Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69325.t1 | XP_013462277.1 | 99.8 | 492 | 1 | 0 | 1 | 492 | 1 | 492 | 1.90E-303 | 1050.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69325.t1 | P25890 | 92.1 | 494 | 37 | 1 | 1 | 492 | 1 | 494 | 4.9e-287 | 987.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69325.t1 | A0A072V3A8 | 99.8 | 492 | 1 | 0 | 1 | 492 | 1 | 492 | 1.4e-303 | 1050.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049232 | MS.gene69325 | 0.808872 | 2.50E-50 | -1.69E-46 |
| MS.gene050170 | MS.gene69325 | 0.840904 | 6.56E-58 | -1.69E-46 |
| MS.gene050323 | MS.gene69325 | 0.809234 | 2.09E-50 | -1.69E-46 |
| MS.gene050496 | MS.gene69325 | 0.826364 | 2.82E-54 | -1.69E-46 |
| MS.gene050518 | MS.gene69325 | 0.818338 | 2.06E-52 | -1.69E-46 |
| MS.gene050577 | MS.gene69325 | 0.827774 | 1.30E-54 | -1.69E-46 |
| MS.gene050876 | MS.gene69325 | 0.841381 | 4.92E-58 | -1.69E-46 |
| MS.gene050904 | MS.gene69325 | 0.870229 | 1.71E-66 | -1.69E-46 |
| MS.gene050986 | MS.gene69325 | 0.809093 | 2.24E-50 | -1.69E-46 |
| MS.gene051317 | MS.gene69325 | 0.827697 | 1.36E-54 | -1.69E-46 |
| MS.gene052482 | MS.gene69325 | 0.806275 | 8.90E-50 | -1.69E-46 |
| MS.gene052486 | MS.gene69325 | 0.813294 | 2.75E-51 | -1.69E-46 |
| MS.gene054638 | MS.gene69325 | 0.839701 | 1.35E-57 | -1.69E-46 |
| MS.gene05470 | MS.gene69325 | 0.814366 | 1.60E-51 | -1.69E-46 |
| MS.gene054954 | MS.gene69325 | 0.807544 | 4.80E-50 | -1.69E-46 |
| MS.gene055748 | MS.gene69325 | 0.814376 | 1.59E-51 | -1.69E-46 |
| MS.gene055750 | MS.gene69325 | 0.812029 | 5.21E-51 | -1.69E-46 |
| MS.gene055751 | MS.gene69325 | 0.825747 | 3.96E-54 | -1.69E-46 |
| MS.gene055765 | MS.gene69325 | -0.812352 | 4.43E-51 | -1.69E-46 |
| MS.gene055776 | MS.gene69325 | 0.815931 | 7.18E-52 | -1.69E-46 |
| MS.gene055849 | MS.gene69325 | 0.837635 | 4.63E-57 | -1.69E-46 |
| MS.gene05589 | MS.gene69325 | 0.829103 | 6.21E-55 | -1.69E-46 |
| MS.gene056266 | MS.gene69325 | 0.817981 | 2.49E-52 | -1.69E-46 |
| MS.gene056450 | MS.gene69325 | 0.841232 | 5.38E-58 | -1.69E-46 |
| MS.gene056504 | MS.gene69325 | 0.824165 | 9.36E-54 | -1.69E-46 |
| MS.gene056510 | MS.gene69325 | 0.807434 | 5.06E-50 | -1.69E-46 |
| MS.gene056692 | MS.gene69325 | 0.808325 | 3.27E-50 | -1.69E-46 |
| MS.gene057684 | MS.gene69325 | 0.847593 | 1.05E-59 | -1.69E-46 |
| MS.gene057687 | MS.gene69325 | 0.80812 | 3.62E-50 | -1.69E-46 |
| MS.gene057831 | MS.gene69325 | 0.804448 | 2.15E-49 | -1.69E-46 |
| MS.gene057872 | MS.gene69325 | 0.883837 | 3.20E-71 | -1.69E-46 |
| MS.gene058719 | MS.gene69325 | 0.8201 | 8.20E-53 | -1.69E-46 |
| MS.gene059837 | MS.gene69325 | 0.883543 | 4.10E-71 | -1.69E-46 |
| MS.gene059865 | MS.gene69325 | 0.808308 | 3.30E-50 | -1.69E-46 |
| MS.gene06000 | MS.gene69325 | 0.816219 | 6.19E-52 | -1.69E-46 |
| MS.gene060762 | MS.gene69325 | 0.8029 | 4.50E-49 | -1.69E-46 |
| MS.gene06077 | MS.gene69325 | 0.823355 | 1.45E-53 | -1.69E-46 |
| MS.gene060982 | MS.gene69325 | 0.844676 | 6.52E-59 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69325.t1 | MTR_3g115370 | 99.797 | 492 | 1 | 0 | 1 | 492 | 1 | 492 | 0.0 | 1028 |
| MS.gene69325.t1 | MTR_3g115370 | 98.135 | 429 | 8 | 0 | 1 | 429 | 1 | 429 | 0.0 | 878 |
| MS.gene69325.t1 | MTR_1386s0010 | 45.303 | 479 | 250 | 6 | 9 | 483 | 21 | 491 | 2.02e-139 | 411 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69325.t1 | AT4G35090 | 87.398 | 492 | 62 | 0 | 1 | 492 | 1 | 492 | 0.0 | 920 |
| MS.gene69325.t1 | AT4G35090 | 87.090 | 488 | 63 | 0 | 5 | 492 | 5 | 492 | 0.0 | 910 |
| MS.gene69325.t1 | AT1G20630 | 85.569 | 492 | 71 | 0 | 1 | 492 | 1 | 492 | 0.0 | 895 |
| MS.gene69325.t1 | AT4G35090 | 87.553 | 474 | 59 | 0 | 1 | 474 | 1 | 474 | 0.0 | 889 |
| MS.gene69325.t1 | AT1G20620 | 78.455 | 492 | 106 | 0 | 1 | 492 | 1 | 492 | 0.0 | 843 |
| MS.gene69325.t1 | AT1G20620 | 78.234 | 487 | 106 | 0 | 6 | 492 | 65 | 551 | 0.0 | 833 |
| MS.gene69325.t1 | AT1G20620 | 77.033 | 492 | 106 | 1 | 1 | 492 | 1 | 485 | 0.0 | 822 |
| MS.gene69325.t1 | AT1G20620 | 78.282 | 419 | 91 | 0 | 1 | 419 | 1 | 419 | 0.0 | 715 |
| MS.gene69325.t1 | AT1G20620 | 76.393 | 377 | 89 | 0 | 116 | 492 | 1 | 377 | 0.0 | 637 |
| MS.gene69325.t1 | AT1G20620 | 77.818 | 275 | 61 | 0 | 116 | 390 | 1 | 275 | 7.07e-167 | 473 |
Find 169 sgRNAs with CRISPR-Local
Find 280 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGAGGGTCTCTCAAGGTTTC+AGG | 0.120854 | 3.3:-94101134 | None:intergenic |
| AACATGAGGCCTAGCATTTA+AGG | 0.173184 | 3.3:+94103606 | MS.gene69325:CDS |
| GCGCTTACAATTCTCCTTTC+TGG | 0.174679 | 3.3:+94099807 | MS.gene69325:CDS |
| GAGAACATGTGAAGACTTTC+TGG | 0.177485 | 3.3:-94101882 | None:intergenic |
| GGATCCGTTCCCTATCAAAT+TGG | 0.267128 | 3.3:-94100953 | None:intergenic |
| GTTGGATCCTCCCACCTTAA+TGG | 0.271983 | 3.3:-94102063 | None:intergenic |
| CTTTCCCAGCCTTGTTGATC+AGG | 0.273529 | 3.3:-94101977 | None:intergenic |
| TATAGGCACATGGATGGTTT+TGG | 0.286155 | 3.3:+94101939 | MS.gene69325:CDS |
| ATTCTCCTGGATGTGGGACT+TGG | 0.295541 | 3.3:-94101829 | None:intergenic |
| CTGGCATGGACAACACGTTC+TGG | 0.317458 | 3.3:-94100975 | None:intergenic |
| TGGATGTGGGACTTGGGGTT+GGG | 0.323157 | 3.3:-94101822 | None:intergenic |
| TTAAGAGCATGGACCATATC+TGG | 0.327136 | 3.3:-94101798 | None:intergenic |
| TTCTCCTGGATGTGGGACTT+GGG | 0.330541 | 3.3:-94101828 | None:intergenic |
| CTGGATGTGGGACTTGGGGT+TGG | 0.333029 | 3.3:-94101823 | None:intergenic |
| TGCTTGAAGTTGTTCTGCTT+TGG | 0.342575 | 3.3:-94103219 | None:intergenic |
| CTCCTTCCTGTTTGATGATG+TGG | 0.344839 | 3.3:+94101902 | MS.gene69325:CDS |
| GCGGGAAGTTGCAGATAGTT+TGG | 0.347365 | 3.3:-94102416 | None:intergenic |
| CAGGGTAACTTTGACCTTGT+TGG | 0.356144 | 3.3:+94101732 | MS.gene69325:intron |
| CCTTTCTGGACTACAAATTC+CGG | 0.359209 | 3.3:+94099821 | MS.gene69325:CDS |
| TTCATTAATTTCTACCTCTC+TGG | 0.360898 | 3.3:-94101180 | None:intergenic |
| CCCATGAAATCCGCAGCATC+TGG | 0.368012 | 3.3:+94103418 | MS.gene69325:CDS |
| CAAATTCCGGTGCACCTGTT+TGG | 0.371503 | 3.3:+94099834 | MS.gene69325:CDS |
| ACCCTTTGCACTTGCTCCCC+TGG | 0.372101 | 3.3:-94100994 | None:intergenic |
| CTGGAGAGCGATACCGATCT+TGG | 0.372596 | 3.3:+94103244 | MS.gene69325:CDS |
| AAAAGCTTGCCCAATTTGAT+AGG | 0.374612 | 3.3:+94100943 | MS.gene69325:CDS |
| AGTCCCACATCCAGGAGAAT+TGG | 0.375895 | 3.3:+94101832 | MS.gene69325:CDS |
| CTGTCTTCTTCGTTCATGAC+GGG | 0.379692 | 3.3:+94101766 | MS.gene69325:CDS |
| TGATAATCTTCCAAGAGAAT+TGG | 0.382249 | 3.3:-94100912 | None:intergenic |
| TTTGGCAGGTCCAATTCTCT+TGG | 0.391620 | 3.3:+94100902 | MS.gene69325:intron |
| TCCAGATGCTGCGGATTTCA+TGG | 0.392167 | 3.3:-94103419 | None:intergenic |
| GTTGGAGGAAGAGGCCATTA+AGG | 0.394703 | 3.3:+94102049 | MS.gene69325:CDS |
| TCAAATTTGTCTTCGTGAGC+AGG | 0.405045 | 3.3:-94102170 | None:intergenic |
| TTGCACTTGCTCCCCTGGCA+TGG | 0.415695 | 3.3:-94100989 | None:intergenic |
| TCCTTCCTGTTTGATGATGT+GGG | 0.418017 | 3.3:+94101903 | MS.gene69325:CDS |
| GATGAGTTGTTGTTCCAAAC+AGG | 0.420786 | 3.3:-94099848 | None:intergenic |
| TGGGTGTCCCACAAGATTAT+AGG | 0.422410 | 3.3:+94101922 | MS.gene69325:CDS |
| CCTTCAGCCCGTAGGTCGCC+TGG | 0.422999 | 3.3:+94102241 | MS.gene69325:CDS |
| TGTCCTGCCATTATTGTGCC+TGG | 0.427513 | 3.3:+94102317 | MS.gene69325:CDS |
| GTATTGTTGTATACCTTGTA+TGG | 0.430027 | 3.3:-94099610 | None:intergenic |
| CCTGTCTTCTTCGTTCATGA+CGG | 0.433221 | 3.3:+94101765 | MS.gene69325:CDS |
| ATTGTTGTGGTGAGCACACT+TGG | 0.434174 | 3.3:-94102447 | None:intergenic |
| GCAGATTTCCTACGAGCTCC+TGG | 0.438797 | 3.3:+94101056 | MS.gene69325:CDS |
| AGGTCAATTACTTCCCTTCA+AGG | 0.445115 | 3.3:+94102662 | MS.gene69325:intron |
| CTTGGAAGATTATCATCTTG+TGG | 0.451741 | 3.3:+94100920 | MS.gene69325:CDS |
| ACCTCTAGATCCAACGGTTA+GGG | 0.454007 | 3.3:-94099870 | None:intergenic |
| ATATACACCAGGCACAATAA+TGG | 0.457625 | 3.3:-94102324 | None:intergenic |
| ATGCAGGCTGATCGTTCTCT+TGG | 0.464966 | 3.3:+94103561 | MS.gene69325:intron |
| TTCTCCAATTCTCCTGGATG+TGG | 0.467363 | 3.3:-94101836 | None:intergenic |
| CAAGGATTCTCCAATTCTCC+TGG | 0.469085 | 3.3:-94101842 | None:intergenic |
| CCATGTGCCTATAATCTTGT+GGG | 0.470182 | 3.3:-94101929 | None:intergenic |
| GAGGGTCTCTCAAGGTTTCA+GGG | 0.471242 | 3.3:-94101133 | None:intergenic |
| TTTCTCTGCATGCCGTGAAA+AGG | 0.473118 | 3.3:+94102732 | MS.gene69325:CDS |
| TACCTCTAGATCCAACGGTT+AGG | 0.473805 | 3.3:-94099871 | None:intergenic |
| AAGATAGATTTCTCCGCAGA+TGG | 0.473911 | 3.3:+94103367 | MS.gene69325:CDS |
| CAAGATCGGTATCGCTCTCC+AGG | 0.473917 | 3.3:-94103243 | None:intergenic |
| CTGGATCTCATACTGGTCTC+AGG | 0.475961 | 3.3:+94103437 | MS.gene69325:CDS |
| GTTTCATGAATTTCATTCAC+AGG | 0.477320 | 3.3:+94102480 | MS.gene69325:CDS |
| TGGCATGGACAACACGTTCT+GGG | 0.477969 | 3.3:-94100974 | None:intergenic |
| CAGAACGTGTTGTCCATGCC+AGG | 0.477991 | 3.3:+94100976 | MS.gene69325:CDS |
| TCCTGTTCGTCATGCAGAAA+AGG | 0.478892 | 3.3:+94102690 | MS.gene69325:CDS |
| CGAACAGGATCATGCCTTGA+AGG | 0.481337 | 3.3:-94102676 | None:intergenic |
| CTATGTTCTTGTTCAAGACC+AGG | 0.484090 | 3.3:-94102259 | None:intergenic |
| CAGAACAACTTCAAGCAGCC+TGG | 0.486042 | 3.3:+94103225 | MS.gene69325:CDS |
| GATCCGTTCCCTATCAAATT+GGG | 0.489050 | 3.3:-94100952 | None:intergenic |
| TCTCCTGGATGTGGGACTTG+GGG | 0.492998 | 3.3:-94101827 | None:intergenic |
| TTTCCCAGCCTTGTTGATCA+GGG | 0.494239 | 3.3:-94101976 | None:intergenic |
| GAAAGGAGAATTGTAAGCGC+TGG | 0.495605 | 3.3:-94099804 | None:intergenic |
| GTAGGAAATCTGCACAAGTC+AGG | 0.497677 | 3.3:-94101046 | None:intergenic |
| GAGAAATTAGCAGTAGGAAT+GGG | 0.501006 | 3.3:-94102715 | None:intergenic |
| CAGGCGACCTACGGGCTGAA+GGG | 0.503163 | 3.3:-94102240 | None:intergenic |
| GTTCAAGACCAGGCGACCTA+CGG | 0.504173 | 3.3:-94102249 | None:intergenic |
| TGGGGTTGGGTTTAAGAGCA+TGG | 0.506473 | 3.3:-94101809 | None:intergenic |
| CAGCAGCAATTGAATCATAC+AGG | 0.508681 | 3.3:-94102106 | None:intergenic |
| TCGCAACAACCTTAAATGCT+AGG | 0.510006 | 3.3:-94103615 | None:intergenic |
| GGACACCCACATCATCAAAC+AGG | 0.511274 | 3.3:-94101908 | None:intergenic |
| ACCGATCTTGGGCACCCGAC+AGG | 0.511670 | 3.3:+94103256 | MS.gene69325:CDS |
| CAGTGTACGTGAAATTTCAC+TGG | 0.512177 | 3.3:+94102000 | MS.gene69325:CDS |
| ACCTGTCGGGTGCCCAAGAT+CGG | 0.512897 | 3.3:-94103257 | None:intergenic |
| GCAGCATCTGGATCTCATAC+TGG | 0.513786 | 3.3:+94103430 | MS.gene69325:CDS |
| ATGACAGGTGTCTGAACTCC+AGG | 0.514052 | 3.3:-94101074 | None:intergenic |
| GTATACCTTGTATGGATCCA+TGG | 0.516916 | 3.3:-94099602 | None:intergenic |
| TATTCCCTGATCAACAAGGC+TGG | 0.522948 | 3.3:+94101972 | MS.gene69325:CDS |
| TTCAAGACCAGGCGACCTAC+GGG | 0.524652 | 3.3:-94102248 | None:intergenic |
| CAAGTCTTAGTTACATCAAG+TGG | 0.525209 | 3.3:-94102200 | None:intergenic |
| TTGAGTAGCATGGCTGTGGT+TGG | 0.529136 | 3.3:-94102081 | None:intergenic |
| GATTCACAGAGGCACAGACT+TGG | 0.529651 | 3.3:+94102392 | MS.gene69325:CDS |
| TGGAGAGCGATACCGATCTT+GGG | 0.535088 | 3.3:+94103245 | MS.gene69325:CDS |
| CGGATTTCATGGGTGACGCG+TGG | 0.535385 | 3.3:-94103408 | None:intergenic |
| CAACCCCAAGTCCCACATCC+AGG | 0.536425 | 3.3:+94101824 | MS.gene69325:CDS |
| AGAGAAATTAGCAGTAGGAA+TGG | 0.536458 | 3.3:-94102716 | None:intergenic |
| CCAGGCGACCTACGGGCTGA+AGG | 0.540862 | 3.3:-94102241 | None:intergenic |
| GTAGAGAAACGCACAATGAC+AGG | 0.540987 | 3.3:-94101089 | None:intergenic |
| TCCATGTGCCTATAATCTTG+TGG | 0.541036 | 3.3:-94101930 | None:intergenic |
| CACTTGATGTAACTAAGACT+TGG | 0.542839 | 3.3:+94102201 | MS.gene69325:CDS |
| GCACACTTGGGAGCATTAGC+GGG | 0.543955 | 3.3:-94102434 | None:intergenic |
| AGCACACTTGGGAGCATTAG+CGG | 0.545062 | 3.3:-94102435 | None:intergenic |
| CTGTATGATTCAATTGCTGC+TGG | 0.545137 | 3.3:+94102107 | MS.gene69325:CDS |
| TGAAGGGGTATAATGTCCTC+AGG | 0.545718 | 3.3:-94102224 | None:intergenic |
| GCCAGGGGAGCAAGTGCAAA+GGG | 0.546598 | 3.3:+94100993 | MS.gene69325:CDS |
| AAAGCTTGCCCAATTTGATA+GGG | 0.548471 | 3.3:+94100944 | MS.gene69325:CDS |
| TCTCCAATTCTCCTGGATGT+GGG | 0.550324 | 3.3:-94101835 | None:intergenic |
| TGCCAGGGGAGCAAGTGCAA+AGG | 0.551070 | 3.3:+94100992 | MS.gene69325:CDS |
| CCAGATGCTGCGGATTTCAT+GGG | 0.552199 | 3.3:-94103418 | None:intergenic |
| GAAGTGTCTGTTGGAGGAAG+AGG | 0.554768 | 3.3:+94102040 | MS.gene69325:CDS |
| CCGTCATGAACGAAGAAGAC+AGG | 0.555643 | 3.3:-94101765 | None:intergenic |
| TTTCATTCACAGGGATGAAG+AGG | 0.555667 | 3.3:+94102490 | MS.gene69325:CDS |
| TCCCTAACCGTTGGATCTAG+AGG | 0.556180 | 3.3:+94099869 | MS.gene69325:CDS |
| TTGCCCAATTTGATAGGGAA+CGG | 0.556792 | 3.3:+94100949 | MS.gene69325:CDS |
| GTTGTTCCAAACAGGTGCAC+CGG | 0.562996 | 3.3:-94099840 | None:intergenic |
| AGGCGACCTACGGGCTGAAG+GGG | 0.563132 | 3.3:-94102239 | None:intergenic |
| AACAACTCATCCCTAACCGT+TGG | 0.569919 | 3.3:+94099860 | MS.gene69325:CDS |
| GGAGAATTGTAAGCGCTGGA+TGG | 0.570856 | 3.3:-94099800 | None:intergenic |
| AATTGTAAGCGCTGGATGGA+CGG | 0.572978 | 3.3:-94099796 | None:intergenic |
| ATTCACAGAGGCACAGACTT+GGG | 0.574309 | 3.3:+94102393 | MS.gene69325:CDS |
| ATTCCCTGATCAACAAGGCT+GGG | 0.574864 | 3.3:+94101973 | MS.gene69325:CDS |
| GAAAGTGAGAAAAGAAGTCA+AGG | 0.576589 | 3.3:-94101860 | None:intergenic |
| CCGGAATTTGTAGTCCAGAA+AGG | 0.579292 | 3.3:-94099821 | None:intergenic |
| GGATTTCATGGGTGACGCGT+GGG | 0.579795 | 3.3:-94103407 | None:intergenic |
| ATGTGGTGTGAAGTGTCTGT+TGG | 0.580105 | 3.3:+94102031 | MS.gene69325:CDS |
| GAACAGGATCATGCCTTGAA+GGG | 0.580459 | 3.3:-94102675 | None:intergenic |
| GGAGGAAGAGGCCATTAAGG+TGG | 0.581156 | 3.3:+94102052 | MS.gene69325:CDS |
| ACCAACCATGGATCCATACA+AGG | 0.581655 | 3.3:+94099597 | None:intergenic |
| TTCATGGGTGACGCGTGGGT+CGG | 0.582291 | 3.3:-94103403 | None:intergenic |
| TGAACAAACAGTTTCCACTC+AGG | 0.583241 | 3.3:-94102137 | None:intergenic |
| AGATAGATTTCTCCGCAGAT+GGG | 0.587386 | 3.3:+94103368 | MS.gene69325:CDS |
| CAGACACTTCACACCACATG+TGG | 0.589761 | 3.3:-94102027 | None:intergenic |
| CAAGATTATAGGCACATGGA+TGG | 0.589982 | 3.3:+94101933 | MS.gene69325:CDS |
| TAGATTTCTCCGCAGATGGG+TGG | 0.591794 | 3.3:+94103371 | MS.gene69325:CDS |
| GAGGAAGAGGCCATTAAGGT+GGG | 0.593020 | 3.3:+94102053 | MS.gene69325:CDS |
| TTGCATCTCATCTGAACATG+AGG | 0.594906 | 3.3:+94103592 | MS.gene69325:CDS |
| CAGGAAAGTTGTTTCCAACA+AGG | 0.596437 | 3.3:-94101746 | None:intergenic |
| GGTCTTGAGTAGCATGGCTG+TGG | 0.596746 | 3.3:-94102085 | None:intergenic |
| CCCACAAGATTATAGGCACA+TGG | 0.598312 | 3.3:+94101929 | MS.gene69325:CDS |
| TGGTGTGAAGTGTCTGTTGG+AGG | 0.598470 | 3.3:+94102034 | MS.gene69325:CDS |
| AGAACGTGTTGTCCATGCCA+GGG | 0.598996 | 3.3:+94100977 | MS.gene69325:CDS |
| TTTCATGAATTTCATTCACA+GGG | 0.601023 | 3.3:+94102481 | MS.gene69325:CDS |
| GAACGTGTTGTCCATGCCAG+GGG | 0.604058 | 3.3:+94100978 | MS.gene69325:CDS |
| ACACCAGGCACAATAATGGC+AGG | 0.606260 | 3.3:-94102320 | None:intergenic |
| AAAACCTCGAGGGTCTCTCA+AGG | 0.607779 | 3.3:-94101141 | None:intergenic |
| ATGATAAGATGCTTCAAACC+AGG | 0.609656 | 3.3:+94102354 | MS.gene69325:CDS |
| CACATATTCCCTGATCAACA+AGG | 0.618103 | 3.3:+94101968 | MS.gene69325:CDS |
| ATCAGCATAAGAGAAAATCC+TGG | 0.623303 | 3.3:-94102372 | None:intergenic |
| ATTATACCCCTTCAGCCCGT+AGG | 0.626812 | 3.3:+94102233 | MS.gene69325:CDS |
| ATTTCACAGCAAAACCTCGA+GGG | 0.627533 | 3.3:-94101151 | None:intergenic |
| AGATATACCTCTAGATCCAA+CGG | 0.631010 | 3.3:-94099876 | None:intergenic |
| TTGTTGTGGTGAGCACACTT+GGG | 0.632968 | 3.3:-94102446 | None:intergenic |
| CATGCAGAGAAATTAGCAGT+AGG | 0.633318 | 3.3:-94102721 | None:intergenic |
| TGAAATTCATGAAACCCTCA+TGG | 0.640371 | 3.3:-94102472 | None:intergenic |
| TCTGAACTCCAGGAGCTCGT+AGG | 0.643310 | 3.3:-94101064 | None:intergenic |
| TGTGCCTGGTGTATATTACT+CGG | 0.653190 | 3.3:+94102331 | MS.gene69325:CDS |
| CATACAGGTCTTGAGTAGCA+TGG | 0.654493 | 3.3:-94102091 | None:intergenic |
| TTTCACTGGAAGCCCACATG+TGG | 0.658894 | 3.3:+94102014 | MS.gene69325:CDS |
| AAGTCTTAGTTACATCAAGT+GGG | 0.661737 | 3.3:-94102199 | None:intergenic |
| AACCCTCATGGTGATTGTTG+TGG | 0.663659 | 3.3:-94102460 | None:intergenic |
| CACCACAACAATCACCATGA+GGG | 0.667620 | 3.3:+94102458 | MS.gene69325:CDS |
| TCTACTGTCATTCATGAACG+TGG | 0.669221 | 3.3:+94101107 | MS.gene69325:CDS |
| ACCCACATCATCAAACAGGA+AGG | 0.673105 | 3.3:-94101904 | None:intergenic |
| ATAAAGCATCCACCCATCTG+CGG | 0.685814 | 3.3:-94103380 | None:intergenic |
| AGTATGAGATCCAGATGCTG+CGG | 0.691680 | 3.3:-94103428 | None:intergenic |
| AATTTCACAGCAAAACCTCG+AGG | 0.694899 | 3.3:-94101152 | None:intergenic |
| CTGCTGGTAACTATCCTGAG+TGG | 0.697296 | 3.3:+94102123 | MS.gene69325:CDS |
| AGACACTTCACACCACATGT+GGG | 0.702081 | 3.3:-94102026 | None:intergenic |
| TCATCCGAGTAATATACACC+AGG | 0.707390 | 3.3:-94102335 | None:intergenic |
| GAAGAGGCCATTAAGGTGGG+AGG | 0.707656 | 3.3:+94102056 | MS.gene69325:CDS |
| TCTCTTATGCTGATTCACAG+AGG | 0.708120 | 3.3:+94102381 | MS.gene69325:CDS |
| TCACCACAACAATCACCATG+AGG | 0.719886 | 3.3:+94102457 | MS.gene69325:CDS |
| TGTAACTAAGACTTGGCCTG+AGG | 0.723437 | 3.3:+94102208 | MS.gene69325:CDS |
| GAAACCTTGAGAGACCCTCG+AGG | 0.734649 | 3.3:+94101137 | MS.gene69325:CDS |
| TGTGAAATTCTACACCAGAG+AGG | 0.748378 | 3.3:+94101166 | MS.gene69325:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAGAATAATTTAAAGATA+TGG | - | chr3.3:94099958-94099977 | None:intergenic | 10.0% |
| !!! | ACAACATTTTTTTTTAAATA+AGG | - | chr3.3:94102853-94102872 | None:intergenic | 10.0% |
| !! | TAGCATTTAATTAAACAATT+TGG | + | chr3.3:94101381-94101400 | MS.gene69325:intron | 15.0% |
| !! | TCAATAAATAAACAAAACTA+CGG | - | chr3.3:94099708-94099727 | None:intergenic | 15.0% |
| !! | TGTTAAATTATATGATTTCA+CGG | + | chr3.3:94100015-94100034 | MS.gene69325:intron | 15.0% |
| !! | TTTAATTAAATGCTACATTT+GGG | - | chr3.3:94101376-94101395 | None:intergenic | 15.0% |
| !!! | AATCTATCAATTTGTTTTTT+TGG | + | chr3.3:94099735-94099754 | MS.gene69325:intron | 15.0% |
| !!! | GTTTTCATAAACTATAATAA+GGG | + | chr3.3:94100369-94100388 | MS.gene69325:intron | 15.0% |
| !!! | TAAGAATATTTCACAAATTT+TGG | - | chr3.3:94102903-94102922 | None:intergenic | 15.0% |
| !!! | TGTTTTCATAAACTATAATA+AGG | + | chr3.3:94100368-94100387 | MS.gene69325:intron | 15.0% |
| !!! | TTTAACATAATTTGATTTCT+TGG | + | chr3.3:94099975-94099994 | MS.gene69325:intron | 15.0% |
| !! | ATAAGTTGTTTATCCAAATA+TGG | - | chr3.3:94100131-94100150 | None:intergenic | 20.0% |
| !! | GTTTAATTAAATGCTACATT+TGG | - | chr3.3:94101377-94101396 | None:intergenic | 20.0% |
| !! | TAATTAAACAATTTGGTCTA+GGG | + | chr3.3:94101388-94101407 | MS.gene69325:intron | 20.0% |
| !! | TTAATTAAACAATTTGGTCT+AGG | + | chr3.3:94101387-94101406 | MS.gene69325:intron | 20.0% |
| !! | TTAATTAAATGCTACATTTG+GGG | - | chr3.3:94101375-94101394 | None:intergenic | 20.0% |
| !! | TTGAAATTTCAAAGTACAAA+GGG | - | chr3.3:94101488-94101507 | None:intergenic | 20.0% |
| !!! | GACAATAATTGTTTTAAAAG+AGG | + | chr3.3:94101650-94101669 | MS.gene69325:intron | 20.0% |
| !!! | TGCAAATTAATTTGAAGTTT+AGG | + | chr3.3:94103031-94103050 | MS.gene69325:intron | 20.0% |
| !!! | TTATATTATTTTACCCCTTT+TGG | + | chr3.3:94100884-94100903 | MS.gene69325:intron | 20.0% |
| !!! | TTTGAAATTTCAAAGTACAA+AGG | - | chr3.3:94101489-94101508 | None:intergenic | 20.0% |
| ! | AAAAATCTATGATCTTTCGT+TGG | + | chr3.3:94102936-94102955 | MS.gene69325:intron | 25.0% |
| ! | AAATATGCGCTTATAGTATA+AGG | + | chr3.3:94100105-94100124 | MS.gene69325:intron | 25.0% |
| ! | ACCAACTTAATATTTAACCA+AGG | - | chr3.3:94103012-94103031 | None:intergenic | 25.0% |
| ! | ACCTTGGTTAAATATTAAGT+TGG | + | chr3.3:94103008-94103027 | MS.gene69325:intron | 25.0% |
| ! | CAGTTATATCAAAAACAGTT+AGG | - | chr3.3:94100507-94100526 | None:intergenic | 25.0% |
| ! | CTGTAATTATATTTAGTCAC+TGG | - | chr3.3:94101552-94101571 | None:intergenic | 25.0% |
| ! | GAAGTAATTGACCTATAAAA+TGG | - | chr3.3:94102656-94102675 | None:intergenic | 25.0% |
| ! | GATATAACTGAAGCTATAAT+GGG | + | chr3.3:94100517-94100536 | MS.gene69325:intron | 25.0% |
| ! | GATTGTGTTGAAACTATTAT+CGG | - | chr3.3:94101321-94101340 | None:intergenic | 25.0% |
| ! | GTTTAAACAATACCTGTATT+GGG | + | chr3.3:94103152-94103171 | MS.gene69325:intron | 25.0% |
| ! | TATAAAATAAATGACGAGTG+AGG | + | chr3.3:94103103-94103122 | MS.gene69325:intron | 25.0% |
| ! | TATTGTTTAAACAGCTTTAC+TGG | - | chr3.3:94103144-94103163 | None:intergenic | 25.0% |
| ! | TGATATAACTGAAGCTATAA+TGG | + | chr3.3:94100516-94100535 | MS.gene69325:intron | 25.0% |
| ! | TGGTATATGATAGAATACTA+TGG | + | chr3.3:94100273-94100292 | MS.gene69325:intron | 25.0% |
| ! | TGTTTAAACAATACCTGTAT+TGG | + | chr3.3:94103151-94103170 | MS.gene69325:intron | 25.0% |
| ! | TTAATATTTAACCAAGGTAG+TGG | - | chr3.3:94103006-94103025 | None:intergenic | 25.0% |
| ! | TTATAGTATAAGGCCATATT+TGG | + | chr3.3:94100115-94100134 | MS.gene69325:intron | 25.0% |
| ! | TTTAAACAATACCTGTATTG+GGG | + | chr3.3:94103153-94103172 | MS.gene69325:intron | 25.0% |
| ! | TTTCATGAATTTCATTCACA+GGG | + | chr3.3:94102481-94102500 | MS.gene69325:CDS | 25.0% |
| !! | TATCACATTTAGAGTTATCA+TGG | - | chr3.3:94102581-94102600 | None:intergenic | 25.0% |
| !! | TCATATCAGTATTTTGTAAC+AGG | - | chr3.3:94103284-94103303 | None:intergenic | 25.0% |
| !!! | TTGTTTTAAAAGAGGTGATA+TGG | + | chr3.3:94101658-94101677 | MS.gene69325:intron | 25.0% |
| AAGTCTTAGTTACATCAAGT+GGG | - | chr3.3:94102202-94102221 | None:intergenic | 30.0% | |
| AAGTTATGATATGTCACAAC+TGG | - | chr3.3:94100618-94100637 | None:intergenic | 30.0% | |
| AGCATATGAGCAAATAAGTA+GGG | - | chr3.3:94103525-94103544 | None:intergenic | 30.0% | |
| ATCTTTACCTTCTAAATCAC+AGG | + | chr3.3:94101713-94101732 | MS.gene69325:intron | 30.0% | |
| ATGTTATTATGAGCAGCTTA+TGG | + | chr3.3:94100578-94100597 | MS.gene69325:intron | 30.0% | |
| GCAATCAATCGTAAAAATCA+CGG | - | chr3.3:94102826-94102845 | None:intergenic | 30.0% | |
| GGCGTGGTTTATATAAAAAT+TGG | - | chr3.3:94100719-94100738 | None:intergenic | 30.0% | |
| GTATTGTTGTATACCTTGTA+TGG | - | chr3.3:94099613-94099632 | None:intergenic | 30.0% | |
| GTTTCATGAATTTCATTCAC+AGG | + | chr3.3:94102480-94102499 | MS.gene69325:CDS | 30.0% | |
| TATCTTGCCTGAAAAGATTA+AGG | - | chr3.3:94103353-94103372 | None:intergenic | 30.0% | |
| TCGTAATTAGTTATCACCAT+TGG | + | chr3.3:94100770-94100789 | MS.gene69325:intron | 30.0% | |
| TCTTTACCTTCTAAATCACA+GGG | + | chr3.3:94101714-94101733 | MS.gene69325:intron | 30.0% | |
| TGATAATCTTCCAAGAGAAT+TGG | - | chr3.3:94100915-94100934 | None:intergenic | 30.0% | |
| TGATCAACATGAATTGTGTT+TGG | + | chr3.3:94103301-94103320 | MS.gene69325:intron | 30.0% | |
| TGGATGTCATAACATTAAAC+TGG | - | chr3.3:94100053-94100072 | None:intergenic | 30.0% | |
| TGTAAAGTTCAGGGTTAATT+TGG | + | chr3.3:94100829-94100848 | MS.gene69325:intron | 30.0% | |
| TTCATTAATTTCTACCTCTC+TGG | - | chr3.3:94101183-94101202 | None:intergenic | 30.0% | |
| ! | AATCGAAACTAACCTTTTCA+CGG | - | chr3.3:94102747-94102766 | None:intergenic | 30.0% |
| ! | GACATGTTATCTGTTTTCAT+AGG | + | chr3.3:94100426-94100445 | MS.gene69325:intron | 30.0% |
| ! | TTCTTTGCCTTAATCTTTTC+AGG | + | chr3.3:94103343-94103362 | MS.gene69325:intron | 30.0% |
| !! | GTTTGGTGATGTCTAATATT+TGG | + | chr3.3:94103318-94103337 | MS.gene69325:intron | 30.0% |
| !! | TCGTACATGTGATACTTTTT+AGG | - | chr3.3:94100456-94100475 | None:intergenic | 30.0% |
| !! | TTGGTTGTTTCTAAAATGTG+TGG | - | chr3.3:94102884-94102903 | None:intergenic | 30.0% |
| !!! | GTGTTGTCTTCAATTTTTTC+AGG | - | chr3.3:94101431-94101450 | None:intergenic | 30.0% |
| AAAAGCTTGCCCAATTTGAT+AGG | + | chr3.3:94100943-94100962 | MS.gene69325:CDS | 35.0% | |
| AAAGCTTGCCCAATTTGATA+GGG | + | chr3.3:94100944-94100963 | MS.gene69325:CDS | 35.0% | |
| AACAATTTGGTCTAGGGATT+TGG | + | chr3.3:94101394-94101413 | MS.gene69325:intron | 35.0% | |
| AAGTTACCCTGTGATTTAGA+AGG | - | chr3.3:94101723-94101742 | None:intergenic | 35.0% | |
| AATAAGCTGAAAACAGCTCA+TGG | + | chr3.3:94100404-94100423 | MS.gene69325:intron | 35.0% | |
| AGAGAAATTAGCAGTAGGAA+TGG | - | chr3.3:94102719-94102738 | None:intergenic | 35.0% | |
| AGATATACCTCTAGATCCAA+CGG | - | chr3.3:94099879-94099898 | None:intergenic | 35.0% | |
| ATATACACCAGGCACAATAA+TGG | - | chr3.3:94102327-94102346 | None:intergenic | 35.0% | |
| ATCAGCATAAGAGAAAATCC+TGG | - | chr3.3:94102375-94102394 | None:intergenic | 35.0% | |
| ATCTGTCTGTTGTAAAGTTC+AGG | + | chr3.3:94100819-94100838 | MS.gene69325:intron | 35.0% | |
| ATGATAAGATGCTTCAAACC+AGG | + | chr3.3:94102354-94102373 | MS.gene69325:CDS | 35.0% | |
| CAAGTCTTAGTTACATCAAG+TGG | - | chr3.3:94102203-94102222 | None:intergenic | 35.0% | |
| CACTTGATGTAACTAAGACT+TGG | + | chr3.3:94102201-94102220 | MS.gene69325:CDS | 35.0% | |
| CGATTTAGAGATCAATGAGT+TGG | + | chr3.3:94100253-94100272 | MS.gene69325:intron | 35.0% | |
| CTTGGAAGATTATCATCTTG+TGG | + | chr3.3:94100920-94100939 | MS.gene69325:CDS | 35.0% | |
| GAAAGTGAGAAAAGAAGTCA+AGG | - | chr3.3:94101863-94101882 | None:intergenic | 35.0% | |
| GAGAAATTAGCAGTAGGAAT+GGG | - | chr3.3:94102718-94102737 | None:intergenic | 35.0% | |
| GAGCATATGAGCAAATAAGT+AGG | - | chr3.3:94103526-94103545 | None:intergenic | 35.0% | |
| GCCACATTTAGTTGAGTATT+GGG | + | chr3.3:94100736-94100755 | MS.gene69325:intron | 35.0% | |
| TATTTAGTCGCTGGAAGATA+TGG | - | chr3.3:94101228-94101247 | None:intergenic | 35.0% | |
| TCTGTCTGTTGTAAAGTTCA+GGG | + | chr3.3:94100820-94100839 | MS.gene69325:intron | 35.0% | |
| TGAAATTCATGAAACCCTCA+TGG | - | chr3.3:94102475-94102494 | None:intergenic | 35.0% | |
| TGAACTTTACAACAGACAGA+TGG | - | chr3.3:94100820-94100839 | None:intergenic | 35.0% | |
| TGACAAAGAAGCAGAGAAAT+AGG | + | chr3.3:94102979-94102998 | MS.gene69325:intron | 35.0% | |
| TTAACCAACTCCAGTTTAGT+TGG | + | chr3.3:94101288-94101307 | MS.gene69325:intron | 35.0% | |
| TTTACCAACTAAACTGGAGT+TGG | - | chr3.3:94101295-94101314 | None:intergenic | 35.0% | |
| TTTGCTCATATGCTCTTTGT+TGG | + | chr3.3:94103531-94103550 | MS.gene69325:intron | 35.0% | |
| ! | ATTTTGTAACAGGAACCTGT+CGG | - | chr3.3:94103274-94103293 | None:intergenic | 35.0% |
| ! | CACCATTGGTAATTACAACT+TGG | + | chr3.3:94100784-94100803 | MS.gene69325:intron | 35.0% |
| ! | CCACATTTAGTTGAGTATTG+GGG | + | chr3.3:94100737-94100756 | MS.gene69325:intron | 35.0% |
| !! | ATTATTTTACCCCTTTTGGC+AGG | + | chr3.3:94100888-94100907 | MS.gene69325:intron | 35.0% |
| !!! | CTTTGTTGGTTTTACTATGC+AGG | + | chr3.3:94103545-94103564 | MS.gene69325:intron | 35.0% |
| AAGAGCCTTAATCACATGCA+TGG | - | chr3.3:94100073-94100092 | None:intergenic | 40.0% | |
| AAGAGGTGATATGGAACAGT+TGG | + | chr3.3:94101667-94101686 | MS.gene69325:intron | 40.0% | |
| AAGATAGATTTCTCCGCAGA+TGG | + | chr3.3:94103367-94103386 | MS.gene69325:CDS | 40.0% | |
| AAGCAAATACACAAGCATCC+TGG | - | chr3.3:94101624-94101643 | None:intergenic | 40.0% | |
| AAGTAGTTGCAGTTGTAACC+AGG | + | chr3.3:94101603-94101622 | MS.gene69325:intron | 40.0% | |
| AATTTCACAGCAAAACCTCG+AGG | - | chr3.3:94101155-94101174 | None:intergenic | 40.0% | |
| ACAAAGGGTTTAGACAATGC+TGG | - | chr3.3:94101473-94101492 | None:intergenic | 40.0% | |
| AGATAGATTTCTCCGCAGAT+GGG | + | chr3.3:94103368-94103387 | MS.gene69325:CDS | 40.0% | |
| AGCAATTGAGAGGGTTTACT+TGG | - | chr3.3:94100669-94100688 | None:intergenic | 40.0% | |
| AGGTCAATTACTTCCCTTCA+AGG | + | chr3.3:94102662-94102681 | MS.gene69325:intron | 40.0% | |
| ATACTCAACTAAATGTGGCG+TGG | - | chr3.3:94100735-94100754 | None:intergenic | 40.0% | |
| ATCGTAAAAATCACGGCTGA+TGG | - | chr3.3:94102819-94102838 | None:intergenic | 40.0% | |
| ATTTCACAGCAAAACCTCGA+GGG | - | chr3.3:94101154-94101173 | None:intergenic | 40.0% | |
| CAAGATTATAGGCACATGGA+TGG | + | chr3.3:94101933-94101952 | MS.gene69325:CDS | 40.0% | |
| CACATATTCCCTGATCAACA+AGG | + | chr3.3:94101968-94101987 | MS.gene69325:CDS | 40.0% | |
| CAGCAGCAATTGAATCATAC+AGG | - | chr3.3:94102109-94102128 | None:intergenic | 40.0% | |
| CAGTGTACGTGAAATTTCAC+TGG | + | chr3.3:94102000-94102019 | MS.gene69325:CDS | 40.0% | |
| CATACATTCTTCCCCAATAC+AGG | - | chr3.3:94103167-94103186 | None:intergenic | 40.0% | |
| CATGCAGAGAAATTAGCAGT+AGG | - | chr3.3:94102724-94102743 | None:intergenic | 40.0% | |
| CCATGTGCCTATAATCTTGT+GGG | - | chr3.3:94101932-94101951 | None:intergenic | 40.0% | |
| CCCCAATACTCAACTAAATG+TGG | - | chr3.3:94100740-94100759 | None:intergenic | 40.0% | |
| CCTTTCTGGACTACAAATTC+CGG | + | chr3.3:94099821-94099840 | MS.gene69325:CDS | 40.0% | |
| CGCCAAGTTGTAATTACCAA+TGG | - | chr3.3:94100789-94100808 | None:intergenic | 40.0% | |
| CGCCACATTTAGTTGAGTAT+TGG | + | chr3.3:94100735-94100754 | MS.gene69325:intron | 40.0% | |
| CTATGTTCTTGTTCAAGACC+AGG | - | chr3.3:94102262-94102281 | None:intergenic | 40.0% | |
| CTGTATGATTCAATTGCTGC+TGG | + | chr3.3:94102107-94102126 | MS.gene69325:CDS | 40.0% | |
| GAAGACAACACATGCATTGT+TGG | + | chr3.3:94101440-94101459 | MS.gene69325:intron | 40.0% | |
| GACATCCATGCATGTGATTA+AGG | + | chr3.3:94100065-94100084 | MS.gene69325:intron | 40.0% | |
| GAGAACATGTGAAGACTTTC+TGG | - | chr3.3:94101885-94101904 | None:intergenic | 40.0% | |
| GATCCGTTCCCTATCAAATT+GGG | - | chr3.3:94100955-94100974 | None:intergenic | 40.0% | |
| TCAAATTTGTCTTCGTGAGC+AGG | - | chr3.3:94102173-94102192 | None:intergenic | 40.0% | |
| TCAACTAAGCCTACACAAAC+AGG | + | chr3.3:94100481-94100500 | MS.gene69325:intron | 40.0% | |
| TCATCCGAGTAATATACACC+AGG | - | chr3.3:94102338-94102357 | None:intergenic | 40.0% | |
| TCCATGTGCCTATAATCTTG+TGG | - | chr3.3:94101933-94101952 | None:intergenic | 40.0% | |
| TCTACTGTCATTCATGAACG+TGG | + | chr3.3:94101107-94101126 | MS.gene69325:CDS | 40.0% | |
| TGAACAAACAGTTTCCACTC+AGG | - | chr3.3:94102140-94102159 | None:intergenic | 40.0% | |
| TGCTTGAAGTTGTTCTGCTT+TGG | - | chr3.3:94103222-94103241 | None:intergenic | 40.0% | |
| TGTGAAATTCTACACCAGAG+AGG | + | chr3.3:94101166-94101185 | MS.gene69325:CDS | 40.0% | |
| TGTGCCTGGTGTATATTACT+CGG | + | chr3.3:94102331-94102350 | MS.gene69325:CDS | 40.0% | |
| TTGCCCAATTTGATAGGGAA+CGG | + | chr3.3:94100949-94100968 | MS.gene69325:CDS | 40.0% | |
| TTTCATTCACAGGGATGAAG+AGG | + | chr3.3:94102490-94102509 | MS.gene69325:CDS | 40.0% | |
| ! | CAGGAAAGTTGTTTCCAACA+AGG | - | chr3.3:94101749-94101768 | None:intergenic | 40.0% |
| ! | CGGCATTTTACCAACTAAAC+TGG | - | chr3.3:94101301-94101320 | None:intergenic | 40.0% |
| ! | CGGGATGAATTTTCCAGATA+TGG | + | chr3.3:94101785-94101804 | MS.gene69325:CDS | 40.0% |
| ! | GATGAGTTGTTGTTCCAAAC+AGG | - | chr3.3:94099851-94099870 | None:intergenic | 40.0% |
| ! | TATAGGCACATGGATGGTTT+TGG | + | chr3.3:94101939-94101958 | MS.gene69325:CDS | 40.0% |
| ! | TTAAGAGCATGGACCATATC+TGG | - | chr3.3:94101801-94101820 | None:intergenic | 40.0% |
| ! | TTTTGTAACAGGAACCTGTC+GGG | - | chr3.3:94103273-94103292 | None:intergenic | 40.0% |
| !! | TCCTTCCTGTTTGATGATGT+GGG | + | chr3.3:94101903-94101922 | MS.gene69325:CDS | 40.0% |
| !! | TCTCTTATGCTGATTCACAG+AGG | + | chr3.3:94102381-94102400 | MS.gene69325:CDS | 40.0% |
| !!! | CTTGAGCTCTGCCATTTTAT+AGG | + | chr3.3:94102642-94102661 | MS.gene69325:intron | 40.0% |
| AACAACTCATCCCTAACCGT+TGG | + | chr3.3:94099860-94099879 | MS.gene69325:CDS | 45.0% | |
| AACCCTCATGGTGATTGTTG+TGG | - | chr3.3:94102463-94102482 | None:intergenic | 45.0% | |
| ACAGTTAGGCCTGTTTGTGT+AGG | - | chr3.3:94100493-94100512 | None:intergenic | 45.0% | |
| ACCCACATCATCAAACAGGA+AGG | - | chr3.3:94101907-94101926 | None:intergenic | 45.0% | |
| ACCTCTAGATCCAACGGTTA+GGG | - | chr3.3:94099873-94099892 | None:intergenic | 45.0% | |
| AGAATTGGACCTGCCAAAAG+GGG | - | chr3.3:94100900-94100919 | None:intergenic | 45.0% | |
| AGACACTTCACACCACATGT+GGG | - | chr3.3:94102029-94102048 | None:intergenic | 45.0% | |
| AGAGAATTGGACCTGCCAAA+AGG | - | chr3.3:94100902-94100921 | None:intergenic | 45.0% | |
| AGTATGAGATCCAGATGCTG+CGG | - | chr3.3:94103431-94103450 | None:intergenic | 45.0% | |
| ATTCCCTGATCAACAAGGCT+GGG | + | chr3.3:94101973-94101992 | MS.gene69325:CDS | 45.0% | |
| ATTGTTGTGGTGAGCACACT+TGG | - | chr3.3:94102450-94102469 | None:intergenic | 45.0% | |
| CAAGGATTCTCCAATTCTCC+TGG | - | chr3.3:94101845-94101864 | None:intergenic | 45.0% | |
| CACACATGCAGCAATTGAGA+GGG | - | chr3.3:94100678-94100697 | None:intergenic | 45.0% | |
| CACCACAACAATCACCATGA+GGG | + | chr3.3:94102458-94102477 | MS.gene69325:CDS | 45.0% | |
| CAGGGTAACTTTGACCTTGT+TGG | + | chr3.3:94101732-94101751 | MS.gene69325:intron | 45.0% | |
| CAGTAGCTGTATTTAGTCGC+TGG | - | chr3.3:94101237-94101256 | None:intergenic | 45.0% | |
| CATACAGGTCTTGAGTAGCA+TGG | - | chr3.3:94102094-94102113 | None:intergenic | 45.0% | |
| CCCACAAGATTATAGGCACA+TGG | + | chr3.3:94101929-94101948 | MS.gene69325:CDS | 45.0% | |
| CCGGAATTTGTAGTCCAGAA+AGG | - | chr3.3:94099824-94099843 | None:intergenic | 45.0% | |
| CCTGTCTTCTTCGTTCATGA+CGG | + | chr3.3:94101765-94101784 | MS.gene69325:CDS | 45.0% | |
| CTGTCTTCTTCGTTCATGAC+GGG | + | chr3.3:94101766-94101785 | MS.gene69325:CDS | 45.0% | |
| CTTATCCCACTATGTGGAGT+CGG | - | chr3.3:94100318-94100337 | None:intergenic | 45.0% | |
| GAAAGGAGAATTGTAAGCGC+TGG | - | chr3.3:94099807-94099826 | None:intergenic | 45.0% | |
| GAACAGGATCATGCCTTGAA+GGG | - | chr3.3:94102678-94102697 | None:intergenic | 45.0% | |
| GAGAAATAGGTCCACTACCT+TGG | + | chr3.3:94102992-94103011 | MS.gene69325:intron | 45.0% | |
| GAGAATTGGACCTGCCAAAA+GGG | - | chr3.3:94100901-94100920 | None:intergenic | 45.0% | |
| GCGCTTACAATTCTCCTTTC+TGG | + | chr3.3:94099807-94099826 | MS.gene69325:CDS | 45.0% | |
| GGATCCGTTCCCTATCAAAT+TGG | - | chr3.3:94100956-94100975 | None:intergenic | 45.0% | |
| GTAGAGAAACGCACAATGAC+AGG | - | chr3.3:94101092-94101111 | None:intergenic | 45.0% | |
| GTAGGAAATCTGCACAAGTC+AGG | - | chr3.3:94101049-94101068 | None:intergenic | 45.0% | |
| TACCTCTAGATCCAACGGTT+AGG | - | chr3.3:94099874-94099893 | None:intergenic | 45.0% | |
| TATTCCCTGATCAACAAGGC+TGG | + | chr3.3:94101972-94101991 | MS.gene69325:CDS | 45.0% | |
| TCACCACAACAATCACCATG+AGG | + | chr3.3:94102457-94102476 | MS.gene69325:CDS | 45.0% | |
| TCCTGTTCGTCATGCAGAAA+AGG | + | chr3.3:94102690-94102709 | MS.gene69325:CDS | 45.0% | |
| TCTCCAATTCTCCTGGATGT+GGG | - | chr3.3:94101838-94101857 | None:intergenic | 45.0% | |
| TGGGTGTCCCACAAGATTAT+AGG | + | chr3.3:94101922-94101941 | MS.gene69325:CDS | 45.0% | |
| TGTAACTAAGACTTGGCCTG+AGG | + | chr3.3:94102208-94102227 | MS.gene69325:CDS | 45.0% | |
| TTCTCCAATTCTCCTGGATG+TGG | - | chr3.3:94101839-94101858 | None:intergenic | 45.0% | |
| TTGTTGTGGTGAGCACACTT+GGG | - | chr3.3:94102449-94102468 | None:intergenic | 45.0% | |
| TTTCTCTGCATGCCGTGAAA+AGG | + | chr3.3:94102732-94102751 | MS.gene69325:CDS | 45.0% | |
| TTTGGCAGGTCCAATTCTCT+TGG | + | chr3.3:94100902-94100921 | MS.gene69325:intron | 45.0% | |
| ! | ACCTTTTCTGCATGACGAAC+AGG | - | chr3.3:94102694-94102713 | None:intergenic | 45.0% |
| ! | ATAAAGCATCCACCCATCTG+CGG | - | chr3.3:94103383-94103402 | None:intergenic | 45.0% |
| ! | ATAGTGGGATAAGGCTTGGT+TGG | + | chr3.3:94100325-94100344 | MS.gene69325:intron | 45.0% |
| ! | ATGTGGTGTGAAGTGTCTGT+TGG | + | chr3.3:94102031-94102050 | MS.gene69325:CDS | 45.0% |
| ! | ATTCACAGAGGCACAGACTT+GGG | + | chr3.3:94102393-94102412 | MS.gene69325:CDS | 45.0% |
| ! | TGAAGGGGTATAATGTCCTC+AGG | - | chr3.3:94102227-94102246 | None:intergenic | 45.0% |
| !! | AATTGTAAGCGCTGGATGGA+CGG | - | chr3.3:94099799-94099818 | None:intergenic | 45.0% |
| !! | CTCCTTCCTGTTTGATGATG+TGG | + | chr3.3:94101902-94101921 | MS.gene69325:CDS | 45.0% |
| !! | TTTCCCAGCCTTGTTGATCA+GGG | - | chr3.3:94101979-94101998 | None:intergenic | 45.0% |
| AAAACCTCGAGGGTCTCTCA+AGG | - | chr3.3:94101144-94101163 | None:intergenic | 50.0% | |
| ACACCAGGCACAATAATGGC+AGG | - | chr3.3:94102323-94102342 | None:intergenic | 50.0% | |
| ACTATGTGGAGTCGGCTACA+TGG | - | chr3.3:94100310-94100329 | None:intergenic | 50.0% | |
| AGAACGTGTTGTCCATGCCA+GGG | + | chr3.3:94100977-94100996 | MS.gene69325:CDS | 50.0% | |
| AGTCCCACATCCAGGAGAAT+TGG | + | chr3.3:94101832-94101851 | MS.gene69325:CDS | 50.0% | |
| ATGACAGGTGTCTGAACTCC+AGG | - | chr3.3:94101077-94101096 | None:intergenic | 50.0% | |
| ATGCAGGCTGATCGTTCTCT+TGG | + | chr3.3:94103561-94103580 | MS.gene69325:intron | 50.0% | |
| ATTATACCCCTTCAGCCCGT+AGG | + | chr3.3:94102233-94102252 | MS.gene69325:CDS | 50.0% | |
| ATTCTCCTGGATGTGGGACT+TGG | - | chr3.3:94101832-94101851 | None:intergenic | 50.0% | |
| CAAATTCCGGTGCACCTGTT+TGG | + | chr3.3:94099834-94099853 | MS.gene69325:CDS | 50.0% | |
| CAGAACAACTTCAAGCAGCC+TGG | + | chr3.3:94103225-94103244 | MS.gene69325:CDS | 50.0% | |
| CAGACACTTCACACCACATG+TGG | - | chr3.3:94102030-94102049 | None:intergenic | 50.0% | |
| CCAGATGCTGCGGATTTCAT+GGG | - | chr3.3:94103421-94103440 | None:intergenic | 50.0% | |
| CCGTCATGAACGAAGAAGAC+AGG | - | chr3.3:94101768-94101787 | None:intergenic | 50.0% | |
| CGAACAGGATCATGCCTTGA+AGG | - | chr3.3:94102679-94102698 | None:intergenic | 50.0% | |
| CTGCTGGTAACTATCCTGAG+TGG | + | chr3.3:94102123-94102142 | MS.gene69325:CDS | 50.0% | |
| GAGGAAGAGGCCATTAAGGT+GGG | + | chr3.3:94102053-94102072 | MS.gene69325:CDS | 50.0% | |
| GAGGGTCTCTCAAGGTTTCA+GGG | - | chr3.3:94101136-94101155 | None:intergenic | 50.0% | |
| GCACACATGCAGCAATTGAG+AGG | - | chr3.3:94100679-94100698 | None:intergenic | 50.0% | |
| GCAGCATCTGGATCTCATAC+TGG | + | chr3.3:94103430-94103449 | MS.gene69325:CDS | 50.0% | |
| GCGGGAAGTTGCAGATAGTT+TGG | - | chr3.3:94102419-94102438 | None:intergenic | 50.0% | |
| GGACACCCACATCATCAAAC+AGG | - | chr3.3:94101911-94101930 | None:intergenic | 50.0% | |
| GTTGGAGGAAGAGGCCATTA+AGG | + | chr3.3:94102049-94102068 | MS.gene69325:CDS | 50.0% | |
| GTTGGATCCTCCCACCTTAA+TGG | - | chr3.3:94102066-94102085 | None:intergenic | 50.0% | |
| GTTGTTCCAAACAGGTGCAC+CGG | - | chr3.3:94099843-94099862 | None:intergenic | 50.0% | |
| TAGATTTCTCCGCAGATGGG+TGG | + | chr3.3:94103371-94103390 | MS.gene69325:CDS | 50.0% | |
| TCCAGATGCTGCGGATTTCA+TGG | - | chr3.3:94103422-94103441 | None:intergenic | 50.0% | |
| TCCCTAACCGTTGGATCTAG+AGG | + | chr3.3:94099869-94099888 | MS.gene69325:CDS | 50.0% | |
| TGGAGAGCGATACCGATCTT+GGG | + | chr3.3:94103245-94103264 | MS.gene69325:CDS | 50.0% | |
| TGGCATGGACAACACGTTCT+GGG | - | chr3.3:94100977-94100996 | None:intergenic | 50.0% | |
| TGGGGTTGGGTTTAAGAGCA+TGG | - | chr3.3:94101812-94101831 | None:intergenic | 50.0% | |
| TGTCCTGCCATTATTGTGCC+TGG | + | chr3.3:94102317-94102336 | MS.gene69325:CDS | 50.0% | |
| TTCTCCTGGATGTGGGACTT+GGG | - | chr3.3:94101831-94101850 | None:intergenic | 50.0% | |
| TTGAGTAGCATGGCTGTGGT+TGG | - | chr3.3:94102084-94102103 | None:intergenic | 50.0% | |
| TTTCACTGGAAGCCCACATG+TGG | + | chr3.3:94102014-94102033 | MS.gene69325:CDS | 50.0% | |
| ! | ATGTAGCCGACTCCACATAG+TGG | + | chr3.3:94100309-94100328 | MS.gene69325:intron | 50.0% |
| ! | CCAAGCCTTATCCCACTATG+TGG | - | chr3.3:94100324-94100343 | None:intergenic | 50.0% |
| ! | CCACATAGTGGGATAAGGCT+TGG | + | chr3.3:94100321-94100340 | MS.gene69325:intron | 50.0% |
| ! | CGACTCCACATAGTGGGATA+AGG | + | chr3.3:94100316-94100335 | MS.gene69325:intron | 50.0% |
| ! | CTGGATCTCATACTGGTCTC+AGG | + | chr3.3:94103437-94103456 | MS.gene69325:CDS | 50.0% |
| ! | GAAGTGTCTGTTGGAGGAAG+AGG | + | chr3.3:94102040-94102059 | MS.gene69325:CDS | 50.0% |
| ! | GATTCACAGAGGCACAGACT+TGG | + | chr3.3:94102392-94102411 | MS.gene69325:CDS | 50.0% |
| ! | TGGTGTGAAGTGTCTGTTGG+AGG | + | chr3.3:94102034-94102053 | MS.gene69325:CDS | 50.0% |
| ! | TGTAGCCGACTCCACATAGT+GGG | + | chr3.3:94100310-94100329 | MS.gene69325:intron | 50.0% |
| !! | AGCACACTTGGGAGCATTAG+CGG | - | chr3.3:94102438-94102457 | None:intergenic | 50.0% |
| !! | CTTTCCCAGCCTTGTTGATC+AGG | - | chr3.3:94101980-94101999 | None:intergenic | 50.0% |
| !! | GGAGAATTGTAAGCGCTGGA+TGG | - | chr3.3:94099803-94099822 | None:intergenic | 50.0% |
| CAAGATCGGTATCGCTCTCC+AGG | - | chr3.3:94103246-94103265 | None:intergenic | 55.0% | |
| CAGAACGTGTTGTCCATGCC+AGG | + | chr3.3:94100976-94100995 | MS.gene69325:CDS | 55.0% | |
| CCCATGAAATCCGCAGCATC+TGG | + | chr3.3:94103418-94103437 | MS.gene69325:CDS | 55.0% | |
| CGAGGGTCTCTCAAGGTTTC+AGG | - | chr3.3:94101137-94101156 | None:intergenic | 55.0% | |
| CTGGAGAGCGATACCGATCT+TGG | + | chr3.3:94103244-94103263 | MS.gene69325:CDS | 55.0% | |
| CTGGCATGGACAACACGTTC+TGG | - | chr3.3:94100978-94100997 | None:intergenic | 55.0% | |
| GAAACCTTGAGAGACCCTCG+AGG | + | chr3.3:94101137-94101156 | MS.gene69325:CDS | 55.0% | |
| GAACGTGTTGTCCATGCCAG+GGG | + | chr3.3:94100978-94100997 | MS.gene69325:CDS | 55.0% | |
| GAAGAGGCCATTAAGGTGGG+AGG | + | chr3.3:94102056-94102075 | MS.gene69325:CDS | 55.0% | |
| GCAGATTTCCTACGAGCTCC+TGG | + | chr3.3:94101056-94101075 | MS.gene69325:CDS | 55.0% | |
| GGAGGAAGAGGCCATTAAGG+TGG | + | chr3.3:94102052-94102071 | MS.gene69325:CDS | 55.0% | |
| GGATTTCATGGGTGACGCGT+GGG | - | chr3.3:94103410-94103429 | None:intergenic | 55.0% | |
| GGTCTTGAGTAGCATGGCTG+TGG | - | chr3.3:94102088-94102107 | None:intergenic | 55.0% | |
| GTTCAAGACCAGGCGACCTA+CGG | - | chr3.3:94102252-94102271 | None:intergenic | 55.0% | |
| TCTCCTGGATGTGGGACTTG+GGG | - | chr3.3:94101830-94101849 | None:intergenic | 55.0% | |
| TCTGAACTCCAGGAGCTCGT+AGG | - | chr3.3:94101067-94101086 | None:intergenic | 55.0% | |
| TGGATGTGGGACTTGGGGTT+GGG | - | chr3.3:94101825-94101844 | None:intergenic | 55.0% | |
| TTCAAGACCAGGCGACCTAC+GGG | - | chr3.3:94102251-94102270 | None:intergenic | 55.0% | |
| !! | GCACACTTGGGAGCATTAGC+GGG | - | chr3.3:94102437-94102456 | None:intergenic | 55.0% |
| ACCCTTTGCACTTGCTCCCC+TGG | - | chr3.3:94100997-94101016 | None:intergenic | 60.0% | |
| ACCTGTCGGGTGCCCAAGAT+CGG | - | chr3.3:94103260-94103279 | None:intergenic | 60.0% | |
| CAACCCCAAGTCCCACATCC+AGG | + | chr3.3:94101824-94101843 | MS.gene69325:CDS | 60.0% | |
| CGGATTTCATGGGTGACGCG+TGG | - | chr3.3:94103411-94103430 | None:intergenic | 60.0% | |
| CTGGATGTGGGACTTGGGGT+TGG | - | chr3.3:94101826-94101845 | None:intergenic | 60.0% | |
| GCCAGGGGAGCAAGTGCAAA+GGG | + | chr3.3:94100993-94101012 | MS.gene69325:CDS | 60.0% | |
| TGCCAGGGGAGCAAGTGCAA+AGG | + | chr3.3:94100992-94101011 | MS.gene69325:CDS | 60.0% | |
| TTCATGGGTGACGCGTGGGT+CGG | - | chr3.3:94103406-94103425 | None:intergenic | 60.0% | |
| TTGCACTTGCTCCCCTGGCA+TGG | - | chr3.3:94100992-94101011 | None:intergenic | 60.0% | |
| ACCGATCTTGGGCACCCGAC+AGG | + | chr3.3:94103256-94103275 | MS.gene69325:CDS | 65.0% | |
| ! | AGGCGACCTACGGGCTGAAG+GGG | - | chr3.3:94102242-94102261 | None:intergenic | 65.0% |
| ! | CAGGCGACCTACGGGCTGAA+GGG | - | chr3.3:94102243-94102262 | None:intergenic | 65.0% |
| CCTTCAGCCCGTAGGTCGCC+TGG | + | chr3.3:94102241-94102260 | MS.gene69325:CDS | 70.0% | |
| ! | CCAGGCGACCTACGGGCTGA+AGG | - | chr3.3:94102244-94102263 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 94099604 | 94103626 | 94099604 | ID=MS.gene69325 |
| chr3.3 | mRNA | 94099604 | 94103626 | 94099604 | ID=MS.gene69325.t1;Parent=MS.gene69325 |
| chr3.3 | exon | 94099604 | 94099618 | 94099604 | ID=MS.gene69325.t1.exon1;Parent=MS.gene69325.t1 |
| chr3.3 | CDS | 94099604 | 94099618 | 94099604 | ID=cds.MS.gene69325.t1;Parent=MS.gene69325.t1 |
| chr3.3 | exon | 94099794 | 94099890 | 94099794 | ID=MS.gene69325.t1.exon2;Parent=MS.gene69325.t1 |
| chr3.3 | CDS | 94099794 | 94099890 | 94099794 | ID=cds.MS.gene69325.t1;Parent=MS.gene69325.t1 |
| chr3.3 | exon | 94100910 | 94101187 | 94100910 | ID=MS.gene69325.t1.exon3;Parent=MS.gene69325.t1 |
| chr3.3 | CDS | 94100910 | 94101187 | 94100910 | ID=cds.MS.gene69325.t1;Parent=MS.gene69325.t1 |
| chr3.3 | exon | 94101735 | 94102511 | 94101735 | ID=MS.gene69325.t1.exon4;Parent=MS.gene69325.t1 |
| chr3.3 | CDS | 94101735 | 94102511 | 94101735 | ID=cds.MS.gene69325.t1;Parent=MS.gene69325.t1 |
| chr3.3 | exon | 94102664 | 94102753 | 94102664 | ID=MS.gene69325.t1.exon5;Parent=MS.gene69325.t1 |
| chr3.3 | CDS | 94102664 | 94102753 | 94102664 | ID=cds.MS.gene69325.t1;Parent=MS.gene69325.t1 |
| chr3.3 | exon | 94103210 | 94103277 | 94103210 | ID=MS.gene69325.t1.exon6;Parent=MS.gene69325.t1 |
| chr3.3 | CDS | 94103210 | 94103277 | 94103210 | ID=cds.MS.gene69325.t1;Parent=MS.gene69325.t1 |
| chr3.3 | exon | 94103365 | 94103458 | 94103365 | ID=MS.gene69325.t1.exon7;Parent=MS.gene69325.t1 |
| chr3.3 | CDS | 94103365 | 94103458 | 94103365 | ID=cds.MS.gene69325.t1;Parent=MS.gene69325.t1 |
| chr3.3 | exon | 94103567 | 94103626 | 94103567 | ID=MS.gene69325.t1.exon8;Parent=MS.gene69325.t1 |
| chr3.3 | CDS | 94103567 | 94103626 | 94103567 | ID=cds.MS.gene69325.t1;Parent=MS.gene69325.t1 |
| Gene Sequence |
| Protein sequence |
