Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72478.t1 | KEH38587.1 | 75.2 | 407 | 61 | 5 | 1 | 368 | 34 | 439 | 4.70E-44 | 188.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72478.t1 | C0LGE0 | 41.2 | 85 | 43 | 2 | 1 | 78 | 36 | 120 | 2.4e-12 | 74.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72478.t1 | A0A072V9U1 | 75.2 | 407 | 61 | 5 | 1 | 368 | 34 | 439 | 3.4e-44 | 188.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050670 | MS.gene72478 | 0.805808 | 1.12E-49 | -1.69E-46 |
| MS.gene05105 | MS.gene72478 | 0.810311 | 1.23E-50 | -1.69E-46 |
| MS.gene051525 | MS.gene72478 | 0.824591 | 7.43E-54 | -1.69E-46 |
| MS.gene052011 | MS.gene72478 | -0.803969 | 2.70E-49 | -1.69E-46 |
| MS.gene052253 | MS.gene72478 | 0.83087 | 2.30E-55 | -1.69E-46 |
| MS.gene052421 | MS.gene72478 | 0.813264 | 2.80E-51 | -1.69E-46 |
| MS.gene053169 | MS.gene72478 | 0.811633 | 6.35E-51 | -1.69E-46 |
| MS.gene053758 | MS.gene72478 | 0.809094 | 2.24E-50 | -1.69E-46 |
| MS.gene053813 | MS.gene72478 | 0.81521 | 1.04E-51 | -1.69E-46 |
| MS.gene053873 | MS.gene72478 | 0.812531 | 4.05E-51 | -1.69E-46 |
| MS.gene054010 | MS.gene72478 | 0.817677 | 2.91E-52 | -1.69E-46 |
| MS.gene054011 | MS.gene72478 | 0.813697 | 2.25E-51 | -1.69E-46 |
| MS.gene054012 | MS.gene72478 | 0.807952 | 3.93E-50 | -1.69E-46 |
| MS.gene054013 | MS.gene72478 | 0.807168 | 5.77E-50 | -1.69E-46 |
| MS.gene054183 | MS.gene72478 | 0.822408 | 2.41E-53 | -1.69E-46 |
| MS.gene054556 | MS.gene72478 | 0.811429 | 7.03E-51 | -1.69E-46 |
| MS.gene055116 | MS.gene72478 | 0.810359 | 1.20E-50 | -1.69E-46 |
| MS.gene055369 | MS.gene72478 | 0.807175 | 5.75E-50 | -1.69E-46 |
| MS.gene055741 | MS.gene72478 | 0.826682 | 2.37E-54 | -1.69E-46 |
| MS.gene055744 | MS.gene72478 | 0.82776 | 1.31E-54 | -1.69E-46 |
| MS.gene055909 | MS.gene72478 | 0.849798 | 2.57E-60 | -1.69E-46 |
| MS.gene055911 | MS.gene72478 | 0.853785 | 1.90E-61 | -1.69E-46 |
| MS.gene056191 | MS.gene72478 | 0.820128 | 8.08E-53 | -1.69E-46 |
| MS.gene056514 | MS.gene72478 | 0.847619 | 1.03E-59 | -1.69E-46 |
| MS.gene057019 | MS.gene72478 | 0.807754 | 4.33E-50 | -1.69E-46 |
| MS.gene057476 | MS.gene72478 | 0.804346 | 2.26E-49 | -1.69E-46 |
| MS.gene057749 | MS.gene72478 | 0.823966 | 1.04E-53 | -1.69E-46 |
| MS.gene057823 | MS.gene72478 | 0.824533 | 7.67E-54 | -1.69E-46 |
| MS.gene057825 | MS.gene72478 | 0.834966 | 2.21E-56 | -1.69E-46 |
| MS.gene057888 | MS.gene72478 | 0.854738 | 1.01E-61 | -1.69E-46 |
| MS.gene058007 | MS.gene72478 | 0.814161 | 1.77E-51 | -1.69E-46 |
| MS.gene058700 | MS.gene72478 | 0.802905 | 4.49E-49 | -1.69E-46 |
| MS.gene05886 | MS.gene72478 | 0.809495 | 1.84E-50 | -1.69E-46 |
| MS.gene058995 | MS.gene72478 | 0.837658 | 4.56E-57 | -1.69E-46 |
| MS.gene059082 | MS.gene72478 | 0.823749 | 1.17E-53 | -1.69E-46 |
| MS.gene059420 | MS.gene72478 | 0.836833 | 7.42E-57 | -1.69E-46 |
| MS.gene059462 | MS.gene72478 | 0.829195 | 5.90E-55 | -1.69E-46 |
| MS.gene059674 | MS.gene72478 | 0.8047 | 1.90E-49 | -1.69E-46 |
| MS.gene059688 | MS.gene72478 | 0.803068 | 4.16E-49 | -1.69E-46 |
| MS.gene059807 | MS.gene72478 | 0.803027 | 4.24E-49 | -1.69E-46 |
| MS.gene059876 | MS.gene72478 | 0.812064 | 5.12E-51 | -1.69E-46 |
| MS.gene060247 | MS.gene72478 | 0.808858 | 2.52E-50 | -1.69E-46 |
| MS.gene060372 | MS.gene72478 | 0.846298 | 2.37E-59 | -1.69E-46 |
| MS.gene061214 | MS.gene72478 | 0.814116 | 1.81E-51 | -1.69E-46 |
| MS.gene061215 | MS.gene72478 | 0.813393 | 2.62E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 80 sgRNAs with CRISPR-Local
Find 161 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAACCAGTTAAACGATTTC+CGG | 0.234444 | 2.3:-21956048 | None:intergenic |
| ACCTGAAAATCTTGGGAATA+TGG | 0.234982 | 2.3:+21957077 | MS.gene72478:CDS |
| GTGCTTACATTGTTCGAATC+TGG | 0.249080 | 2.3:-21956269 | None:intergenic |
| ATAATGAGACTCACAAAATT+TGG | 0.282208 | 2.3:-21956103 | None:intergenic |
| TAGGTATCTTTCCAGAGAAT+TGG | 0.295853 | 2.3:-21956545 | None:intergenic |
| TTAAGTGGGCCGATTCCTTC+TGG | 0.320732 | 2.3:+21956724 | MS.gene72478:CDS |
| TGGACCCGTGCCTTCTGCCT+TGG | 0.327761 | 2.3:+21957962 | MS.gene72478:CDS |
| GAGCCCCATGCTTTAGGAAT+TGG | 0.336175 | 2.3:-21955883 | None:intergenic |
| ATTTCCTGTGGGAGAGTTCC+CGG | 0.338655 | 2.3:-21955679 | None:intergenic |
| GTCATGGAGCCCCATGCTTT+AGG | 0.345629 | 2.3:-21955889 | None:intergenic |
| CTCCCCGGAAATCGTTTAAC+TGG | 0.347020 | 2.3:+21956044 | MS.gene72478:CDS |
| CATGCAGCAACAAACCTAAC+TGG | 0.368854 | 2.3:+21955378 | MS.gene72478:CDS |
| TATTCATTTGTAACCCAGTT+AGG | 0.376998 | 2.3:-21955392 | None:intergenic |
| GGAACGCTACCTGAAAATCT+TGG | 0.377626 | 2.3:+21957069 | MS.gene72478:CDS |
| ACCTGTAACTGCACTGTTGC+TGG | 0.377763 | 2.3:+21955425 | MS.gene72478:CDS |
| GGACCCGTGCCTTCTGCCTT+GGG | 0.381774 | 2.3:+21957963 | MS.gene72478:CDS |
| CATGTATTCCGAACTGTTCA+TGG | 0.384080 | 2.3:-21957637 | None:intergenic |
| AGCTAAATCACTTGGTAAGA+AGG | 0.385261 | 2.3:+21955334 | MS.gene72478:CDS |
| TTAGTTGGCAATCAGATATC+TGG | 0.392468 | 2.3:+21956216 | MS.gene72478:CDS |
| TGCTTACATTGTTCGAATCT+GGG | 0.394758 | 2.3:-21956268 | None:intergenic |
| AGGTATCTTTCCAGAGAATT+GGG | 0.395214 | 2.3:-21956544 | None:intergenic |
| GAACCAGTTAAACGATTTCC+GGG | 0.408047 | 2.3:-21956047 | None:intergenic |
| ACCAGCAACAGTGCAGTTAC+AGG | 0.410409 | 2.3:-21955426 | None:intergenic |
| TGATCAATGCAGCCGTATTA+CGG | 0.414075 | 2.3:+21956518 | MS.gene72478:intron |
| GGAAATATTCCTCCAGAGCT+TGG | 0.414725 | 2.3:+21956237 | MS.gene72478:CDS |
| CCTGAAAATCTTGGGAATAT+GGG | 0.425944 | 2.3:+21957078 | MS.gene72478:CDS |
| ATTACGGACACCCAATTCTC+TGG | 0.429920 | 2.3:+21956534 | MS.gene72478:CDS |
| AATGTCAGATTATTAAGTAT+TGG | 0.433670 | 2.3:-21956912 | None:intergenic |
| AATCACTTGGTAAGAAGGAT+TGG | 0.444651 | 2.3:+21955339 | MS.gene72478:CDS |
| GAAATATATAGGGAGTTAGT+TGG | 0.444990 | 2.3:+21956201 | MS.gene72478:intron |
| GGTTCAATACCAGCGGAGAT+TGG | 0.458443 | 2.3:+21956065 | MS.gene72478:CDS |
| GAAATATTCCTCCAGAGCTT+GGG | 0.459645 | 2.3:+21956238 | MS.gene72478:CDS |
| CTCAGCTTTAACAACATAAG+TGG | 0.460590 | 2.3:+21957591 | MS.gene72478:CDS |
| TGGGTTAGATTCCCAAGCTC+TGG | 0.469449 | 2.3:-21956249 | None:intergenic |
| CTCTCCCACAGGAAATGAAC+AGG | 0.470301 | 2.3:+21955686 | MS.gene72478:CDS |
| AGAATTGGGTGTCCGTAATA+CGG | 0.474568 | 2.3:-21956530 | None:intergenic |
| TTCTCCAGTAAAATTGTTCG+AGG | 0.474570 | 2.3:-21956389 | None:intergenic |
| GAACGCTACCTGAAAATCTT+GGG | 0.475719 | 2.3:+21957070 | MS.gene72478:CDS |
| TTTCCTGTGGGAGAGTTCCC+GGG | 0.487279 | 2.3:-21955678 | None:intergenic |
| TTAACTGGAAACCTTCTCAC+TGG | 0.493239 | 2.3:+21957942 | MS.gene72478:CDS |
| CAGTTAGGTTTGTTGCTGCA+TGG | 0.498363 | 2.3:-21955377 | None:intergenic |
| TTTGAGATTGCAAAATCTCC+CGG | 0.506789 | 2.3:+21955660 | MS.gene72478:CDS |
| CGGTCCAATTCCTAAAGCAT+GGG | 0.517246 | 2.3:+21955879 | MS.gene72478:CDS |
| TTCATGGCAGCATAAATACT+TGG | 0.517692 | 2.3:-21957621 | None:intergenic |
| AATGAAATTCCAGAAGGAAT+CGG | 0.521446 | 2.3:-21956733 | None:intergenic |
| CACTTATGTTGTTAAAGCTG+AGG | 0.522013 | 2.3:-21957590 | None:intergenic |
| TTATGCTGCCATGAACAGTT+CGG | 0.522711 | 2.3:+21957629 | MS.gene72478:CDS |
| TGTCCCAAGGCAGAAGGCAC+GGG | 0.522785 | 2.3:-21957966 | None:intergenic |
| ATCTTGCAATGTAATGAGCT+TGG | 0.523379 | 2.3:-21956428 | None:intergenic |
| TGCAACCTGTTCATTTCCTG+TGG | 0.536961 | 2.3:-21955691 | None:intergenic |
| TATTGTTTCACAGGATTCTG+AGG | 0.544252 | 2.3:+21957031 | MS.gene72478:intron |
| GACAGAACGATACAAGGAAG+TGG | 0.551849 | 2.3:+21956700 | MS.gene72478:intron |
| CATTTCACGAAGATTTGTCA+TGG | 0.553094 | 2.3:-21955905 | None:intergenic |
| ATGTCCCAAGGCAGAAGGCA+CGG | 0.553642 | 2.3:-21957967 | None:intergenic |
| ATACAAGGAAGTGGATTAAG+TGG | 0.557331 | 2.3:+21956709 | MS.gene72478:CDS |
| ACGGTCCAATTCCTAAAGCA+TGG | 0.558701 | 2.3:+21955878 | MS.gene72478:CDS |
| GATATGTTTCCAATCTCCGC+TGG | 0.568165 | 2.3:-21956074 | None:intergenic |
| CATGTCATTGCGTGCCCATG+AGG | 0.574517 | 2.3:-21958345 | None:intergenic |
| AATGAGCTTGGCCAATGTCA+TGG | 0.577177 | 2.3:-21956416 | None:intergenic |
| AATCATAACAGTGGACTCCC+CGG | 0.578459 | 2.3:+21956029 | MS.gene72478:intron |
| CTCTCTCGCAATGACTTGAA+CGG | 0.582358 | 2.3:+21955859 | MS.gene72478:CDS |
| TTGAGATTGCAAAATCTCCC+GGG | 0.585833 | 2.3:+21955661 | MS.gene72478:CDS |
| AAGGCACGGGTCCAGTGAGA+AGG | 0.592116 | 2.3:-21957953 | None:intergenic |
| GAAGTTATAGCTAAATCACT+TGG | 0.595314 | 2.3:+21955326 | MS.gene72478:CDS |
| GTATTATGTCCCAAGGCAGA+AGG | 0.600025 | 2.3:-21957972 | None:intergenic |
| GTTAGATTCCCAAGCTCTGG+AGG | 0.609419 | 2.3:-21956246 | None:intergenic |
| CTGAGGAACTGCAACATCAA+CGG | 0.612319 | 2.3:+21957048 | MS.gene72478:CDS |
| CATGTTGGTATTATGTCCCA+AGG | 0.612936 | 2.3:-21957979 | None:intergenic |
| TGGAGAACTACCCATGACAT+TGG | 0.613558 | 2.3:+21956405 | MS.gene72478:CDS |
| GCAACCTGTTCATTTCCTGT+GGG | 0.622996 | 2.3:-21955690 | None:intergenic |
| TCTCCCGGGAACTCTCCCAC+AGG | 0.624718 | 2.3:+21955675 | MS.gene72478:CDS |
| ATGAGCTTGGCCAATGTCAT+GGG | 0.625002 | 2.3:-21956415 | None:intergenic |
| ATGCAGCAACAAACCTAACT+GGG | 0.626075 | 2.3:+21955379 | MS.gene72478:CDS |
| AGAGAGTTCACTGTAATAGA+CGG | 0.632865 | 2.3:-21955842 | None:intergenic |
| AGATTATTAAGTATTGGCAA+AGG | 0.636299 | 2.3:-21956906 | None:intergenic |
| TACAAGGAAGTGGATTAAGT+GGG | 0.644578 | 2.3:+21956710 | MS.gene72478:CDS |
| TTTAACTGGTTCAATACCAG+CGG | 0.655423 | 2.3:+21956058 | MS.gene72478:CDS |
| GGTCCAATTCCTAAAGCATG+GGG | 0.692947 | 2.3:+21955880 | MS.gene72478:CDS |
| AACCAGTTAAACGATTTCCG+GGG | 0.700120 | 2.3:-21956046 | None:intergenic |
| AGGAGAATTAGTGATCTGAG+TGG | 0.704937 | 2.3:+21956870 | MS.gene72478:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTCTTAAATAAAATGAAA+GGG | - | chr2.3:21958149-21958168 | None:intergenic | 10.0% |
| !! | ATACTTAAAAACAATGAAAA+TGG | - | chr2.3:21957368-21957387 | None:intergenic | 15.0% |
| !! | CAATTCTTAAATAAAATGAA+AGG | - | chr2.3:21958150-21958169 | None:intergenic | 15.0% |
| !! | CTTATTATACATTCTTTATA+AGG | + | chr2.3:21955969-21955988 | MS.gene72478:intron | 15.0% |
| !! | TAAAAATCAAATTGATTAGA+AGG | - | chr2.3:21955499-21955518 | None:intergenic | 15.0% |
| !!! | AAGTTTAACTTGAAATATAT+AGG | + | chr2.3:21956190-21956209 | MS.gene72478:intron | 15.0% |
| !!! | AGTTTAACTTGAAATATATA+GGG | + | chr2.3:21956191-21956210 | MS.gene72478:intron | 15.0% |
| !!! | ATATATTTCAAGTTAAACTT+AGG | - | chr2.3:21956190-21956209 | None:intergenic | 15.0% |
| !!! | TACCTAATTTTATTCAAAAT+TGG | + | chr2.3:21956562-21956581 | MS.gene72478:CDS | 15.0% |
| !!! | TACTTCAATTATTTTTTTAG+AGG | + | chr2.3:21957881-21957900 | MS.gene72478:intron | 15.0% |
| !!! | TTGATTTTTATTTATAACTG+TGG | + | chr2.3:21955509-21955528 | MS.gene72478:intron | 15.0% |
| !!! | TTTTATTTGCAAACTTATTT+AGG | + | chr2.3:21958271-21958290 | MS.gene72478:intron | 15.0% |
| !! | AAGATTCATCAAATAATGAA+TGG | - | chr2.3:21958463-21958482 | None:intergenic | 20.0% |
| !! | AATGTCAGATTATTAAGTAT+TGG | - | chr2.3:21956915-21956934 | None:intergenic | 20.0% |
| !! | AGAAAAAAAAAATTGCTAAG+TGG | - | chr2.3:21956130-21956149 | None:intergenic | 20.0% |
| !! | AGGAAACATAATTAAAATGA+AGG | - | chr2.3:21956824-21956843 | None:intergenic | 20.0% |
| !! | ATAATGAATGGAAAATAGAA+AGG | - | chr2.3:21958451-21958470 | None:intergenic | 20.0% |
| !! | CATAATACTGAAATACATTA+GGG | + | chr2.3:21957226-21957245 | MS.gene72478:intron | 20.0% |
| !! | GAAAAAAAAAATTGCTAAGT+GGG | - | chr2.3:21956129-21956148 | None:intergenic | 20.0% |
| !! | TAAGTATCTTATGTTAAACT+TGG | + | chr2.3:21957381-21957400 | MS.gene72478:intron | 20.0% |
| !! | TCAAAACATGTAAAAGAAAA+TGG | - | chr2.3:21957334-21957353 | None:intergenic | 20.0% |
| !! | TTAGAAAGGTAAATAAGAAA+CGG | - | chr2.3:21958085-21958104 | None:intergenic | 20.0% |
| !! | TTAGTTTATTCTTTAACCTT+TGG | + | chr2.3:21957433-21957452 | MS.gene72478:intron | 20.0% |
| !!! | GTCCAATTTTGAATAAAATT+AGG | - | chr2.3:21956567-21956586 | None:intergenic | 20.0% |
| !!! | GTTTATGTTTAACTTTCTTT+CGG | + | chr2.3:21955618-21955637 | MS.gene72478:intron | 20.0% |
| !!! | TCTTTAACTTATTATATTCC+AGG | + | chr2.3:21957498-21957517 | MS.gene72478:intron | 20.0% |
| ! | AAAAGTTGAAACTAGATTGT+AGG | - | chr2.3:21957740-21957759 | None:intergenic | 25.0% |
| ! | AAACAAGAAACATAGAAAGT+AGG | - | chr2.3:21957256-21957275 | None:intergenic | 25.0% |
| ! | AACTTATTATATTCCAGGAA+TGG | + | chr2.3:21957503-21957522 | MS.gene72478:intron | 25.0% |
| ! | AATAAATGTCAACTCATAGA+AGG | + | chr2.3:21957830-21957849 | MS.gene72478:intron | 25.0% |
| ! | AGGTTCTACTAGAATTAATT+TGG | - | chr2.3:21956170-21956189 | None:intergenic | 25.0% |
| ! | ATAAATGTCAACTCATAGAA+GGG | + | chr2.3:21957831-21957850 | MS.gene72478:intron | 25.0% |
| ! | ATAATGAGACTCACAAAATT+TGG | - | chr2.3:21956106-21956125 | None:intergenic | 25.0% |
| ! | ATGTTTCTTAATCATAACAG+TGG | + | chr2.3:21956020-21956039 | MS.gene72478:intron | 25.0% |
| ! | GCATAATACTGAAATACATT+AGG | + | chr2.3:21957225-21957244 | MS.gene72478:intron | 25.0% |
| ! | TACAAAAACAAAGATACCAA+AGG | - | chr2.3:21957452-21957471 | None:intergenic | 25.0% |
| ! | TACAAAAGCAATTAGATATG+AGG | - | chr2.3:21956636-21956655 | None:intergenic | 25.0% |
| ! | TATTCTATATACTGAAGCAA+TGG | + | chr2.3:21956787-21956806 | MS.gene72478:intron | 25.0% |
| ! | TCAAAATGCATGATTATCTT+CGG | + | chr2.3:21957168-21957187 | MS.gene72478:intron | 25.0% |
| ! | TTGATTCAAATGTGATATTC+AGG | + | chr2.3:21956850-21956869 | MS.gene72478:intron | 25.0% |
| !! | TTCTTATTTACCTTTCTAAG+TGG | + | chr2.3:21958086-21958105 | MS.gene72478:intron | 25.0% |
| !! | TTTTGACGTAGATTTTTAAC+TGG | + | chr2.3:21957927-21957946 | MS.gene72478:intron | 25.0% |
| !!! | AATGTCTACTTTTATTTCCA+TGG | + | chr2.3:21956315-21956334 | MS.gene72478:intron | 25.0% |
| !!! | AGATTATTAAGTATTGGCAA+AGG | - | chr2.3:21956909-21956928 | None:intergenic | 25.0% |
| !!! | ATATTTTTAGTGACATCTGT+TGG | + | chr2.3:21957704-21957723 | MS.gene72478:intron | 25.0% |
| !!! | CAACTTTTTCGTAAATCTAT+CGG | + | chr2.3:21955554-21955573 | MS.gene72478:intron | 25.0% |
| AAGAAAGATAACTCACATGT+TGG | - | chr2.3:21957997-21958016 | None:intergenic | 30.0% | |
| AATAAAAGAACACAGATGCA+AGG | - | chr2.3:21958258-21958277 | None:intergenic | 30.0% | |
| AATGAAATTCCAGAAGGAAT+CGG | - | chr2.3:21956736-21956755 | None:intergenic | 30.0% | |
| AATGATAAGTCCACTTAGAA+AGG | - | chr2.3:21958099-21958118 | None:intergenic | 30.0% | |
| ATCTTTAATCACTGTCTTGA+GGG | - | chr2.3:21957858-21957877 | None:intergenic | 30.0% | |
| ATTAGAAAATCTGGTGTATC+AGG | - | chr2.3:21958302-21958321 | None:intergenic | 30.0% | |
| CACATTTGAATCAAAAGCTA+AGG | - | chr2.3:21956844-21956863 | None:intergenic | 30.0% | |
| CTCAAAAATGAAATTCCAGA+AGG | - | chr2.3:21956742-21956761 | None:intergenic | 30.0% | |
| CTGTGACAAATTAGAAAATC+TGG | - | chr2.3:21958311-21958330 | None:intergenic | 30.0% | |
| GAAATATATAGGGAGTTAGT+TGG | + | chr2.3:21956201-21956220 | MS.gene72478:intron | 30.0% | |
| GAAGTTATAGCTAAATCACT+TGG | + | chr2.3:21955326-21955345 | MS.gene72478:CDS | 30.0% | |
| TAAATGATGATTCAAAGCCA+TGG | - | chr2.3:21956335-21956354 | None:intergenic | 30.0% | |
| TATCTTTAATCACTGTCTTG+AGG | - | chr2.3:21957859-21957878 | None:intergenic | 30.0% | |
| TATTCATTTGTAACCCAGTT+AGG | - | chr2.3:21955395-21955414 | None:intergenic | 30.0% | |
| TGTCTATCTTATTGTTTCAC+AGG | + | chr2.3:21957022-21957041 | MS.gene72478:intron | 30.0% | |
| TGTTTGATATCTTCTATCAC+AGG | + | chr2.3:21955782-21955801 | MS.gene72478:intron | 30.0% | |
| ! | TTTTCCTCGAACAATTTTAC+TGG | + | chr2.3:21956385-21956404 | MS.gene72478:CDS | 30.0% |
| !! | AATTTTGACAGAACGATACA+AGG | + | chr2.3:21956694-21956713 | MS.gene72478:intron | 30.0% |
| !! | CAGATTTTCTAATTTGTCAC+AGG | + | chr2.3:21958309-21958328 | MS.gene72478:intron | 30.0% |
| !! | TTCAACTTTTAGTCTGAAGT+AGG | + | chr2.3:21957750-21957769 | MS.gene72478:intron | 30.0% |
| AATCACTTGGTAAGAAGGAT+TGG | + | chr2.3:21955339-21955358 | MS.gene72478:CDS | 35.0% | |
| ACATGTAAAAGAAAATGGCG+AGG | - | chr2.3:21957329-21957348 | None:intergenic | 35.0% | |
| ACCTGAAAATCTTGGGAATA+TGG | + | chr2.3:21957077-21957096 | MS.gene72478:CDS | 35.0% | |
| AGAGAGTTCACTGTAATAGA+CGG | - | chr2.3:21955845-21955864 | None:intergenic | 35.0% | |
| AGCTAAATCACTTGGTAAGA+AGG | + | chr2.3:21955334-21955353 | MS.gene72478:CDS | 35.0% | |
| AGGTATCTTTCCAGAGAATT+GGG | - | chr2.3:21956547-21956566 | None:intergenic | 35.0% | |
| ATCTTGCAATGTAATGAGCT+TGG | - | chr2.3:21956431-21956450 | None:intergenic | 35.0% | |
| CACTTATGTTGTTAAAGCTG+AGG | - | chr2.3:21957593-21957612 | None:intergenic | 35.0% | |
| CATTTCACGAAGATTTGTCA+TGG | - | chr2.3:21955908-21955927 | None:intergenic | 35.0% | |
| CCTGAAAATCTTGGGAATAT+GGG | + | chr2.3:21957078-21957097 | MS.gene72478:CDS | 35.0% | |
| GAAAATGGCGAGGATAATAT+AGG | - | chr2.3:21957319-21957338 | None:intergenic | 35.0% | |
| TACTACTTGCATGATTCCTT+CGG | + | chr2.3:21958018-21958037 | MS.gene72478:intron | 35.0% | |
| TAGGTATCTTTCCAGAGAAT+TGG | - | chr2.3:21956548-21956567 | None:intergenic | 35.0% | |
| TATTGTTTCACAGGATTCTG+AGG | + | chr2.3:21957031-21957050 | MS.gene72478:intron | 35.0% | |
| TGAACCAGTTAAACGATTTC+CGG | - | chr2.3:21956051-21956070 | None:intergenic | 35.0% | |
| TGCTTACATTGTTCGAATCT+GGG | - | chr2.3:21956271-21956290 | None:intergenic | 35.0% | |
| TTAGTTGGCAATCAGATATC+TGG | + | chr2.3:21956216-21956235 | MS.gene72478:CDS | 35.0% | |
| TTCATGGCAGCATAAATACT+TGG | - | chr2.3:21957624-21957643 | None:intergenic | 35.0% | |
| TTCTCCAGTAAAATTGTTCG+AGG | - | chr2.3:21956392-21956411 | None:intergenic | 35.0% | |
| TTTGTCGTAAAAACCATTCC+TGG | - | chr2.3:21957519-21957538 | None:intergenic | 35.0% | |
| ! | CTCAGCTTTAACAACATAAG+TGG | + | chr2.3:21957591-21957610 | MS.gene72478:CDS | 35.0% |
| ! | TTTAACTGGTTCAATACCAG+CGG | + | chr2.3:21956058-21956077 | MS.gene72478:CDS | 35.0% |
| ! | TTTGAGATTGCAAAATCTCC+CGG | + | chr2.3:21955660-21955679 | MS.gene72478:CDS | 35.0% |
| !! | ATACAAGGAAGTGGATTAAG+TGG | + | chr2.3:21956709-21956728 | MS.gene72478:CDS | 35.0% |
| !! | GAACTTGTTTTCTACCTCAT+GGG | + | chr2.3:21958331-21958350 | MS.gene72478:CDS | 35.0% |
| !! | TACAAGGAAGTGGATTAAGT+GGG | + | chr2.3:21956710-21956729 | MS.gene72478:CDS | 35.0% |
| AACCAGTTAAACGATTTCCG+GGG | - | chr2.3:21956049-21956068 | None:intergenic | 40.0% | |
| AGAAAAAAGAGCAGCTAGAG+AGG | + | chr2.3:21956982-21957001 | MS.gene72478:intron | 40.0% | |
| AGAATTGGGTGTCCGTAATA+CGG | - | chr2.3:21956533-21956552 | None:intergenic | 40.0% | |
| AGGAGAATTAGTGATCTGAG+TGG | + | chr2.3:21956870-21956889 | MS.gene72478:intron | 40.0% | |
| ATGCAGCAACAAACCTAACT+GGG | + | chr2.3:21955379-21955398 | MS.gene72478:CDS | 40.0% | |
| ATGCCAAACGAAATATAGCG+AGG | - | chr2.3:21957129-21957148 | None:intergenic | 40.0% | |
| CACGCAATGACATGTAAGTT+TGG | + | chr2.3:21958354-21958373 | MS.gene72478:intron | 40.0% | |
| CATGTATTCCGAACTGTTCA+TGG | - | chr2.3:21957640-21957659 | None:intergenic | 40.0% | |
| CATGTTGGTATTATGTCCCA+AGG | - | chr2.3:21957982-21958001 | None:intergenic | 40.0% | |
| CTTCCTCGCTATATTTCGTT+TGG | + | chr2.3:21957123-21957142 | MS.gene72478:intron | 40.0% | |
| GAAATATTCCTCCAGAGCTT+GGG | + | chr2.3:21956238-21956257 | MS.gene72478:CDS | 40.0% | |
| GAACCAGTTAAACGATTTCC+GGG | - | chr2.3:21956050-21956069 | None:intergenic | 40.0% | |
| GAACGCTACCTGAAAATCTT+GGG | + | chr2.3:21957070-21957089 | MS.gene72478:CDS | 40.0% | |
| GTGCTTACATTGTTCGAATC+TGG | - | chr2.3:21956272-21956291 | None:intergenic | 40.0% | |
| TGATCAATGCAGCCGTATTA+CGG | + | chr2.3:21956518-21956537 | MS.gene72478:intron | 40.0% | |
| TTAACTGGAAACCTTCTCAC+TGG | + | chr2.3:21957942-21957961 | MS.gene72478:CDS | 40.0% | |
| TTATGCTGCCATGAACAGTT+CGG | + | chr2.3:21957629-21957648 | MS.gene72478:CDS | 40.0% | |
| TTGAGATTGCAAAATCTCCC+GGG | + | chr2.3:21955661-21955680 | MS.gene72478:CDS | 40.0% | |
| ! | CCCATATTCCCAAGATTTTC+AGG | - | chr2.3:21957081-21957100 | None:intergenic | 40.0% |
| !! | GGAACTTGTTTTCTACCTCA+TGG | + | chr2.3:21958330-21958349 | MS.gene72478:intron | 40.0% |
| AATGAGCTTGGCCAATGTCA+TGG | - | chr2.3:21956419-21956438 | None:intergenic | 45.0% | |
| ACGGTCCAATTCCTAAAGCA+TGG | + | chr2.3:21955878-21955897 | MS.gene72478:CDS | 45.0% | |
| ATGAGCTTGGCCAATGTCAT+GGG | - | chr2.3:21956418-21956437 | None:intergenic | 45.0% | |
| ATTACGGACACCCAATTCTC+TGG | + | chr2.3:21956534-21956553 | MS.gene72478:CDS | 45.0% | |
| CATGCAGCAACAAACCTAAC+TGG | + | chr2.3:21955378-21955397 | MS.gene72478:CDS | 45.0% | |
| CGGTCCAATTCCTAAAGCAT+GGG | + | chr2.3:21955879-21955898 | MS.gene72478:CDS | 45.0% | |
| CTCTCTCGCAATGACTTGAA+CGG | + | chr2.3:21955859-21955878 | MS.gene72478:CDS | 45.0% | |
| CTGAGGAACTGCAACATCAA+CGG | + | chr2.3:21957048-21957067 | MS.gene72478:CDS | 45.0% | |
| GAAGTTCACCATTCAACCGA+AGG | - | chr2.3:21958037-21958056 | None:intergenic | 45.0% | |
| GACAGAACGATACAAGGAAG+TGG | + | chr2.3:21956700-21956719 | MS.gene72478:intron | 45.0% | |
| GATATGTTTCCAATCTCCGC+TGG | - | chr2.3:21956077-21956096 | None:intergenic | 45.0% | |
| GCAACCTGTTCATTTCCTGT+GGG | - | chr2.3:21955693-21955712 | None:intergenic | 45.0% | |
| GCATGATTCCTTCGGTTGAA+TGG | + | chr2.3:21958026-21958045 | MS.gene72478:intron | 45.0% | |
| GGAAATATTCCTCCAGAGCT+TGG | + | chr2.3:21956237-21956256 | MS.gene72478:CDS | 45.0% | |
| GGAACGCTACCTGAAAATCT+TGG | + | chr2.3:21957069-21957088 | MS.gene72478:CDS | 45.0% | |
| GGTCCAATTCCTAAAGCATG+GGG | + | chr2.3:21955880-21955899 | MS.gene72478:CDS | 45.0% | |
| GTATTATGTCCCAAGGCAGA+AGG | - | chr2.3:21957975-21957994 | None:intergenic | 45.0% | |
| TGCAACCTGTTCATTTCCTG+TGG | - | chr2.3:21955694-21955713 | None:intergenic | 45.0% | |
| TGGAGAACTACCCATGACAT+TGG | + | chr2.3:21956405-21956424 | MS.gene72478:CDS | 45.0% | |
| ! | AATCATAACAGTGGACTCCC+CGG | + | chr2.3:21956029-21956048 | MS.gene72478:intron | 45.0% |
| !! | CAGTTAGGTTTGTTGCTGCA+TGG | - | chr2.3:21955380-21955399 | None:intergenic | 45.0% |
| !! | ATAAAAATTATATCAAAATT+TGG | - | chr2.3:21956490-21956509 | None:intergenic | 5.0% |
| !! | TATATAATTTAAAAACAAAA+CGG | - | chr2.3:21956358-21956377 | None:intergenic | 5.0% |
| !!! | TTTGTTTTTAAATTATATAT+AGG | + | chr2.3:21956359-21956378 | MS.gene72478:intron | 5.0% |
| AAACATGCTGTTCCTCTGCG+AGG | - | chr2.3:21958524-21958543 | None:intergenic | 50.0% | |
| ACCAGCAACAGTGCAGTTAC+AGG | - | chr2.3:21955429-21955448 | None:intergenic | 50.0% | |
| ACCTGTAACTGCACTGTTGC+TGG | + | chr2.3:21955425-21955444 | MS.gene72478:CDS | 50.0% | |
| ATTTCCTGTGGGAGAGTTCC+CGG | - | chr2.3:21955682-21955701 | None:intergenic | 50.0% | |
| CTCCCCGGAAATCGTTTAAC+TGG | + | chr2.3:21956044-21956063 | MS.gene72478:CDS | 50.0% | |
| CTCTCCCACAGGAAATGAAC+AGG | + | chr2.3:21955686-21955705 | MS.gene72478:CDS | 50.0% | |
| GGTTCAATACCAGCGGAGAT+TGG | + | chr2.3:21956065-21956084 | MS.gene72478:CDS | 50.0% | |
| ! | ACGGCTGCATTGATCAGAGA+GGG | - | chr2.3:21956514-21956533 | None:intergenic | 50.0% |
| ! | GTTAGATTCCCAAGCTCTGG+AGG | - | chr2.3:21956249-21956268 | None:intergenic | 50.0% |
| ! | TACGGCTGCATTGATCAGAG+AGG | - | chr2.3:21956515-21956534 | None:intergenic | 50.0% |
| ! | TGGGTTAGATTCCCAAGCTC+TGG | - | chr2.3:21956252-21956271 | None:intergenic | 50.0% |
| ! | TTAAGTGGGCCGATTCCTTC+TGG | + | chr2.3:21956724-21956743 | MS.gene72478:CDS | 50.0% |
| !! | GAGCCCCATGCTTTAGGAAT+TGG | - | chr2.3:21955886-21955905 | None:intergenic | 50.0% |
| ATGCTGTTCCTCTGCGAGGA+TGG | - | chr2.3:21958520-21958539 | None:intergenic | 55.0% | |
| ATGTCCCAAGGCAGAAGGCA+CGG | - | chr2.3:21957970-21957989 | None:intergenic | 55.0% | |
| CATGTCATTGCGTGCCCATG+AGG | - | chr2.3:21958348-21958367 | None:intergenic | 55.0% | |
| GTCATGGAGCCCCATGCTTT+AGG | - | chr2.3:21955892-21955911 | None:intergenic | 55.0% | |
| TACTCCTTCCATCCTCGCAG+AGG | + | chr2.3:21958509-21958528 | MS.gene72478:intron | 55.0% | |
| TGTTCCTCTGCGAGGATGGA+AGG | - | chr2.3:21958516-21958535 | None:intergenic | 55.0% | |
| TTTCCTGTGGGAGAGTTCCC+GGG | - | chr2.3:21955681-21955700 | None:intergenic | 55.0% | |
| AAGGCACGGGTCCAGTGAGA+AGG | - | chr2.3:21957956-21957975 | None:intergenic | 60.0% | |
| ! | TGTCCCAAGGCAGAAGGCAC+GGG | - | chr2.3:21957969-21957988 | None:intergenic | 60.0% |
| GGACCCGTGCCTTCTGCCTT+GGG | + | chr2.3:21957963-21957982 | MS.gene72478:CDS | 65.0% | |
| TCTCCCGGGAACTCTCCCAC+AGG | + | chr2.3:21955675-21955694 | MS.gene72478:CDS | 65.0% | |
| TGGACCCGTGCCTTCTGCCT+TGG | + | chr2.3:21957962-21957981 | MS.gene72478:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.3 | gene | 21955315 | 21958563 | 21955315 | ID=MS.gene72478 |
| chr2.3 | mRNA | 21955315 | 21958563 | 21955315 | ID=MS.gene72478.t1;Parent=MS.gene72478 |
| chr2.3 | exon | 21955315 | 21955474 | 21955315 | ID=MS.gene72478.t1.exon1;Parent=MS.gene72478.t1 |
| chr2.3 | CDS | 21955315 | 21955474 | 21955315 | ID=cds.MS.gene72478.t1;Parent=MS.gene72478.t1 |
| chr2.3 | exon | 21955657 | 21955707 | 21955657 | ID=MS.gene72478.t1.exon2;Parent=MS.gene72478.t1 |
| chr2.3 | CDS | 21955657 | 21955707 | 21955657 | ID=cds.MS.gene72478.t1;Parent=MS.gene72478.t1 |
| chr2.3 | exon | 21955804 | 21955926 | 21955804 | ID=MS.gene72478.t1.exon3;Parent=MS.gene72478.t1 |
| chr2.3 | CDS | 21955804 | 21955926 | 21955804 | ID=cds.MS.gene72478.t1;Parent=MS.gene72478.t1 |
| chr2.3 | exon | 21956040 | 21956111 | 21956040 | ID=MS.gene72478.t1.exon4;Parent=MS.gene72478.t1 |
| chr2.3 | CDS | 21956040 | 21956111 | 21956040 | ID=cds.MS.gene72478.t1;Parent=MS.gene72478.t1 |
| chr2.3 | exon | 21956212 | 21956283 | 21956212 | ID=MS.gene72478.t1.exon5;Parent=MS.gene72478.t1 |
| chr2.3 | CDS | 21956212 | 21956283 | 21956212 | ID=cds.MS.gene72478.t1;Parent=MS.gene72478.t1 |
| chr2.3 | exon | 21956381 | 21956452 | 21956381 | ID=MS.gene72478.t1.exon6;Parent=MS.gene72478.t1 |
| chr2.3 | CDS | 21956381 | 21956452 | 21956381 | ID=cds.MS.gene72478.t1;Parent=MS.gene72478.t1 |
| chr2.3 | exon | 21956530 | 21956601 | 21956530 | ID=MS.gene72478.t1.exon7;Parent=MS.gene72478.t1 |
| chr2.3 | CDS | 21956530 | 21956601 | 21956530 | ID=cds.MS.gene72478.t1;Parent=MS.gene72478.t1 |
| chr2.3 | exon | 21956705 | 21956776 | 21956705 | ID=MS.gene72478.t1.exon8;Parent=MS.gene72478.t1 |
| chr2.3 | CDS | 21956705 | 21956776 | 21956705 | ID=cds.MS.gene72478.t1;Parent=MS.gene72478.t1 |
| chr2.3 | exon | 21956872 | 21956946 | 21956872 | ID=MS.gene72478.t1.exon9;Parent=MS.gene72478.t1 |
| chr2.3 | CDS | 21956872 | 21956946 | 21956872 | ID=cds.MS.gene72478.t1;Parent=MS.gene72478.t1 |
| chr2.3 | exon | 21957044 | 21957115 | 21957044 | ID=MS.gene72478.t1.exon10;Parent=MS.gene72478.t1 |
| chr2.3 | CDS | 21957044 | 21957115 | 21957044 | ID=cds.MS.gene72478.t1;Parent=MS.gene72478.t1 |
| chr2.3 | exon | 21957587 | 21957658 | 21957587 | ID=MS.gene72478.t1.exon11;Parent=MS.gene72478.t1 |
| chr2.3 | CDS | 21957587 | 21957658 | 21957587 | ID=cds.MS.gene72478.t1;Parent=MS.gene72478.t1 |
| chr2.3 | exon | 21957938 | 21958000 | 21957938 | ID=MS.gene72478.t1.exon12;Parent=MS.gene72478.t1 |
| chr2.3 | CDS | 21957938 | 21958000 | 21957938 | ID=cds.MS.gene72478.t1;Parent=MS.gene72478.t1 |
| chr2.3 | exon | 21958187 | 21958246 | 21958187 | ID=MS.gene72478.t1.exon13;Parent=MS.gene72478.t1 |
| chr2.3 | CDS | 21958187 | 21958246 | 21958187 | ID=cds.MS.gene72478.t1;Parent=MS.gene72478.t1 |
| chr2.3 | exon | 21958331 | 21958366 | 21958331 | ID=MS.gene72478.t1.exon14;Parent=MS.gene72478.t1 |
| chr2.3 | CDS | 21958331 | 21958366 | 21958331 | ID=cds.MS.gene72478.t1;Parent=MS.gene72478.t1 |
| chr2.3 | exon | 21958529 | 21958563 | 21958529 | ID=MS.gene72478.t1.exon15;Parent=MS.gene72478.t1 |
| chr2.3 | CDS | 21958529 | 21958563 | 21958529 | ID=cds.MS.gene72478.t1;Parent=MS.gene72478.t1 |
| Gene Sequence |
| Protein sequence |
