | chr4.2:12482685-12482704 | MS.gene67221:CDS | 50.0% | |
| CTGAATCCCAGGGGTAGTTA+GGG | + | chr4.2:12483613-12483632 | None:intergenic | 50.0% | |
| CTTCAACCCTAACTACCCCT+GGG | - | chr4.2:12483604-12483623 | MS.gene67221:CDS | 50.0% | |
| GACAGCACAACCATTGCTTG+AGG | - | chr4.2:12482678-12482697 | MS.gene67221:CDS | 50.0% | |
| GCCGGAGAGACATTAGTATG+GGG | - | chr4.2:12484088-12484107 | MS.gene67221:CDS | 50.0% | |
| GCTAAGACCAATGTTGGTGC+TGG | - | chr4.2:12482751-12482770 | MS.gene67221:CDS | 50.0% | |
| GGTAGGGAGAATGAGACTTG+TGG | + | chr4.2:12484197-12484216 | None:intergenic | 50.0% | |
| TGAGGAAGAGCAAATCCCCT+TGG | + | chr4.2:12482793-12482812 | None:intergenic | 50.0% | |
| ! | GACTGATGGCGTAGTTGGAA+TGG | - | chr4.2:12483083-12483102 | MS.gene67221:CDS | 50.0% |
| CCACCATCTCCCTCAAGCAA+TGG | + | chr4.2:12482691-12482710 | None:intergenic | 55.0% | |
| CCAGGGGTAGTTAGGGTTGA+AGG | + | chr4.2:12483606-12483625 | None:intergenic | 55.0% | |
| CCATTGCTTGAGGGAGATGG+TGG | - | chr4.2:12482688-12482707 | MS.gene67221:CDS | 55.0% | |
| CCTTCAACCCTAACTACCCC+TGG | - | chr4.2:12483603-12483622 | MS.gene67221:CDS | 55.0% | |
| TTGGCAAACGCAGGGACTGA+TGG | - | chr4.2:12483069-12483088 | MS.gene67221:CDS | 55.0% | |
| ! | TTGCTTGAGGGAGATGGTGG+TGG | - | chr4.2:12482691-12482710 | MS.gene67221:CDS | 55.0% |
| GGAATGGTACTCCCCAGCAC+TGG | - | chr4.2:12483099-12483118 | MS.gene67221:CDS | 60.0% | |
| ! | GCAGGGACTGATGGCGTAGT+TGG | - | chr4.2:12483078-12483097 | MS.gene67221:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 12482655 | 12484222 | 12482655 | ID=MS.gene67221 |
| chr4.2 | mRNA | 12482655 | 12484222 | 12482655 | ID=MS.gene67221.t1;Parent=MS.gene67221 |
| chr4.2 | exon | 12484027 | 12484222 | 12484027 | ID=MS.gene67221.t1.exon1;Parent=MS.gene67221.t1 |
| chr4.2 | CDS | 12484027 | 12484222 | 12484027 | ID=cds.MS.gene67221.t1;Parent=MS.gene67221.t1 |
| chr4.2 | exon | 12483069 | 12483795 | 12483069 | ID=MS.gene67221.t1.exon2;Parent=MS.gene67221.t1 |
| chr4.2 | CDS | 12483069 | 12483795 | 12483069 | ID=cds.MS.gene67221.t1;Parent=MS.gene67221.t1 |
| chr4.2 | exon | 12482655 | 12482808 | 12482655 | ID=MS.gene67221.t1.exon3;Parent=MS.gene67221.t1 |
| chr4.2 | CDS | 12482655 | 12482808 | 12482655 | ID=cds.MS.gene67221.t1;Parent=MS.gene67221.t1 |
| Gene Sequence |
| Protein sequence |
