Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene68002.t1 | XP_024641320.1 | 82.1 | 336 | 10 | 1 | 1 | 286 | 1 | 336 | 1.10E-144 | 522.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene68002.t1 | Q9C942 | 38.0 | 255 | 145 | 4 | 39 | 286 | 84 | 332 | 2.3e-39 | 164.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene68002.t1 | G7KMS8 | 79.8 | 346 | 10 | 1 | 1 | 286 | 1 | 346 | 1.1e-143 | 518.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049254 | MS.gene68002 | 0.82432 | 8.60E-54 | -1.69E-46 |
MS.gene049321 | MS.gene68002 | -0.802065 | 6.70E-49 | -1.69E-46 |
MS.gene049343 | MS.gene68002 | 0.802564 | 5.28E-49 | -1.69E-46 |
MS.gene049499 | MS.gene68002 | 0.818761 | 1.66E-52 | -1.69E-46 |
MS.gene049652 | MS.gene68002 | 0.816576 | 5.15E-52 | -1.69E-46 |
MS.gene051181 | MS.gene68002 | 0.814221 | 1.72E-51 | -1.69E-46 |
MS.gene051332 | MS.gene68002 | 0.813473 | 2.52E-51 | -1.69E-46 |
MS.gene051368 | MS.gene68002 | 0.801868 | 7.35E-49 | -1.69E-46 |
MS.gene051492 | MS.gene68002 | 0.818108 | 2.33E-52 | -1.69E-46 |
MS.gene052333 | MS.gene68002 | 0.82736 | 1.63E-54 | -1.69E-46 |
MS.gene052586 | MS.gene68002 | 0.811448 | 6.97E-51 | -1.69E-46 |
MS.gene052685 | MS.gene68002 | 0.817333 | 3.48E-52 | -1.69E-46 |
MS.gene052954 | MS.gene68002 | 0.809116 | 2.22E-50 | -1.69E-46 |
MS.gene053094 | MS.gene68002 | 0.812507 | 4.09E-51 | -1.69E-46 |
MS.gene053963 | MS.gene68002 | 0.837816 | 4.16E-57 | -1.69E-46 |
MS.gene054479 | MS.gene68002 | 0.822059 | 2.90E-53 | -1.69E-46 |
MS.gene054576 | MS.gene68002 | 0.806435 | 8.24E-50 | -1.69E-46 |
MS.gene055225 | MS.gene68002 | 0.800654 | 1.30E-48 | -1.69E-46 |
MS.gene055724 | MS.gene68002 | 0.811742 | 6.01E-51 | -1.69E-46 |
MS.gene056162 | MS.gene68002 | 0.804172 | 2.45E-49 | -1.69E-46 |
MS.gene056699 | MS.gene68002 | 0.80441 | 2.19E-49 | -1.69E-46 |
MS.gene056776 | MS.gene68002 | 0.810081 | 1.38E-50 | -1.69E-46 |
MS.gene056779 | MS.gene68002 | 0.824427 | 8.12E-54 | -1.69E-46 |
MS.gene057071 | MS.gene68002 | 0.861213 | 1.20E-63 | -1.69E-46 |
MS.gene057155 | MS.gene68002 | 0.821165 | 4.67E-53 | -1.69E-46 |
MS.gene05952 | MS.gene68002 | 0.804418 | 2.18E-49 | -1.69E-46 |
MS.gene060011 | MS.gene68002 | 0.803885 | 2.82E-49 | -1.69E-46 |
MS.gene060850 | MS.gene68002 | 0.814309 | 1.65E-51 | -1.69E-46 |
MS.gene060851 | MS.gene68002 | 0.814318 | 1.64E-51 | -1.69E-46 |
MS.gene060852 | MS.gene68002 | 0.812136 | 4.93E-51 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene68002.t1 | MTR_6g018490 | 97.189 | 249 | 7 | 0 | 38 | 286 | 98 | 346 | 1.44e-179 | 498 |
MS.gene68002.t1 | MTR_6g025610 | 96.386 | 249 | 9 | 0 | 38 | 286 | 88 | 336 | 6.19e-179 | 496 |
MS.gene68002.t1 | MTR_7g007260 | 61.677 | 334 | 68 | 3 | 3 | 276 | 4 | 337 | 1.40e-139 | 397 |
MS.gene68002.t1 | MTR_7g007260 | 58.683 | 334 | 65 | 4 | 3 | 276 | 4 | 324 | 1.79e-126 | 363 |
MS.gene68002.t1 | MTR_7g007260 | 58.507 | 335 | 65 | 5 | 3 | 276 | 4 | 325 | 1.31e-124 | 359 |
MS.gene68002.t1 | MTR_6g084420 | 64.228 | 246 | 87 | 1 | 38 | 282 | 98 | 343 | 4.17e-115 | 335 |
MS.gene68002.t1 | MTR_1g110670 | 60.084 | 238 | 95 | 0 | 38 | 275 | 118 | 355 | 1.14e-105 | 311 |
MS.gene68002.t1 | MTR_5g056550 | 57.083 | 240 | 103 | 0 | 38 | 277 | 152 | 391 | 8.03e-102 | 303 |
MS.gene68002.t1 | MTR_1g088470 | 53.226 | 248 | 115 | 1 | 39 | 285 | 53 | 300 | 6.67e-88 | 265 |
MS.gene68002.t1 | MTR_7g108770 | 48.413 | 252 | 122 | 1 | 42 | 285 | 55 | 306 | 2.95e-84 | 256 |
MS.gene68002.t1 | MTR_5g056550 | 49.167 | 240 | 89 | 1 | 38 | 277 | 152 | 358 | 9.71e-80 | 246 |
MS.gene68002.t1 | MTR_1g115535 | 49.383 | 243 | 123 | 0 | 40 | 282 | 60 | 302 | 1.01e-78 | 241 |
MS.gene68002.t1 | MTR_1g115535 | 49.383 | 243 | 123 | 0 | 40 | 282 | 56 | 298 | 1.02e-78 | 241 |
MS.gene68002.t1 | MTR_4g089170 | 42.918 | 233 | 133 | 0 | 43 | 275 | 89 | 321 | 2.62e-65 | 207 |
MS.gene68002.t1 | MTR_4g127220 | 38.800 | 250 | 140 | 4 | 39 | 281 | 75 | 318 | 6.26e-52 | 173 |
MS.gene68002.t1 | MTR_1g095110 | 36.260 | 262 | 158 | 6 | 30 | 287 | 69 | 325 | 1.27e-49 | 167 |
MS.gene68002.t1 | MTR_5g056550 | 65.263 | 95 | 33 | 0 | 38 | 132 | 152 | 246 | 7.22e-41 | 143 |
MS.gene68002.t1 | MTR_5g056550 | 64.894 | 94 | 33 | 0 | 38 | 131 | 152 | 245 | 7.38e-40 | 139 |
MS.gene68002.t1 | MTR_6g071475 | 37.190 | 242 | 136 | 7 | 39 | 275 | 158 | 388 | 5.33e-38 | 138 |
MS.gene68002.t1 | MTR_3g109870 | 32.377 | 244 | 130 | 8 | 39 | 276 | 139 | 353 | 1.05e-27 | 110 |
MS.gene68002.t1 | MTR_1g110680 | 39.175 | 97 | 55 | 1 | 179 | 275 | 10 | 102 | 6.92e-15 | 69.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene68002.t1 | AT5G16120 | 67.901 | 243 | 78 | 0 | 38 | 280 | 100 | 342 | 2.49e-125 | 361 |
MS.gene68002.t1 | AT5G16120 | 67.901 | 243 | 78 | 0 | 38 | 280 | 100 | 342 | 2.49e-125 | 361 |
MS.gene68002.t1 | AT5G16120 | 67.901 | 243 | 78 | 0 | 38 | 280 | 118 | 360 | 3.55e-125 | 362 |
MS.gene68002.t1 | AT5G16120 | 67.901 | 243 | 78 | 0 | 38 | 280 | 132 | 374 | 4.12e-125 | 362 |
MS.gene68002.t1 | AT1G77420 | 55.882 | 238 | 105 | 0 | 38 | 275 | 139 | 376 | 5.74e-96 | 288 |
MS.gene68002.t1 | AT3G62860 | 51.899 | 237 | 114 | 0 | 42 | 278 | 13 | 249 | 3.83e-88 | 265 |
MS.gene68002.t1 | AT3G62860 | 51.899 | 237 | 114 | 0 | 42 | 278 | 56 | 292 | 1.87e-87 | 265 |
MS.gene68002.t1 | AT2G47630 | 54.274 | 234 | 107 | 0 | 42 | 275 | 13 | 246 | 4.79e-86 | 260 |
MS.gene68002.t1 | AT2G47630 | 53.527 | 241 | 110 | 1 | 35 | 275 | 28 | 266 | 5.05e-86 | 260 |
MS.gene68002.t1 | AT2G47630 | 54.274 | 234 | 107 | 0 | 42 | 275 | 58 | 291 | 2.10e-85 | 259 |
MS.gene68002.t1 | AT2G39420 | 49.789 | 237 | 119 | 0 | 40 | 276 | 57 | 293 | 6.65e-80 | 244 |
MS.gene68002.t1 | AT2G39400 | 48.148 | 243 | 126 | 0 | 40 | 282 | 51 | 293 | 1.15e-75 | 233 |
MS.gene68002.t1 | AT2G39410 | 46.444 | 239 | 128 | 0 | 40 | 278 | 57 | 295 | 1.53e-74 | 231 |
MS.gene68002.t1 | AT3G55180 | 46.862 | 239 | 127 | 0 | 40 | 278 | 52 | 290 | 1.60e-71 | 223 |
MS.gene68002.t1 | AT1G11090 | 45.106 | 235 | 129 | 0 | 43 | 277 | 80 | 314 | 1.95e-71 | 223 |
MS.gene68002.t1 | AT3G55190 | 44.082 | 245 | 132 | 2 | 31 | 274 | 52 | 292 | 2.92e-64 | 204 |
MS.gene68002.t1 | AT5G14980 | 37.975 | 237 | 145 | 2 | 43 | 278 | 81 | 316 | 1.90e-54 | 179 |
MS.gene68002.t1 | AT1G52760 | 38.039 | 255 | 145 | 4 | 39 | 286 | 84 | 332 | 7.90e-52 | 173 |
MS.gene68002.t1 | AT5G19290 | 36.910 | 233 | 145 | 2 | 43 | 274 | 82 | 313 | 2.41e-51 | 171 |
MS.gene68002.t1 | AT2G39400 | 46.629 | 178 | 95 | 0 | 40 | 217 | 51 | 228 | 6.08e-48 | 160 |
MS.gene68002.t1 | AT1G73480 | 36.214 | 243 | 141 | 7 | 39 | 277 | 230 | 462 | 3.02e-40 | 145 |
MS.gene68002.t1 | AT5G11650 | 34.583 | 240 | 143 | 7 | 39 | 274 | 146 | 375 | 7.90e-36 | 132 |
MS.gene68002.t1 | AT1G18360 | 33.607 | 244 | 146 | 6 | 39 | 277 | 149 | 381 | 8.34e-34 | 127 |
MS.gene68002.t1 | AT5G11650 | 32.704 | 159 | 96 | 5 | 39 | 193 | 146 | 297 | 1.07e-16 | 79.0 |
Find 51 sgRNAs with CRISPR-Local
Find 201 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AACCTAAGTACCTTTGATTT+TGG | 0.137143 | 6.1:-4359138 | None:intergenic |
CATCAGGCTCACCCTCAATT+AGG | 0.247468 | 6.1:-4360441 | None:intergenic |
CTACCATTATTCATTCTTCA+TGG | 0.264378 | 6.1:+4360316 | MS.gene68002:CDS |
GAAACAATTACTCAAATTCT+TGG | 0.285397 | 6.1:+4360463 | MS.gene68002:CDS |
TTCTTGGTGACATCATTTCT+TGG | 0.299252 | 6.1:+4360479 | MS.gene68002:CDS |
TGTGTAGATTTCAGAGAAAA+TGG | 0.306587 | 6.1:+4359692 | MS.gene68002:intron |
GCTATGGATTATCCAGGATT+TGG | 0.314731 | 6.1:+4359044 | MS.gene68002:CDS |
ATCAGGCTCACCCTCAATTA+GGG | 0.334654 | 6.1:-4360440 | None:intergenic |
GGTCTTTCAGAAGGTCTTCA+TGG | 0.347967 | 6.1:+4359065 | MS.gene68002:CDS |
AAACTTGCATCATGCGGATA+TGG | 0.356929 | 6.1:+4359014 | MS.gene68002:CDS |
ATCGCACCATTCCATGCTTT+AGG | 0.408436 | 6.1:-4359571 | None:intergenic |
TCTCCATGAAGAATGAATAA+TGG | 0.413485 | 6.1:-4360319 | None:intergenic |
GTCGGGACCATCTTATTCTT+CGG | 0.425573 | 6.1:-4359765 | None:intergenic |
ATTTGAGTAATTGTTTCATC+AGG | 0.426711 | 6.1:-4360457 | None:intergenic |
CAAACCTGTTCCCTCTTCTT+CGG | 0.431010 | 6.1:-4359819 | None:intergenic |
AGAAAGATGAAGAGGTTACC+AGG | 0.454554 | 6.1:+4356583 | None:intergenic |
CTATAACGTTATTAGTTACA+AGG | 0.464116 | 6.1:+4359962 | MS.gene68002:CDS |
TACAATGCTTTGCTCACTGA+TGG | 0.467237 | 6.1:-4360361 | None:intergenic |
GAAAATGGTTCCACCAAAGT+TGG | 0.487825 | 6.1:+4359707 | MS.gene68002:CDS |
CCAGGATTTGGTCTTTCAGA+AGG | 0.502384 | 6.1:+4359056 | MS.gene68002:CDS |
TGCTCAACATGCCCTAATTG+AGG | 0.503834 | 6.1:+4360429 | MS.gene68002:CDS |
CTTATTCTTCGGAAGAACAT+TGG | 0.509068 | 6.1:-4359754 | None:intergenic |
ATGGTCCCGACACAGGATAT+AGG | 0.516637 | 6.1:+4359777 | MS.gene68002:CDS |
TCAACAAGCTGATCAAAACT+TGG | 0.517735 | 6.1:-4359095 | None:intergenic |
AGATCCGAAGAAGAGGGAAC+AGG | 0.520539 | 6.1:+4359815 | MS.gene68002:CDS |
CCTTCTGAAAGACCAAATCC+TGG | 0.529189 | 6.1:-4359056 | None:intergenic |
CATCTCCTATATCCTGTGTC+GGG | 0.529204 | 6.1:-4359782 | None:intergenic |
GCTCAACATGCCCTAATTGA+GGG | 0.530025 | 6.1:+4360430 | MS.gene68002:CDS |
TGTTAAAATGCTAATTGCTA+TGG | 0.532325 | 6.1:+4359731 | MS.gene68002:CDS |
GCATCTCCTATATCCTGTGT+CGG | 0.533074 | 6.1:-4359783 | None:intergenic |
TCTACAGCCGTCCGCAGGCG+TGG | 0.539121 | 6.1:-4359990 | None:intergenic |
GCAGTTCTACAGCCGTCCGC+AGG | 0.540201 | 6.1:-4359995 | None:intergenic |
CATGGAAGAGAATTGAACTC+TGG | 0.541050 | 6.1:-4359490 | None:intergenic |
AGAGAGAGAGAAAGATGAAG+AGG | 0.543583 | 6.1:+4356575 | None:intergenic |
TGCAATTCATCATCAACCCC+TGG | 0.546322 | 6.1:-4356601 | None:intergenic |
TCACGAGCTTGTCTTCTAGC+AGG | 0.549660 | 6.1:-4356655 | None:intergenic |
CATTCAAAGATCCGAAGAAG+AGG | 0.560078 | 6.1:+4359808 | MS.gene68002:CDS |
GAAAGATGAAGAGGTTACCA+GGG | 0.569912 | 6.1:+4356584 | None:intergenic |
GGATAAACCACGCCTGCGGA+CGG | 0.574771 | 6.1:+4359983 | MS.gene68002:CDS |
GAATAAGATGGTCCCGACAC+AGG | 0.586122 | 6.1:+4359770 | MS.gene68002:CDS |
GAACAGTACTCCAAAATCAA+AGG | 0.588011 | 6.1:+4359128 | MS.gene68002:CDS |
TGTTCTTCCGAAGAATAAGA+TGG | 0.590037 | 6.1:+4359758 | MS.gene68002:CDS |
ATATAGTAATCAGTATCAAG+AGG | 0.595173 | 6.1:-4360539 | None:intergenic |
TGCTAGAAGACAAGCTCGTG+AGG | 0.606036 | 6.1:+4356657 | MS.gene68002:CDS |
ATTCAAAGATCCGAAGAAGA+GGG | 0.610929 | 6.1:+4359809 | MS.gene68002:CDS |
AGAAAATGTACTTTACACAT+CGG | 0.615088 | 6.1:-4359604 | None:intergenic |
AAACTACCTAAAGCATGGAA+TGG | 0.619372 | 6.1:+4359565 | MS.gene68002:CDS |
GCTAGAAAACTTGCATCATG+CGG | 0.626869 | 6.1:+4359008 | MS.gene68002:CDS |
ACTTGAAACTACCTAAAGCA+TGG | 0.646742 | 6.1:+4359560 | MS.gene68002:CDS |
ACAAGGATAAACCACGCCTG+CGG | 0.673065 | 6.1:+4359979 | MS.gene68002:CDS |
AAAGATGAAGAGGTTACCAG+GGG | 0.694425 | 6.1:+4356585 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAAATTGTAAAATAATTGT+AGG | - | chr6.1:4357613-4357632 | None:intergenic | 10.0% |
!! | ATTATTTAAATGTAATTGTT+TGG | - | chr6.1:4357024-4357043 | None:intergenic | 10.0% |
!! | TAAATACCTTAAATAATATA+TGG | - | chr6.1:4356711-4356730 | None:intergenic | 10.0% |
!!! | AAATTTTAATGCTAAAATAA+AGG | - | chr6.1:4357853-4357872 | None:intergenic | 10.0% |
!!! | TTTTATTGAATTTTTAAAGT+TGG | + | chr6.1:4356817-4356836 | MS.gene68002:intron | 10.0% |
!! | TATTGACCATATATTATTTA+AGG | + | chr6.1:4356702-4356721 | MS.gene68002:intron | 15.0% |
!! | AATGCTAAAATAAAGGATTA+AGG | - | chr6.1:4357846-4357865 | None:intergenic | 20.0% |
!! | GATACAATCTTAAAATTTCA+AGG | + | chr6.1:4358345-4358364 | MS.gene68002:intron | 20.0% |
!! | GTAAATAGTTTACTTTGAAT+TGG | + | chr6.1:4358035-4358054 | MS.gene68002:intron | 20.0% |
!! | TAAAATTTCAAGGATCAAAT+AGG | + | chr6.1:4358355-4358374 | MS.gene68002:intron | 20.0% |
!! | TTTAGTGTAATTATATGTGT+CGG | + | chr6.1:4358870-4358889 | MS.gene68002:intron | 20.0% |
!!! | ATTCACATTTTGCAATTTTA+AGG | + | chr6.1:4358286-4358305 | MS.gene68002:intron | 20.0% |
!!! | TAGACTTTTATAATAGCTTA+CGG | - | chr6.1:4360125-4360144 | None:intergenic | 20.0% |
!!! | TTAGACTATTGATAATTTGA+AGG | + | chr6.1:4358314-4358333 | MS.gene68002:intron | 20.0% |
! | AACTAAATTGAGTTATCTTG+TGG | + | chr6.1:4358939-4358958 | MS.gene68002:intron | 25.0% |
! | AATAACAAAGGACAATGATA+AGG | - | chr6.1:4358575-4358594 | None:intergenic | 25.0% |
! | AGAAAATGTACTTTACACAT+CGG | - | chr6.1:4359607-4359626 | None:intergenic | 25.0% |
! | ATTTGAGTAATTGTTTCATC+AGG | - | chr6.1:4360460-4360479 | None:intergenic | 25.0% |
! | CATGTAATGACTATGTTTAT+AGG | + | chr6.1:4360288-4360307 | MS.gene68002:intron | 25.0% |
! | CTATAACGTTATTAGTTACA+AGG | + | chr6.1:4359962-4359981 | MS.gene68002:CDS | 25.0% |
! | GAAACAATTACTCAAATTCT+TGG | + | chr6.1:4360463-4360482 | MS.gene68002:CDS | 25.0% |
! | GAAGATATTGAATGCAAAAA+TGG | + | chr6.1:4356624-4356643 | MS.gene68002:CDS | 25.0% |
! | GATAATAGAAAATGTGTTGT+TGG | - | chr6.1:4357571-4357590 | None:intergenic | 25.0% |
! | TATTAAGTGTGAGAGTTAAT+TGG | + | chr6.1:4357674-4357693 | MS.gene68002:intron | 25.0% |
! | TGTTAAAATGCTAATTGCTA+TGG | + | chr6.1:4359731-4359750 | MS.gene68002:CDS | 25.0% |
!! | AAAGGTTTGGTTTATTTGTA+TGG | + | chr6.1:4359459-4359478 | MS.gene68002:intron | 25.0% |
!! | AATTGGTTTATCAGTAAACA+TGG | + | chr6.1:4357691-4357710 | MS.gene68002:intron | 25.0% |
!! | ACCTTTTGTAGTATTTAATG+TGG | + | chr6.1:4357782-4357801 | MS.gene68002:intron | 25.0% |
!! | AGTAATGATTGATGATACTA+AGG | + | chr6.1:4359426-4359445 | MS.gene68002:intron | 25.0% |
!! | CAATTTTTGTTCGATTTCTT+CGG | - | chr6.1:4360030-4360049 | None:intergenic | 25.0% |
!!! | ACTTTTGATGCGTTATTTTT+TGG | + | chr6.1:4359879-4359898 | MS.gene68002:intron | 25.0% |
!!! | GTTTCTAGCTATTTAATGAT+AGG | + | chr6.1:4357290-4357309 | MS.gene68002:intron | 25.0% |
!!! | TAGTACATTGACTTTCATAT+TGG | + | chr6.1:4357195-4357214 | MS.gene68002:intron | 25.0% |
!!! | TTGAATTTTTAAAGTTGGTC+TGG | + | chr6.1:4356822-4356841 | MS.gene68002:intron | 25.0% |
!!! | TTTCTTTTTGGAGAATCTAT+GGG | + | chr6.1:4359514-4359533 | MS.gene68002:CDS | 25.0% |
AAAAGTCTATCTTCACGTTA+AGG | + | chr6.1:4360136-4360155 | MS.gene68002:intron | 30.0% | |
AAATAGCTAGAAACTAGAAC+AGG | - | chr6.1:4357284-4357303 | None:intergenic | 30.0% | |
AACTCAATCATGTGTTACAT+TGG | + | chr6.1:4358968-4358987 | MS.gene68002:intron | 30.0% | |
ACATATGCACATAAAACACA+TGG | - | chr6.1:4357353-4357372 | None:intergenic | 30.0% | |
ACTCATATAACTTCAAGAAC+AGG | - | chr6.1:4358071-4358090 | None:intergenic | 30.0% | |
CGAAGAAATCGAACAAAAAT+TGG | + | chr6.1:4360028-4360047 | MS.gene68002:CDS | 30.0% | |
CTACCATTATTCATTCTTCA+TGG | + | chr6.1:4360316-4360335 | MS.gene68002:CDS | 30.0% | |
CTTATGAGGTAAACTCAAAA+GGG | + | chr6.1:4358637-4358656 | MS.gene68002:intron | 30.0% | |
GAAAGAAAATTAGCGCAAAA+AGG | - | chr6.1:4359856-4359875 | None:intergenic | 30.0% | |
GCCACATTAAATACTACAAA+AGG | - | chr6.1:4357786-4357805 | None:intergenic | 30.0% | |
TAATCACATGTATGTAACCA+AGG | - | chr6.1:4356955-4356974 | None:intergenic | 30.0% | |
TATAGACAAAGCAGTATAAG+AGG | - | chr6.1:4360185-4360204 | None:intergenic | 30.0% | |
TCTCCATGAAGAATGAATAA+TGG | - | chr6.1:4360322-4360341 | None:intergenic | 30.0% | |
TCTTATGAGGTAAACTCAAA+AGG | + | chr6.1:4358636-4358655 | MS.gene68002:intron | 30.0% | |
TGAAAACAGCTCATAATCTT+AGG | + | chr6.1:4359323-4359342 | MS.gene68002:intron | 30.0% | |
TGCATCACATCACATTATTT+GGG | + | chr6.1:4357873-4357892 | MS.gene68002:intron | 30.0% | |
TGTGTAGATTTCAGAGAAAA+TGG | + | chr6.1:4359692-4359711 | MS.gene68002:intron | 30.0% | |
TTATTAGTGATGTCTATGTG+TGG | - | chr6.1:4358458-4358477 | None:intergenic | 30.0% | |
TTCATTTCTAATCCATCACA+TGG | - | chr6.1:4358011-4358030 | None:intergenic | 30.0% | |
TTGCATCACATCACATTATT+TGG | + | chr6.1:4357872-4357891 | MS.gene68002:intron | 30.0% | |
! | AAACACATGGAGAATTTTCT+TGG | - | chr6.1:4357340-4357359 | None:intergenic | 30.0% |
! | GGTATTTATGTCTTTGCTTT+TGG | + | chr6.1:4356723-4356742 | MS.gene68002:intron | 30.0% |
! | GTATTTTTCTGTCATGGATA+TGG | + | chr6.1:4358714-4358733 | MS.gene68002:intron | 30.0% |
! | TATGGTGTTAGAGTTTATGA+TGG | - | chr6.1:4357416-4357435 | None:intergenic | 30.0% |
! | TGGTTATGTACTAGACATTT+TGG | + | chr6.1:4357711-4357730 | MS.gene68002:intron | 30.0% |
! | TTGACTTTCATATTGGTAGT+TGG | + | chr6.1:4357202-4357221 | MS.gene68002:intron | 30.0% |
!! | AAAGGTACTTAGGTTCTATT+TGG | + | chr6.1:4359146-4359165 | MS.gene68002:intron | 30.0% |
!! | AACCTAAGTACCTTTGATTT+TGG | - | chr6.1:4359141-4359160 | None:intergenic | 30.0% |
!! | AGCATTTTAACAACCAACTT+TGG | - | chr6.1:4359723-4359742 | None:intergenic | 30.0% |
!! | ATGTTGTTTCAAAGCCAATT+GGG | + | chr6.1:4357507-4357526 | MS.gene68002:intron | 30.0% |
!! | ATTTTAACAACCAACTTTGG+TGG | - | chr6.1:4359720-4359739 | None:intergenic | 30.0% |
!! | CTTCTTGAGTTTTTGTTTCT+GGG | + | chr6.1:4356867-4356886 | MS.gene68002:intron | 30.0% |
!! | CTTTCTTTTTGGAGAATCTA+TGG | + | chr6.1:4359513-4359532 | MS.gene68002:CDS | 30.0% |
!! | TACTAAGGTATTGATGCAAA+AGG | + | chr6.1:4359441-4359460 | MS.gene68002:intron | 30.0% |
!! | TCTTCTTGAGTTTTTGTTTC+TGG | + | chr6.1:4356866-4356885 | MS.gene68002:intron | 30.0% |
!! | TGATGGATTAGAAATGAAAG+AGG | + | chr6.1:4358013-4358032 | MS.gene68002:intron | 30.0% |
!! | TTGAGATCTTTTGGAAAAGT+TGG | + | chr6.1:4358661-4358680 | MS.gene68002:intron | 30.0% |
!!! | ACTTGCACTTTTTTCTTTGA+AGG | + | chr6.1:4358741-4358760 | MS.gene68002:intron | 30.0% |
!!! | GTTTTTTTAGTGCACCAAAT+TGG | + | chr6.1:4356912-4356931 | MS.gene68002:intron | 30.0% |
!!! | TTCCGGTCTGTAATTTTTTT+GGG | + | chr6.1:4357460-4357479 | MS.gene68002:intron | 30.0% |
AAACAGCTCATAATCTTAGG+CGG | + | chr6.1:4359326-4359345 | MS.gene68002:intron | 35.0% | |
AAACTACCTAAAGCATGGAA+TGG | + | chr6.1:4359565-4359584 | MS.gene68002:CDS | 35.0% | |
ACATAATACGTCGATAATGC+AGG | - | chr6.1:4360217-4360236 | None:intergenic | 35.0% | |
ACTTGAAACTACCTAAAGCA+TGG | + | chr6.1:4359560-4359579 | MS.gene68002:CDS | 35.0% | |
AGAAAATTAGCGCAAAAAGG+AGG | - | chr6.1:4359853-4359872 | None:intergenic | 35.0% | |
AGTCCTAGTAAATATCAACG+AGG | - | chr6.1:4358168-4358187 | None:intergenic | 35.0% | |
ATTCAAAGATCCGAAGAAGA+GGG | + | chr6.1:4359809-4359828 | MS.gene68002:CDS | 35.0% | |
CACATATATCGAACACAACA+CGG | - | chr6.1:4357088-4357107 | None:intergenic | 35.0% | |
CACATCACATTATTTGGGAA+GGG | + | chr6.1:4357878-4357897 | MS.gene68002:intron | 35.0% | |
CGATGTTGTTGATATAACCT+TGG | + | chr6.1:4356935-4356954 | MS.gene68002:intron | 35.0% | |
CGATTGTTACATTACAGTTC+CGG | + | chr6.1:4357443-4357462 | MS.gene68002:intron | 35.0% | |
CTAGTATCTGACACATATTG+CGG | + | chr6.1:4356991-4357010 | MS.gene68002:intron | 35.0% | |
CTATAATGTAACGATTGAGG+AGG | + | chr6.1:4357484-4357503 | MS.gene68002:intron | 35.0% | |
CTTATTCTTCGGAAGAACAT+TGG | - | chr6.1:4359757-4359776 | None:intergenic | 35.0% | |
GAACAGTACTCCAAAATCAA+AGG | + | chr6.1:4359128-4359147 | MS.gene68002:CDS | 35.0% | |
GAACTGTAATGTAACAATCG+AGG | - | chr6.1:4357443-4357462 | None:intergenic | 35.0% | |
GATTCTCCAAAAAGAAAGCA+TGG | - | chr6.1:4359511-4359530 | None:intergenic | 35.0% | |
GGACTATAATGACGTTAAGT+TGG | + | chr6.1:4358183-4358202 | MS.gene68002:intron | 35.0% | |
GGACTATAATGTAACGATTG+AGG | + | chr6.1:4357481-4357500 | MS.gene68002:intron | 35.0% | |
GTCCCAAAAAAATTACAGAC+CGG | - | chr6.1:4357465-4357484 | None:intergenic | 35.0% | |
GTCCTAGTAAATATCAACGA+GGG | - | chr6.1:4358167-4358186 | None:intergenic | 35.0% | |
GTTACATTGGAAACATTTGC+AGG | + | chr6.1:4358981-4359000 | MS.gene68002:intron | 35.0% | |
TAAGCTATGAAGCATGGATA+CGG | + | chr6.1:4358797-4358816 | MS.gene68002:intron | 35.0% | |
TACTTATAGCCTATGAAGCA+CGG | - | chr6.1:4358920-4358939 | None:intergenic | 35.0% | |
TAGCTATAAGCTATGAAGCA+TGG | + | chr6.1:4358791-4358810 | MS.gene68002:intron | 35.0% | |
TATCAACAACATCGCCAATT+TGG | - | chr6.1:4356929-4356948 | None:intergenic | 35.0% | |
TCAACAAGCTGATCAAAACT+TGG | - | chr6.1:4359098-4359117 | None:intergenic | 35.0% | |
TCACATCACATTATTTGGGA+AGG | + | chr6.1:4357877-4357896 | MS.gene68002:intron | 35.0% | |
TCCTAGTAAATATCAACGAG+GGG | - | chr6.1:4358166-4358185 | None:intergenic | 35.0% | |
TGAAATCTACACAAAGTTGC+AGG | - | chr6.1:4359685-4359704 | None:intergenic | 35.0% | |
TGTAACAATCGAGGAGAATA+TGG | - | chr6.1:4357434-4357453 | None:intergenic | 35.0% | |
TGTTCGCAGATGAACTTAAT+AGG | + | chr6.1:4358241-4358260 | MS.gene68002:intron | 35.0% | |
TGTTCTTCCGAAGAATAAGA+TGG | + | chr6.1:4359758-4359777 | MS.gene68002:CDS | 35.0% | |
TTGAAACTTGAAAGAGAGAG+AGG | + | chr6.1:4357257-4357276 | MS.gene68002:intron | 35.0% | |
! | ACTTTCATATTGGTAGTTGG+TGG | + | chr6.1:4357205-4357224 | MS.gene68002:intron | 35.0% |
! | ATTTTACAACAGTCTTCGAG+GGG | - | chr6.1:4359364-4359383 | None:intergenic | 35.0% |
! | CAAAAGGGATTGAGATCTTT+TGG | + | chr6.1:4358652-4358671 | MS.gene68002:intron | 35.0% |
! | CATTTTACAACAGTCTTCGA+GGG | - | chr6.1:4359365-4359384 | None:intergenic | 35.0% |
! | CATTTTCTCAAACTCAGTCA+TGG | + | chr6.1:4359619-4359638 | MS.gene68002:intron | 35.0% |
! | TCATTTTACAACAGTCTTCG+AGG | - | chr6.1:4359366-4359385 | None:intergenic | 35.0% |
! | TCTCTTCCATGCTTTCTTTT+TGG | + | chr6.1:4359502-4359521 | MS.gene68002:CDS | 35.0% |
! | TGCTATGAAACAGTCTTATG+AGG | + | chr6.1:4358623-4358642 | MS.gene68002:intron | 35.0% |
! | TGTGTCTGTGTCATAGTTTT+AGG | + | chr6.1:4357104-4357123 | MS.gene68002:intron | 35.0% |
! | TTCTTGGTGACATCATTTCT+TGG | + | chr6.1:4360479-4360498 | MS.gene68002:CDS | 35.0% |
! | TTTCTTTGAAGGCATGTAAC+TGG | + | chr6.1:4358752-4358771 | MS.gene68002:intron | 35.0% |
!! | AGGTATTGATGCAAAAGGTT+TGG | + | chr6.1:4359446-4359465 | MS.gene68002:intron | 35.0% |
!! | AGGTTTGAGGTTTTAGTACA+AGG | + | chr6.1:4357124-4357143 | MS.gene68002:intron | 35.0% |
!! | CTCCAAAATCAAAGGTACTT+AGG | + | chr6.1:4359136-4359155 | MS.gene68002:intron | 35.0% |
!! | GATGTTGTTTCAAAGCCAAT+TGG | + | chr6.1:4357506-4357525 | MS.gene68002:intron | 35.0% |
!! | GCTTTTAAGGATATTCAGCT+TGG | + | chr6.1:4356679-4356698 | MS.gene68002:CDS | 35.0% |
!! | GGTTTTAGTACAAGGTTGTT+TGG | + | chr6.1:4357132-4357151 | MS.gene68002:intron | 35.0% |
!! | GTTTTTGCTATGGATTATCC+AGG | + | chr6.1:4359038-4359057 | MS.gene68002:CDS | 35.0% |
!!! | CAGAAAAATACTGCTGCTTT+TGG | - | chr6.1:4358705-4358724 | None:intergenic | 35.0% |
!!! | GTGTCATAGTTTTAGGTTTG+AGG | + | chr6.1:4357111-4357130 | MS.gene68002:intron | 35.0% |
!!! | GTTCCGGTCTGTAATTTTTT+TGG | + | chr6.1:4357459-4357478 | MS.gene68002:intron | 35.0% |
AAACTTGCATCATGCGGATA+TGG | + | chr6.1:4359014-4359033 | MS.gene68002:CDS | 40.0% | |
AACTTAATAGGTCCAGACAC+AGG | + | chr6.1:4358253-4358272 | MS.gene68002:intron | 40.0% | |
ACCCTACGTAACCATATCAA+GGG | - | chr6.1:4357167-4357186 | None:intergenic | 40.0% | |
ACGTTAAGGCGACACTTAAA+AGG | + | chr6.1:4360150-4360169 | MS.gene68002:intron | 40.0% | |
ACTTAATAGGTCCAGACACA+GGG | + | chr6.1:4358254-4358273 | MS.gene68002:intron | 40.0% | |
CACATTATTTGGGAAGGGAA+TGG | + | chr6.1:4357883-4357902 | MS.gene68002:intron | 40.0% | |
CATGGAAGAGAATTGAACTC+TGG | - | chr6.1:4359493-4359512 | None:intergenic | 40.0% | |
CATTCAAAGATCCGAAGAAG+AGG | + | chr6.1:4359808-4359827 | MS.gene68002:CDS | 40.0% | |
CGTTAAGGCGACACTTAAAA+GGG | + | chr6.1:4360151-4360170 | MS.gene68002:intron | 40.0% | |
CTGGGAAGATTGCATTTAGT+TGG | + | chr6.1:4356885-4356904 | MS.gene68002:intron | 40.0% | |
GAAAATGGTTCCACCAAAGT+TGG | + | chr6.1:4359707-4359726 | MS.gene68002:CDS | 40.0% | |
GCTAGAAAACTTGCATCATG+CGG | + | chr6.1:4359008-4359027 | MS.gene68002:CDS | 40.0% | |
GGTACTTCTTACTCCTAAGA+GGG | + | chr6.1:4357226-4357245 | MS.gene68002:intron | 40.0% | |
GTACTTCTTACTCCTAAGAG+GGG | + | chr6.1:4357227-4357246 | MS.gene68002:intron | 40.0% | |
TACAATGCTTTGCTCACTGA+TGG | - | chr6.1:4360364-4360383 | None:intergenic | 40.0% | |
TACTTCTTACTCCTAAGAGG+GGG | + | chr6.1:4357228-4357247 | MS.gene68002:intron | 40.0% | |
TCCCTTGATATGGTTACGTA+GGG | + | chr6.1:4357163-4357182 | MS.gene68002:intron | 40.0% | |
TGGTACTTCTTACTCCTAAG+AGG | + | chr6.1:4357225-4357244 | MS.gene68002:intron | 40.0% | |
TGTTTCAAAGCCAATTGGGT+CGG | + | chr6.1:4357511-4357530 | MS.gene68002:intron | 40.0% | |
TTATTAGCAGTGTCTGTGTC+CGG | - | chr6.1:4358832-4358851 | None:intergenic | 40.0% | |
! | AAGCTAGTCTGATGCACTTA+TGG | + | chr6.1:4359293-4359312 | MS.gene68002:intron | 40.0% |
! | CGGATATGGAGTTTTTGCTA+TGG | + | chr6.1:4359028-4359047 | MS.gene68002:CDS | 40.0% |
! | GCAGCAGTATTTTTCTGTCA+TGG | + | chr6.1:4358708-4358727 | MS.gene68002:intron | 40.0% |
! | GCTATGGATTATCCAGGATT+TGG | + | chr6.1:4359044-4359063 | MS.gene68002:CDS | 40.0% |
! | TGTATTGATACCGACCCAAT+TGG | - | chr6.1:4357524-4357543 | None:intergenic | 40.0% |
! | TTGGAAAAGTTGGCTTCCTA+AGG | + | chr6.1:4358671-4358690 | MS.gene68002:intron | 40.0% |
!! | CTTTTTGGAGAATCTATGGG+TGG | + | chr6.1:4359517-4359536 | MS.gene68002:CDS | 40.0% |
!!! | GCTTTTGGCTTAGATTCCTT+AGG | - | chr6.1:4358690-4358709 | None:intergenic | 40.0% |
ACTTCAGACTGAACACGTCT+CGG | - | chr6.1:4358524-4358543 | None:intergenic | 45.0% | |
ATCAGGCTCACCCTCAATTA+GGG | - | chr6.1:4360443-4360462 | None:intergenic | 45.0% | |
ATCGCACCATTCCATGCTTT+AGG | - | chr6.1:4359574-4359593 | None:intergenic | 45.0% | |
CAAACCTGTTCCCTCTTCTT+CGG | - | chr6.1:4359822-4359841 | None:intergenic | 45.0% | |
CACCCTACGTAACCATATCA+AGG | - | chr6.1:4357168-4357187 | None:intergenic | 45.0% | |
CATCTCCTATATCCTGTGTC+GGG | - | chr6.1:4359785-4359804 | None:intergenic | 45.0% | |
CTTGATATGGTTACGTAGGG+TGG | + | chr6.1:4357166-4357185 | MS.gene68002:intron | 45.0% | |
GCATCTCCTATATCCTGTGT+CGG | - | chr6.1:4359786-4359805 | None:intergenic | 45.0% | |
GCCCCTCGTTGATATTTACT+AGG | + | chr6.1:4358162-4358181 | MS.gene68002:intron | 45.0% | |
GCTCAACATGCCCTAATTGA+GGG | + | chr6.1:4360430-4360449 | MS.gene68002:CDS | 45.0% | |
GGAGATCATGTCCCTTGATA+TGG | + | chr6.1:4357153-4357172 | MS.gene68002:intron | 45.0% | |
GGTCTTTCAGAAGGTCTTCA+TGG | + | chr6.1:4359065-4359084 | MS.gene68002:CDS | 45.0% | |
GTCCCTTGATATGGTTACGT+AGG | + | chr6.1:4357162-4357181 | MS.gene68002:intron | 45.0% | |
GTCGGGACCATCTTATTCTT+CGG | - | chr6.1:4359768-4359787 | None:intergenic | 45.0% | |
TGCAATTCATCATCAACCCC+TGG | - | chr6.1:4356604-4356623 | None:intergenic | 45.0% | |
TGCTCAACATGCCCTAATTG+AGG | + | chr6.1:4360429-4360448 | MS.gene68002:CDS | 45.0% | |
! | ACAAGCTCGTGAGGCTTTTA+AGG | + | chr6.1:4356666-4356685 | MS.gene68002:CDS | 45.0% |
! | ACGTGTTCAGTCTGAAGTGT+CGG | + | chr6.1:4358526-4358545 | MS.gene68002:intron | 45.0% |
! | CCAGGATTTGGTCTTTCAGA+AGG | + | chr6.1:4359056-4359075 | MS.gene68002:CDS | 45.0% |
! | CCTTCTGAAAGACCAAATCC+TGG | - | chr6.1:4359059-4359078 | None:intergenic | 45.0% |
! | GTTTTGCAGACTCCATGTGA+TGG | + | chr6.1:4357996-4358015 | MS.gene68002:intron | 45.0% |
!! | CGGTGCTACATAGTTCATCA+AGG | + | chr6.1:4358546-4358565 | MS.gene68002:intron | 45.0% |
!! | AATTCAATAAAAAATAAAAA+AGG | - | chr6.1:4356809-4356828 | None:intergenic | 5.0% |
!! | ATATTATATATTAATAACAA+AGG | - | chr6.1:4358587-4358606 | None:intergenic | 5.0% |
!! | ATTCAATAAAAAATAAAAAA+GGG | - | chr6.1:4356808-4356827 | None:intergenic | 5.0% |
!!! | ATTTTGAAATATTTATAAAA+TGG | - | chr6.1:4358109-4358128 | None:intergenic | 5.0% |
ACAAGGATAAACCACGCCTG+CGG | + | chr6.1:4359979-4359998 | MS.gene68002:CDS | 50.0% | |
AGATCCGAAGAAGAGGGAAC+AGG | + | chr6.1:4359815-4359834 | MS.gene68002:CDS | 50.0% | |
ATCAAGTTCGTCCCTGTGTC+TGG | - | chr6.1:4358268-4358287 | None:intergenic | 50.0% | |
ATGGATACGGATGCAGACAC+CGG | + | chr6.1:4358810-4358829 | MS.gene68002:intron | 50.0% | |
ATGGTCCCGACACAGGATAT+AGG | + | chr6.1:4359777-4359796 | MS.gene68002:CDS | 50.0% | |
CATCAGGCTCACCCTCAATT+AGG | - | chr6.1:4360444-4360463 | None:intergenic | 50.0% | |
GAATAAGATGGTCCCGACAC+AGG | + | chr6.1:4359770-4359789 | MS.gene68002:CDS | 50.0% | |
GATGAGTGTCCGTGCTTCAT+AGG | + | chr6.1:4358908-4358927 | MS.gene68002:intron | 50.0% | |
GCACGGACACTCATCGAATT+AGG | - | chr6.1:4358903-4358922 | None:intergenic | 50.0% | |
TCACGAGCTTGTCTTCTAGC+AGG | - | chr6.1:4356658-4356677 | None:intergenic | 50.0% | |
TGCTAGAAGACAAGCTCGTG+AGG | + | chr6.1:4356657-4356676 | MS.gene68002:CDS | 50.0% | |
TTCAACTACCACCCCCTCTT+AGG | - | chr6.1:4357242-4357261 | None:intergenic | 50.0% | |
TTCTTACTCCTAAGAGGGGG+TGG | + | chr6.1:4357231-4357250 | MS.gene68002:intron | 50.0% | |
ACGTCTCGGTCTGACACATG+TGG | - | chr6.1:4358510-4358529 | None:intergenic | 55.0% | |
GGATAAACCACGCCTGCGGA+CGG | + | chr6.1:4359983-4360002 | MS.gene68002:CDS | 60.0% | |
GCAGTTCTACAGCCGTCCGC+AGG | - | chr6.1:4359998-4360017 | None:intergenic | 65.0% | |
TCTACAGCCGTCCGCAGGCG+TGG | - | chr6.1:4359993-4360012 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6.1 | gene | 4356589 | 4360546 | 4356589 | ID=MS.gene68002 |
chr6.1 | mRNA | 4356589 | 4360546 | 4356589 | ID=MS.gene68002.t1;Parent=MS.gene68002 |
chr6.1 | exon | 4356589 | 4356700 | 4356589 | ID=MS.gene68002.t1.exon1;Parent=MS.gene68002.t1 |
chr6.1 | CDS | 4356589 | 4356700 | 4356589 | ID=cds.MS.gene68002.t1;Parent=MS.gene68002.t1 |
chr6.1 | exon | 4359003 | 4359149 | 4359003 | ID=MS.gene68002.t1.exon2;Parent=MS.gene68002.t1 |
chr6.1 | CDS | 4359003 | 4359149 | 4359003 | ID=cds.MS.gene68002.t1;Parent=MS.gene68002.t1 |
chr6.1 | exon | 4359485 | 4359615 | 4359485 | ID=MS.gene68002.t1.exon3;Parent=MS.gene68002.t1 |
chr6.1 | CDS | 4359485 | 4359615 | 4359485 | ID=cds.MS.gene68002.t1;Parent=MS.gene68002.t1 |
chr6.1 | exon | 4359699 | 4359836 | 4359699 | ID=MS.gene68002.t1.exon4;Parent=MS.gene68002.t1 |
chr6.1 | CDS | 4359699 | 4359836 | 4359699 | ID=cds.MS.gene68002.t1;Parent=MS.gene68002.t1 |
chr6.1 | exon | 4359957 | 4360055 | 4359957 | ID=MS.gene68002.t1.exon5;Parent=MS.gene68002.t1 |
chr6.1 | CDS | 4359957 | 4360055 | 4359957 | ID=cds.MS.gene68002.t1;Parent=MS.gene68002.t1 |
chr6.1 | exon | 4360310 | 4360546 | 4360310 | ID=MS.gene68002.t1.exon6;Parent=MS.gene68002.t1 |
chr6.1 | CDS | 4360310 | 4360546 | 4360310 | ID=cds.MS.gene68002.t1;Parent=MS.gene68002.t1 |
Gene Sequence |
Protein sequence |