Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene68182.t1 | XP_024635787.1 | 97.7 | 221 | 4 | 1 | 53 | 272 | 49 | 269 | 8.90E-24 | 120.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene68182.t1 | G7J7S4 | 97.7 | 221 | 4 | 1 | 53 | 272 | 49 | 269 | 6.4e-24 | 120.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049217 | MS.gene68182 | -0.801569 | 8.46E-49 | -1.69E-46 |
MS.gene049222 | MS.gene68182 | -0.831899 | 1.28E-55 | -1.69E-46 |
MS.gene049232 | MS.gene68182 | -0.825364 | 4.88E-54 | -1.69E-46 |
MS.gene049285 | MS.gene68182 | -0.805547 | 1.27E-49 | -1.69E-46 |
MS.gene05010 | MS.gene68182 | -0.805422 | 1.35E-49 | -1.69E-46 |
MS.gene050163 | MS.gene68182 | -0.800891 | 1.16E-48 | -1.69E-46 |
MS.gene050504 | MS.gene68182 | -0.827482 | 1.53E-54 | -1.69E-46 |
MS.gene050518 | MS.gene68182 | -0.815118 | 1.09E-51 | -1.69E-46 |
MS.gene050772 | MS.gene68182 | -0.801873 | 7.33E-49 | -1.69E-46 |
MS.gene050868 | MS.gene68182 | -0.800327 | 1.52E-48 | -1.69E-46 |
MS.gene050871 | MS.gene68182 | -0.803691 | 3.09E-49 | -1.69E-46 |
MS.gene052503 | MS.gene68182 | -0.80018 | 1.63E-48 | -1.69E-46 |
MS.gene053213 | MS.gene68182 | -0.801053 | 1.08E-48 | -1.69E-46 |
MS.gene053286 | MS.gene68182 | -0.800471 | 1.42E-48 | -1.69E-46 |
MS.gene054595 | MS.gene68182 | -0.822429 | 2.38E-53 | -1.69E-46 |
MS.gene054642 | MS.gene68182 | -0.80243 | 5.63E-49 | -1.69E-46 |
MS.gene054954 | MS.gene68182 | -0.807283 | 5.45E-50 | -1.69E-46 |
MS.gene055502 | MS.gene68182 | -0.811807 | 5.82E-51 | -1.69E-46 |
MS.gene055577 | MS.gene68182 | -0.809619 | 1.73E-50 | -1.69E-46 |
MS.gene05589 | MS.gene68182 | -0.800655 | 1.30E-48 | -1.69E-46 |
MS.gene055941 | MS.gene68182 | -0.806962 | 6.37E-50 | -1.69E-46 |
MS.gene056504 | MS.gene68182 | -0.826554 | 2.55E-54 | -1.69E-46 |
MS.gene056510 | MS.gene68182 | -0.803284 | 3.75E-49 | -1.69E-46 |
MS.gene056657 | MS.gene68182 | -0.808063 | 3.72E-50 | -1.69E-46 |
MS.gene059677 | MS.gene68182 | -0.805858 | 1.09E-49 | -1.69E-46 |
MS.gene059718 | MS.gene68182 | -0.804759 | 1.85E-49 | -1.69E-46 |
MS.gene059865 | MS.gene68182 | -0.806785 | 6.95E-50 | -1.69E-46 |
MS.gene060703 | MS.gene68182 | -0.825205 | 5.32E-54 | -1.69E-46 |
MS.gene060762 | MS.gene68182 | -0.809714 | 1.65E-50 | -1.69E-46 |
MS.gene060982 | MS.gene68182 | -0.816175 | 6.33E-52 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene68182.t1 | AT1G75560 | 60.455 | 220 | 68 | 5 | 55 | 272 | 55 | 257 | 6.06e-86 | 257 |
MS.gene68182.t1 | AT1G75560 | 60.455 | 220 | 68 | 5 | 55 | 272 | 55 | 257 | 6.06e-86 | 257 |
MS.gene68182.t1 | AT4G36020 | 29.044 | 272 | 108 | 9 | 32 | 238 | 44 | 295 | 5.28e-18 | 82.4 |
MS.gene68182.t1 | AT4G36020 | 29.044 | 272 | 108 | 9 | 32 | 238 | 44 | 295 | 5.28e-18 | 82.4 |
MS.gene68182.t1 | AT4G36020 | 28.959 | 221 | 97 | 8 | 32 | 193 | 44 | 263 | 3.05e-15 | 73.9 |
Find 101 sgRNAs with CRISPR-Local
Find 206 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGCAATGTGTGCAATGTTTC+TGG | 0.171261 | 3.1:+92407345 | MS.gene68182:CDS |
ACATTGCACACATTGCAAAT+TGG | 0.240976 | 3.1:-92407339 | None:intergenic |
TCTCCAATAACGTCGGATTT+TGG | 0.258901 | 3.1:-92407387 | None:intergenic |
TGTCCAAAATCCGACGTTAT+TGG | 0.272950 | 3.1:+92407384 | MS.gene68182:CDS |
TGCCACAATTGTGGTCTTCC+AGG | 0.279746 | 3.1:+92406094 | MS.gene68182:CDS |
GGCCCTGCTTATAGCAATTA+TGG | 0.285159 | 3.1:-92407233 | None:intergenic |
TGCAATAATTGTAGGAAAAC+AGG | 0.288832 | 3.1:+92407288 | MS.gene68182:CDS |
ACATTGCAAATTGGGTCATT+TGG | 0.303614 | 3.1:-92407330 | None:intergenic |
TTGTGGCAAACCGCAACATT+AGG | 0.314490 | 3.1:-92406079 | None:intergenic |
CATTGCACACATTGCAAATT+GGG | 0.319988 | 3.1:-92407338 | None:intergenic |
GCCCTCATTTGGACAATTGC+TGG | 0.348692 | 3.1:-92407127 | None:intergenic |
ACCCTAGTAGGAGGTACTAA+TGG | 0.356165 | 3.1:+92407613 | MS.gene68182:CDS |
TTGGCATATGAGTGCCCTTC+AGG | 0.359293 | 3.1:+92407573 | MS.gene68182:CDS |
TGCCACACCTGTGGTAAAAC+TGG | 0.367658 | 3.1:+92407153 | MS.gene68182:CDS |
TGCAGGAACTGCCAGCAATT+TGG | 0.368408 | 3.1:+92407486 | MS.gene68182:CDS |
GGTGGTGGTGGTGTTGCTGC+TGG | 0.383192 | 3.1:+92407441 | MS.gene68182:CDS |
GATTGGTTTAAGGATGATCT+TGG | 0.384163 | 3.1:+92405473 | MS.gene68182:CDS |
TCAGCTCCATCACTGCCTCC+AGG | 0.400340 | 3.1:+92407195 | MS.gene68182:CDS |
GACTCATGTGACCAAATTGC+TGG | 0.414152 | 3.1:-92407497 | None:intergenic |
TGTGGCAAACCGCAACATTA+GGG | 0.414298 | 3.1:-92406078 | None:intergenic |
AGCAATTATGGCACAACCTT+AGG | 0.428281 | 3.1:-92407221 | None:intergenic |
AGCTTCCGTGGTGCTGGTGG+TGG | 0.429541 | 3.1:+92407426 | MS.gene68182:CDS |
ACCCATTAGTACCTCCTACT+AGG | 0.431893 | 3.1:-92407615 | None:intergenic |
GTGTGGCAAATGCCCTCATT+TGG | 0.436297 | 3.1:-92407138 | None:intergenic |
AGAAGGCTTGCAATAATTGT+AGG | 0.438057 | 3.1:+92407280 | MS.gene68182:CDS |
GGTGGTGTTGCTGCTGGTGG+TGG | 0.439125 | 3.1:+92407447 | MS.gene68182:CDS |
CAGCTCCATCACTGCCTCCA+GGG | 0.439506 | 3.1:+92407196 | MS.gene68182:CDS |
CACTGCCTCCAGGGGACCTA+AGG | 0.442515 | 3.1:+92407205 | MS.gene68182:CDS |
GTAAAACTGGCCACCGTGCT+AGG | 0.444767 | 3.1:+92407166 | MS.gene68182:CDS |
AGAGGCAGCTTCCGTGGTGC+TGG | 0.452093 | 3.1:+92407420 | MS.gene68182:CDS |
AGGTCCCCTGGAGGCAGTGA+TGG | 0.459660 | 3.1:-92407201 | None:intergenic |
TTCCGTGGTGCTGGTGGTGG+TGG | 0.461393 | 3.1:+92407429 | MS.gene68182:CDS |
TGTGTATGTTGTGGTGGAGG+TGG | 0.465293 | 3.1:+92405535 | MS.gene68182:CDS |
TCACATGAGTCGGGACTGCA+TGG | 0.471053 | 3.1:+92407509 | MS.gene68182:CDS |
GTGCCATAATTGCTATAAGC+AGG | 0.473079 | 3.1:+92407230 | MS.gene68182:CDS |
TGCTGGAATTGCAAAGAATC+TGG | 0.480642 | 3.1:+92407096 | MS.gene68182:CDS |
AGCTCCATCACTGCCTCCAG+GGG | 0.487991 | 3.1:+92407197 | MS.gene68182:CDS |
GCCACAATTGTGGTCTTCCA+GGG | 0.490979 | 3.1:+92406095 | MS.gene68182:CDS |
AGCAATTTGGTCACATGAGT+CGG | 0.491345 | 3.1:+92407499 | MS.gene68182:CDS |
GGTGGTGGTGTTGCTGCTGG+TGG | 0.497840 | 3.1:+92407444 | MS.gene68182:CDS |
ATTGGAGACCACAGAGGCAG+AGG | 0.500245 | 3.1:+92407402 | MS.gene68182:CDS |
GCAATTTGGTCACATGAGTC+GGG | 0.501366 | 3.1:+92407500 | MS.gene68182:CDS |
TGGCACAACCTTAGGTCCCC+TGG | 0.501822 | 3.1:-92407213 | None:intergenic |
TTGTGGATCGCTACCCTAGT+AGG | 0.503649 | 3.1:+92407601 | MS.gene68182:CDS |
ATTTGTGCAAGAACTGTAAG+AGG | 0.505203 | 3.1:+92406032 | MS.gene68182:CDS |
ATTCCAGCACACGGATTTCG+TGG | 0.510855 | 3.1:-92407082 | None:intergenic |
TTTAAGGATGATCTTGGATG+TGG | 0.515781 | 3.1:+92405479 | MS.gene68182:CDS |
GCTCCACGAAATCCGTGTGC+TGG | 0.517660 | 3.1:+92407079 | MS.gene68182:CDS |
TGTCATAATTGTGGAGGTCG+TGG | 0.518556 | 3.1:+92407546 | MS.gene68182:CDS |
GGCCAGCAATTGTCCAAATG+AGG | 0.519279 | 3.1:+92407125 | MS.gene68182:CDS |
TGCAAGAACTGTAAGAGGCC+TGG | 0.521551 | 3.1:+92406037 | MS.gene68182:CDS |
TTGATGATTTGTCATAATTG+TGG | 0.526195 | 3.1:+92407537 | MS.gene68182:CDS |
CCCATTAGTACCTCCTACTA+GGG | 0.531664 | 3.1:-92407614 | None:intergenic |
AGTTCTTGCACAAATTGTCT+CGG | 0.531667 | 3.1:-92406024 | None:intergenic |
CACATGAGTCGGGACTGCAT+GGG | 0.532181 | 3.1:+92407510 | MS.gene68182:CDS |
TTGTGGAGGTCGTGGTCACT+TGG | 0.535248 | 3.1:+92407554 | MS.gene68182:CDS |
CACCACCACCACCAGCACCA+CGG | 0.540558 | 3.1:-92407431 | None:intergenic |
ACAATTATGACAAATCATCA+AGG | 0.542498 | 3.1:-92407535 | None:intergenic |
ATGTGGACAGGAGGAGGCAG+TGG | 0.543541 | 3.1:+92405507 | MS.gene68182:CDS |
GATTGTGTATGTTGTGGTGG+AGG | 0.546696 | 3.1:+92405532 | MS.gene68182:CDS |
AGAGGCAGAGGCAGCTTCCG+TGG | 0.547129 | 3.1:+92407414 | MS.gene68182:CDS |
GATGTGGTTGTGATGTGGAC+AGG | 0.548211 | 3.1:+92405495 | MS.gene68182:CDS |
GTGCAATGTTTCTGGACACT+TGG | 0.553409 | 3.1:+92407353 | MS.gene68182:CDS |
TTCTTTGCAATTCCAGCACA+CGG | 0.554860 | 3.1:-92407091 | None:intergenic |
ACATGAGTCGGGACTGCATG+GGG | 0.562868 | 3.1:+92407511 | MS.gene68182:CDS |
TTGTAGGAAAACAGGGCACT+TGG | 0.571612 | 3.1:+92407296 | MS.gene68182:CDS |
GGCAGCTTCCGTGGTGCTGG+TGG | 0.577253 | 3.1:+92407423 | MS.gene68182:CDS |
TAAAACTGGCCACCGTGCTA+GGG | 0.581461 | 3.1:+92407167 | MS.gene68182:CDS |
CGATCCACAAAACGACCTGA+AGG | 0.581470 | 3.1:-92407588 | None:intergenic |
GTTACCGTGATGTCGTGTGC+AGG | 0.585031 | 3.1:+92407469 | MS.gene68182:CDS |
TTGCAAAGAATCTGGCCACA+TGG | 0.589813 | 3.1:+92407104 | MS.gene68182:CDS |
GTTGCGGTTTGCCACAATTG+TGG | 0.589836 | 3.1:+92406085 | MS.gene68182:CDS |
GCTGATTGTGTATGTTGTGG+TGG | 0.590661 | 3.1:+92405529 | MS.gene68182:CDS |
GTGGTTGTGATGTGGACAGG+AGG | 0.597193 | 3.1:+92405498 | MS.gene68182:CDS |
GCCAGCAATTGTCCAAATGA+GGG | 0.600151 | 3.1:+92407126 | MS.gene68182:CDS |
CATTCTCTAGCATAATGACC+AGG | 0.602340 | 3.1:-92406055 | None:intergenic |
GGAAGCTGCCTCTGCCTCTG+TGG | 0.603886 | 3.1:-92407410 | None:intergenic |
ATTATTGCAAGCCTTCTCGT+TGG | 0.611683 | 3.1:-92407274 | None:intergenic |
TGGAGGTGGTTGCTGATCAG+TGG | 0.614540 | 3.1:+92405549 | MS.gene68182:CDS |
TGCCATAATTGCTATAAGCA+GGG | 0.615274 | 3.1:+92407231 | MS.gene68182:CDS |
ACCCTGGAAGACCACAATTG+TGG | 0.615547 | 3.1:-92406096 | None:intergenic |
TAGAGAATGCCCTAATGTTG+CGG | 0.618296 | 3.1:+92406069 | MS.gene68182:CDS |
GTGGCTGATTGTGTATGTTG+TGG | 0.621304 | 3.1:+92405526 | MS.gene68182:CDS |
ATGATTTGTCATAATTGTGG+AGG | 0.621458 | 3.1:+92407540 | MS.gene68182:CDS |
TGTTGAATGTACCAACGAGA+AGG | 0.628565 | 3.1:+92407263 | MS.gene68182:CDS |
TCTTGGATGTGGTTGTGATG+TGG | 0.629449 | 3.1:+92405490 | MS.gene68182:CDS |
GTTGTGATGTGGACAGGAGG+AGG | 0.630696 | 3.1:+92405501 | MS.gene68182:CDS |
GAGCTGAGCACTCCCTAGCA+CGG | 0.630825 | 3.1:-92407179 | None:intergenic |
CAATTATGACAAATCATCAA+GGG | 0.632748 | 3.1:-92407534 | None:intergenic |
AGTTCCTGCACACGACATCA+CGG | 0.644450 | 3.1:-92407473 | None:intergenic |
GCAATAATTGTAGGAAAACA+GGG | 0.655669 | 3.1:+92407289 | MS.gene68182:CDS |
TGGATCGCTACCCTAGTAGG+AGG | 0.659785 | 3.1:+92407604 | MS.gene68182:CDS |
GATCCACAAAACGACCTGAA+GGG | 0.666668 | 3.1:-92407587 | None:intergenic |
GAGGGCATTTGCCACACCTG+TGG | 0.667696 | 3.1:+92407144 | MS.gene68182:CDS |
TTGGACAATTGCTGGCCATG+TGG | 0.668284 | 3.1:-92407119 | None:intergenic |
ATGTTATGAAGAATGTGACA+TGG | 0.672234 | 3.1:+92405319 | MS.gene68182:CDS |
TCTGTGGTCTCCAATAACGT+CGG | 0.680319 | 3.1:-92407394 | None:intergenic |
CACAACCTTAGGTCCCCTGG+AGG | 0.719764 | 3.1:-92407210 | None:intergenic |
TGGTACATTCAACAGCAATG+TGG | 0.725759 | 3.1:-92407254 | None:intergenic |
CTGAGCACTCCCTAGCACGG+TGG | 0.735482 | 3.1:-92407176 | None:intergenic |
GACGTTATTGGAGACCACAG+AGG | 0.762303 | 3.1:+92407396 | MS.gene68182:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ACAAAAAAAAAAACAAATTA+TGG | - | chr3.1:92406001-92406020 | None:intergenic | 10.0% |
!! | AAAAAAAAAAAATGAGCAAA+AGG | - | chr3.1:92406557-92406576 | None:intergenic | 15.0% |
!!! | TTTGGTTTTTATATTTTGAA+GGG | + | chr3.1:92405436-92405455 | MS.gene68182:intron | 15.0% |
!!! | TTTTGGTTTTTATATTTTGA+AGG | + | chr3.1:92405435-92405454 | MS.gene68182:intron | 15.0% |
!! | AAAACCATATTATTTGAGAA+CGG | - | chr3.1:92406583-92406602 | None:intergenic | 20.0% |
!! | AAATCAAATGAAGATTGTAA+AGG | - | chr3.1:92406782-92406801 | None:intergenic | 20.0% |
!! | AAATCTAAGAAAATCTATCT+AGG | - | chr3.1:92406339-92406358 | None:intergenic | 20.0% |
!! | AAATCTATGAAAGAAAATGT+AGG | - | chr3.1:92406315-92406334 | None:intergenic | 20.0% |
!! | ATATCAACTTTAATTATGCA+AGG | - | chr3.1:92406245-92406264 | None:intergenic | 20.0% |
!! | CATAAAAAGAGTAAATGAAT+GGG | - | chr3.1:92405883-92405902 | None:intergenic | 20.0% |
!! | CTTAAGTAAATTATTTATCG+CGG | + | chr3.1:92406176-92406195 | MS.gene68182:intron | 20.0% |
!! | TCATAAAAAGAGTAAATGAA+TGG | - | chr3.1:92405884-92405903 | None:intergenic | 20.0% |
!! | TGAAAATAAAACCATAATCT+AGG | - | chr3.1:92406615-92406634 | None:intergenic | 20.0% |
!! | TTATTTATTGAAGTGAAACA+AGG | - | chr3.1:92406754-92406773 | None:intergenic | 20.0% |
!!! | ACAATCTTCATTTGATTTTA+TGG | + | chr3.1:92406784-92406803 | MS.gene68182:intron | 20.0% |
!!! | AGATAGATTTTCTTAGATTT+TGG | + | chr3.1:92406339-92406358 | MS.gene68182:intron | 20.0% |
!!! | TGCATAATTAAAGTTGATAT+TGG | + | chr3.1:92406245-92406264 | MS.gene68182:intron | 20.0% |
!!! | TTGGTTTTTATATTTTGAAG+GGG | + | chr3.1:92405437-92405456 | MS.gene68182:intron | 20.0% |
!!! | TTGTTTTTTTCCAATCTTTT+CGG | - | chr3.1:92406718-92406737 | None:intergenic | 20.0% |
!!! | TTTTCCTTTTATGTTTAATC+AGG | + | chr3.1:92407040-92407059 | MS.gene68182:intron | 20.0% |
! | AATTCTTCAGAAGAAATGTA+AGG | - | chr3.1:92406385-92406404 | None:intergenic | 25.0% |
! | AATTTCATGTTCTATACTGT+TGG | + | chr3.1:92405410-92405429 | MS.gene68182:intron | 25.0% |
! | ACAAGATAACACAAATGAAT+TGG | - | chr3.1:92406462-92406481 | None:intergenic | 25.0% |
! | ACAATTATGACAAATCATCA+AGG | - | chr3.1:92407538-92407557 | None:intergenic | 25.0% |
! | CAATTATGACAAATCATCAA+GGG | - | chr3.1:92407537-92407556 | None:intergenic | 25.0% |
! | CACATATTCAAAATGTCAAA+TGG | - | chr3.1:92405958-92405977 | None:intergenic | 25.0% |
! | CTTTATAAACATGTCATTGA+AGG | + | chr3.1:92406659-92406678 | MS.gene68182:intron | 25.0% |
!! | TTGATGATTTGTCATAATTG+TGG | + | chr3.1:92407537-92407556 | MS.gene68182:CDS | 25.0% |
!! | TTTTCCGTTCTCAAATAATA+TGG | + | chr3.1:92406576-92406595 | MS.gene68182:intron | 25.0% |
AAATGTAGGTAAAGTTCACA+AGG | - | chr3.1:92406301-92406320 | None:intergenic | 30.0% | |
AATGTAGGTAAAGTTCACAA+GGG | - | chr3.1:92406300-92406319 | None:intergenic | 30.0% | |
ATGTTATGAAGAATGTGACA+TGG | + | chr3.1:92405319-92405338 | MS.gene68182:CDS | 30.0% | |
ATTTGAGTAGGTAAAGAGAA+TGG | - | chr3.1:92405764-92405783 | None:intergenic | 30.0% | |
CATCAGAATCAATAGGAAAA+CGG | - | chr3.1:92406819-92406838 | None:intergenic | 30.0% | |
CTCAGTTAAAAAAACAGAGA+CGG | - | chr3.1:92406130-92406149 | None:intergenic | 30.0% | |
GAGAAAATGACAACATAAAG+AGG | - | chr3.1:92406915-92406934 | None:intergenic | 30.0% | |
GCAATAATTGTAGGAAAACA+GGG | + | chr3.1:92407289-92407308 | MS.gene68182:CDS | 30.0% | |
TAGGTTTCTTGCTTCTTAAT+TGG | + | chr3.1:92406494-92406513 | MS.gene68182:intron | 30.0% | |
TATTTGCCATCAGAATCAAT+AGG | - | chr3.1:92406826-92406845 | None:intergenic | 30.0% | |
TGCAATAATTGTAGGAAAAC+AGG | + | chr3.1:92407288-92407307 | MS.gene68182:CDS | 30.0% | |
TGTGCCTGATTAAACATAAA+AGG | - | chr3.1:92407047-92407066 | None:intergenic | 30.0% | |
TTTCTTGCTTCTTAATTGGA+CGG | + | chr3.1:92406498-92406517 | MS.gene68182:intron | 30.0% | |
TTTGTGCCAACTCTTTAATT+TGG | + | chr3.1:92406218-92406237 | MS.gene68182:intron | 30.0% | |
! | AGTTTTTAACAGATTCATCG+TGG | + | chr3.1:92406269-92406288 | MS.gene68182:intron | 30.0% |
! | ATGATTTGTCATAATTGTGG+AGG | + | chr3.1:92407540-92407559 | MS.gene68182:CDS | 30.0% |
! | GTTCTATACTGTTGGAATTT+TGG | + | chr3.1:92405418-92405437 | MS.gene68182:intron | 30.0% |
!! | AAATGTACTGGTTAGGAATT+AGG | + | chr3.1:92405780-92405799 | MS.gene68182:intron | 30.0% |
!! | ATTTGATTTTATGGACGAGA+AGG | + | chr3.1:92406793-92406812 | MS.gene68182:intron | 30.0% |
!! | GTTTTTATATTTTGAAGGGG+AGG | + | chr3.1:92405440-92405459 | MS.gene68182:intron | 30.0% |
!! | TGTTACATTTTAGTCAAACG+AGG | - | chr3.1:92406855-92406874 | None:intergenic | 30.0% |
!! | TTGCTTTTGTTCCTAGATTA+TGG | + | chr3.1:92406601-92406620 | MS.gene68182:intron | 30.0% |
ACATTGCAAATTGGGTCATT+TGG | - | chr3.1:92407333-92407352 | None:intergenic | 35.0% | |
ACATTGCACACATTGCAAAT+TGG | - | chr3.1:92407342-92407361 | None:intergenic | 35.0% | |
AGAAGGCTTGCAATAATTGT+AGG | + | chr3.1:92407280-92407299 | MS.gene68182:CDS | 35.0% | |
AGTTCTTGCACAAATTGTCT+CGG | - | chr3.1:92406027-92406046 | None:intergenic | 35.0% | |
ATTTGTGCAAGAACTGTAAG+AGG | + | chr3.1:92406032-92406051 | MS.gene68182:CDS | 35.0% | |
CAAGGACCAAATTAAAGAGT+TGG | - | chr3.1:92406227-92406246 | None:intergenic | 35.0% | |
CATTGCACACATTGCAAATT+GGG | - | chr3.1:92407341-92407360 | None:intergenic | 35.0% | |
CTTTACCTACTCAAATGTAC+TGG | + | chr3.1:92405768-92405787 | MS.gene68182:intron | 35.0% | |
TAAATTATTTATCGCGGCGA+GGG | + | chr3.1:92406182-92406201 | MS.gene68182:intron | 35.0% | |
TGCCATAATTGCTATAAGCA+GGG | + | chr3.1:92407231-92407250 | MS.gene68182:CDS | 35.0% | |
TTTAAGGATGATCTTGGATG+TGG | + | chr3.1:92405479-92405498 | MS.gene68182:CDS | 35.0% | |
TTTGTGTTATCTTGTACCGT+TGG | + | chr3.1:92406467-92406486 | MS.gene68182:intron | 35.0% | |
! | TGAATTGGAAGTACATCCTA+AGG | - | chr3.1:92406447-92406466 | None:intergenic | 35.0% |
!! | AGAGTAAATGAATGGGCTAA+AGG | - | chr3.1:92405876-92405895 | None:intergenic | 35.0% |
!! | GATTGGTTTAAGGATGATCT+TGG | + | chr3.1:92405473-92405492 | MS.gene68182:CDS | 35.0% |
!! | TTTATATTTTGAAGGGGAGG+CGG | + | chr3.1:92405443-92405462 | MS.gene68182:intron | 35.0% |
!!! | CGTTTTCCTATTGATTCTGA+TGG | + | chr3.1:92406817-92406836 | MS.gene68182:intron | 35.0% |
!!! | GAGACTTGCTATCAAGTTTT+GGG | + | chr3.1:92405341-92405360 | MS.gene68182:intron | 35.0% |
AAAGAACTTATCAGAGCAGC+AGG | - | chr3.1:92405927-92405946 | None:intergenic | 40.0% | |
ACTCATCTGATGTCTCTTGA+AGG | - | chr3.1:92406692-92406711 | None:intergenic | 40.0% | |
AGCAATTATGGCACAACCTT+AGG | - | chr3.1:92407224-92407243 | None:intergenic | 40.0% | |
AGCAATTTGGTCACATGAGT+CGG | + | chr3.1:92407499-92407518 | MS.gene68182:CDS | 40.0% | |
AGGTAAAGTTCACAAGGGAA+TGG | - | chr3.1:92406295-92406314 | None:intergenic | 40.0% | |
ATTATTGCAAGCCTTCTCGT+TGG | - | chr3.1:92407277-92407296 | None:intergenic | 40.0% | |
CATTCTCTAGCATAATGACC+AGG | - | chr3.1:92406058-92406077 | None:intergenic | 40.0% | |
CCTAACCAGTACATTTGAGT+AGG | - | chr3.1:92405776-92405795 | None:intergenic | 40.0% | |
CTTACAGGAGAGATTCAAGT+CGG | + | chr3.1:92405704-92405723 | MS.gene68182:intron | 40.0% | |
GATGAGTTGTCCGAAAAGAT+TGG | + | chr3.1:92406705-92406724 | MS.gene68182:intron | 40.0% | |
GTAAATTATTTATCGCGGCG+AGG | + | chr3.1:92406181-92406200 | MS.gene68182:intron | 40.0% | |
GTGCCATAATTGCTATAAGC+AGG | + | chr3.1:92407230-92407249 | MS.gene68182:CDS | 40.0% | |
TACATCCTAAGGTGACATCA+TGG | - | chr3.1:92406436-92406455 | None:intergenic | 40.0% | |
TAGAGAATGCCCTAATGTTG+CGG | + | chr3.1:92406069-92406088 | MS.gene68182:CDS | 40.0% | |
TATGTGTGCATTTCTCACAG+CGG | + | chr3.1:92405972-92405991 | MS.gene68182:intron | 40.0% | |
TGACATGATTGATGCGAGAT+GGG | + | chr3.1:92405376-92405395 | MS.gene68182:intron | 40.0% | |
TGCAATGTGTGCAATGTTTC+TGG | + | chr3.1:92407345-92407364 | MS.gene68182:CDS | 40.0% | |
TGCTGGAATTGCAAAGAATC+TGG | + | chr3.1:92407096-92407115 | MS.gene68182:CDS | 40.0% | |
TGGTACATTCAACAGCAATG+TGG | - | chr3.1:92407257-92407276 | None:intergenic | 40.0% | |
TGTCCAAAATCCGACGTTAT+TGG | + | chr3.1:92407384-92407403 | MS.gene68182:CDS | 40.0% | |
TGTTGAATGTACCAACGAGA+AGG | + | chr3.1:92407263-92407282 | MS.gene68182:CDS | 40.0% | |
TTACAGGAGAGATTCAAGTC+GGG | + | chr3.1:92405705-92405724 | MS.gene68182:intron | 40.0% | |
TTCTTTGCAATTCCAGCACA+CGG | - | chr3.1:92407094-92407113 | None:intergenic | 40.0% | |
! | ATATTTGCTGACAAGTGTCG+TGG | + | chr3.1:92406977-92406996 | MS.gene68182:intron | 40.0% |
! | TCTCCAATAACGTCGGATTT+TGG | - | chr3.1:92407390-92407409 | None:intergenic | 40.0% |
!! | ATTGGACGGTGGTTGATTTT+AGG | + | chr3.1:92406512-92406531 | MS.gene68182:intron | 40.0% |
!! | CCTACTCAAATGTACTGGTT+AGG | + | chr3.1:92405773-92405792 | MS.gene68182:intron | 40.0% |
!! | GTACTGGTTAGGAATTAGGA+TGG | + | chr3.1:92405784-92405803 | MS.gene68182:intron | 40.0% |
!! | TTATATTTTGAAGGGGAGGC+GGG | + | chr3.1:92405444-92405463 | MS.gene68182:intron | 40.0% |
!!! | GGAGACTTGCTATCAAGTTT+TGG | + | chr3.1:92405340-92405359 | MS.gene68182:intron | 40.0% |
AAACAGTGCTGTGCTAGAAG+AGG | + | chr3.1:92405820-92405839 | MS.gene68182:intron | 45.0% | |
AATTGTGGTCTTCCAGGGTA+TGG | + | chr3.1:92406100-92406119 | MS.gene68182:intron | 45.0% | |
ACATCATGGACATGCAAGCA+AGG | - | chr3.1:92406422-92406441 | None:intergenic | 45.0% | |
AGCGAATCTTACGGATTCCT+GGG | - | chr3.1:92405657-92405676 | None:intergenic | 45.0% | |
CATGTCCATGATGTCACCTT+AGG | + | chr3.1:92406428-92406447 | MS.gene68182:intron | 45.0% | |
CGACTTGAATCTCTCCTGTA+AGG | - | chr3.1:92405706-92405725 | None:intergenic | 45.0% | |
CTTGCTTCTTAATTGGACGG+TGG | + | chr3.1:92406501-92406520 | MS.gene68182:intron | 45.0% | |
GACTCATGTGACCAAATTGC+TGG | - | chr3.1:92407500-92407519 | None:intergenic | 45.0% | |
GATCCACAAAACGACCTGAA+GGG | - | chr3.1:92407590-92407609 | None:intergenic | 45.0% | |
GATTGTGTATGTTGTGGTGG+AGG | + | chr3.1:92405532-92405551 | MS.gene68182:CDS | 45.0% | |
GCAAGAAACCTAAGCACCAA+CGG | - | chr3.1:92406486-92406505 | None:intergenic | 45.0% | |
GCAATTTGGTCACATGAGTC+GGG | + | chr3.1:92407500-92407519 | MS.gene68182:CDS | 45.0% | |
GCCAGCAATTGTCCAAATGA+GGG | + | chr3.1:92407126-92407145 | MS.gene68182:CDS | 45.0% | |
GCTGATTGTGTATGTTGTGG+TGG | + | chr3.1:92405529-92405548 | MS.gene68182:CDS | 45.0% | |
GGCCCTGCTTATAGCAATTA+TGG | - | chr3.1:92407236-92407255 | None:intergenic | 45.0% | |
GTCGATCAGAGCGAATCTTA+CGG | - | chr3.1:92405666-92405685 | None:intergenic | 45.0% | |
GTGACATGATTGATGCGAGA+TGG | + | chr3.1:92405375-92405394 | MS.gene68182:intron | 45.0% | |
GTGGCTGATTGTGTATGTTG+TGG | + | chr3.1:92405526-92405545 | MS.gene68182:CDS | 45.0% | |
TAAGGTATGTCCATGCTGAC+TGG | - | chr3.1:92406367-92406386 | None:intergenic | 45.0% | |
TACAGGAGAGATTCAAGTCG+GGG | + | chr3.1:92405706-92405725 | MS.gene68182:intron | 45.0% | |
TCAATCATGTCACCGTTCTC+AGG | - | chr3.1:92405368-92405387 | None:intergenic | 45.0% | |
TCTGTGGTCTCCAATAACGT+CGG | - | chr3.1:92407397-92407416 | None:intergenic | 45.0% | |
TCTTGGATGTGGTTGTGATG+TGG | + | chr3.1:92405490-92405509 | MS.gene68182:CDS | 45.0% | |
TGGTTAGGAATTAGGATGGC+TGG | + | chr3.1:92405788-92405807 | MS.gene68182:intron | 45.0% | |
TGTCATAATTGTGGAGGTCG+TGG | + | chr3.1:92407546-92407565 | MS.gene68182:CDS | 45.0% | |
TGTGGCAAACCGCAACATTA+GGG | - | chr3.1:92406081-92406100 | None:intergenic | 45.0% | |
TTGCAAAGAATCTGGCCACA+TGG | + | chr3.1:92407104-92407123 | MS.gene68182:CDS | 45.0% | |
TTGTGGCAAACCGCAACATT+AGG | - | chr3.1:92406082-92406101 | None:intergenic | 45.0% | |
! | ATCTTGTACCGTTGGTGCTT+AGG | + | chr3.1:92406475-92406494 | MS.gene68182:intron | 45.0% |
! | TTGTAGGAAAACAGGGCACT+TGG | + | chr3.1:92407296-92407315 | MS.gene68182:CDS | 45.0% |
!! | GATTTTGGTACCAGTCAGCA+TGG | + | chr3.1:92406354-92406373 | MS.gene68182:intron | 45.0% |
!! | GTGCAATGTTTCTGGACACT+TGG | + | chr3.1:92407353-92407372 | MS.gene68182:CDS | 45.0% |
!! | TATATTTTGAAGGGGAGGCG+GGG | + | chr3.1:92405445-92405464 | MS.gene68182:intron | 45.0% |
!!! | CAAGTTTTGGGTCCTGAGAA+CGG | + | chr3.1:92405353-92405372 | MS.gene68182:intron | 45.0% |
ACCCTGGAAGACCACAATTG+TGG | - | chr3.1:92406099-92406118 | None:intergenic | 50.0% | |
AGAGACGGAATTCCATACCC+TGG | - | chr3.1:92406115-92406134 | None:intergenic | 50.0% | |
AGTTCCTGCACACGACATCA+CGG | - | chr3.1:92407476-92407495 | None:intergenic | 50.0% | |
ATTCCAGCACACGGATTTCG+TGG | - | chr3.1:92407085-92407104 | None:intergenic | 50.0% | |
CGATCCACAAAACGACCTGA+AGG | - | chr3.1:92407591-92407610 | None:intergenic | 50.0% | |
GACGTTATTGGAGACCACAG+AGG | + | chr3.1:92407396-92407415 | MS.gene68182:CDS | 50.0% | |
GAGATTCAAGTCGGGGTTTC+AGG | + | chr3.1:92405713-92405732 | MS.gene68182:intron | 50.0% | |
GAGCGAATCTTACGGATTCC+TGG | - | chr3.1:92405658-92405677 | None:intergenic | 50.0% | |
GATGTGGTTGTGATGTGGAC+AGG | + | chr3.1:92405495-92405514 | MS.gene68182:CDS | 50.0% | |
GCCACAATTGTGGTCTTCCA+GGG | + | chr3.1:92406095-92406114 | MS.gene68182:CDS | 50.0% | |
GCCCTCATTTGGACAATTGC+TGG | - | chr3.1:92407130-92407149 | None:intergenic | 50.0% | |
GGCCAGCAATTGTCCAAATG+AGG | + | chr3.1:92407125-92407144 | MS.gene68182:CDS | 50.0% | |
GTGTGGCAAATGCCCTCATT+TGG | - | chr3.1:92407141-92407160 | None:intergenic | 50.0% | |
GTTGCGGTTTGCCACAATTG+TGG | + | chr3.1:92406085-92406104 | MS.gene68182:CDS | 50.0% | |
TAAAACTGGCCACCGTGCTA+GGG | + | chr3.1:92407167-92407186 | MS.gene68182:CDS | 50.0% | |
TGCAAGAACTGTAAGAGGCC+TGG | + | chr3.1:92406037-92406056 | MS.gene68182:CDS | 50.0% | |
TGCAGGAACTGCCAGCAATT+TGG | + | chr3.1:92407486-92407505 | MS.gene68182:CDS | 50.0% | |
TGCCACAATTGTGGTCTTCC+AGG | + | chr3.1:92406094-92406113 | MS.gene68182:CDS | 50.0% | |
TGCCACACCTGTGGTAAAAC+TGG | + | chr3.1:92407153-92407172 | MS.gene68182:CDS | 50.0% | |
TTGGACAATTGCTGGCCATG+TGG | - | chr3.1:92407122-92407141 | None:intergenic | 50.0% | |
TTGGCATATGAGTGCCCTTC+AGG | + | chr3.1:92407573-92407592 | MS.gene68182:CDS | 50.0% | |
TTGTGGATCGCTACCCTAGT+AGG | + | chr3.1:92407601-92407620 | MS.gene68182:CDS | 50.0% | |
! | TGTGTATGTTGTGGTGGAGG+TGG | + | chr3.1:92405535-92405554 | MS.gene68182:CDS | 50.0% |
!! | ATATTTTGAAGGGGAGGCGG+GGG | + | chr3.1:92405446-92405465 | MS.gene68182:intron | 50.0% |
!! | CGGGGGTTTGGATTGGTTTA+AGG | + | chr3.1:92405463-92405482 | MS.gene68182:CDS | 50.0% |
ACATGAGTCGGGACTGCATG+GGG | + | chr3.1:92407511-92407530 | MS.gene68182:CDS | 55.0% | |
ATTGGAGACCACAGAGGCAG+AGG | + | chr3.1:92407402-92407421 | MS.gene68182:CDS | 55.0% | |
CACATGAGTCGGGACTGCAT+GGG | + | chr3.1:92407510-92407529 | MS.gene68182:CDS | 55.0% | |
CCTATCGCGATGCTCCTTAC+AGG | + | chr3.1:92405689-92405708 | MS.gene68182:intron | 55.0% | |
GTAAAACTGGCCACCGTGCT+AGG | + | chr3.1:92407166-92407185 | MS.gene68182:CDS | 55.0% | |
GTGGTTGTGATGTGGACAGG+AGG | + | chr3.1:92405498-92405517 | MS.gene68182:CDS | 55.0% | |
GTTACCGTGATGTCGTGTGC+AGG | + | chr3.1:92407469-92407488 | MS.gene68182:CDS | 55.0% | |
GTTGTGATGTGGACAGGAGG+AGG | + | chr3.1:92405501-92405520 | MS.gene68182:CDS | 55.0% | |
TCACATGAGTCGGGACTGCA+TGG | + | chr3.1:92407509-92407528 | MS.gene68182:CDS | 55.0% | |
TGGAGGTGGTTGCTGATCAG+TGG | + | chr3.1:92405549-92405568 | MS.gene68182:CDS | 55.0% | |
TGGATCGCTACCCTAGTAGG+AGG | + | chr3.1:92407604-92407623 | MS.gene68182:CDS | 55.0% | |
TTCTGCTCCTGCTCCTGCTT+CGG | - | chr3.1:92405627-92405646 | None:intergenic | 55.0% | |
TTGTGGAGGTCGTGGTCACT+TGG | + | chr3.1:92407554-92407573 | MS.gene68182:CDS | 55.0% | |
! | ACGGTGGCCAGTTTTACCAC+AGG | - | chr3.1:92407163-92407182 | None:intergenic | 55.0% |
! | GGCCAGTTTTACCACAGGTG+TGG | - | chr3.1:92407158-92407177 | None:intergenic | 55.0% |
!! | CCTGTAAGGAGCATCGCGAT+AGG | - | chr3.1:92405692-92405711 | None:intergenic | 55.0% |
!! | GTGCCCTTCAGGTCGTTTTG+TGG | + | chr3.1:92407584-92407603 | MS.gene68182:CDS | 55.0% |
AGCTCCATCACTGCCTCCAG+GGG | + | chr3.1:92407197-92407216 | MS.gene68182:CDS | 60.0% | |
AGGAGCAGAAGTCGTAGCCC+AGG | + | chr3.1:92405637-92405656 | MS.gene68182:intron | 60.0% | |
ATGTGGACAGGAGGAGGCAG+TGG | + | chr3.1:92405507-92405526 | MS.gene68182:CDS | 60.0% | |
CACAACCTTAGGTCCCCTGG+AGG | - | chr3.1:92407213-92407232 | None:intergenic | 60.0% | |
CAGCTCCATCACTGCCTCCA+GGG | + | chr3.1:92407196-92407215 | MS.gene68182:CDS | 60.0% | |
GAGCTGAGCACTCCCTAGCA+CGG | - | chr3.1:92407182-92407201 | None:intergenic | 60.0% | |
GCTCCACGAAATCCGTGTGC+TGG | + | chr3.1:92407079-92407098 | MS.gene68182:CDS | 60.0% | |
TCAGCTCCATCACTGCCTCC+AGG | + | chr3.1:92407195-92407214 | MS.gene68182:CDS | 60.0% | |
TGAGTTCAGACAGCCGCAGC+CGG | + | chr3.1:92405599-92405618 | MS.gene68182:intron | 60.0% | |
TGGCACAACCTTAGGTCCCC+TGG | - | chr3.1:92407216-92407235 | None:intergenic | 60.0% | |
!! | GAGGGCATTTGCCACACCTG+TGG | + | chr3.1:92407144-92407163 | MS.gene68182:CDS | 60.0% |
AGAGGCAGAGGCAGCTTCCG+TGG | + | chr3.1:92407414-92407433 | MS.gene68182:CDS | 65.0% | |
AGAGGCAGCTTCCGTGGTGC+TGG | + | chr3.1:92407420-92407439 | MS.gene68182:CDS | 65.0% | |
AGGTCCCCTGGAGGCAGTGA+TGG | - | chr3.1:92407204-92407223 | None:intergenic | 65.0% | |
CACCACCACCACCAGCACCA+CGG | - | chr3.1:92407434-92407453 | None:intergenic | 65.0% | |
CACTGCCTCCAGGGGACCTA+AGG | + | chr3.1:92407205-92407224 | MS.gene68182:CDS | 65.0% | |
CTGAGCACTCCCTAGCACGG+TGG | - | chr3.1:92407179-92407198 | None:intergenic | 65.0% | |
GGAAGCTGCCTCTGCCTCTG+TGG | - | chr3.1:92407413-92407432 | None:intergenic | 65.0% | |
TCCTGCTCCTGCTTCGGCTC+CGG | - | chr3.1:92405621-92405640 | None:intergenic | 65.0% | |
TCGCGGCGAGGGATGCAAGT+TGG | + | chr3.1:92406193-92406212 | MS.gene68182:intron | 65.0% | |
TTGAAGGGGAGGCGGGGGTT+TGG | + | chr3.1:92405451-92405470 | MS.gene68182:intron | 65.0% | |
!! | AGCTTCCGTGGTGCTGGTGG+TGG | + | chr3.1:92407426-92407445 | MS.gene68182:CDS | 65.0% |
!! | GGTGGTGGTGGTGTTGCTGC+TGG | + | chr3.1:92407441-92407460 | MS.gene68182:CDS | 65.0% |
!! | GGTGGTGGTGTTGCTGCTGG+TGG | + | chr3.1:92407444-92407463 | MS.gene68182:CDS | 65.0% |
!! | GGTGGTGTTGCTGCTGGTGG+TGG | + | chr3.1:92407447-92407466 | MS.gene68182:CDS | 65.0% |
!! | TTCCGTGGTGCTGGTGGTGG+TGG | + | chr3.1:92407429-92407448 | MS.gene68182:CDS | 65.0% |
GGGGAGGCGGGGGTTTGGAT+TGG | + | chr3.1:92405456-92405475 | MS.gene68182:intron | 70.0% | |
TCCTGCTTCGGCTCCGGCTG+CGG | - | chr3.1:92405615-92405634 | None:intergenic | 70.0% | |
! | GGCAGCTTCCGTGGTGCTGG+TGG | + | chr3.1:92407423-92407442 | MS.gene68182:CDS | 70.0% |
GCCGGAGCCGAAGCAGGAGC+AGG | + | chr3.1:92405617-92405636 | MS.gene68182:intron | 75.0% | |
! | GCCGCAGCCGGAGCCGAAGC+AGG | + | chr3.1:92405611-92405630 | MS.gene68182:intron | 80.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.1 | gene | 92405315 | 92407632 | 92405315 | ID=MS.gene68182 |
chr3.1 | mRNA | 92405315 | 92407632 | 92405315 | ID=MS.gene68182.t1;Parent=MS.gene68182 |
chr3.1 | exon | 92405315 | 92405355 | 92405315 | ID=MS.gene68182.t1.exon1;Parent=MS.gene68182.t1 |
chr3.1 | CDS | 92405315 | 92405355 | 92405315 | ID=cds.MS.gene68182.t1;Parent=MS.gene68182.t1 |
chr3.1 | exon | 92405457 | 92405570 | 92405457 | ID=MS.gene68182.t1.exon2;Parent=MS.gene68182.t1 |
chr3.1 | CDS | 92405457 | 92405570 | 92405457 | ID=cds.MS.gene68182.t1;Parent=MS.gene68182.t1 |
chr3.1 | exon | 92406024 | 92406116 | 92406024 | ID=MS.gene68182.t1.exon3;Parent=MS.gene68182.t1 |
chr3.1 | CDS | 92406024 | 92406116 | 92406024 | ID=cds.MS.gene68182.t1;Parent=MS.gene68182.t1 |
chr3.1 | exon | 92407062 | 92407632 | 92407062 | ID=MS.gene68182.t1.exon4;Parent=MS.gene68182.t1 |
chr3.1 | CDS | 92407062 | 92407632 | 92407062 | ID=cds.MS.gene68182.t1;Parent=MS.gene68182.t1 |
Gene Sequence |
Protein sequence |