AlfalfaGEDB | MS.gene71830

M. sativa cultivar XinJiangDaYe / MS.gene71830

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene71830.t1	XP_013470174.1	77.3	163	2	2	1	131	1	160	3.00E-62	247.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene71830.t1	A0A072VQY7	77.3	163	2	2	1	131	1	160	2.2e-62	247.7

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049255	MS.gene71830	-0.815054	1.13E-51	-1.69E-46
MS.gene049341	MS.gene71830	-0.837702	4.45E-57	-1.69E-46
MS.gene049821	MS.gene71830	-0.805602	1.23E-49	-1.69E-46
MS.gene049887	MS.gene71830	-0.837034	6.60E-57	-1.69E-46
MS.gene050020	MS.gene71830	-0.821739	3.44E-53	-1.69E-46
MS.gene050194	MS.gene71830	-0.809566	1.78E-50	-1.69E-46
MS.gene050277	MS.gene71830	-0.803468	3.44E-49	-1.69E-46
MS.gene050586	MS.gene71830	-0.818065	2.38E-52	-1.69E-46
MS.gene050807	MS.gene71830	-0.850044	2.19E-60	-1.69E-46
MS.gene050808	MS.gene71830	-0.819188	1.32E-52	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene71830.t1	MTR_1g110760	75.460	163	5	3	1	131	1	160	1.33e-62	189
MS.gene71830.t1	MTR_6g018430	39.623	159	52	4	2	131	25	168	1.61e-26	97.4
MS.gene71830.t1	MTR_8g104210	40.854	164	42	7	7	131	16	163	8.40e-23	87.8
MS.gene71830.t1	MTR_8g104210	40.854	164	42	7	7	131	25	172	1.31e-22	87.8
MS.gene71830.t1	MTR_6g084470	38.608	158	55	5	5	131	21	167	1.26e-19	79.7
MS.gene71830.t1	MTR_1g051170	47.674	86	38	2	39	117	63	148	1.57e-11	58.5
MS.gene71830.t1	MTR_4g087400	50.000	80	36	2	39	117	59	135	2.84e-11	57.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene71830.t1	AT1G68490	52.469	162	36	5	4	131	29	183	3.85e-37	125
MS.gene71830.t1	AT5G16110	47.500	160	48	5	4	131	89	244	1.68e-29	107
MS.gene71830.t1	AT1G13390	43.478	161	49	5	4	131	25	176	3.62e-28	102
MS.gene71830.t1	AT1G13390	43.478	161	49	5	4	131	25	176	3.62e-28	102
MS.gene71830.t1	AT3G02555	45.695	151	41	4	5	131	29	162	2.14e-24	92.0
MS.gene71830.t1	AT3G02555	45.695	151	41	4	5	131	29	162	2.14e-24	92.0

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Find 58 sgRNAs with CRISPR-Local

Find 87 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATTCACCTGAGATGCCAC+CGG	0.634810	1.3:-75507194	None:intergenic
AAGGAAGGGAGGATGTGTTC+GGG	0.568345	1.3:+75507837	MS.gene71830:CDS
AAGGATTCGATTGCCTTGAC+AGG	0.436802	1.3:+75507893	MS.gene71830:CDS
AATCCGGCGGTGAGAGTCGA+AGG	0.545936	1.3:+75507874	MS.gene71830:CDS
AATCCTTCGACTCTCACCGC+CGG	0.616188	1.3:-75507877	None:intergenic
AATCGAGCATCCTGAATTAG+TGG	0.550154	1.3:-75507724	None:intergenic
AATTACGGCTGTCCCTGTCA+AGG	0.629306	1.3:-75507906	None:intergenic
AATTCAGGATGCTCGATTCG+GGG	0.678593	1.3:+75507729	MS.gene71830:CDS
ACCCATGACGACGGTGAGAG+GGG	0.613698	1.3:-75507766	None:intergenic
ACCCGAGCAGATCCTTCCGG+TGG	0.672658	1.3:+75507178	MS.gene71830:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACACAAAGCAATTCAACAAA+AGG	-	chr1.3:75507563-75507582	None:intergenic	30.0%
AATCGAGCATCCTGAATTAG+TGG	-	chr1.3:75507727-75507746	None:intergenic	40.0%
AGTAGCTAACCCACTAATTC+AGG	+	chr1.3:75507714-75507733	MS.gene71830:CDS	40.0%
ATCGAGCATCCTGAATTAGT+GGG	-	chr1.3:75507726-75507745	None:intergenic	40.0%
CTAATTCAGGATGCTCGATT+CGG	+	chr1.3:75507727-75507746	MS.gene71830:CDS	40.0%
GCAGATGAGTTTGAATCACA+CGG	-	chr1.3:75507325-75507344	None:intergenic	40.0%
GCAGGATGATGATTGTGATA+CGG	+	chr1.3:75507627-75507646	MS.gene71830:intron	40.0%
TAATTCAGGATGCTCGATTC+GGG	+	chr1.3:75507728-75507747	MS.gene71830:CDS	40.0%
TTGAATCACACGGTTCAACT+TGG	-	chr1.3:75507315-75507334	None:intergenic	40.0%
TTGGTGAGAATTGTGTCCAA+GGG	-	chr1.3:75507355-75507374	None:intergenic	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.3	gene	75507105	75507951	75507105	ID=MS.gene71830
chr1.3	mRNA	75507105	75507951	75507105	ID=MS.gene71830.t1;Parent=MS.gene71830
chr1.3	exon	75507105	75507208	75507105	ID=MS.gene71830.t1.exon1;Parent=MS.gene71830.t1
chr1.3	CDS	75507105	75507208	75507105	ID=cds.MS.gene71830.t1;Parent=MS.gene71830.t1
chr1.3	exon	75507660	75507951	75507660	ID=MS.gene71830.t1.exon2;Parent=MS.gene71830.t1
chr1.3	CDS	75507660	75507951	75507660	ID=cds.MS.gene71830.t1;Parent=MS.gene71830.t1

Gene Sequence

>MS.gene71830

ATGAACGGAAGAGACTCCGTCGTTTGCCCTAAGCCCCGCCGTGTCGGACTCCTCAACTTCGCCGTCAACGACTACCCGAGCAGATCCTTCCGGTGGCATCTCAGGTGAATTTTAATTTCTCTCTGTTTTTCTTCTTTTCTCTTTTAATTTGCTTTGGTTCAATTTTATTAAACTTTTGCATTTTTCGTTTTTCTTCTTCTGCAGTTGCCAAGTTGAACCGTGTGATTCAAACTCATCTGCGTCAAATCCCTTGGACACAATTCTCACCAAGGTAAATAATTCCTCTATTATTTTATATGAATTTAGGTTAAAATTGGAATAATTTATCTATTATTTTATATGAATTTAGGTTAAATTTTAATAATTGATCTATTTTTAACATTGGTTAACGTTAACTTGTTACTTGTTAAAATTTGAATAGTTGATTGATTACAGTTAAAGCTTGAATTATTGTGCCTTTTGTTGAATTGCTTTGTGTTATGCTTTTTGATTGAATTGTTCTGTGTTGTGCTTTTGTGATTTGCAGGATGATGATTGTGATACGGAACAATCAAGTCCTCCAGTAGCCTCGTCGCCGCCCCCATTTTTCTGTGGGTCTCCGCCGAGCAGAGTAGCTAACCCACTAATTCAGGATGCTCGATTCGGGGATGAGAATTTCTCGCCCCTCTCACCGTCGTCATGGGTGGTGGTTCCTGCCCCATCCGGTCTGCCACCTTCTCCCCCATCTTCTGCAAGGAAGGGAGGATGTGTTCGGGCCAATTTTGGTAACAATCCGGCGGTGAGAGTCGAAGGATTCGATTGCCTTGACAGGGACAGCCGTAATTGCAGCATCCCTGCTCTGGCTTAG

Protein sequence

>MS.gene71830.t1

MNGRDSVVCPKPRRVGLLNFAVNDYPSRSFRWHLSPPVASSPPPFFCGSPPSRVANPLIQDARFGDENFSPLSPSSWVVVPAPSGLPPSPPSSARKGGCVRANFGNNPAVRVEGFDCLDRDSRNCSIPALA