AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene68182


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene68182.t1 AT1G75560 60.455 220 68 5 55 272 55 257 6.06e-86 257
MS.gene68182.t1 AT1G75560 60.455 220 68 5 55 272 55 257 6.06e-86 257
MS.gene68182.t1 AT4G36020 29.044 272 108 9 32 238 44 295 5.28e-18 82.4
MS.gene68182.t1 AT4G36020 29.044 272 108 9 32 238 44 295 5.28e-18 82.4
MS.gene68182.t1 AT4G36020 28.959 221 97 8 32 193 44 263 3.05e-15 73.9

Find 101 sgRNAs with CRISPR-Local

Find 206 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCAATGTGTGCAATGTTTC+TGG 0.171261 3.1:+92407345 MS.gene68182:CDS
ACATTGCACACATTGCAAAT+TGG 0.240976 3.1:-92407339 None:intergenic
TCTCCAATAACGTCGGATTT+TGG 0.258901 3.1:-92407387 None:intergenic
TGTCCAAAATCCGACGTTAT+TGG 0.272950 3.1:+92407384 MS.gene68182:CDS
TGCCACAATTGTGGTCTTCC+AGG 0.279746 3.1:+92406094 MS.gene68182:CDS
GGCCCTGCTTATAGCAATTA+TGG 0.285159 3.1:-92407233 None:intergenic
TGCAATAATTGTAGGAAAAC+AGG 0.288832 3.1:+92407288 MS.gene68182:CDS
ACATTGCAAATTGGGTCATT+TGG 0.303614 3.1:-92407330 None:intergenic
TTGTGGCAAACCGCAACATT+AGG 0.314490 3.1:-92406079 None:intergenic
CATTGCACACATTGCAAATT+GGG 0.319988 3.1:-92407338 None:intergenic
GCCCTCATTTGGACAATTGC+TGG 0.348692 3.1:-92407127 None:intergenic
ACCCTAGTAGGAGGTACTAA+TGG 0.356165 3.1:+92407613 MS.gene68182:CDS
TTGGCATATGAGTGCCCTTC+AGG 0.359293 3.1:+92407573 MS.gene68182:CDS
TGCCACACCTGTGGTAAAAC+TGG 0.367658 3.1:+92407153 MS.gene68182:CDS
TGCAGGAACTGCCAGCAATT+TGG 0.368408 3.1:+92407486 MS.gene68182:CDS
GGTGGTGGTGGTGTTGCTGC+TGG 0.383192 3.1:+92407441 MS.gene68182:CDS
GATTGGTTTAAGGATGATCT+TGG 0.384163 3.1:+92405473 MS.gene68182:CDS
TCAGCTCCATCACTGCCTCC+AGG 0.400340 3.1:+92407195 MS.gene68182:CDS
GACTCATGTGACCAAATTGC+TGG 0.414152 3.1:-92407497 None:intergenic
TGTGGCAAACCGCAACATTA+GGG 0.414298 3.1:-92406078 None:intergenic
AGCAATTATGGCACAACCTT+AGG 0.428281 3.1:-92407221 None:intergenic
AGCTTCCGTGGTGCTGGTGG+TGG 0.429541 3.1:+92407426 MS.gene68182:CDS
ACCCATTAGTACCTCCTACT+AGG 0.431893 3.1:-92407615 None:intergenic
GTGTGGCAAATGCCCTCATT+TGG 0.436297 3.1:-92407138 None:intergenic
AGAAGGCTTGCAATAATTGT+AGG 0.438057 3.1:+92407280 MS.gene68182:CDS
GGTGGTGTTGCTGCTGGTGG+TGG 0.439125 3.1:+92407447 MS.gene68182:CDS
CAGCTCCATCACTGCCTCCA+GGG 0.439506 3.1:+92407196 MS.gene68182:CDS
CACTGCCTCCAGGGGACCTA+AGG 0.442515 3.1:+92407205 MS.gene68182:CDS
GTAAAACTGGCCACCGTGCT+AGG 0.444767 3.1:+92407166 MS.gene68182:CDS
AGAGGCAGCTTCCGTGGTGC+TGG 0.452093 3.1:+92407420 MS.gene68182:CDS
AGGTCCCCTGGAGGCAGTGA+TGG 0.459660 3.1:-92407201 None:intergenic
TTCCGTGGTGCTGGTGGTGG+TGG 0.461393 3.1:+92407429 MS.gene68182:CDS
TGTGTATGTTGTGGTGGAGG+TGG 0.465293 3.1:+92405535 MS.gene68182:CDS
TCACATGAGTCGGGACTGCA+TGG 0.471053 3.1:+92407509 MS.gene68182:CDS
GTGCCATAATTGCTATAAGC+AGG 0.473079 3.1:+92407230 MS.gene68182:CDS
TGCTGGAATTGCAAAGAATC+TGG 0.480642 3.1:+92407096 MS.gene68182:CDS
AGCTCCATCACTGCCTCCAG+GGG 0.487991 3.1:+92407197 MS.gene68182:CDS
GCCACAATTGTGGTCTTCCA+GGG 0.490979 3.1:+92406095 MS.gene68182:CDS
AGCAATTTGGTCACATGAGT+CGG 0.491345 3.1:+92407499 MS.gene68182:CDS
GGTGGTGGTGTTGCTGCTGG+TGG 0.497840 3.1:+92407444 MS.gene68182:CDS
ATTGGAGACCACAGAGGCAG+AGG 0.500245 3.1:+92407402 MS.gene68182:CDS
GCAATTTGGTCACATGAGTC+GGG 0.501366 3.1:+92407500 MS.gene68182:CDS
TGGCACAACCTTAGGTCCCC+TGG 0.501822 3.1:-92407213 None:intergenic
TTGTGGATCGCTACCCTAGT+AGG 0.503649 3.1:+92407601 MS.gene68182:CDS
ATTTGTGCAAGAACTGTAAG+AGG 0.505203 3.1:+92406032 MS.gene68182:CDS
ATTCCAGCACACGGATTTCG+TGG 0.510855 3.1:-92407082 None:intergenic
TTTAAGGATGATCTTGGATG+TGG 0.515781 3.1:+92405479 MS.gene68182:CDS
GCTCCACGAAATCCGTGTGC+TGG 0.517660 3.1:+92407079 MS.gene68182:CDS
TGTCATAATTGTGGAGGTCG+TGG 0.518556 3.1:+92407546 MS.gene68182:CDS
GGCCAGCAATTGTCCAAATG+AGG 0.519279 3.1:+92407125 MS.gene68182:CDS
TGCAAGAACTGTAAGAGGCC+TGG 0.521551 3.1:+92406037 MS.gene68182:CDS
TTGATGATTTGTCATAATTG+TGG 0.526195 3.1:+92407537 MS.gene68182:CDS
CCCATTAGTACCTCCTACTA+GGG 0.531664 3.1:-92407614 None:intergenic
AGTTCTTGCACAAATTGTCT+CGG 0.531667 3.1:-92406024 None:intergenic
CACATGAGTCGGGACTGCAT+GGG 0.532181 3.1:+92407510 MS.gene68182:CDS
TTGTGGAGGTCGTGGTCACT+TGG 0.535248 3.1:+92407554 MS.gene68182:CDS
CACCACCACCACCAGCACCA+CGG 0.540558 3.1:-92407431 None:intergenic
ACAATTATGACAAATCATCA+AGG 0.542498 3.1:-92407535 None:intergenic
ATGTGGACAGGAGGAGGCAG+TGG 0.543541 3.1:+92405507 MS.gene68182:CDS
GATTGTGTATGTTGTGGTGG+AGG 0.546696 3.1:+92405532 MS.gene68182:CDS
AGAGGCAGAGGCAGCTTCCG+TGG 0.547129 3.1:+92407414 MS.gene68182:CDS
GATGTGGTTGTGATGTGGAC+AGG 0.548211 3.1:+92405495 MS.gene68182:CDS
GTGCAATGTTTCTGGACACT+TGG 0.553409 3.1:+92407353 MS.gene68182:CDS
TTCTTTGCAATTCCAGCACA+CGG 0.554860 3.1:-92407091 None:intergenic
ACATGAGTCGGGACTGCATG+GGG 0.562868 3.1:+92407511 MS.gene68182:CDS
TTGTAGGAAAACAGGGCACT+TGG 0.571612 3.1:+92407296 MS.gene68182:CDS
GGCAGCTTCCGTGGTGCTGG+TGG 0.577253 3.1:+92407423 MS.gene68182:CDS
TAAAACTGGCCACCGTGCTA+GGG 0.581461 3.1:+92407167 MS.gene68182:CDS
CGATCCACAAAACGACCTGA+AGG 0.581470 3.1:-92407588 None:intergenic
GTTACCGTGATGTCGTGTGC+AGG 0.585031 3.1:+92407469 MS.gene68182:CDS
TTGCAAAGAATCTGGCCACA+TGG 0.589813 3.1:+92407104 MS.gene68182:CDS
GTTGCGGTTTGCCACAATTG+TGG 0.589836 3.1:+92406085 MS.gene68182:CDS
GCTGATTGTGTATGTTGTGG+TGG 0.590661 3.1:+92405529 MS.gene68182:CDS
GTGGTTGTGATGTGGACAGG+AGG 0.597193 3.1:+92405498 MS.gene68182:CDS
GCCAGCAATTGTCCAAATGA+GGG 0.600151 3.1:+92407126 MS.gene68182:CDS
CATTCTCTAGCATAATGACC+AGG 0.602340 3.1:-92406055 None:intergenic
GGAAGCTGCCTCTGCCTCTG+TGG 0.603886 3.1:-92407410 None:intergenic
ATTATTGCAAGCCTTCTCGT+TGG 0.611683 3.1:-92407274 None:intergenic
TGGAGGTGGTTGCTGATCAG+TGG 0.614540 3.1:+92405549 MS.gene68182:CDS
TGCCATAATTGCTATAAGCA+GGG 0.615274 3.1:+92407231 MS.gene68182:CDS
ACCCTGGAAGACCACAATTG+TGG 0.615547 3.1:-92406096 None:intergenic
TAGAGAATGCCCTAATGTTG+CGG 0.618296 3.1:+92406069 MS.gene68182:CDS
GTGGCTGATTGTGTATGTTG+TGG 0.621304 3.1:+92405526 MS.gene68182:CDS
ATGATTTGTCATAATTGTGG+AGG 0.621458 3.1:+92407540 MS.gene68182:CDS
TGTTGAATGTACCAACGAGA+AGG 0.628565 3.1:+92407263 MS.gene68182:CDS
TCTTGGATGTGGTTGTGATG+TGG 0.629449 3.1:+92405490 MS.gene68182:CDS
GTTGTGATGTGGACAGGAGG+AGG 0.630696 3.1:+92405501 MS.gene68182:CDS
GAGCTGAGCACTCCCTAGCA+CGG 0.630825 3.1:-92407179 None:intergenic
CAATTATGACAAATCATCAA+GGG 0.632748 3.1:-92407534 None:intergenic
AGTTCCTGCACACGACATCA+CGG 0.644450 3.1:-92407473 None:intergenic
GCAATAATTGTAGGAAAACA+GGG 0.655669 3.1:+92407289 MS.gene68182:CDS
TGGATCGCTACCCTAGTAGG+AGG 0.659785 3.1:+92407604 MS.gene68182:CDS
GATCCACAAAACGACCTGAA+GGG 0.666668 3.1:-92407587 None:intergenic
GAGGGCATTTGCCACACCTG+TGG 0.667696 3.1:+92407144 MS.gene68182:CDS
TTGGACAATTGCTGGCCATG+TGG 0.668284 3.1:-92407119 None:intergenic
ATGTTATGAAGAATGTGACA+TGG 0.672234 3.1:+92405319 MS.gene68182:CDS
TCTGTGGTCTCCAATAACGT+CGG 0.680319 3.1:-92407394 None:intergenic
CACAACCTTAGGTCCCCTGG+AGG 0.719764 3.1:-92407210 None:intergenic
TGGTACATTCAACAGCAATG+TGG 0.725759 3.1:-92407254 None:intergenic
CTGAGCACTCCCTAGCACGG+TGG 0.735482 3.1:-92407176 None:intergenic
GACGTTATTGGAGACCACAG+AGG 0.762303 3.1:+92407396 MS.gene68182:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACAAAAAAAAAAACAAATTA+TGG - chr3.1:92406001-92406020 None:intergenic 10.0%
!! AAAAAAAAAAAATGAGCAAA+AGG - chr3.1:92406557-92406576 None:intergenic 15.0%
!!! TTTGGTTTTTATATTTTGAA+GGG + chr3.1:92405436-92405455 MS.gene68182:intron 15.0%
!!! TTTTGGTTTTTATATTTTGA+AGG + chr3.1:92405435-92405454 MS.gene68182:intron 15.0%
!! AAAACCATATTATTTGAGAA+CGG - chr3.1:92406583-92406602 None:intergenic 20.0%
!! AAATCAAATGAAGATTGTAA+AGG - chr3.1:92406782-92406801 None:intergenic 20.0%
!! AAATCTAAGAAAATCTATCT+AGG - chr3.1:92406339-92406358 None:intergenic 20.0%
!! AAATCTATGAAAGAAAATGT+AGG - chr3.1:92406315-92406334 None:intergenic 20.0%
!! ATATCAACTTTAATTATGCA+AGG - chr3.1:92406245-92406264 None:intergenic 20.0%
!! CATAAAAAGAGTAAATGAAT+GGG - chr3.1:92405883-92405902 None:intergenic 20.0%
!! CTTAAGTAAATTATTTATCG+CGG + chr3.1:92406176-92406195 MS.gene68182:intron 20.0%
!! TCATAAAAAGAGTAAATGAA+TGG - chr3.1:92405884-92405903 None:intergenic 20.0%
!! TGAAAATAAAACCATAATCT+AGG - chr3.1:92406615-92406634 None:intergenic 20.0%
!! TTATTTATTGAAGTGAAACA+AGG - chr3.1:92406754-92406773 None:intergenic 20.0%
!!! ACAATCTTCATTTGATTTTA+TGG + chr3.1:92406784-92406803 MS.gene68182:intron 20.0%
!!! AGATAGATTTTCTTAGATTT+TGG + chr3.1:92406339-92406358 MS.gene68182:intron 20.0%
!!! TGCATAATTAAAGTTGATAT+TGG + chr3.1:92406245-92406264 MS.gene68182:intron 20.0%
!!! TTGGTTTTTATATTTTGAAG+GGG + chr3.1:92405437-92405456 MS.gene68182:intron 20.0%
!!! TTGTTTTTTTCCAATCTTTT+CGG - chr3.1:92406718-92406737 None:intergenic 20.0%
!!! TTTTCCTTTTATGTTTAATC+AGG + chr3.1:92407040-92407059 MS.gene68182:intron 20.0%
! AATTCTTCAGAAGAAATGTA+AGG - chr3.1:92406385-92406404 None:intergenic 25.0%
! AATTTCATGTTCTATACTGT+TGG + chr3.1:92405410-92405429 MS.gene68182:intron 25.0%
! ACAAGATAACACAAATGAAT+TGG - chr3.1:92406462-92406481 None:intergenic 25.0%
! ACAATTATGACAAATCATCA+AGG - chr3.1:92407538-92407557 None:intergenic 25.0%
! CAATTATGACAAATCATCAA+GGG - chr3.1:92407537-92407556 None:intergenic 25.0%
! CACATATTCAAAATGTCAAA+TGG - chr3.1:92405958-92405977 None:intergenic 25.0%
! CTTTATAAACATGTCATTGA+AGG + chr3.1:92406659-92406678 MS.gene68182:intron 25.0%
!! TTGATGATTTGTCATAATTG+TGG + chr3.1:92407537-92407556 MS.gene68182:CDS 25.0%
!! TTTTCCGTTCTCAAATAATA+TGG + chr3.1:92406576-92406595 MS.gene68182:intron 25.0%
AAATGTAGGTAAAGTTCACA+AGG - chr3.1:92406301-92406320 None:intergenic 30.0%
AATGTAGGTAAAGTTCACAA+GGG - chr3.1:92406300-92406319 None:intergenic 30.0%
ATGTTATGAAGAATGTGACA+TGG + chr3.1:92405319-92405338 MS.gene68182:CDS 30.0%
ATTTGAGTAGGTAAAGAGAA+TGG - chr3.1:92405764-92405783 None:intergenic 30.0%
CATCAGAATCAATAGGAAAA+CGG - chr3.1:92406819-92406838 None:intergenic 30.0%
CTCAGTTAAAAAAACAGAGA+CGG - chr3.1:92406130-92406149 None:intergenic 30.0%
GAGAAAATGACAACATAAAG+AGG - chr3.1:92406915-92406934 None:intergenic 30.0%
GCAATAATTGTAGGAAAACA+GGG + chr3.1:92407289-92407308 MS.gene68182:CDS 30.0%
TAGGTTTCTTGCTTCTTAAT+TGG + chr3.1:92406494-92406513 MS.gene68182:intron 30.0%
TATTTGCCATCAGAATCAAT+AGG - chr3.1:92406826-92406845 None:intergenic 30.0%
TGCAATAATTGTAGGAAAAC+AGG + chr3.1:92407288-92407307 MS.gene68182:CDS 30.0%
TGTGCCTGATTAAACATAAA+AGG - chr3.1:92407047-92407066 None:intergenic 30.0%
TTTCTTGCTTCTTAATTGGA+CGG + chr3.1:92406498-92406517 MS.gene68182:intron 30.0%
TTTGTGCCAACTCTTTAATT+TGG + chr3.1:92406218-92406237 MS.gene68182:intron 30.0%
! AGTTTTTAACAGATTCATCG+TGG + chr3.1:92406269-92406288 MS.gene68182:intron 30.0%
! ATGATTTGTCATAATTGTGG+AGG + chr3.1:92407540-92407559 MS.gene68182:CDS 30.0%
! GTTCTATACTGTTGGAATTT+TGG + chr3.1:92405418-92405437 MS.gene68182:intron 30.0%
!! AAATGTACTGGTTAGGAATT+AGG + chr3.1:92405780-92405799 MS.gene68182:intron 30.0%
!! ATTTGATTTTATGGACGAGA+AGG + chr3.1:92406793-92406812 MS.gene68182:intron 30.0%
!! GTTTTTATATTTTGAAGGGG+AGG + chr3.1:92405440-92405459 MS.gene68182:intron 30.0%
!! TGTTACATTTTAGTCAAACG+AGG - chr3.1:92406855-92406874 None:intergenic 30.0%
!! TTGCTTTTGTTCCTAGATTA+TGG + chr3.1:92406601-92406620 MS.gene68182:intron 30.0%
ACATTGCAAATTGGGTCATT+TGG - chr3.1:92407333-92407352 None:intergenic 35.0%
ACATTGCACACATTGCAAAT+TGG - chr3.1:92407342-92407361 None:intergenic 35.0%
AGAAGGCTTGCAATAATTGT+AGG + chr3.1:92407280-92407299 MS.gene68182:CDS 35.0%
AGTTCTTGCACAAATTGTCT+CGG - chr3.1:92406027-92406046 None:intergenic 35.0%
ATTTGTGCAAGAACTGTAAG+AGG + chr3.1:92406032-92406051 MS.gene68182:CDS 35.0%
CAAGGACCAAATTAAAGAGT+TGG - chr3.1:92406227-92406246 None:intergenic 35.0%
CATTGCACACATTGCAAATT+GGG - chr3.1:92407341-92407360 None:intergenic 35.0%
CTTTACCTACTCAAATGTAC+TGG + chr3.1:92405768-92405787 MS.gene68182:intron 35.0%
TAAATTATTTATCGCGGCGA+GGG + chr3.1:92406182-92406201 MS.gene68182:intron 35.0%
TGCCATAATTGCTATAAGCA+GGG + chr3.1:92407231-92407250 MS.gene68182:CDS 35.0%
TTTAAGGATGATCTTGGATG+TGG + chr3.1:92405479-92405498 MS.gene68182:CDS 35.0%
TTTGTGTTATCTTGTACCGT+TGG + chr3.1:92406467-92406486 MS.gene68182:intron 35.0%
! TGAATTGGAAGTACATCCTA+AGG - chr3.1:92406447-92406466 None:intergenic 35.0%
!! AGAGTAAATGAATGGGCTAA+AGG - chr3.1:92405876-92405895 None:intergenic 35.0%
!! GATTGGTTTAAGGATGATCT+TGG + chr3.1:92405473-92405492 MS.gene68182:CDS 35.0%
!! TTTATATTTTGAAGGGGAGG+CGG + chr3.1:92405443-92405462 MS.gene68182:intron 35.0%
!!! CGTTTTCCTATTGATTCTGA+TGG + chr3.1:92406817-92406836 MS.gene68182:intron 35.0%
!!! GAGACTTGCTATCAAGTTTT+GGG + chr3.1:92405341-92405360 MS.gene68182:intron 35.0%
AAAGAACTTATCAGAGCAGC+AGG - chr3.1:92405927-92405946 None:intergenic 40.0%
ACTCATCTGATGTCTCTTGA+AGG - chr3.1:92406692-92406711 None:intergenic 40.0%
AGCAATTATGGCACAACCTT+AGG - chr3.1:92407224-92407243 None:intergenic 40.0%
AGCAATTTGGTCACATGAGT+CGG + chr3.1:92407499-92407518 MS.gene68182:CDS 40.0%
AGGTAAAGTTCACAAGGGAA+TGG - chr3.1:92406295-92406314 None:intergenic 40.0%
ATTATTGCAAGCCTTCTCGT+TGG - chr3.1:92407277-92407296 None:intergenic 40.0%
CATTCTCTAGCATAATGACC+AGG - chr3.1:92406058-92406077 None:intergenic 40.0%
CCTAACCAGTACATTTGAGT+AGG - chr3.1:92405776-92405795 None:intergenic 40.0%
CTTACAGGAGAGATTCAAGT+CGG + chr3.1:92405704-92405723 MS.gene68182:intron 40.0%
GATGAGTTGTCCGAAAAGAT+TGG + chr3.1:92406705-92406724 MS.gene68182:intron 40.0%
GTAAATTATTTATCGCGGCG+AGG + chr3.1:92406181-92406200 MS.gene68182:intron 40.0%
GTGCCATAATTGCTATAAGC+AGG + chr3.1:92407230-92407249 MS.gene68182:CDS 40.0%
TACATCCTAAGGTGACATCA+TGG - chr3.1:92406436-92406455 None:intergenic 40.0%
TAGAGAATGCCCTAATGTTG+CGG + chr3.1:92406069-92406088 MS.gene68182:CDS 40.0%
TATGTGTGCATTTCTCACAG+CGG + chr3.1:92405972-92405991 MS.gene68182:intron 40.0%
TGACATGATTGATGCGAGAT+GGG + chr3.1:92405376-92405395 MS.gene68182:intron 40.0%
TGCAATGTGTGCAATGTTTC+TGG + chr3.1:92407345-92407364 MS.gene68182:CDS 40.0%
TGCTGGAATTGCAAAGAATC+TGG + chr3.1:92407096-92407115 MS.gene68182:CDS 40.0%
TGGTACATTCAACAGCAATG+TGG - chr3.1:92407257-92407276 None:intergenic 40.0%
TGTCCAAAATCCGACGTTAT+TGG + chr3.1:92407384-92407403 MS.gene68182:CDS 40.0%
TGTTGAATGTACCAACGAGA+AGG + chr3.1:92407263-92407282 MS.gene68182:CDS 40.0%
TTACAGGAGAGATTCAAGTC+GGG + chr3.1:92405705-92405724 MS.gene68182:intron 40.0%
TTCTTTGCAATTCCAGCACA+CGG - chr3.1:92407094-92407113 None:intergenic 40.0%
! ATATTTGCTGACAAGTGTCG+TGG + chr3.1:92406977-92406996 MS.gene68182:intron 40.0%
! TCTCCAATAACGTCGGATTT+TGG - chr3.1:92407390-92407409 None:intergenic 40.0%
!! ATTGGACGGTGGTTGATTTT+AGG + chr3.1:92406512-92406531 MS.gene68182:intron 40.0%
!! CCTACTCAAATGTACTGGTT+AGG + chr3.1:92405773-92405792 MS.gene68182:intron 40.0%
!! GTACTGGTTAGGAATTAGGA+TGG + chr3.1:92405784-92405803 MS.gene68182:intron 40.0%
!! TTATATTTTGAAGGGGAGGC+GGG + chr3.1:92405444-92405463 MS.gene68182:intron 40.0%
!!! GGAGACTTGCTATCAAGTTT+TGG + chr3.1:92405340-92405359 MS.gene68182:intron 40.0%
AAACAGTGCTGTGCTAGAAG+AGG + chr3.1:92405820-92405839 MS.gene68182:intron 45.0%
AATTGTGGTCTTCCAGGGTA+TGG + chr3.1:92406100-92406119 MS.gene68182:intron 45.0%
ACATCATGGACATGCAAGCA+AGG - chr3.1:92406422-92406441 None:intergenic 45.0%
AGCGAATCTTACGGATTCCT+GGG - chr3.1:92405657-92405676 None:intergenic 45.0%
CATGTCCATGATGTCACCTT+AGG + chr3.1:92406428-92406447 MS.gene68182:intron 45.0%
CGACTTGAATCTCTCCTGTA+AGG - chr3.1:92405706-92405725 None:intergenic 45.0%
CTTGCTTCTTAATTGGACGG+TGG + chr3.1:92406501-92406520 MS.gene68182:intron 45.0%
GACTCATGTGACCAAATTGC+TGG - chr3.1:92407500-92407519 None:intergenic 45.0%
GATCCACAAAACGACCTGAA+GGG - chr3.1:92407590-92407609 None:intergenic 45.0%
GATTGTGTATGTTGTGGTGG+AGG + chr3.1:92405532-92405551 MS.gene68182:CDS 45.0%
GCAAGAAACCTAAGCACCAA+CGG - chr3.1:92406486-92406505 None:intergenic 45.0%
GCAATTTGGTCACATGAGTC+GGG + chr3.1:92407500-92407519 MS.gene68182:CDS 45.0%
GCCAGCAATTGTCCAAATGA+GGG + chr3.1:92407126-92407145 MS.gene68182:CDS 45.0%
GCTGATTGTGTATGTTGTGG+TGG + chr3.1:92405529-92405548 MS.gene68182:CDS 45.0%
GGCCCTGCTTATAGCAATTA+TGG - chr3.1:92407236-92407255 None:intergenic 45.0%
GTCGATCAGAGCGAATCTTA+CGG - chr3.1:92405666-92405685 None:intergenic 45.0%
GTGACATGATTGATGCGAGA+TGG + chr3.1:92405375-92405394 MS.gene68182:intron 45.0%
GTGGCTGATTGTGTATGTTG+TGG + chr3.1:92405526-92405545 MS.gene68182:CDS 45.0%
TAAGGTATGTCCATGCTGAC+TGG - chr3.1:92406367-92406386 None:intergenic 45.0%
TACAGGAGAGATTCAAGTCG+GGG + chr3.1:92405706-92405725 MS.gene68182:intron 45.0%
TCAATCATGTCACCGTTCTC+AGG - chr3.1:92405368-92405387 None:intergenic 45.0%
TCTGTGGTCTCCAATAACGT+CGG - chr3.1:92407397-92407416 None:intergenic 45.0%
TCTTGGATGTGGTTGTGATG+TGG + chr3.1:92405490-92405509 MS.gene68182:CDS 45.0%
TGGTTAGGAATTAGGATGGC+TGG + chr3.1:92405788-92405807 MS.gene68182:intron 45.0%
TGTCATAATTGTGGAGGTCG+TGG + chr3.1:92407546-92407565 MS.gene68182:CDS 45.0%
TGTGGCAAACCGCAACATTA+GGG - chr3.1:92406081-92406100 None:intergenic 45.0%
TTGCAAAGAATCTGGCCACA+TGG + chr3.1:92407104-92407123 MS.gene68182:CDS 45.0%
TTGTGGCAAACCGCAACATT+AGG - chr3.1:92406082-92406101 None:intergenic 45.0%
! ATCTTGTACCGTTGGTGCTT+AGG + chr3.1:92406475-92406494 MS.gene68182:intron 45.0%
! TTGTAGGAAAACAGGGCACT+TGG + chr3.1:92407296-92407315 MS.gene68182:CDS 45.0%
!! GATTTTGGTACCAGTCAGCA+TGG + chr3.1:92406354-92406373 MS.gene68182:intron 45.0%
!! GTGCAATGTTTCTGGACACT+TGG + chr3.1:92407353-92407372 MS.gene68182:CDS 45.0%
!! TATATTTTGAAGGGGAGGCG+GGG + chr3.1:92405445-92405464 MS.gene68182:intron 45.0%
!!! CAAGTTTTGGGTCCTGAGAA+CGG + chr3.1:92405353-92405372 MS.gene68182:intron 45.0%
ACCCTGGAAGACCACAATTG+TGG - chr3.1:92406099-92406118 None:intergenic 50.0%
AGAGACGGAATTCCATACCC+TGG - chr3.1:92406115-92406134 None:intergenic 50.0%
AGTTCCTGCACACGACATCA+CGG - chr3.1:92407476-92407495 None:intergenic 50.0%
ATTCCAGCACACGGATTTCG+TGG - chr3.1:92407085-92407104 None:intergenic 50.0%
CGATCCACAAAACGACCTGA+AGG - chr3.1:92407591-92407610 None:intergenic 50.0%
GACGTTATTGGAGACCACAG+AGG + chr3.1:92407396-92407415 MS.gene68182:CDS 50.0%
GAGATTCAAGTCGGGGTTTC+AGG + chr3.1:92405713-92405732 MS.gene68182:intron 50.0%
GAGCGAATCTTACGGATTCC+TGG - chr3.1:92405658-92405677 None:intergenic 50.0%
GATGTGGTTGTGATGTGGAC+AGG + chr3.1:92405495-92405514 MS.gene68182:CDS 50.0%
GCCACAATTGTGGTCTTCCA+GGG + chr3.1:92406095-92406114 MS.gene68182:CDS 50.0%
GCCCTCATTTGGACAATTGC+TGG - chr3.1:92407130-92407149 None:intergenic 50.0%
GGCCAGCAATTGTCCAAATG+AGG + chr3.1:92407125-92407144 MS.gene68182:CDS 50.0%
GTGTGGCAAATGCCCTCATT+TGG - chr3.1:92407141-92407160 None:intergenic 50.0%
GTTGCGGTTTGCCACAATTG+TGG + chr3.1:92406085-92406104 MS.gene68182:CDS 50.0%
TAAAACTGGCCACCGTGCTA+GGG + chr3.1:92407167-92407186 MS.gene68182:CDS 50.0%
TGCAAGAACTGTAAGAGGCC+TGG + chr3.1:92406037-92406056 MS.gene68182:CDS 50.0%
TGCAGGAACTGCCAGCAATT+TGG + chr3.1:92407486-92407505 MS.gene68182:CDS 50.0%
TGCCACAATTGTGGTCTTCC+AGG + chr3.1:92406094-92406113 MS.gene68182:CDS 50.0%
TGCCACACCTGTGGTAAAAC+TGG + chr3.1:92407153-92407172 MS.gene68182:CDS 50.0%
TTGGACAATTGCTGGCCATG+TGG - chr3.1:92407122-92407141 None:intergenic 50.0%
TTGGCATATGAGTGCCCTTC+AGG + chr3.1:92407573-92407592 MS.gene68182:CDS 50.0%
TTGTGGATCGCTACCCTAGT+AGG + chr3.1:92407601-92407620 MS.gene68182:CDS 50.0%
! TGTGTATGTTGTGGTGGAGG+TGG + chr3.1:92405535-92405554 MS.gene68182:CDS 50.0%
!! ATATTTTGAAGGGGAGGCGG+GGG + chr3.1:92405446-92405465 MS.gene68182:intron 50.0%
!! CGGGGGTTTGGATTGGTTTA+AGG + chr3.1:92405463-92405482 MS.gene68182:CDS 50.0%
ACATGAGTCGGGACTGCATG+GGG + chr3.1:92407511-92407530 MS.gene68182:CDS 55.0%
ATTGGAGACCACAGAGGCAG+AGG + chr3.1:92407402-92407421 MS.gene68182:CDS 55.0%
CACATGAGTCGGGACTGCAT+GGG + chr3.1:92407510-92407529 MS.gene68182:CDS 55.0%
CCTATCGCGATGCTCCTTAC+AGG + chr3.1:92405689-92405708 MS.gene68182:intron 55.0%
GTAAAACTGGCCACCGTGCT+AGG + chr3.1:92407166-92407185 MS.gene68182:CDS 55.0%
GTGGTTGTGATGTGGACAGG+AGG + chr3.1:92405498-92405517 MS.gene68182:CDS 55.0%
GTTACCGTGATGTCGTGTGC+AGG + chr3.1:92407469-92407488 MS.gene68182:CDS 55.0%
GTTGTGATGTGGACAGGAGG+AGG + chr3.1:92405501-92405520 MS.gene68182:CDS 55.0%
TCACATGAGTCGGGACTGCA+TGG + chr3.1:92407509-92407528 MS.gene68182:CDS 55.0%
TGGAGGTGGTTGCTGATCAG+TGG + chr3.1:92405549-92405568 MS.gene68182:CDS 55.0%
TGGATCGCTACCCTAGTAGG+AGG + chr3.1:92407604-92407623 MS.gene68182:CDS 55.0%
TTCTGCTCCTGCTCCTGCTT+CGG - chr3.1:92405627-92405646 None:intergenic 55.0%
TTGTGGAGGTCGTGGTCACT+TGG + chr3.1:92407554-92407573 MS.gene68182:CDS 55.0%
! ACGGTGGCCAGTTTTACCAC+AGG - chr3.1:92407163-92407182 None:intergenic 55.0%
! GGCCAGTTTTACCACAGGTG+TGG - chr3.1:92407158-92407177 None:intergenic 55.0%
!! CCTGTAAGGAGCATCGCGAT+AGG - chr3.1:92405692-92405711 None:intergenic 55.0%
!! GTGCCCTTCAGGTCGTTTTG+TGG + chr3.1:92407584-92407603 MS.gene68182:CDS 55.0%
AGCTCCATCACTGCCTCCAG+GGG + chr3.1:92407197-92407216 MS.gene68182:CDS 60.0%
AGGAGCAGAAGTCGTAGCCC+AGG + chr3.1:92405637-92405656 MS.gene68182:intron 60.0%
ATGTGGACAGGAGGAGGCAG+TGG + chr3.1:92405507-92405526 MS.gene68182:CDS 60.0%
CACAACCTTAGGTCCCCTGG+AGG - chr3.1:92407213-92407232 None:intergenic 60.0%
CAGCTCCATCACTGCCTCCA+GGG + chr3.1:92407196-92407215 MS.gene68182:CDS 60.0%
GAGCTGAGCACTCCCTAGCA+CGG - chr3.1:92407182-92407201 None:intergenic 60.0%
GCTCCACGAAATCCGTGTGC+TGG + chr3.1:92407079-92407098 MS.gene68182:CDS 60.0%
TCAGCTCCATCACTGCCTCC+AGG + chr3.1:92407195-92407214 MS.gene68182:CDS 60.0%
TGAGTTCAGACAGCCGCAGC+CGG + chr3.1:92405599-92405618 MS.gene68182:intron 60.0%
TGGCACAACCTTAGGTCCCC+TGG - chr3.1:92407216-92407235 None:intergenic 60.0%
!! GAGGGCATTTGCCACACCTG+TGG + chr3.1:92407144-92407163 MS.gene68182:CDS 60.0%
AGAGGCAGAGGCAGCTTCCG+TGG + chr3.1:92407414-92407433 MS.gene68182:CDS 65.0%
AGAGGCAGCTTCCGTGGTGC+TGG + chr3.1:92407420-92407439 MS.gene68182:CDS 65.0%
AGGTCCCCTGGAGGCAGTGA+TGG - chr3.1:92407204-92407223 None:intergenic 65.0%
CACCACCACCACCAGCACCA+CGG - chr3.1:92407434-92407453 None:intergenic 65.0%
CACTGCCTCCAGGGGACCTA+AGG + chr3.1:92407205-92407224 MS.gene68182:CDS 65.0%
CTGAGCACTCCCTAGCACGG+TGG - chr3.1:92407179-92407198 None:intergenic 65.0%
GGAAGCTGCCTCTGCCTCTG+TGG - chr3.1:92407413-92407432 None:intergenic 65.0%
TCCTGCTCCTGCTTCGGCTC+CGG - chr3.1:92405621-92405640 None:intergenic 65.0%
TCGCGGCGAGGGATGCAAGT+TGG + chr3.1:92406193-92406212 MS.gene68182:intron 65.0%
TTGAAGGGGAGGCGGGGGTT+TGG + chr3.1:92405451-92405470 MS.gene68182:intron 65.0%
!! AGCTTCCGTGGTGCTGGTGG+TGG + chr3.1:92407426-92407445 MS.gene68182:CDS 65.0%
!! GGTGGTGGTGGTGTTGCTGC+TGG + chr3.1:92407441-92407460 MS.gene68182:CDS 65.0%
!! GGTGGTGGTGTTGCTGCTGG+TGG + chr3.1:92407444-92407463 MS.gene68182:CDS 65.0%
!! GGTGGTGTTGCTGCTGGTGG+TGG + chr3.1:92407447-92407466 MS.gene68182:CDS 65.0%
!! TTCCGTGGTGCTGGTGGTGG+TGG + chr3.1:92407429-92407448 MS.gene68182:CDS 65.0%
GGGGAGGCGGGGGTTTGGAT+TGG + chr3.1:92405456-92405475 MS.gene68182:intron 70.0%
TCCTGCTTCGGCTCCGGCTG+CGG - chr3.1:92405615-92405634 None:intergenic 70.0%
! GGCAGCTTCCGTGGTGCTGG+TGG + chr3.1:92407423-92407442 MS.gene68182:CDS 70.0%
GCCGGAGCCGAAGCAGGAGC+AGG + chr3.1:92405617-92405636 MS.gene68182:intron 75.0%
! GCCGCAGCCGGAGCCGAAGC+AGG + chr3.1:92405611-92405630 MS.gene68182:intron 80.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 92405315 92407632 92405315 ID=MS.gene68182
chr3.1 mRNA 92405315 92407632 92405315 ID=MS.gene68182.t1;Parent=MS.gene68182
chr3.1 exon 92405315 92405355 92405315 ID=MS.gene68182.t1.exon1;Parent=MS.gene68182.t1
chr3.1 CDS 92405315 92405355 92405315 ID=cds.MS.gene68182.t1;Parent=MS.gene68182.t1
chr3.1 exon 92405457 92405570 92405457 ID=MS.gene68182.t1.exon2;Parent=MS.gene68182.t1
chr3.1 CDS 92405457 92405570 92405457 ID=cds.MS.gene68182.t1;Parent=MS.gene68182.t1
chr3.1 exon 92406024 92406116 92406024 ID=MS.gene68182.t1.exon3;Parent=MS.gene68182.t1
chr3.1 CDS 92406024 92406116 92406024 ID=cds.MS.gene68182.t1;Parent=MS.gene68182.t1
chr3.1 exon 92407062 92407632 92407062 ID=MS.gene68182.t1.exon4;Parent=MS.gene68182.t1
chr3.1 CDS 92407062 92407632 92407062 ID=cds.MS.gene68182.t1;Parent=MS.gene68182.t1
Gene Sequence

>MS.gene68182

ATGAATGTTATGAAGAATGTGACATGGAGACTTGCTATCAAGTTTTGGGTCCTGAGAACGGTGACATGATTGATGCGAGATGGGTTGCATGTTGAAATTTCATGTTCTATACTGTTGGAATTTTGGTTTTTATATTTTGAAGGGGAGGCGGGGGTTTGGATTGGTTTAAGGATGATCTTGGATGTGGTTGTGATGTGGACAGGAGGAGGCAGTGGCTGATTGTGTATGTTGTGGTGGAGGTGGTTGCTGATCAGTGGTGAAAGAAGTTAAGAAAAATTTGAAAATGAGTTCAGACAGCCGCAGCCGGAGCCGAAGCAGGAGCAGGAGCAGAAGTCGTAGCCCAGGAATCCGTAAGATTCGCTCTGATCGACATTCCTATCGCGATGCTCCTTACAGGAGAGATTCAAGTCGGGGTTTCAGGTTTTTTTTTTCGAACTATTTATTTGCCATTCTCTTTACCTACTCAAATGTACTGGTTAGGAATTAGGATGGCTGGAGAAGAATGAAACAGTGCTGTGCTAGAAGAGGCTTTAAATGTTCATAGTGCTGTTTGTAAATCCTTTAGCCCATTCATTTACTCTTTTTATGATATGATATCTTCATACTCTGCCTGCTGCTCTGATAAGTTCTTTTTATCGAGCCATTTGACATTTTGAATATGTGTGCATTTCTCACAGCGGTAACCATAATTTGTTTTTTTTTTTGTCAGCCGAGACAATTTGTGCAAGAACTGTAAGAGGCCTGGTCATTATGCTAGAGAATGCCCTAATGTTGCGGTTTGCCACAATTGTGGTCTTCCAGGGTATGGAATTCCGTCTCTGTTTTTTTAACTGAGAATGTTATTCTCTGATGTTTTGCTTGCTTAAGTAAATTATTTATCGCGGCGAGGGATGCAAGTTGGTCTTTGTGCCAACTCTTTAATTTGGTCCTTGCATAATTAAAGTTGATATTGGAAGTTTTTAACAGATTCATCGTGGCCATTCCCTTGTGAACTTTACCTACATTTTCTTTCATAGATTTTCCTAGATAGATTTTCTTAGATTTTGGTACCAGTCAGCATGGACATACCTTACATTTCTTCTGAAGAATTTTTCTCTTGACGAACCTTGCTTGCATGTCCATGATGTCACCTTAGGATGTACTTCCAATTCATTTGTGTTATCTTGTACCGTTGGTGCTTAGGTTTCTTGCTTCTTAATTGGACGGTGGTTGATTTTAGGAATTCACATATTATATTCACCTTTTGCTCATTTTTTTTTTTTTTTCCGTTCTCAAATAATATGGTTTTGCTTTTGTTCCTAGATTATGGTTTTATTTTCATTTGATGTCGTTGTTGAATAATTGCTTTATAAACATGTCATTGAAGGTTGCAGACCTTCAAGAGACATCAGATGAGTTGTCCGAAAAGATTGGAAAAAAACAAATCACATGATTTGCCTTGTTTCACTTCAATAAATAATTGCACCTTTACAATCTTCATTTGATTTTATGGACGAGAAGGCCGTTTTCCTATTGATTCTGATGGCAAATATTGATTCCTCGTTTGACTAAAATGTAACAGAAACTGCTTTAAGTGACAGATTTAGTCATGTCTAAGCCTCTTTATGTTGTCATTTTCTCTTATATGATCATTTTCAGCTATGTCAAATTGTTAACTATCTAATATTTGCTGACAAGTGTCGTGGCTCGATTTGCTAGTTTTTGTGATTGTTTTTTTTTTTTTTTTTTTCCTTTTATGTTTAATCAGGCACATTGCTTCTGAATGCTCCACGAAATCCGTGTGCTGGAATTGCAAAGAATCTGGCCACATGGCCAGCAATTGTCCAAATGAGGGCATTTGCCACACCTGTGGTAAAACTGGCCACCGTGCTAGGGAGTGCTCAGCTCCATCACTGCCTCCAGGGGACCTAAGGTTGTGCCATAATTGCTATAAGCAGGGCCACATTGCTGTTGAATGTACCAACGAGAAGGCTTGCAATAATTGTAGGAAAACAGGGCACTTGGCACGTGATTGTCCAAATGACCCAATTTGCAATGTGTGCAATGTTTCTGGACACTTGGCTAGACAATGTCCAAAATCCGACGTTATTGGAGACCACAGAGGCAGAGGCAGCTTCCGTGGTGCTGGTGGTGGTGGTGTTGCTGCTGGTGGTGGTTACCGTGATGTCGTGTGCAGGAACTGCCAGCAATTTGGTCACATGAGTCGGGACTGCATGGGGCCCTTGATGATTTGTCATAATTGTGGAGGTCGTGGTCACTTGGCATATGAGTGCCCTTCAGGTCGTTTTGTGGATCGCTACCCTAGTAGGAGGTACTAA

Protein sequence

>MS.gene68182.t1

MNVMKNVTWRLAIKGGGGLDWFKDDLGCGCDVDRRRQWLIVYVVVEVVADQCRDNLCKNCKRPGHYARECPNVAVCHNCGLPGHIASECSTKSVCWNCKESGHMASNCPNEGICHTCGKTGHRARECSAPSLPPGDLRLCHNCYKQGHIAVECTNEKACNNCRKTGHLARDCPNDPICNVCNVSGHLARQCPKSDVIGDHRGRGSFRGAGGGGVAAGGGYRDVVCRNCQQFGHMSRDCMGPLMICHNCGGRGHLAYECPSGRFVDRYPSRRY