Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71287.t1 | XP_003601554.1 | 97.8 | 226 | 5 | 0 | 1 | 226 | 1 | 226 | 2.40E-123 | 451.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71287.t1 | Q9SFC6 | 80.2 | 177 | 35 | 0 | 49 | 225 | 61 | 237 | 1.9e-81 | 303.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71287.t1 | G7J8X4 | 97.8 | 226 | 5 | 0 | 1 | 226 | 1 | 226 | 1.7e-123 | 451.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050593 | MS.gene71287 | 0.810513 | 1.11E-50 | -1.69E-46 |
| MS.gene051255 | MS.gene71287 | 0.812234 | 4.70E-51 | -1.69E-46 |
| MS.gene051360 | MS.gene71287 | 0.810972 | 8.83E-51 | -1.69E-46 |
| MS.gene051387 | MS.gene71287 | 0.809205 | 2.12E-50 | -1.69E-46 |
| MS.gene052481 | MS.gene71287 | 0.806531 | 7.86E-50 | -1.69E-46 |
| MS.gene052485 | MS.gene71287 | 0.805597 | 1.24E-49 | -1.69E-46 |
| MS.gene05335 | MS.gene71287 | 0.804236 | 2.38E-49 | -1.69E-46 |
| MS.gene053449 | MS.gene71287 | 0.806971 | 6.35E-50 | -1.69E-46 |
| MS.gene053813 | MS.gene71287 | 0.803337 | 3.66E-49 | -1.69E-46 |
| MS.gene05492 | MS.gene71287 | 0.825728 | 4.00E-54 | -1.69E-46 |
| MS.gene055909 | MS.gene71287 | 0.81066 | 1.03E-50 | -1.69E-46 |
| MS.gene055911 | MS.gene71287 | 0.816582 | 5.13E-52 | -1.69E-46 |
| MS.gene056166 | MS.gene71287 | 0.815655 | 8.27E-52 | -1.69E-46 |
| MS.gene056422 | MS.gene71287 | 0.836573 | 8.65E-57 | -1.69E-46 |
| MS.gene056448 | MS.gene71287 | 0.817345 | 3.46E-52 | -1.69E-46 |
| MS.gene056511 | MS.gene71287 | 0.816521 | 5.30E-52 | -1.69E-46 |
| MS.gene05842 | MS.gene71287 | 0.804545 | 2.05E-49 | -1.69E-46 |
| MS.gene058700 | MS.gene71287 | 0.803736 | 3.02E-49 | -1.69E-46 |
| MS.gene058995 | MS.gene71287 | 0.802841 | 4.63E-49 | -1.69E-46 |
| MS.gene059688 | MS.gene71287 | 0.801601 | 8.34E-49 | -1.69E-46 |
| MS.gene059711 | MS.gene71287 | 0.81659 | 5.11E-52 | -1.69E-46 |
| MS.gene059933 | MS.gene71287 | 0.811836 | 5.74E-51 | -1.69E-46 |
| MS.gene060401 | MS.gene71287 | 0.844383 | 7.82E-59 | -1.69E-46 |
| MS.gene060403 | MS.gene71287 | 0.815762 | 7.83E-52 | -1.69E-46 |
| MS.gene060837 | MS.gene71287 | 0.868857 | 4.78E-66 | -1.69E-46 |
| MS.gene060986 | MS.gene71287 | 0.807289 | 5.44E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene71287 | MS.gene012136 | PPI |
| MS.gene71287 | MS.gene59498 | PPI |
| MS.gene71287 | MS.gene67475 | PPI |
| MS.gene67474 | MS.gene71287 | PPI |
| MS.gene71287 | MS.gene67474 | PPI |
| MS.gene71287 | MS.gene64799 | PPI |
| MS.gene71287 | MS.gene017610 | PPI |
| MS.gene71287 | MS.gene44220 | PPI |
| MS.gene71287 | MS.gene28870 | PPI |
| MS.gene71287 | MS.gene67709 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71287.t1 | MTR_3g082970 | 97.788 | 226 | 5 | 0 | 1 | 226 | 1 | 226 | 1.53e-166 | 458 |
| MS.gene71287.t1 | MTR_2g025740 | 71.875 | 224 | 49 | 2 | 2 | 225 | 23 | 232 | 4.18e-110 | 315 |
| MS.gene71287.t1 | MTR_4g133060 | 70.335 | 209 | 62 | 0 | 17 | 225 | 13 | 221 | 4.17e-105 | 303 |
| MS.gene71287.t1 | MTR_4g133060 | 73.196 | 194 | 52 | 0 | 32 | 225 | 2 | 195 | 3.59e-102 | 294 |
| MS.gene71287.t1 | MTR_4g133060 | 65.366 | 205 | 67 | 1 | 17 | 217 | 13 | 217 | 1.12e-90 | 266 |
| MS.gene71287.t1 | MTR_8g097200 | 67.052 | 173 | 57 | 0 | 53 | 225 | 59 | 231 | 8.05e-86 | 254 |
| MS.gene71287.t1 | MTR_3g084940 | 63.636 | 176 | 63 | 1 | 52 | 226 | 52 | 227 | 1.99e-78 | 235 |
| MS.gene71287.t1 | MTR_7g097270 | 51.337 | 187 | 88 | 3 | 38 | 223 | 33 | 217 | 5.89e-63 | 196 |
| MS.gene71287.t1 | MTR_7g097270 | 49.600 | 125 | 60 | 3 | 38 | 161 | 33 | 155 | 4.06e-33 | 118 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71287.t1 | AT3G07880 | 77.114 | 201 | 45 | 1 | 25 | 225 | 38 | 237 | 3.48e-113 | 324 |
| MS.gene71287.t1 | AT1G62450 | 64.319 | 213 | 73 | 2 | 15 | 225 | 11 | 222 | 1.56e-91 | 268 |
| MS.gene71287.t1 | AT1G12070 | 59.912 | 227 | 84 | 2 | 1 | 225 | 1 | 222 | 1.64e-88 | 261 |
Find 56 sgRNAs with CRISPR-Local
Find 82 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGAGCAATAACATTGTTTC+TGG | 0.193009 | 3.4:-78130921 | MS.gene71287:CDS |
| CATAGGACCTAGCTGTATTT+TGG | 0.248019 | 3.4:+78131656 | None:intergenic |
| CCAGAGGGTGTGACTTCTTC+TGG | 0.286287 | 3.4:+78130689 | None:intergenic |
| AAATGGAAGGAGCAGCTTCT+TGG | 0.366946 | 3.4:-78131446 | MS.gene71287:CDS |
| TGTTTGGAAGACTGCTGTTA+AGG | 0.371169 | 3.4:-78130880 | MS.gene71287:CDS |
| GAGGAGGAAGAAGATGAATA+TGG | 0.374764 | 3.4:-78131681 | MS.gene71287:CDS |
| GTTTGGAAGACTGCTGTTAA+GGG | 0.387643 | 3.4:-78130879 | MS.gene71287:intron |
| AATGGAAGGAGCAGCTTCTT+GGG | 0.389589 | 3.4:-78131445 | MS.gene71287:CDS |
| TAAAATACACCAATACTGTT+TGG | 0.391465 | 3.4:-78130896 | MS.gene71287:CDS |
| TATAGGACGATGAGAGTCTA+AGG | 0.397474 | 3.4:-78131469 | MS.gene71287:intron |
| GTTCTTCCCATTCCTGAAGA+TGG | 0.408171 | 3.4:-78131011 | MS.gene71287:CDS |
| CCAGAAGAAGTCACACCCTC+TGG | 0.416770 | 3.4:-78130689 | MS.gene71287:CDS |
| AGGCTTGTAAAATTCACTTC+AGG | 0.420910 | 3.4:+78131065 | None:intergenic |
| GATAATGAAAACAAAGAAAC+AGG | 0.423638 | 3.4:-78131789 | MS.gene71287:CDS |
| TCTGGCATCTCATGTGTGTA+AGG | 0.427995 | 3.4:+78130707 | None:intergenic |
| GTGTGTAAGGCTCTGGTTGA+GGG | 0.432758 | 3.4:+78130720 | None:intergenic |
| ATCTCATGTGTGTAAGGCTC+TGG | 0.437007 | 3.4:+78130713 | None:intergenic |
| ACGATGAGAGTCTAAGGAAA+TGG | 0.439473 | 3.4:-78131463 | MS.gene71287:CDS |
| TGAGCAATAACATTGTTTCT+GGG | 0.463614 | 3.4:-78130920 | MS.gene71287:CDS |
| CAAAATACAGCTAGGTCCTA+TGG | 0.489028 | 3.4:-78131655 | MS.gene71287:CDS |
| AGAACACCTTGAGAAAGATA+AGG | 0.492651 | 3.4:-78131622 | MS.gene71287:intron |
| AGAAGATTCACTCGTATGCC+TGG | 0.493330 | 3.4:+78131716 | None:intergenic |
| TGTGTGTAAGGCTCTGGTTG+AGG | 0.496739 | 3.4:+78130719 | None:intergenic |
| TTGTGGTTTACTCTTAAAGA+AGG | 0.514851 | 3.4:-78130975 | MS.gene71287:CDS |
| CACCCTCTGGGATATTTGCT+AGG | 0.518348 | 3.4:-78130676 | MS.gene71287:CDS |
| TCCTGAAGATGGAAAACCAC+AGG | 0.525613 | 3.4:-78131000 | MS.gene71287:CDS |
| TGATGACAATAAATGTTACT+TGG | 0.527867 | 3.4:-78130394 | MS.gene71287:CDS |
| AGCCTTTCTATAATCTCTCC+TGG | 0.528718 | 3.4:-78131047 | MS.gene71287:CDS |
| ATGGAAAACCACAGGGATTG+TGG | 0.531586 | 3.4:-78130992 | MS.gene71287:CDS |
| ACCCTCTGGGATATTTGCTA+GGG | 0.538296 | 3.4:-78130675 | MS.gene71287:CDS |
| TCACTCGTATGCCTGGTAAG+AGG | 0.546518 | 3.4:+78131723 | None:intergenic |
| ACAAAACCTTATCTTTCTCA+AGG | 0.549448 | 3.4:+78131616 | None:intergenic |
| AACATCATGAGCCTCTTACC+AGG | 0.549984 | 3.4:-78131734 | MS.gene71287:CDS |
| ACAGGACAAACTAGTGAGGC+TGG | 0.550189 | 3.4:-78131771 | MS.gene71287:CDS |
| AAGCTGAATTTCAGACGGTA+AGG | 0.552089 | 3.4:+78130948 | None:intergenic |
| ACAATATTCTGCAAGATCAA+AGG | 0.554037 | 3.4:-78130651 | MS.gene71287:intron |
| GATAGCTCAAAAGAGATGCT+TGG | 0.554702 | 3.4:-78130752 | MS.gene71287:CDS |
| GTCGATGTCAACAACATTGG+AGG | 0.554851 | 3.4:-78131419 | MS.gene71287:intron |
| AGCAGTCTTCCAAACAGTAT+TGG | 0.558230 | 3.4:+78130887 | None:intergenic |
| CAGAAGAAGTCACACCCTCT+GGG | 0.582116 | 3.4:-78130688 | MS.gene71287:CDS |
| TACCAGGAGAGATTATAGAA+AGG | 0.583890 | 3.4:+78131045 | None:intergenic |
| TATGGAGCCAAAATACAGCT+AGG | 0.601518 | 3.4:-78131663 | MS.gene71287:CDS |
| TGTTCTTTAATAGTGACCAT+AGG | 0.603238 | 3.4:+78131639 | None:intergenic |
| AGTGTCGATGTCAACAACAT+TGG | 0.603658 | 3.4:-78131422 | MS.gene71287:CDS |
| CCCCTAGCAAATATCCCAGA+GGG | 0.617735 | 3.4:+78130674 | None:intergenic |
| TGAGAGTCTAAGGAAATGGA+AGG | 0.619544 | 3.4:-78131459 | MS.gene71287:CDS |
| TTCTGTCTATGCAACTGAGG+AGG | 0.624555 | 3.4:-78131697 | MS.gene71287:CDS |
| AGAACAATGTCATCTCTACC+AGG | 0.626041 | 3.4:+78131029 | None:intergenic |
| CAACAAAGCTGAATTTCAGA+CGG | 0.649490 | 3.4:+78130943 | None:intergenic |
| CCTGAAGATGGAAAACCACA+GGG | 0.658329 | 3.4:-78130999 | MS.gene71287:CDS |
| CCCTCTGGGATATTTGCTAG+GGG | 0.670702 | 3.4:-78130674 | MS.gene71287:CDS |
| AGAGTAAACCACAATCCCTG+TGG | 0.676637 | 3.4:+78130984 | None:intergenic |
| GGACAAACTAGTGAGGCTGG+TGG | 0.680791 | 3.4:-78131768 | MS.gene71287:CDS |
| ATCTTCTGTCTATGCAACTG+AGG | 0.702591 | 3.4:-78131700 | MS.gene71287:CDS |
| AGAAACAGGACAAACTAGTG+AGG | 0.703043 | 3.4:-78131775 | MS.gene71287:CDS |
| TCCCCTAGCAAATATCCCAG+AGG | 0.719574 | 3.4:+78130673 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATTGTATAATTTTTTTGT+TGG | - | chr3.4:78131696-78131715 | MS.gene71287:CDS | 10.0% |
| !! | GTAATTTAAGTAATTTACTT+AGG | + | chr3.4:78130606-78130625 | None:intergenic | 15.0% |
| !! | GTTACCAATAAATAATTATG+AGG | + | chr3.4:78131607-78131626 | None:intergenic | 20.0% |
| !! | TGTTCCTCATAATTATTTAT+TGG | - | chr3.4:78131600-78131619 | MS.gene71287:intron | 20.0% |
| !! | TTGTTACACTTAATATGTAA+CGG | + | chr3.4:78131631-78131650 | None:intergenic | 20.0% |
| !!! | TAAAACAAATGTTATTTCAG+TGG | - | chr3.4:78131377-78131396 | MS.gene71287:intron | 20.0% |
| !!! | TCAACTATACTTTTGATATT+AGG | - | chr3.4:78131783-78131802 | MS.gene71287:CDS | 20.0% |
| !!! | TGAACAATTTTCTTTTACAA+AGG | + | chr3.4:78130814-78130833 | None:intergenic | 20.0% |
| !!! | TGTTCATTGTTTATGTTTTT+GGG | - | chr3.4:78130646-78130665 | MS.gene71287:intron | 20.0% |
| !!! | TTGTTCATTGTTTATGTTTT+TGG | - | chr3.4:78130645-78130664 | MS.gene71287:intron | 20.0% |
| ! | GATAATGAAAACAAAGAAAC+AGG | - | chr3.4:78130362-78130381 | MS.gene71287:CDS | 25.0% |
| ! | GTGTTACAAAATTGGAAATT+TGG | + | chr3.4:78131332-78131351 | None:intergenic | 25.0% |
| ! | TAAAATACACCAATACTGTT+TGG | - | chr3.4:78131255-78131274 | MS.gene71287:intron | 25.0% |
| ! | TGATGACAATAAATGTTACT+TGG | - | chr3.4:78131757-78131776 | MS.gene71287:CDS | 25.0% |
| !! | CTATACTTTTGATATTAGGA+AGG | - | chr3.4:78131787-78131806 | MS.gene71287:CDS | 25.0% |
| !! | TTTTGATATTAGGAAGGATT+GGG | - | chr3.4:78131793-78131812 | MS.gene71287:CDS | 25.0% |
| !!! | AGATAAGGTTTTGTTTCTTT+TGG | - | chr3.4:78130544-78130563 | MS.gene71287:intron | 25.0% |
| ACAAAACCTTATCTTTCTCA+AGG | + | chr3.4:78130538-78130557 | None:intergenic | 30.0% | |
| ACAATATTCTGCAAGATCAA+AGG | - | chr3.4:78131500-78131519 | MS.gene71287:intron | 30.0% | |
| AGGGATAAGTGTTACAAAAT+TGG | + | chr3.4:78131340-78131359 | None:intergenic | 30.0% | |
| TGTTCTTTAATAGTGACCAT+AGG | + | chr3.4:78130515-78130534 | None:intergenic | 30.0% | |
| TTGTGGTTTACTCTTAAAGA+AGG | - | chr3.4:78131176-78131195 | MS.gene71287:intron | 30.0% | |
| ! | CATTGGAGGTATATAAATCA+CGG | - | chr3.4:78130746-78130765 | MS.gene71287:CDS | 30.0% |
| ! | CTTTTGATATTAGGAAGGAT+TGG | - | chr3.4:78131792-78131811 | MS.gene71287:CDS | 30.0% |
| ! | TATTTTTCTTGTGCAGTTTC+TGG | - | chr3.4:78131733-78131752 | MS.gene71287:CDS | 30.0% |
| ! | TGAGCAATAACATTGTTTCT+GGG | - | chr3.4:78131231-78131250 | MS.gene71287:intron | 30.0% |
| AGAACACCTTGAGAAAGATA+AGG | - | chr3.4:78130529-78130548 | MS.gene71287:intron | 35.0% | |
| AGGCTTGTAAAATTCACTTC+AGG | + | chr3.4:78131089-78131108 | None:intergenic | 35.0% | |
| CAACAAAGCTGAATTTCAGA+CGG | + | chr3.4:78131211-78131230 | None:intergenic | 35.0% | |
| GTGAGCAATAACATTGTTTC+TGG | - | chr3.4:78131230-78131249 | MS.gene71287:intron | 35.0% | |
| TACCAGGAGAGATTATAGAA+AGG | + | chr3.4:78131109-78131128 | None:intergenic | 35.0% | |
| TGGGTTGTACGAATGAATAT+AGG | - | chr3.4:78130665-78130684 | MS.gene71287:CDS | 35.0% | |
| AAGCTGAATTTCAGACGGTA+AGG | + | chr3.4:78131206-78131225 | None:intergenic | 40.0% | |
| ACGATGAGAGTCTAAGGAAA+TGG | - | chr3.4:78130688-78130707 | MS.gene71287:CDS | 40.0% | |
| AGAAACAGGACAAACTAGTG+AGG | - | chr3.4:78130376-78130395 | MS.gene71287:CDS | 40.0% | |
| AGAACAATGTCATCTCTACC+AGG | + | chr3.4:78131125-78131144 | None:intergenic | 40.0% | |
| AGCAGTCTTCCAAACAGTAT+TGG | + | chr3.4:78131267-78131286 | None:intergenic | 40.0% | |
| AGCCTTTCTATAATCTCTCC+TGG | - | chr3.4:78131104-78131123 | MS.gene71287:intron | 40.0% | |
| ATCTTCTGTCTATGCAACTG+AGG | - | chr3.4:78130451-78130470 | MS.gene71287:intron | 40.0% | |
| CAAAATACAGCTAGGTCCTA+TGG | - | chr3.4:78130496-78130515 | MS.gene71287:intron | 40.0% | |
| GAGGAGGAAGAAGATGAATA+TGG | - | chr3.4:78130470-78130489 | MS.gene71287:intron | 40.0% | |
| GATAGCTCAAAAGAGATGCT+TGG | - | chr3.4:78131399-78131418 | MS.gene71287:intron | 40.0% | |
| GTTTGGAAGACTGCTGTTAA+GGG | - | chr3.4:78131272-78131291 | MS.gene71287:intron | 40.0% | |
| TATAGGACGATGAGAGTCTA+AGG | - | chr3.4:78130682-78130701 | MS.gene71287:CDS | 40.0% | |
| TATGGAGCCAAAATACAGCT+AGG | - | chr3.4:78130488-78130507 | MS.gene71287:intron | 40.0% | |
| TGAGAGTCTAAGGAAATGGA+AGG | - | chr3.4:78130692-78130711 | MS.gene71287:CDS | 40.0% | |
| TGTTTGGAAGACTGCTGTTA+AGG | - | chr3.4:78131271-78131290 | MS.gene71287:intron | 40.0% | |
| ! | CATAGGACCTAGCTGTATTT+TGG | + | chr3.4:78130498-78130517 | None:intergenic | 40.0% |
| ! | GGTTTTCCATCTTCAGGAAT+GGG | + | chr3.4:78131149-78131168 | None:intergenic | 40.0% |
| ! | TGGTTTTCCATCTTCAGGAA+TGG | + | chr3.4:78131150-78131169 | None:intergenic | 40.0% |
| !! | AGTGTCGATGTCAACAACAT+TGG | - | chr3.4:78130729-78130748 | MS.gene71287:CDS | 40.0% |
| AAATGGAAGGAGCAGCTTCT+TGG | - | chr3.4:78130705-78130724 | MS.gene71287:CDS | 45.0% | |
| AACATCATGAGCCTCTTACC+AGG | - | chr3.4:78130417-78130436 | MS.gene71287:intron | 45.0% | |
| AATGGAAGGAGCAGCTTCTT+GGG | - | chr3.4:78130706-78130725 | MS.gene71287:CDS | 45.0% | |
| AGAAGATTCACTCGTATGCC+TGG | + | chr3.4:78130438-78130457 | None:intergenic | 45.0% | |
| AGAGTAAACCACAATCCCTG+TGG | + | chr3.4:78131170-78131189 | None:intergenic | 45.0% | |
| ATCTCATGTGTGTAAGGCTC+TGG | + | chr3.4:78131441-78131460 | None:intergenic | 45.0% | |
| ATGGAAAACCACAGGGATTG+TGG | - | chr3.4:78131159-78131178 | MS.gene71287:intron | 45.0% | |
| CCTGAAGATGGAAAACCACA+GGG | - | chr3.4:78131152-78131171 | MS.gene71287:intron | 45.0% | |
| GTCGATGTCAACAACATTGG+AGG | - | chr3.4:78130732-78130751 | MS.gene71287:CDS | 45.0% | |
| GTTCTTCCCATTCCTGAAGA+TGG | - | chr3.4:78131140-78131159 | MS.gene71287:intron | 45.0% | |
| TCCTGAAGATGGAAAACCAC+AGG | - | chr3.4:78131151-78131170 | MS.gene71287:intron | 45.0% | |
| TCTGGCATCTCATGTGTGTA+AGG | + | chr3.4:78131447-78131466 | None:intergenic | 45.0% | |
| TTCTGTCTATGCAACTGAGG+AGG | - | chr3.4:78130454-78130473 | MS.gene71287:intron | 45.0% | |
| !! | ACAAGTGTGTCGATTGTTGC+AGG | - | chr3.4:78130967-78130986 | MS.gene71287:CDS | 45.0% |
| !! | ACCCTCTGGGATATTTGCTA+GGG | - | chr3.4:78131476-78131495 | MS.gene71287:intron | 45.0% |
| !! | CAAGTGTGTCGATTGTTGCA+GGG | - | chr3.4:78130968-78130987 | MS.gene71287:CDS | 45.0% |
| !! | TAATACAATTAAAATTAAAA+GGG | + | chr3.4:78131359-78131378 | None:intergenic | 5.0% |
| !! | TTAATACAATTAAAATTAAA+AGG | + | chr3.4:78131360-78131379 | None:intergenic | 5.0% |
| ACAGGACAAACTAGTGAGGC+TGG | - | chr3.4:78130380-78130399 | MS.gene71287:CDS | 50.0% | |
| CAGAAGAAGTCACACCCTCT+GGG | - | chr3.4:78131463-78131482 | MS.gene71287:CDS | 50.0% | |
| CCCCTAGCAAATATCCCAGA+GGG | + | chr3.4:78131480-78131499 | None:intergenic | 50.0% | |
| TCACTCGTATGCCTGGTAAG+AGG | + | chr3.4:78130431-78130450 | None:intergenic | 50.0% | |
| TCCCCTAGCAAATATCCCAG+AGG | + | chr3.4:78131481-78131500 | None:intergenic | 50.0% | |
| ! | CCCTGTGGTTTTCCATCTTC+AGG | + | chr3.4:78131155-78131174 | None:intergenic | 50.0% |
| ! | GTGTGTAAGGCTCTGGTTGA+GGG | + | chr3.4:78131434-78131453 | None:intergenic | 50.0% |
| ! | TGTGTGTAAGGCTCTGGTTG+AGG | + | chr3.4:78131435-78131454 | None:intergenic | 50.0% |
| !! | CACCCTCTGGGATATTTGCT+AGG | - | chr3.4:78131475-78131494 | MS.gene71287:intron | 50.0% |
| !! | CCCTCTGGGATATTTGCTAG+GGG | - | chr3.4:78131477-78131496 | MS.gene71287:intron | 50.0% |
| CCAGAAGAAGTCACACCCTC+TGG | - | chr3.4:78131462-78131481 | MS.gene71287:CDS | 55.0% | |
| GGACAAACTAGTGAGGCTGG+TGG | - | chr3.4:78130383-78130402 | MS.gene71287:CDS | 55.0% | |
| ! | CCAGAGGGTGTGACTTCTTC+TGG | + | chr3.4:78131465-78131484 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 78130353 | 78131820 | 78130353 | ID=MS.gene71287 |
| chr3.4 | mRNA | 78130353 | 78131820 | 78130353 | ID=MS.gene71287.t1;Parent=MS.gene71287 |
| chr3.4 | exon | 78131623 | 78131820 | 78131623 | ID=MS.gene71287.t1.exon1;Parent=MS.gene71287.t1 |
| chr3.4 | CDS | 78131623 | 78131820 | 78131623 | ID=cds.MS.gene71287.t1;Parent=MS.gene71287.t1 |
| chr3.4 | exon | 78131420 | 78131486 | 78131420 | ID=MS.gene71287.t1.exon2;Parent=MS.gene71287.t1 |
| chr3.4 | CDS | 78131420 | 78131486 | 78131420 | ID=cds.MS.gene71287.t1;Parent=MS.gene71287.t1 |
| chr3.4 | exon | 78130880 | 78131098 | 78130880 | ID=MS.gene71287.t1.exon3;Parent=MS.gene71287.t1 |
| chr3.4 | CDS | 78130880 | 78131098 | 78130880 | ID=cds.MS.gene71287.t1;Parent=MS.gene71287.t1 |
| chr3.4 | exon | 78130652 | 78130776 | 78130652 | ID=MS.gene71287.t1.exon4;Parent=MS.gene71287.t1 |
| chr3.4 | CDS | 78130652 | 78130776 | 78130652 | ID=cds.MS.gene71287.t1;Parent=MS.gene71287.t1 |
| chr3.4 | exon | 78130353 | 78130424 | 78130353 | ID=MS.gene71287.t1.exon5;Parent=MS.gene71287.t1 |
| chr3.4 | CDS | 78130353 | 78130424 | 78130353 | ID=cds.MS.gene71287.t1;Parent=MS.gene71287.t1 |
| Gene Sequence |
| Protein sequence |
