AlfalfaGEDB | MS.gene060463

M. sativa cultivar XinJiangDaYe / MS.gene060463

KEGG: K11254
GO: GO:0000786 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005634 GO:0032991 GO:0032993 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044815 GO:0046982 GO:0046983 GO:0097159 GO:0110165 GO:1901363
PFAM: PF15511.9

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene060463.t1	KCW52694.1	100	103	0	0	1	103	4	106	7.50E-48	199.5

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene060463.t1	P62785	100.0	103	0	0	1	103	1	103	1.8e-50	199.5

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene060463.t1	M5VRN0	100.0	103	0	0	1	103	1	103	5.4e-48	199.5

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050838	MS.gene060463	0.835696	1.44E-56	-1.69E-46
MS.gene051233	MS.gene060463	0.809365	1.96E-50	-1.69E-46
MS.gene051748	MS.gene060463	0.805015	1.64E-49	-1.69E-46
MS.gene051850	MS.gene060463	0.800982	1.12E-48	-1.69E-46
MS.gene056580	MS.gene060463	0.820111	8.15E-53	-1.69E-46
MS.gene057057	MS.gene060463	0.81921	1.31E-52	-1.69E-46
MS.gene057094	MS.gene060463	0.818074	2.37E-52	-1.69E-46
MS.gene057234	MS.gene060463	0.806325	8.69E-50	-1.69E-46
MS.gene058646	MS.gene060463	0.810447	1.15E-50	-1.69E-46
MS.gene058654	MS.gene060463	0.806856	6.71E-50	-1.69E-46
MS.gene058906	MS.gene060463	0.801731	7.84E-49	-1.69E-46
MS.gene06001	MS.gene060463	0.801179	1.02E-48	-1.69E-46
MS.gene060463	MS.gene060465	0.994236	1.24E-205	-1.69E-46
MS.gene060463	MS.gene061145	0.8188	1.62E-52	-1.69E-46
MS.gene060463	MS.gene06172	0.815174	1.06E-51	-1.69E-46
MS.gene060463	MS.gene06175	0.803637	3.17E-49	-1.69E-46
MS.gene060463	MS.gene061878	0.808241	3.41E-50	-1.69E-46
MS.gene060463	MS.gene061884	0.810616	1.05E-50	-1.69E-46
MS.gene060463	MS.gene061966	0.80385	2.86E-49	-1.69E-46
MS.gene060463	MS.gene064071	0.822672	2.09E-53	-1.69E-46
MS.gene060463	MS.gene064072	0.825282	5.10E-54	-1.69E-46
MS.gene060463	MS.gene065357	0.801615	8.28E-49	-1.69E-46
MS.gene060463	MS.gene065951	0.800105	1.68E-48	-1.69E-46
MS.gene060463	MS.gene067938	0.805487	1.30E-49	-1.69E-46
MS.gene060463	MS.gene069310	0.801324	9.50E-49	-1.69E-46
MS.gene060463	MS.gene06989	0.828916	6.89E-55	-1.69E-46
MS.gene060463	MS.gene070222	0.839438	1.58E-57	-1.69E-46
MS.gene060463	MS.gene070244	0.854414	1.25E-61	-1.69E-46
MS.gene060463	MS.gene072057	0.820479	6.71E-53	-1.69E-46
MS.gene060463	MS.gene07217	0.816915	4.32E-52	-1.69E-46
MS.gene060463	MS.gene07222	0.842626	2.30E-58	-1.69E-46
MS.gene060463	MS.gene072386	0.828763	7.50E-55	-1.69E-46
MS.gene060463	MS.gene072641	0.831114	2.01E-55	-1.69E-46
MS.gene060463	MS.gene074000	0.819951	8.87E-53	-1.69E-46
MS.gene060463	MS.gene07552	0.804374	2.23E-49	-1.69E-46
MS.gene060463	MS.gene08428	0.800281	1.55E-48	-1.69E-46
MS.gene060463	MS.gene09032	0.844558	7.02E-59	-1.69E-46
MS.gene060463	MS.gene20740	0.8393	1.72E-57	-1.69E-46
MS.gene060463	MS.gene21089	0.809151	2.18E-50	-1.69E-46
MS.gene060463	MS.gene22499	0.818284	2.12E-52	-1.69E-46
MS.gene060463	MS.gene22968	0.82791	1.21E-54	-1.69E-46
MS.gene060463	MS.gene23059	0.817193	3.74E-52	-1.69E-46
MS.gene060463	MS.gene24102	0.801399	9.17E-49	-1.69E-46
MS.gene060463	MS.gene24930	0.826808	2.21E-54	-1.69E-46
MS.gene060463	MS.gene26426	0.830497	2.84E-55	-1.69E-46
MS.gene060463	MS.gene27879	0.812603	3.90E-51	-1.69E-46
MS.gene060463	MS.gene28159	0.825342	4.94E-54	-1.69E-46
MS.gene060463	MS.gene28632	0.830669	2.58E-55	-1.69E-46
MS.gene060463	MS.gene29053	-0.80142	9.08E-49	-1.69E-46
MS.gene060463	MS.gene29891	0.801329	9.48E-49	-1.69E-46
MS.gene060463	MS.gene31196	0.846205	2.51E-59	-1.69E-46
MS.gene060463	MS.gene33384	0.831209	1.90E-55	-1.69E-46
MS.gene060463	MS.gene33907	0.818075	2.37E-52	-1.69E-46
MS.gene060463	MS.gene36468	0.801601	8.34E-49	-1.69E-46
MS.gene060463	MS.gene39317	0.804759	1.85E-49	-1.69E-46
MS.gene060463	MS.gene40055	0.826451	2.69E-54	-1.69E-46
MS.gene060463	MS.gene44260	0.85018	2.01E-60	-1.69E-46
MS.gene060463	MS.gene49777	0.818912	1.53E-52	-1.69E-46
MS.gene060463	MS.gene51445	0.83209	1.15E-55	-1.69E-46
MS.gene060463	MS.gene51658	0.803071	4.15E-49	-1.69E-46
MS.gene060463	MS.gene52837	0.807751	4.34E-50	-1.69E-46
MS.gene060463	MS.gene54919	0.812886	3.38E-51	-1.69E-46
MS.gene060463	MS.gene55282	0.804197	2.42E-49	-1.69E-46
MS.gene060463	MS.gene55530	0.829515	4.93E-55	-1.69E-46
MS.gene060463	MS.gene55887	0.814485	1.50E-51	-1.69E-46
MS.gene060463	MS.gene57210	0.817105	3.92E-52	-1.69E-46
MS.gene060463	MS.gene58098	0.815783	7.74E-52	-1.69E-46
MS.gene060463	MS.gene58693	0.808576	2.89E-50	-1.69E-46
MS.gene060463	MS.gene58854	0.928413	2.99E-92	-1.69E-46
MS.gene060463	MS.gene61542	0.809731	1.64E-50	-1.69E-46
MS.gene060463	MS.gene62834	0.805394	1.36E-49	-1.69E-46
MS.gene060463	MS.gene63902	0.810678	1.02E-50	-1.69E-46
MS.gene060463	MS.gene64920	0.809934	1.48E-50	-1.69E-46
MS.gene060463	MS.gene65412	0.820437	6.86E-53	-1.69E-46
MS.gene060463	MS.gene66089	0.874729	5.38E-68	-1.69E-46
MS.gene060463	MS.gene66818	0.811375	7.22E-51	-1.69E-46
MS.gene060463	MS.gene68171	0.821528	3.85E-53	-1.69E-46
MS.gene060463	MS.gene68810	0.815064	1.12E-51	-1.69E-46
MS.gene060463	MS.gene69649	0.826592	2.49E-54	-1.69E-46
MS.gene060463	MS.gene70305	0.819205	1.31E-52	-1.69E-46
MS.gene060463	MS.gene70530	0.83636	9.79E-57	-1.69E-46
MS.gene060463	MS.gene74458	0.802019	6.84E-49	-1.69E-46
MS.gene060463	MS.gene74854	0.815447	9.20E-52	-1.69E-46
MS.gene060463	MS.gene76440	0.808132	3.60E-50	-1.69E-46
MS.gene060463	MS.gene76478	0.851479	8.64E-61	-1.69E-46
MS.gene060463	MS.gene79605	0.850936	1.23E-60	-1.69E-46
MS.gene060463	MS.gene81280	0.804823	1.80E-49	-1.69E-46
MS.gene060463	MS.gene81361	0.808889	2.48E-50	-1.69E-46
MS.gene060463	MS.gene83217	0.826674	2.38E-54	-1.69E-46
MS.gene060463	MS.gene85779	0.829199	5.88E-55	-1.69E-46
MS.gene060463	MS.gene86937	0.814705	1.34E-51	-1.69E-46
MS.gene060463	MS.gene87972	0.839838	1.25E-57	-1.69E-46
MS.gene060463	MS.gene88427	0.822028	2.95E-53	-1.69E-46
MS.gene060463	MS.gene88859	0.801768	7.70E-49	-1.69E-46
MS.gene060463	MS.gene88976	0.802864	4.58E-49	-1.69E-46
MS.gene060463	MS.gene89677	0.825217	5.29E-54	-1.69E-46
MS.gene060463	MS.gene91524	0.855849	4.78E-62	-1.69E-46
MS.gene060463	MS.gene91526	0.843562	1.30E-58	-1.69E-46
MS.gene060463	MS.gene92572	0.856554	2.97E-62	-1.69E-46
MS.gene060463	MS.gene92818	0.856506	3.07E-62	-1.69E-46
MS.gene060463	MS.gene92819	0.857013	2.18E-62	-1.69E-46
MS.gene060463	MS.gene94949	0.836371	9.73E-57	-1.69E-46
MS.gene060463	MS.gene96690	0.807776	4.28E-50	-1.69E-46

PPI:

Gene1	Gene2	Type
MS.gene060463	MS.gene04064	PPI
MS.gene071136	MS.gene060463	PPI
MS.gene060463	MS.gene018580	PPI
MS.gene060463	MS.gene004124	PPI
MS.gene060463	MS.gene071136	PPI
MS.gene060463	MS.gene88680	PPI
MS.gene060463	MS.gene30920	PPI
MS.gene060463	MS.gene04052	PPI
MS.gene060463	MS.gene061866	PPI
MS.gene056215	MS.gene060463	PPI
MS.gene060463	MS.gene64650	PPI
MS.gene060463	MS.gene79195	PPI
MS.gene060463	MS.gene048705	PPI
MS.gene060463	MS.gene061876	PPI
MS.gene060463	MS.gene061874	PPI
MS.gene060463	MS.gene04576	PPI
MS.gene060463	MS.gene056215	PPI
MS.gene060463	MS.gene061869	PPI
MS.gene060463	MS.gene64920	PPI
MS.gene035787	MS.gene060463	PPI
MS.gene060463	MS.gene035787	PPI
MS.gene060463	MS.gene04452	PPI
MS.gene060463	MS.gene070244	PPI
MS.gene060463	MS.gene89487	PPI
MS.gene060463	MS.gene038469	PPI
MS.gene060463	MS.gene061867	PPI
MS.gene060463	MS.gene008276	PPI
MS.gene060463	MS.gene012391	PPI
MS.gene060463	MS.gene05619	PPI
MS.gene060463	MS.gene73136	PPI
MS.gene060463	MS.gene049821	PPI
MS.gene060463	MS.gene78578	PPI
MS.gene060463	MS.gene04068	PPI
MS.gene060463	MS.gene022946	PPI
MS.gene060463	MS.gene035719	PPI
MS.gene060463	MS.gene05623	PPI
MS.gene060463	MS.gene061872	PPI
MS.gene060463	MS.gene89488	PPI
MS.gene070241	MS.gene060463	PPI
MS.gene060463	MS.gene58854	PPI
MS.gene060463	MS.gene66225	PPI
MS.gene060463	MS.gene035720	PPI
MS.gene060463	MS.gene70955	PPI
MS.gene060463	MS.gene61017	PPI
MS.gene060463	MS.gene09871	PPI
MS.gene061876	MS.gene060463	PPI
MS.gene060463	MS.gene012390	PPI
MS.gene060463	MS.gene08121	PPI
MS.gene012391	MS.gene060463	PPI
MS.gene060463	MS.gene04067	PPI
MS.gene060463	MS.gene064557	PPI
MS.gene060463	MS.gene049705	PPI
MS.gene060463	MS.gene04434	PPI
MS.gene060463	MS.gene070907	PPI
MS.gene060463	MS.gene04392	PPI
MS.gene060463	MS.gene010219	PPI
MS.gene060463	MS.gene04433	PPI
MS.gene060463	MS.gene05608	PPI
MS.gene060463	MS.gene040383	PPI
MS.gene060463	MS.gene68545	PPI
MS.gene060463	MS.gene070242	PPI
MS.gene060463	MS.gene016624	PPI
MS.gene060463	MS.gene048746	PPI
MS.gene060463	MS.gene71215	PPI
MS.gene060463	MS.gene09873	PPI
MS.gene060463	MS.gene028629	PPI
MS.gene060463	MS.gene043967	PPI
MS.gene060463	MS.gene31196	PPI
MS.gene060463	MS.gene060465	PPI
MS.gene060463	MS.gene08053	PPI
MS.gene060463	MS.gene035897	PPI
MS.gene060463	MS.gene035721	PPI
MS.gene060463	MS.gene061870	PPI
MS.gene78578	MS.gene060463	PPI
MS.gene060463	MS.gene070241	PPI
MS.gene060463	MS.gene072493	PPI
MS.gene060463	MS.gene84536	PPI
MS.gene060463	MS.gene035896	PPI
MS.gene060463	MS.gene88681	PPI
MS.gene060463	MS.gene82546	PPI
MS.gene060463	MS.gene60093	PPI
MS.gene060463	MS.gene08122	PPI
MS.gene060463	MS.gene035718	PPI
MS.gene060463	MS.gene022932	PPI
MS.gene04067	MS.gene060463	PPI
MS.gene71215	MS.gene060463	PPI
MS.gene060463	MS.gene010220	PPI
MS.gene060463	MS.gene04972	PPI
MS.gene060463	MS.gene004121	PPI
MS.gene060463	MS.gene62520	PPI
MS.gene060463	MS.gene018578	PPI
MS.gene060463	MS.gene009027	PPI

Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene060463.t1	MTR_7g029510	100.000	103	0	1	103	1	103	2.85e-68	199
MS.gene060463.t1	MTR_7g099610	100.000	103	0	1	103	1	103	2.85e-68	199
MS.gene060463.t1	MTR_5g063620	100.000	103	0	1	103	1	103	2.85e-68	199
MS.gene060463.t1	MTR_4g061827	100.000	103	0	1	103	1	103	2.85e-68	199
MS.gene060463.t1	MTR_4g061920	100.000	103	0	1	103	1	103	2.85e-68	199
MS.gene060463.t1	MTR_3g462400	100.000	103	0	1	103	1	103	2.85e-68	199
MS.gene060463.t1	MTR_3g054380	100.000	103	0	1	103	1	103	2.85e-68	199
MS.gene060463.t1	MTR_3g462730	100.000	103	0	1	103	1	103	2.85e-68	199
MS.gene060463.t1	MTR_3g462510	100.000	103	0	1	103	1	103	2.85e-68	199
MS.gene060463.t1	MTR_3g070920	100.000	103	0	1	103	1	103	2.85e-68	199
MS.gene060463.t1	MTR_3g061440	100.000	103	0	1	103	1	103	2.85e-68	199
MS.gene060463.t1	MTR_3g462410	100.000	103	0	1	103	1	103	2.85e-68	199
MS.gene060463.t1	MTR_2g096100	100.000	103	0	1	103	1	103	2.85e-68	199
MS.gene060463.t1	MTR_8g038460	100.000	103	0	1	103	1	103	2.85e-68	199
MS.gene060463.t1	MTR_4g128150	100.000	102	0	1	102	1	102	1.67e-66	204
MS.gene060463.t1	MTR_7g029520	84.000	50	8	27	76	1	50	2.15e-21	87.0

Query id	Subject id	identity %	alignment length	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene060463.t1	AT5G59970	100.000	103	0	1	103	1	103	2.99e-68	199
MS.gene060463.t1	AT5G59690	100.000	103	0	1	103	1	103	2.99e-68	199
MS.gene060463.t1	AT5G59970	100.000	103	0	1	103	1	103	2.99e-68	199
MS.gene060463.t1	AT3G46320	100.000	103	0	1	103	1	103	2.99e-68	199
MS.gene060463.t1	AT3G45930	100.000	103	0	1	103	1	103	2.99e-68	199
MS.gene060463.t1	AT3G53730	100.000	103	0	1	103	1	103	2.99e-68	199
MS.gene060463.t1	AT2G28740	100.000	103	0	1	103	1	103	2.99e-68	199
MS.gene060463.t1	AT1G07660	100.000	103	0	1	103	1	103	2.99e-68	199
MS.gene060463.t1	AT1G07820	100.000	103	0	1	103	1	103	2.99e-68	199
MS.gene060463.t1	AT1G07820	100.000	103	0	1	103	1	103	2.99e-68	199
MS.gene060463.t1	AT1G07660	83.495	103	1	1	103	1	86	4.34e-51	155

Find 0 sgRNAs with CRISPR-Local

Find 28 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
	TTGATCTATGAGGAAACAAG+AGG	-	47697:10596-10615	MS.gene060463:CDS	35.0%
	AATCAGCGGTTTGATCTATG+AGG	-	47697:10586-10605	MS.gene060463:CDS	40.0%
	GGAGGTAAAGGATTAGGAAA+GGG	-	47697:10467-10486	MS.gene060463:CDS	40.0%
	GTTTATGCCCTTAAGAGACA+GGG	-	47697:10710-10729	MS.gene060463:CDS	40.0%
	TGATTCCTTGAATGTTGTCG+CGG	+	47697:10520-10539	MS.gene060463:intergenic	40.0%
	TGTTTATGCCCTTAAGAGAC+AGG	-	47697:10709-10728	MS.gene060463:CDS	40.0%
!!	AGGAGTGTTGAAGATCTTCT+TGG	-	47697:10616-10635	MS.gene060463:CDS	40.0%
	AAAGCCAGCAATTCGTCGAT+TGG	-	47697:10541-10560	MS.gene060463:CDS	45.0%
	GGAAAGGGAGGTAAAGGATT+AGG	-	47697:10461-10480	MS.gene060463:CDS	45.0%
	GGAAGAACCCTCTATGGTTT+CGG	-	47697:10731-10750	MS.gene060463:CDS	45.0%
	GGGAGGTAAAGGATTAGGAA+AGG	-	47697:10466-10485	MS.gene060463:CDS	45.0%
	GGTAAAGGATTAGGAAAGGG+AGG	-	47697:10470-10489	MS.gene060463:CDS	45.0%
	GGTTCTTCCCTGTCTCTTAA+GGG	+	47697:10720-10739	MS.gene060463:intergenic	45.0%
	TCAACCACCGAAACCATAGA+GGG	+	47697:10741-10760	MS.gene060463:intergenic	45.0%
	TTACTTACACTGAGCATGCG+AGG	-	47697:10660-10679	MS.gene060463:CDS	45.0%
!	GGAGGTGTGAAAAGAATCAG+CGG	-	47697:10572-10591	MS.gene060463:CDS	45.0%
	AGAACCCTCTATGGTTTCGG+TGG	-	47697:10734-10753	MS.gene060463:CDS	50.0%
	AGACAGGGAAGAACCCTCTA+TGG	-	47697:10725-10744	MS.gene060463:CDS	50.0%
	AGGTGCAAAGAGACATCGCA+AGG	-	47697:10490-10509	MS.gene060463:CDS	50.0%
	GAGGAAGACTGTGACTGCTA+TGG	-	47697:10682-10701	MS.gene060463:CDS	50.0%
	GGGTTCTTCCCTGTCTCTTA+AGG	+	47697:10721-10740	MS.gene060463:intergenic	50.0%
	GTTCTCCGCGACAACATTCA+AGG	-	47697:10512-10531	MS.gene060463:CDS	50.0%
!	ATTCGTCGATTGGCGAGAAG+AGG	-	47697:10551-10570	MS.gene060463:CDS	50.0%
	ATGTCTGGTCGTGGAAAGGG+AGG	-	47697:10449-10468	MS.gene060463:CDS	55.0%
	CTCGCCAATCGACGAATTGC+TGG	+	47697:10548-10567	MS.gene060463:intergenic	55.0%
	CTTACACTGAGCATGCGAGG+AGG	-	47697:10663-10682	MS.gene060463:CDS	55.0%
	GGTCGTGGAAAGGGAGGTAA+AGG	-	47697:10455-10474	MS.gene060463:CDS	55.0%
!	CGTCGATTGGCGAGAAGAGG+AGG	-	47697:10554-10573	MS.gene060463:CDS	60.0%

Chromosome	Type	Strat	End	Strand	Name
47697	gene	10449	10760	10449	ID=MS.gene060463
47697	mRNA	10449	10760	10449	ID=MS.gene060463.t1;Parent=MS.gene060463
47697	exon	10449	10760	10449	ID=MS.gene060463.t1.exon1;Parent=MS.gene060463.t1
47697	CDS	10449	10760	10449	ID=cds.MS.gene060463.t1;Parent=MS.gene060463.t1

Gene Sequence	>MS.gene060463 ATGTCTGGTCGTGGAAAGGGAGGTAAAGGATTAGGAAAGGGAGGTGCAAAGAGACATCGCAAGGTTCTCCGCGACAACATTCAAGGAATCACAAAGCCAGCAATTCGTCGATTGGCGAGAAGAGGAGGTGTGAAAAGAATCAGCGGTTTGATCTATGAGGAAACAAGAGGAGTGTTGAAGATCTTCTTGGAGAATGTGATAAGAGATGCTGTTACTTACACTGAGCATGCGAGGAGGAAGACTGTGACTGCTATGGATGTTGTTTATGCCCTTAAGAGACAGGGAAGAACCCTCTATGGTTTCGGTGGTTGA
Protein sequence	>MS.gene060463.t1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG