AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene68002


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene68002.t1 MTR_6g018490 97.189 249 7 0 38 286 98 346 1.44e-179 498
MS.gene68002.t1 MTR_6g025610 96.386 249 9 0 38 286 88 336 6.19e-179 496
MS.gene68002.t1 MTR_7g007260 61.677 334 68 3 3 276 4 337 1.40e-139 397
MS.gene68002.t1 MTR_7g007260 58.683 334 65 4 3 276 4 324 1.79e-126 363
MS.gene68002.t1 MTR_7g007260 58.507 335 65 5 3 276 4 325 1.31e-124 359
MS.gene68002.t1 MTR_6g084420 64.228 246 87 1 38 282 98 343 4.17e-115 335
MS.gene68002.t1 MTR_1g110670 60.084 238 95 0 38 275 118 355 1.14e-105 311
MS.gene68002.t1 MTR_5g056550 57.083 240 103 0 38 277 152 391 8.03e-102 303
MS.gene68002.t1 MTR_1g088470 53.226 248 115 1 39 285 53 300 6.67e-88 265
MS.gene68002.t1 MTR_7g108770 48.413 252 122 1 42 285 55 306 2.95e-84 256
MS.gene68002.t1 MTR_5g056550 49.167 240 89 1 38 277 152 358 9.71e-80 246
MS.gene68002.t1 MTR_1g115535 49.383 243 123 0 40 282 60 302 1.01e-78 241
MS.gene68002.t1 MTR_1g115535 49.383 243 123 0 40 282 56 298 1.02e-78 241
MS.gene68002.t1 MTR_4g089170 42.918 233 133 0 43 275 89 321 2.62e-65 207
MS.gene68002.t1 MTR_4g127220 38.800 250 140 4 39 281 75 318 6.26e-52 173
MS.gene68002.t1 MTR_1g095110 36.260 262 158 6 30 287 69 325 1.27e-49 167
MS.gene68002.t1 MTR_5g056550 65.263 95 33 0 38 132 152 246 7.22e-41 143
MS.gene68002.t1 MTR_5g056550 64.894 94 33 0 38 131 152 245 7.38e-40 139
MS.gene68002.t1 MTR_6g071475 37.190 242 136 7 39 275 158 388 5.33e-38 138
MS.gene68002.t1 MTR_3g109870 32.377 244 130 8 39 276 139 353 1.05e-27 110
MS.gene68002.t1 MTR_1g110680 39.175 97 55 1 179 275 10 102 6.92e-15 69.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene68002.t1 AT5G16120 67.901 243 78 0 38 280 100 342 2.49e-125 361
MS.gene68002.t1 AT5G16120 67.901 243 78 0 38 280 100 342 2.49e-125 361
MS.gene68002.t1 AT5G16120 67.901 243 78 0 38 280 118 360 3.55e-125 362
MS.gene68002.t1 AT5G16120 67.901 243 78 0 38 280 132 374 4.12e-125 362
MS.gene68002.t1 AT1G77420 55.882 238 105 0 38 275 139 376 5.74e-96 288
MS.gene68002.t1 AT3G62860 51.899 237 114 0 42 278 13 249 3.83e-88 265
MS.gene68002.t1 AT3G62860 51.899 237 114 0 42 278 56 292 1.87e-87 265
MS.gene68002.t1 AT2G47630 54.274 234 107 0 42 275 13 246 4.79e-86 260
MS.gene68002.t1 AT2G47630 53.527 241 110 1 35 275 28 266 5.05e-86 260
MS.gene68002.t1 AT2G47630 54.274 234 107 0 42 275 58 291 2.10e-85 259
MS.gene68002.t1 AT2G39420 49.789 237 119 0 40 276 57 293 6.65e-80 244
MS.gene68002.t1 AT2G39400 48.148 243 126 0 40 282 51 293 1.15e-75 233
MS.gene68002.t1 AT2G39410 46.444 239 128 0 40 278 57 295 1.53e-74 231
MS.gene68002.t1 AT3G55180 46.862 239 127 0 40 278 52 290 1.60e-71 223
MS.gene68002.t1 AT1G11090 45.106 235 129 0 43 277 80 314 1.95e-71 223
MS.gene68002.t1 AT3G55190 44.082 245 132 2 31 274 52 292 2.92e-64 204
MS.gene68002.t1 AT5G14980 37.975 237 145 2 43 278 81 316 1.90e-54 179
MS.gene68002.t1 AT1G52760 38.039 255 145 4 39 286 84 332 7.90e-52 173
MS.gene68002.t1 AT5G19290 36.910 233 145 2 43 274 82 313 2.41e-51 171
MS.gene68002.t1 AT2G39400 46.629 178 95 0 40 217 51 228 6.08e-48 160
MS.gene68002.t1 AT1G73480 36.214 243 141 7 39 277 230 462 3.02e-40 145
MS.gene68002.t1 AT5G11650 34.583 240 143 7 39 274 146 375 7.90e-36 132
MS.gene68002.t1 AT1G18360 33.607 244 146 6 39 277 149 381 8.34e-34 127
MS.gene68002.t1 AT5G11650 32.704 159 96 5 39 193 146 297 1.07e-16 79.0

Find 51 sgRNAs with CRISPR-Local

Find 201 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACCTAAGTACCTTTGATTT+TGG 0.137143 6.1:-4359138 None:intergenic
CATCAGGCTCACCCTCAATT+AGG 0.247468 6.1:-4360441 None:intergenic
CTACCATTATTCATTCTTCA+TGG 0.264378 6.1:+4360316 MS.gene68002:CDS
GAAACAATTACTCAAATTCT+TGG 0.285397 6.1:+4360463 MS.gene68002:CDS
TTCTTGGTGACATCATTTCT+TGG 0.299252 6.1:+4360479 MS.gene68002:CDS
TGTGTAGATTTCAGAGAAAA+TGG 0.306587 6.1:+4359692 MS.gene68002:intron
GCTATGGATTATCCAGGATT+TGG 0.314731 6.1:+4359044 MS.gene68002:CDS
ATCAGGCTCACCCTCAATTA+GGG 0.334654 6.1:-4360440 None:intergenic
GGTCTTTCAGAAGGTCTTCA+TGG 0.347967 6.1:+4359065 MS.gene68002:CDS
AAACTTGCATCATGCGGATA+TGG 0.356929 6.1:+4359014 MS.gene68002:CDS
ATCGCACCATTCCATGCTTT+AGG 0.408436 6.1:-4359571 None:intergenic
TCTCCATGAAGAATGAATAA+TGG 0.413485 6.1:-4360319 None:intergenic
GTCGGGACCATCTTATTCTT+CGG 0.425573 6.1:-4359765 None:intergenic
ATTTGAGTAATTGTTTCATC+AGG 0.426711 6.1:-4360457 None:intergenic
CAAACCTGTTCCCTCTTCTT+CGG 0.431010 6.1:-4359819 None:intergenic
AGAAAGATGAAGAGGTTACC+AGG 0.454554 6.1:+4356583 None:intergenic
CTATAACGTTATTAGTTACA+AGG 0.464116 6.1:+4359962 MS.gene68002:CDS
TACAATGCTTTGCTCACTGA+TGG 0.467237 6.1:-4360361 None:intergenic
GAAAATGGTTCCACCAAAGT+TGG 0.487825 6.1:+4359707 MS.gene68002:CDS
CCAGGATTTGGTCTTTCAGA+AGG 0.502384 6.1:+4359056 MS.gene68002:CDS
TGCTCAACATGCCCTAATTG+AGG 0.503834 6.1:+4360429 MS.gene68002:CDS
CTTATTCTTCGGAAGAACAT+TGG 0.509068 6.1:-4359754 None:intergenic
ATGGTCCCGACACAGGATAT+AGG 0.516637 6.1:+4359777 MS.gene68002:CDS
TCAACAAGCTGATCAAAACT+TGG 0.517735 6.1:-4359095 None:intergenic
AGATCCGAAGAAGAGGGAAC+AGG 0.520539 6.1:+4359815 MS.gene68002:CDS
CCTTCTGAAAGACCAAATCC+TGG 0.529189 6.1:-4359056 None:intergenic
CATCTCCTATATCCTGTGTC+GGG 0.529204 6.1:-4359782 None:intergenic
GCTCAACATGCCCTAATTGA+GGG 0.530025 6.1:+4360430 MS.gene68002:CDS
TGTTAAAATGCTAATTGCTA+TGG 0.532325 6.1:+4359731 MS.gene68002:CDS
GCATCTCCTATATCCTGTGT+CGG 0.533074 6.1:-4359783 None:intergenic
TCTACAGCCGTCCGCAGGCG+TGG 0.539121 6.1:-4359990 None:intergenic
GCAGTTCTACAGCCGTCCGC+AGG 0.540201 6.1:-4359995 None:intergenic
CATGGAAGAGAATTGAACTC+TGG 0.541050 6.1:-4359490 None:intergenic
AGAGAGAGAGAAAGATGAAG+AGG 0.543583 6.1:+4356575 None:intergenic
TGCAATTCATCATCAACCCC+TGG 0.546322 6.1:-4356601 None:intergenic
TCACGAGCTTGTCTTCTAGC+AGG 0.549660 6.1:-4356655 None:intergenic
CATTCAAAGATCCGAAGAAG+AGG 0.560078 6.1:+4359808 MS.gene68002:CDS
GAAAGATGAAGAGGTTACCA+GGG 0.569912 6.1:+4356584 None:intergenic
GGATAAACCACGCCTGCGGA+CGG 0.574771 6.1:+4359983 MS.gene68002:CDS
GAATAAGATGGTCCCGACAC+AGG 0.586122 6.1:+4359770 MS.gene68002:CDS
GAACAGTACTCCAAAATCAA+AGG 0.588011 6.1:+4359128 MS.gene68002:CDS
TGTTCTTCCGAAGAATAAGA+TGG 0.590037 6.1:+4359758 MS.gene68002:CDS
ATATAGTAATCAGTATCAAG+AGG 0.595173 6.1:-4360539 None:intergenic
TGCTAGAAGACAAGCTCGTG+AGG 0.606036 6.1:+4356657 MS.gene68002:CDS
ATTCAAAGATCCGAAGAAGA+GGG 0.610929 6.1:+4359809 MS.gene68002:CDS
AGAAAATGTACTTTACACAT+CGG 0.615088 6.1:-4359604 None:intergenic
AAACTACCTAAAGCATGGAA+TGG 0.619372 6.1:+4359565 MS.gene68002:CDS
GCTAGAAAACTTGCATCATG+CGG 0.626869 6.1:+4359008 MS.gene68002:CDS
ACTTGAAACTACCTAAAGCA+TGG 0.646742 6.1:+4359560 MS.gene68002:CDS
ACAAGGATAAACCACGCCTG+CGG 0.673065 6.1:+4359979 MS.gene68002:CDS
AAAGATGAAGAGGTTACCAG+GGG 0.694425 6.1:+4356585 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATTGTAAAATAATTGT+AGG - chr6.1:4357613-4357632 None:intergenic 10.0%
!! ATTATTTAAATGTAATTGTT+TGG - chr6.1:4357024-4357043 None:intergenic 10.0%
!! TAAATACCTTAAATAATATA+TGG - chr6.1:4356711-4356730 None:intergenic 10.0%
!!! AAATTTTAATGCTAAAATAA+AGG - chr6.1:4357853-4357872 None:intergenic 10.0%
!!! TTTTATTGAATTTTTAAAGT+TGG + chr6.1:4356817-4356836 MS.gene68002:intron 10.0%
!! TATTGACCATATATTATTTA+AGG + chr6.1:4356702-4356721 MS.gene68002:intron 15.0%
!! AATGCTAAAATAAAGGATTA+AGG - chr6.1:4357846-4357865 None:intergenic 20.0%
!! GATACAATCTTAAAATTTCA+AGG + chr6.1:4358345-4358364 MS.gene68002:intron 20.0%
!! GTAAATAGTTTACTTTGAAT+TGG + chr6.1:4358035-4358054 MS.gene68002:intron 20.0%
!! TAAAATTTCAAGGATCAAAT+AGG + chr6.1:4358355-4358374 MS.gene68002:intron 20.0%
!! TTTAGTGTAATTATATGTGT+CGG + chr6.1:4358870-4358889 MS.gene68002:intron 20.0%
!!! ATTCACATTTTGCAATTTTA+AGG + chr6.1:4358286-4358305 MS.gene68002:intron 20.0%
!!! TAGACTTTTATAATAGCTTA+CGG - chr6.1:4360125-4360144 None:intergenic 20.0%
!!! TTAGACTATTGATAATTTGA+AGG + chr6.1:4358314-4358333 MS.gene68002:intron 20.0%
! AACTAAATTGAGTTATCTTG+TGG + chr6.1:4358939-4358958 MS.gene68002:intron 25.0%
! AATAACAAAGGACAATGATA+AGG - chr6.1:4358575-4358594 None:intergenic 25.0%
! AGAAAATGTACTTTACACAT+CGG - chr6.1:4359607-4359626 None:intergenic 25.0%
! ATTTGAGTAATTGTTTCATC+AGG - chr6.1:4360460-4360479 None:intergenic 25.0%
! CATGTAATGACTATGTTTAT+AGG + chr6.1:4360288-4360307 MS.gene68002:intron 25.0%
! CTATAACGTTATTAGTTACA+AGG + chr6.1:4359962-4359981 MS.gene68002:CDS 25.0%
! GAAACAATTACTCAAATTCT+TGG + chr6.1:4360463-4360482 MS.gene68002:CDS 25.0%
! GAAGATATTGAATGCAAAAA+TGG + chr6.1:4356624-4356643 MS.gene68002:CDS 25.0%
! GATAATAGAAAATGTGTTGT+TGG - chr6.1:4357571-4357590 None:intergenic 25.0%
! TATTAAGTGTGAGAGTTAAT+TGG + chr6.1:4357674-4357693 MS.gene68002:intron 25.0%
! TGTTAAAATGCTAATTGCTA+TGG + chr6.1:4359731-4359750 MS.gene68002:CDS 25.0%
!! AAAGGTTTGGTTTATTTGTA+TGG + chr6.1:4359459-4359478 MS.gene68002:intron 25.0%
!! AATTGGTTTATCAGTAAACA+TGG + chr6.1:4357691-4357710 MS.gene68002:intron 25.0%
!! ACCTTTTGTAGTATTTAATG+TGG + chr6.1:4357782-4357801 MS.gene68002:intron 25.0%
!! AGTAATGATTGATGATACTA+AGG + chr6.1:4359426-4359445 MS.gene68002:intron 25.0%
!! CAATTTTTGTTCGATTTCTT+CGG - chr6.1:4360030-4360049 None:intergenic 25.0%
!!! ACTTTTGATGCGTTATTTTT+TGG + chr6.1:4359879-4359898 MS.gene68002:intron 25.0%
!!! GTTTCTAGCTATTTAATGAT+AGG + chr6.1:4357290-4357309 MS.gene68002:intron 25.0%
!!! TAGTACATTGACTTTCATAT+TGG + chr6.1:4357195-4357214 MS.gene68002:intron 25.0%
!!! TTGAATTTTTAAAGTTGGTC+TGG + chr6.1:4356822-4356841 MS.gene68002:intron 25.0%
!!! TTTCTTTTTGGAGAATCTAT+GGG + chr6.1:4359514-4359533 MS.gene68002:CDS 25.0%
AAAAGTCTATCTTCACGTTA+AGG + chr6.1:4360136-4360155 MS.gene68002:intron 30.0%
AAATAGCTAGAAACTAGAAC+AGG - chr6.1:4357284-4357303 None:intergenic 30.0%
AACTCAATCATGTGTTACAT+TGG + chr6.1:4358968-4358987 MS.gene68002:intron 30.0%
ACATATGCACATAAAACACA+TGG - chr6.1:4357353-4357372 None:intergenic 30.0%
ACTCATATAACTTCAAGAAC+AGG - chr6.1:4358071-4358090 None:intergenic 30.0%
CGAAGAAATCGAACAAAAAT+TGG + chr6.1:4360028-4360047 MS.gene68002:CDS 30.0%
CTACCATTATTCATTCTTCA+TGG + chr6.1:4360316-4360335 MS.gene68002:CDS 30.0%
CTTATGAGGTAAACTCAAAA+GGG + chr6.1:4358637-4358656 MS.gene68002:intron 30.0%
GAAAGAAAATTAGCGCAAAA+AGG - chr6.1:4359856-4359875 None:intergenic 30.0%
GCCACATTAAATACTACAAA+AGG - chr6.1:4357786-4357805 None:intergenic 30.0%
TAATCACATGTATGTAACCA+AGG - chr6.1:4356955-4356974 None:intergenic 30.0%
TATAGACAAAGCAGTATAAG+AGG - chr6.1:4360185-4360204 None:intergenic 30.0%
TCTCCATGAAGAATGAATAA+TGG - chr6.1:4360322-4360341 None:intergenic 30.0%
TCTTATGAGGTAAACTCAAA+AGG + chr6.1:4358636-4358655 MS.gene68002:intron 30.0%
TGAAAACAGCTCATAATCTT+AGG + chr6.1:4359323-4359342 MS.gene68002:intron 30.0%
TGCATCACATCACATTATTT+GGG + chr6.1:4357873-4357892 MS.gene68002:intron 30.0%
TGTGTAGATTTCAGAGAAAA+TGG + chr6.1:4359692-4359711 MS.gene68002:intron 30.0%
TTATTAGTGATGTCTATGTG+TGG - chr6.1:4358458-4358477 None:intergenic 30.0%
TTCATTTCTAATCCATCACA+TGG - chr6.1:4358011-4358030 None:intergenic 30.0%
TTGCATCACATCACATTATT+TGG + chr6.1:4357872-4357891 MS.gene68002:intron 30.0%
! AAACACATGGAGAATTTTCT+TGG - chr6.1:4357340-4357359 None:intergenic 30.0%
! GGTATTTATGTCTTTGCTTT+TGG + chr6.1:4356723-4356742 MS.gene68002:intron 30.0%
! GTATTTTTCTGTCATGGATA+TGG + chr6.1:4358714-4358733 MS.gene68002:intron 30.0%
! TATGGTGTTAGAGTTTATGA+TGG - chr6.1:4357416-4357435 None:intergenic 30.0%
! TGGTTATGTACTAGACATTT+TGG + chr6.1:4357711-4357730 MS.gene68002:intron 30.0%
! TTGACTTTCATATTGGTAGT+TGG + chr6.1:4357202-4357221 MS.gene68002:intron 30.0%
!! AAAGGTACTTAGGTTCTATT+TGG + chr6.1:4359146-4359165 MS.gene68002:intron 30.0%
!! AACCTAAGTACCTTTGATTT+TGG - chr6.1:4359141-4359160 None:intergenic 30.0%
!! AGCATTTTAACAACCAACTT+TGG - chr6.1:4359723-4359742 None:intergenic 30.0%
!! ATGTTGTTTCAAAGCCAATT+GGG + chr6.1:4357507-4357526 MS.gene68002:intron 30.0%
!! ATTTTAACAACCAACTTTGG+TGG - chr6.1:4359720-4359739 None:intergenic 30.0%
!! CTTCTTGAGTTTTTGTTTCT+GGG + chr6.1:4356867-4356886 MS.gene68002:intron 30.0%
!! CTTTCTTTTTGGAGAATCTA+TGG + chr6.1:4359513-4359532 MS.gene68002:CDS 30.0%
!! TACTAAGGTATTGATGCAAA+AGG + chr6.1:4359441-4359460 MS.gene68002:intron 30.0%
!! TCTTCTTGAGTTTTTGTTTC+TGG + chr6.1:4356866-4356885 MS.gene68002:intron 30.0%
!! TGATGGATTAGAAATGAAAG+AGG + chr6.1:4358013-4358032 MS.gene68002:intron 30.0%
!! TTGAGATCTTTTGGAAAAGT+TGG + chr6.1:4358661-4358680 MS.gene68002:intron 30.0%
!!! ACTTGCACTTTTTTCTTTGA+AGG + chr6.1:4358741-4358760 MS.gene68002:intron 30.0%
!!! GTTTTTTTAGTGCACCAAAT+TGG + chr6.1:4356912-4356931 MS.gene68002:intron 30.0%
!!! TTCCGGTCTGTAATTTTTTT+GGG + chr6.1:4357460-4357479 MS.gene68002:intron 30.0%
AAACAGCTCATAATCTTAGG+CGG + chr6.1:4359326-4359345 MS.gene68002:intron 35.0%
AAACTACCTAAAGCATGGAA+TGG + chr6.1:4359565-4359584 MS.gene68002:CDS 35.0%
ACATAATACGTCGATAATGC+AGG - chr6.1:4360217-4360236 None:intergenic 35.0%
ACTTGAAACTACCTAAAGCA+TGG + chr6.1:4359560-4359579 MS.gene68002:CDS 35.0%
AGAAAATTAGCGCAAAAAGG+AGG - chr6.1:4359853-4359872 None:intergenic 35.0%
AGTCCTAGTAAATATCAACG+AGG - chr6.1:4358168-4358187 None:intergenic 35.0%
ATTCAAAGATCCGAAGAAGA+GGG + chr6.1:4359809-4359828 MS.gene68002:CDS 35.0%
CACATATATCGAACACAACA+CGG - chr6.1:4357088-4357107 None:intergenic 35.0%
CACATCACATTATTTGGGAA+GGG + chr6.1:4357878-4357897 MS.gene68002:intron 35.0%
CGATGTTGTTGATATAACCT+TGG + chr6.1:4356935-4356954 MS.gene68002:intron 35.0%
CGATTGTTACATTACAGTTC+CGG + chr6.1:4357443-4357462 MS.gene68002:intron 35.0%
CTAGTATCTGACACATATTG+CGG + chr6.1:4356991-4357010 MS.gene68002:intron 35.0%
CTATAATGTAACGATTGAGG+AGG + chr6.1:4357484-4357503 MS.gene68002:intron 35.0%
CTTATTCTTCGGAAGAACAT+TGG - chr6.1:4359757-4359776 None:intergenic 35.0%
GAACAGTACTCCAAAATCAA+AGG + chr6.1:4359128-4359147 MS.gene68002:CDS 35.0%
GAACTGTAATGTAACAATCG+AGG - chr6.1:4357443-4357462 None:intergenic 35.0%
GATTCTCCAAAAAGAAAGCA+TGG - chr6.1:4359511-4359530 None:intergenic 35.0%
GGACTATAATGACGTTAAGT+TGG + chr6.1:4358183-4358202 MS.gene68002:intron 35.0%
GGACTATAATGTAACGATTG+AGG + chr6.1:4357481-4357500 MS.gene68002:intron 35.0%
GTCCCAAAAAAATTACAGAC+CGG - chr6.1:4357465-4357484 None:intergenic 35.0%
GTCCTAGTAAATATCAACGA+GGG - chr6.1:4358167-4358186 None:intergenic 35.0%
GTTACATTGGAAACATTTGC+AGG + chr6.1:4358981-4359000 MS.gene68002:intron 35.0%
TAAGCTATGAAGCATGGATA+CGG + chr6.1:4358797-4358816 MS.gene68002:intron 35.0%
TACTTATAGCCTATGAAGCA+CGG - chr6.1:4358920-4358939 None:intergenic 35.0%
TAGCTATAAGCTATGAAGCA+TGG + chr6.1:4358791-4358810 MS.gene68002:intron 35.0%
TATCAACAACATCGCCAATT+TGG - chr6.1:4356929-4356948 None:intergenic 35.0%
TCAACAAGCTGATCAAAACT+TGG - chr6.1:4359098-4359117 None:intergenic 35.0%
TCACATCACATTATTTGGGA+AGG + chr6.1:4357877-4357896 MS.gene68002:intron 35.0%
TCCTAGTAAATATCAACGAG+GGG - chr6.1:4358166-4358185 None:intergenic 35.0%
TGAAATCTACACAAAGTTGC+AGG - chr6.1:4359685-4359704 None:intergenic 35.0%
TGTAACAATCGAGGAGAATA+TGG - chr6.1:4357434-4357453 None:intergenic 35.0%
TGTTCGCAGATGAACTTAAT+AGG + chr6.1:4358241-4358260 MS.gene68002:intron 35.0%
TGTTCTTCCGAAGAATAAGA+TGG + chr6.1:4359758-4359777 MS.gene68002:CDS 35.0%
TTGAAACTTGAAAGAGAGAG+AGG + chr6.1:4357257-4357276 MS.gene68002:intron 35.0%
! ACTTTCATATTGGTAGTTGG+TGG + chr6.1:4357205-4357224 MS.gene68002:intron 35.0%
! ATTTTACAACAGTCTTCGAG+GGG - chr6.1:4359364-4359383 None:intergenic 35.0%
! CAAAAGGGATTGAGATCTTT+TGG + chr6.1:4358652-4358671 MS.gene68002:intron 35.0%
! CATTTTACAACAGTCTTCGA+GGG - chr6.1:4359365-4359384 None:intergenic 35.0%
! CATTTTCTCAAACTCAGTCA+TGG + chr6.1:4359619-4359638 MS.gene68002:intron 35.0%
! TCATTTTACAACAGTCTTCG+AGG - chr6.1:4359366-4359385 None:intergenic 35.0%
! TCTCTTCCATGCTTTCTTTT+TGG + chr6.1:4359502-4359521 MS.gene68002:CDS 35.0%
! TGCTATGAAACAGTCTTATG+AGG + chr6.1:4358623-4358642 MS.gene68002:intron 35.0%
! TGTGTCTGTGTCATAGTTTT+AGG + chr6.1:4357104-4357123 MS.gene68002:intron 35.0%
! TTCTTGGTGACATCATTTCT+TGG + chr6.1:4360479-4360498 MS.gene68002:CDS 35.0%
! TTTCTTTGAAGGCATGTAAC+TGG + chr6.1:4358752-4358771 MS.gene68002:intron 35.0%
!! AGGTATTGATGCAAAAGGTT+TGG + chr6.1:4359446-4359465 MS.gene68002:intron 35.0%
!! AGGTTTGAGGTTTTAGTACA+AGG + chr6.1:4357124-4357143 MS.gene68002:intron 35.0%
!! CTCCAAAATCAAAGGTACTT+AGG + chr6.1:4359136-4359155 MS.gene68002:intron 35.0%
!! GATGTTGTTTCAAAGCCAAT+TGG + chr6.1:4357506-4357525 MS.gene68002:intron 35.0%
!! GCTTTTAAGGATATTCAGCT+TGG + chr6.1:4356679-4356698 MS.gene68002:CDS 35.0%
!! GGTTTTAGTACAAGGTTGTT+TGG + chr6.1:4357132-4357151 MS.gene68002:intron 35.0%
!! GTTTTTGCTATGGATTATCC+AGG + chr6.1:4359038-4359057 MS.gene68002:CDS 35.0%
!!! CAGAAAAATACTGCTGCTTT+TGG - chr6.1:4358705-4358724 None:intergenic 35.0%
!!! GTGTCATAGTTTTAGGTTTG+AGG + chr6.1:4357111-4357130 MS.gene68002:intron 35.0%
!!! GTTCCGGTCTGTAATTTTTT+TGG + chr6.1:4357459-4357478 MS.gene68002:intron 35.0%
AAACTTGCATCATGCGGATA+TGG + chr6.1:4359014-4359033 MS.gene68002:CDS 40.0%
AACTTAATAGGTCCAGACAC+AGG + chr6.1:4358253-4358272 MS.gene68002:intron 40.0%
ACCCTACGTAACCATATCAA+GGG - chr6.1:4357167-4357186 None:intergenic 40.0%
ACGTTAAGGCGACACTTAAA+AGG + chr6.1:4360150-4360169 MS.gene68002:intron 40.0%
ACTTAATAGGTCCAGACACA+GGG + chr6.1:4358254-4358273 MS.gene68002:intron 40.0%
CACATTATTTGGGAAGGGAA+TGG + chr6.1:4357883-4357902 MS.gene68002:intron 40.0%
CATGGAAGAGAATTGAACTC+TGG - chr6.1:4359493-4359512 None:intergenic 40.0%
CATTCAAAGATCCGAAGAAG+AGG + chr6.1:4359808-4359827 MS.gene68002:CDS 40.0%
CGTTAAGGCGACACTTAAAA+GGG + chr6.1:4360151-4360170 MS.gene68002:intron 40.0%
CTGGGAAGATTGCATTTAGT+TGG + chr6.1:4356885-4356904 MS.gene68002:intron 40.0%
GAAAATGGTTCCACCAAAGT+TGG + chr6.1:4359707-4359726 MS.gene68002:CDS 40.0%
GCTAGAAAACTTGCATCATG+CGG + chr6.1:4359008-4359027 MS.gene68002:CDS 40.0%
GGTACTTCTTACTCCTAAGA+GGG + chr6.1:4357226-4357245 MS.gene68002:intron 40.0%
GTACTTCTTACTCCTAAGAG+GGG + chr6.1:4357227-4357246 MS.gene68002:intron 40.0%
TACAATGCTTTGCTCACTGA+TGG - chr6.1:4360364-4360383 None:intergenic 40.0%
TACTTCTTACTCCTAAGAGG+GGG + chr6.1:4357228-4357247 MS.gene68002:intron 40.0%
TCCCTTGATATGGTTACGTA+GGG + chr6.1:4357163-4357182 MS.gene68002:intron 40.0%
TGGTACTTCTTACTCCTAAG+AGG + chr6.1:4357225-4357244 MS.gene68002:intron 40.0%
TGTTTCAAAGCCAATTGGGT+CGG + chr6.1:4357511-4357530 MS.gene68002:intron 40.0%
TTATTAGCAGTGTCTGTGTC+CGG - chr6.1:4358832-4358851 None:intergenic 40.0%
! AAGCTAGTCTGATGCACTTA+TGG + chr6.1:4359293-4359312 MS.gene68002:intron 40.0%
! CGGATATGGAGTTTTTGCTA+TGG + chr6.1:4359028-4359047 MS.gene68002:CDS 40.0%
! GCAGCAGTATTTTTCTGTCA+TGG + chr6.1:4358708-4358727 MS.gene68002:intron 40.0%
! GCTATGGATTATCCAGGATT+TGG + chr6.1:4359044-4359063 MS.gene68002:CDS 40.0%
! TGTATTGATACCGACCCAAT+TGG - chr6.1:4357524-4357543 None:intergenic 40.0%
! TTGGAAAAGTTGGCTTCCTA+AGG + chr6.1:4358671-4358690 MS.gene68002:intron 40.0%
!! CTTTTTGGAGAATCTATGGG+TGG + chr6.1:4359517-4359536 MS.gene68002:CDS 40.0%
!!! GCTTTTGGCTTAGATTCCTT+AGG - chr6.1:4358690-4358709 None:intergenic 40.0%
ACTTCAGACTGAACACGTCT+CGG - chr6.1:4358524-4358543 None:intergenic 45.0%
ATCAGGCTCACCCTCAATTA+GGG - chr6.1:4360443-4360462 None:intergenic 45.0%
ATCGCACCATTCCATGCTTT+AGG - chr6.1:4359574-4359593 None:intergenic 45.0%
CAAACCTGTTCCCTCTTCTT+CGG - chr6.1:4359822-4359841 None:intergenic 45.0%
CACCCTACGTAACCATATCA+AGG - chr6.1:4357168-4357187 None:intergenic 45.0%
CATCTCCTATATCCTGTGTC+GGG - chr6.1:4359785-4359804 None:intergenic 45.0%
CTTGATATGGTTACGTAGGG+TGG + chr6.1:4357166-4357185 MS.gene68002:intron 45.0%
GCATCTCCTATATCCTGTGT+CGG - chr6.1:4359786-4359805 None:intergenic 45.0%
GCCCCTCGTTGATATTTACT+AGG + chr6.1:4358162-4358181 MS.gene68002:intron 45.0%
GCTCAACATGCCCTAATTGA+GGG + chr6.1:4360430-4360449 MS.gene68002:CDS 45.0%
GGAGATCATGTCCCTTGATA+TGG + chr6.1:4357153-4357172 MS.gene68002:intron 45.0%
GGTCTTTCAGAAGGTCTTCA+TGG + chr6.1:4359065-4359084 MS.gene68002:CDS 45.0%
GTCCCTTGATATGGTTACGT+AGG + chr6.1:4357162-4357181 MS.gene68002:intron 45.0%
GTCGGGACCATCTTATTCTT+CGG - chr6.1:4359768-4359787 None:intergenic 45.0%
TGCAATTCATCATCAACCCC+TGG - chr6.1:4356604-4356623 None:intergenic 45.0%
TGCTCAACATGCCCTAATTG+AGG + chr6.1:4360429-4360448 MS.gene68002:CDS 45.0%
! ACAAGCTCGTGAGGCTTTTA+AGG + chr6.1:4356666-4356685 MS.gene68002:CDS 45.0%
! ACGTGTTCAGTCTGAAGTGT+CGG + chr6.1:4358526-4358545 MS.gene68002:intron 45.0%
! CCAGGATTTGGTCTTTCAGA+AGG + chr6.1:4359056-4359075 MS.gene68002:CDS 45.0%
! CCTTCTGAAAGACCAAATCC+TGG - chr6.1:4359059-4359078 None:intergenic 45.0%
! GTTTTGCAGACTCCATGTGA+TGG + chr6.1:4357996-4358015 MS.gene68002:intron 45.0%
!! CGGTGCTACATAGTTCATCA+AGG + chr6.1:4358546-4358565 MS.gene68002:intron 45.0%
!! AATTCAATAAAAAATAAAAA+AGG - chr6.1:4356809-4356828 None:intergenic 5.0%
!! ATATTATATATTAATAACAA+AGG - chr6.1:4358587-4358606 None:intergenic 5.0%
!! ATTCAATAAAAAATAAAAAA+GGG - chr6.1:4356808-4356827 None:intergenic 5.0%
!!! ATTTTGAAATATTTATAAAA+TGG - chr6.1:4358109-4358128 None:intergenic 5.0%
ACAAGGATAAACCACGCCTG+CGG + chr6.1:4359979-4359998 MS.gene68002:CDS 50.0%
AGATCCGAAGAAGAGGGAAC+AGG + chr6.1:4359815-4359834 MS.gene68002:CDS 50.0%
ATCAAGTTCGTCCCTGTGTC+TGG - chr6.1:4358268-4358287 None:intergenic 50.0%
ATGGATACGGATGCAGACAC+CGG + chr6.1:4358810-4358829 MS.gene68002:intron 50.0%
ATGGTCCCGACACAGGATAT+AGG + chr6.1:4359777-4359796 MS.gene68002:CDS 50.0%
CATCAGGCTCACCCTCAATT+AGG - chr6.1:4360444-4360463 None:intergenic 50.0%
GAATAAGATGGTCCCGACAC+AGG + chr6.1:4359770-4359789 MS.gene68002:CDS 50.0%
GATGAGTGTCCGTGCTTCAT+AGG + chr6.1:4358908-4358927 MS.gene68002:intron 50.0%
GCACGGACACTCATCGAATT+AGG - chr6.1:4358903-4358922 None:intergenic 50.0%
TCACGAGCTTGTCTTCTAGC+AGG - chr6.1:4356658-4356677 None:intergenic 50.0%
TGCTAGAAGACAAGCTCGTG+AGG + chr6.1:4356657-4356676 MS.gene68002:CDS 50.0%
TTCAACTACCACCCCCTCTT+AGG - chr6.1:4357242-4357261 None:intergenic 50.0%
TTCTTACTCCTAAGAGGGGG+TGG + chr6.1:4357231-4357250 MS.gene68002:intron 50.0%
ACGTCTCGGTCTGACACATG+TGG - chr6.1:4358510-4358529 None:intergenic 55.0%
GGATAAACCACGCCTGCGGA+CGG + chr6.1:4359983-4360002 MS.gene68002:CDS 60.0%
GCAGTTCTACAGCCGTCCGC+AGG - chr6.1:4359998-4360017 None:intergenic 65.0%
TCTACAGCCGTCCGCAGGCG+TGG - chr6.1:4359993-4360012 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr6.1 gene 4356589 4360546 4356589 ID=MS.gene68002
chr6.1 mRNA 4356589 4360546 4356589 ID=MS.gene68002.t1;Parent=MS.gene68002
chr6.1 exon 4356589 4356700 4356589 ID=MS.gene68002.t1.exon1;Parent=MS.gene68002.t1
chr6.1 CDS 4356589 4356700 4356589 ID=cds.MS.gene68002.t1;Parent=MS.gene68002.t1
chr6.1 exon 4359003 4359149 4359003 ID=MS.gene68002.t1.exon2;Parent=MS.gene68002.t1
chr6.1 CDS 4359003 4359149 4359003 ID=cds.MS.gene68002.t1;Parent=MS.gene68002.t1
chr6.1 exon 4359485 4359615 4359485 ID=MS.gene68002.t1.exon3;Parent=MS.gene68002.t1
chr6.1 CDS 4359485 4359615 4359485 ID=cds.MS.gene68002.t1;Parent=MS.gene68002.t1
chr6.1 exon 4359699 4359836 4359699 ID=MS.gene68002.t1.exon4;Parent=MS.gene68002.t1
chr6.1 CDS 4359699 4359836 4359699 ID=cds.MS.gene68002.t1;Parent=MS.gene68002.t1
chr6.1 exon 4359957 4360055 4359957 ID=MS.gene68002.t1.exon5;Parent=MS.gene68002.t1
chr6.1 CDS 4359957 4360055 4359957 ID=cds.MS.gene68002.t1;Parent=MS.gene68002.t1
chr6.1 exon 4360310 4360546 4360310 ID=MS.gene68002.t1.exon6;Parent=MS.gene68002.t1
chr6.1 CDS 4360310 4360546 4360310 ID=cds.MS.gene68002.t1;Parent=MS.gene68002.t1
Gene Sequence

>MS.gene68002

ATGAAGAGGTTACCAGGGGTTGATGATGAATTGCAGAAGATATTGAATGCAAAAATGGATGAAGTTCCTGCTAGAAGACAAGCTCGTGAGGCTTTTAAGGATATTCAGCTTGGTATTGACCATATATTATTTAAGGTATTTATGTCTTTGCTTTTGGTTTTTTTTTCTTTTGTTTTTGTTGATAGAATAATAATGAAATTGATGAAATAAATGAAACCCTTTTTTATTTTTTATTGAATTTTTAAAGTTGGTCTGGTTTTTGTTATTAAATTTTTATTCTTCTTGAGTTTTTGTTTCTGGGAAGATTGCATTTAGTTGGTGATGTTTTTTTAGTGCACCAAATTGGCGATGTTGTTGATATAACCTTGGTTACATACATGTGATTACGTTAAGAAGACGTGTCTAGTATCTGACACATATTGCGGTCTGATACCAAACAATTACATTTAAATAATTTATTTTCTCAATTTATTTATCGATGTCAACATGTTAGTTTCCGTGTTGTGTTCGATATATGTGTCTGTGTCATAGTTTTAGGTTTGAGGTTTTAGTACAAGGTTGTTTGGAGATCATGTCCCTTGATATGGTTACGTAGGGTGGAGTTAATAGTACATTGACTTTCATATTGGTAGTTGGTGGTACTTCTTACTCCTAAGAGGGGGTGGTAGTTGAAACTTGAAAGAGAGAGAGGACCTGTTCTAGTTTCTAGCTATTTAATGATAGGTAGTACTGTACTTTTCTACAGCTACCAAGAAAATTCTCCATGTGTTTTATGTGCATATGTACTTGCGTAAATTATTTCAAGAGAGAATATTCAATTTAGTCCATCATAAACTCTAACACCATATTCTCCTCGATTGTTACATTACAGTTCCGGTCTGTAATTTTTTTGGGACTATAATGTAACGATTGAGGAGGATGTTGTTTCAAAGCCAATTGGGTCGGTATCAATACATTATTATAAATAAGATAAATGTTACCAACAACACATTTTCTATTATCACTTCTTGTTCAATCACATCCTACAATTATTTTACAATTTTTTTATTCAATTACATAAAAAAATTGTTTTATATTTTTTAAATTATTAAGTGTGAGAGTTAATTGGTTTATCAGTAAACATGGTTATGTACTAGACATTTTGGTACTGTTTGATTTATGTGATTGTCTTTACTTGATTAATTAAAGAAAAAACCTTTTGTAGTATTTAATGTGGCATGTTATGTATTTACTCTAATTGCATCACATGTACTTCCTTAATCCTTTATTTTAGCATTAAAATTTTGCATCACATCACATTATTTGGGAAGGGAATGGTTACTTACTCTATCTGATGTTGCTATTTAACTTGAAGATAGTAAATTTGATTTCATTTAAATATAAATAATAATAATTTTATGTGTTTTTGTTTTGCAGACTCCATGTGATGGATTAGAAATGAAAGAGGTAAATAGTTTACTTTGAATTGGTAAATTACATCCTGTTCTTGAAGTTATATGAGTATATCAATCTAGTATCCATTTTATAAATATTTCAAAATGATACTTGAAATTACAAAATGTTAATCAGATTCGCCCCTCGTTGATATTTACTAGGACTATAATGACGTTAAGTTGGTAATGTCGAAGATGAATTTGAAACTATGTGAATTATGTTCGCAGATGAACTTAATAGGTCCAGACACAGGGACGAACTTGATTCACATTTTGCAATTTTAAGGATGTTTTAGACTATTGATAATTTGAAGGACTATGTTGATACAATCTTAAAATTTCAAGGATCAAATAGGATATTTACTCGTTTTCATGTTGTTAATAATCATAAACTATGAAGCACTGATACAAAACTCGAACACTAAATACGACACCACACATAGACATCACTAATAATTTGAGAAATTGAAAGTGATTGAATGAAACCACATGTGTCAGACCGAGACGTGTTCAGTCTGAAGTGTCGGTGCTACATAGTTCATCAAGGTCACCTTATCATTGTCCTTTGTTATTAATATATAATATGATAACATAATCTGTATGCTATGAAACAGTCTTATGAGGTAAACTCAAAAGGGATTGAGATCTTTTGGAAAAGTTGGCTTCCTAAGGAATCTAAGCCAAAAGCAGCAGTATTTTTCTGTCATGGATATGGAGACACTTGCACTTTTTTCTTTGAAGGCATGTAACTGGTATTCAGAACTTATGATAGCTATAAGCTATGAAGCATGGATACGGATGCAGACACCGGACACAGACACTGCTAATAATTTGAGAAAATCACATAATTTAGTGTAATTATATGTGTCGGTGACACGCCTAATTCGATGAGTGTCCGTGCTTCATAGGCTATAAGTAACTAAATTGAGTTATCTTGTGGATTATCAACTCAATCATGTGTTACATTGGAAACATTTGCAGGAATAGCTAGAAAACTTGCATCATGCGGATATGGAGTTTTTGCTATGGATTATCCAGGATTTGGTCTTTCAGAAGGTCTTCATGGCTACATTCCAAGTTTTGATCAGCTTGTTGATGATGTCATTGAACAGTACTCCAAAATCAAAGGTACTTAGGTTCTATTTGGATATACAACTAAATAAATCGCGTATATATCATAGACAATTATCATATACGTGCTTATGTATAACATTTTCTATAACAAAAGAAAAAGTCAAACTGTTTTCGTATAAGTTATAAGCTGTTTTCATAAGCTAGTCTGATGCACTTATGGAAGTAAATGAAAACAGCTCATAATCTTAGGCGGCAGAGTTTAAATCCCCTCGAAGACTGTTGTAAAATGACGATTAAAGTCACTTTTATAAATAATAAAAGTCTTTATGAAGTAATGATTGATGATACTAAGGTATTGATGCAAAAGGTTTGGTTTATTTGTATGGCAGAAAATCCAGAGTTCAATTCTCTTCCATGCTTTCTTTTTGGAGAATCTATGGGTGGAGCTGTTGCGTTGAAGACGCACTTGAAACTACCTAAAGCATGGAATGGTGCGATTCTTTGTGCACCGATGTGTAAAGTACATTTTCTCAAACTCAGTCATGGTTAAGAGTTGTGAAATGATTTGTTCATAAATTACATTTAACCTGCAACTTTGTGTAGATTTCAGAGAAAATGGTTCCACCAAAGTTGGTTGTTAAAATGCTAATTGCTATGGCCAATGTTCTTCCGAAGAATAAGATGGTCCCGACACAGGATATAGGAGATGCAGCATTCAAAGATCCGAAGAAGAGGGAACAGGTTTGTGTTTGTGCCTCCTTTTTGCGCTAATTTTCTTTCGACACTTTTGATGCGTTATTTTTTGGTTAATCTGTGTTAGAAAATTCTTTGACAGTGACACACTATTTAATGTATATGCAGACACACTATAACGTTATTAGTTACAAGGATAAACCACGCCTGCGGACGGCTGTAGAACTGCTTAAAACTACCGAAGAAATCGAACAAAAATTGGAAGAAGTATGTACTCAACTTGTCACTCATGCATCTAAATTTTCTTGTTACACTTTTTCGAATTTAGTTAGACCGTAAGCTATTATAAAAGTCTATCTTCACGTTAAGGCGACACTTAAAAGGGTCGAAGTACCTCTTATACTGCTTTGTCTATAAAAAAAGAACCTGCATTATCGACGTATTATGTTTTGTGACGTATATTTCTATTATGAGTGTAAAGAAAATTTATTAATTTTCACATGTAATGACTATGTTTATAGGTGACTCTACCATTATTCATTCTTCATGGAGAAGCTGATACTGTGACTGATCCATCAGTGAGCAAAGCATTGTATGAAAAAGCAAGCTCTTCAGACAAGAAACTTGAGCTTTACAAAGATGCTCAACATGCCCTAATTGAGGGTGAGCCTGATGAAACAATTACTCAAATTCTTGGTGACATCATTTCTTGGCTTGATGAACATAGCTTGAAGCACAATATTGAAACTTCCTCTTGA

Protein sequence

>MS.gene68002.t1

MKRLPGVDDELQKILNAKMDEVPARRQAREAFKDIQLGIARKLASCGYGVFAMDYPGFGLSEGLHGYIPSFDQLVDDVIEQYSKIKENPEFNSLPCFLFGESMGGAVALKTHLKLPKAWNGAILCAPMCKISEKMVPPKLVVKMLIAMANVLPKNKMVPTQDIGDAAFKDPKKREQTHYNVISYKDKPRLRTAVELLKTTEEIEQKLEEVTLPLFILHGEADTVTDPSVSKALYEKASSSDKKLELYKDAQHALIEGEPDETITQILGDIISWLDEHSLKHNIETSS