Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72487.t1 | XP_003605559.2 | 99.1 | 348 | 3 | 0 | 1 | 348 | 1 | 348 | 1.10E-207 | 732.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72487.t1 | Q9FHM9 | 75.4 | 334 | 80 | 1 | 14 | 347 | 6 | 337 | 1.0e-153 | 544.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72487.t1 | G7JP91 | 99.1 | 348 | 3 | 0 | 1 | 348 | 1 | 348 | 7.8e-208 | 732.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049418 | MS.gene72487 | 0.869225 | 3.63E-66 | -1.69E-46 |
| MS.gene049711 | MS.gene72487 | 0.801214 | 1.00E-48 | -1.69E-46 |
| MS.gene049807 | MS.gene72487 | 0.824234 | 9.01E-54 | -1.69E-46 |
| MS.gene050297 | MS.gene72487 | 0.804434 | 2.16E-49 | -1.69E-46 |
| MS.gene051018 | MS.gene72487 | 0.818954 | 1.50E-52 | -1.69E-46 |
| MS.gene051067 | MS.gene72487 | 0.804677 | 1.93E-49 | -1.69E-46 |
| MS.gene051478 | MS.gene72487 | 0.846551 | 2.02E-59 | -1.69E-46 |
| MS.gene051538 | MS.gene72487 | 0.802961 | 4.38E-49 | -1.69E-46 |
| MS.gene051648 | MS.gene72487 | 0.886341 | 3.72E-72 | -1.69E-46 |
| MS.gene051660 | MS.gene72487 | 0.815004 | 1.15E-51 | -1.69E-46 |
| MS.gene051664 | MS.gene72487 | 0.820446 | 6.83E-53 | -1.69E-46 |
| MS.gene052150 | MS.gene72487 | 0.840106 | 1.06E-57 | -1.69E-46 |
| MS.gene052151 | MS.gene72487 | 0.847154 | 1.38E-59 | -1.69E-46 |
| MS.gene052155 | MS.gene72487 | -0.812479 | 4.15E-51 | -1.69E-46 |
| MS.gene052628 | MS.gene72487 | 0.802272 | 6.07E-49 | -1.69E-46 |
| MS.gene053122 | MS.gene72487 | 0.82331 | 1.48E-53 | -1.69E-46 |
| MS.gene053144 | MS.gene72487 | 0.838928 | 2.15E-57 | -1.69E-46 |
| MS.gene053536 | MS.gene72487 | 0.883472 | 4.36E-71 | -1.69E-46 |
| MS.gene053538 | MS.gene72487 | 0.877332 | 6.84E-69 | -1.69E-46 |
| MS.gene053945 | MS.gene72487 | 0.812602 | 3.90E-51 | -1.69E-46 |
| MS.gene054584 | MS.gene72487 | 0.831331 | 1.77E-55 | -1.69E-46 |
| MS.gene054999 | MS.gene72487 | 0.827672 | 1.37E-54 | -1.69E-46 |
| MS.gene055537 | MS.gene72487 | 0.848341 | 6.52E-60 | -1.69E-46 |
| MS.gene055580 | MS.gene72487 | -0.820687 | 6.01E-53 | -1.69E-46 |
| MS.gene055764 | MS.gene72487 | 0.831749 | 1.40E-55 | -1.69E-46 |
| MS.gene056169 | MS.gene72487 | 0.81294 | 3.29E-51 | -1.69E-46 |
| MS.gene056228 | MS.gene72487 | 0.816832 | 4.51E-52 | -1.69E-46 |
| MS.gene056704 | MS.gene72487 | 0.819046 | 1.43E-52 | -1.69E-46 |
| MS.gene057082 | MS.gene72487 | 0.83645 | 9.29E-57 | -1.69E-46 |
| MS.gene058492 | MS.gene72487 | 0.822081 | 2.87E-53 | -1.69E-46 |
| MS.gene05894 | MS.gene72487 | 0.860924 | 1.47E-63 | -1.69E-46 |
| MS.gene059164 | MS.gene72487 | 0.801193 | 1.01E-48 | -1.69E-46 |
| MS.gene059424 | MS.gene72487 | 0.865959 | 4.04E-65 | -1.69E-46 |
| MS.gene059425 | MS.gene72487 | 0.813059 | 3.10E-51 | -1.69E-46 |
| MS.gene060519 | MS.gene72487 | 0.821701 | 3.51E-53 | -1.69E-46 |
| MS.gene06057 | MS.gene72487 | 0.815774 | 7.78E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72487.t1 | MTR_4g033790 | 99.138 | 348 | 3 | 0 | 1 | 348 | 1 | 348 | 0.0 | 717 |
| MS.gene72487.t1 | MTR_1g076470 | 63.123 | 301 | 106 | 3 | 50 | 347 | 49 | 347 | 1.02e-129 | 375 |
| MS.gene72487.t1 | MTR_3g074890 | 37.884 | 293 | 163 | 8 | 52 | 341 | 25 | 301 | 1.92e-55 | 183 |
| MS.gene72487.t1 | MTR_5g064345 | 36.149 | 296 | 167 | 8 | 45 | 329 | 16 | 300 | 4.02e-55 | 183 |
| MS.gene72487.t1 | MTR_5g064360 | 36.332 | 289 | 162 | 8 | 52 | 329 | 24 | 301 | 5.51e-55 | 182 |
| MS.gene72487.t1 | MTR_3g074860 | 37.037 | 297 | 160 | 9 | 52 | 341 | 25 | 301 | 1.03e-54 | 181 |
| MS.gene72487.t1 | MTR_5g464340 | 35.811 | 296 | 168 | 7 | 45 | 329 | 16 | 300 | 3.87e-54 | 180 |
| MS.gene72487.t1 | MTR_5g064340 | 35.811 | 296 | 168 | 7 | 45 | 329 | 16 | 300 | 3.87e-54 | 180 |
| MS.gene72487.t1 | MTR_4g094240 | 36.691 | 278 | 158 | 7 | 65 | 340 | 35 | 296 | 2.15e-50 | 170 |
| MS.gene72487.t1 | MTR_2g009070 | 35.816 | 282 | 157 | 8 | 65 | 340 | 37 | 300 | 3.52e-48 | 164 |
| MS.gene72487.t1 | MTR_3g074830 | 38.078 | 281 | 150 | 9 | 65 | 333 | 66 | 334 | 5.01e-45 | 157 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72487.t1 | AT5G51550 | 75.449 | 334 | 80 | 1 | 14 | 347 | 6 | 337 | 3.08e-180 | 503 |
| MS.gene72487.t1 | AT2G17230 | 57.692 | 312 | 126 | 4 | 40 | 347 | 54 | 363 | 1.27e-120 | 352 |
| MS.gene72487.t1 | AT2G35150 | 54.902 | 306 | 127 | 5 | 50 | 347 | 21 | 323 | 3.18e-106 | 314 |
| MS.gene72487.t1 | AT4G08950 | 36.519 | 293 | 164 | 8 | 60 | 341 | 30 | 311 | 8.06e-50 | 169 |
| MS.gene72487.t1 | AT1G35140 | 32.770 | 296 | 179 | 8 | 55 | 341 | 22 | 306 | 1.88e-47 | 163 |
| MS.gene72487.t1 | AT5G64260 | 35.915 | 284 | 159 | 8 | 65 | 340 | 33 | 301 | 9.75e-47 | 161 |
| MS.gene72487.t1 | AT5G09440 | 35.581 | 267 | 141 | 9 | 77 | 340 | 36 | 274 | 5.74e-37 | 134 |
| MS.gene72487.t1 | AT3G02970 | 25.249 | 301 | 183 | 10 | 77 | 343 | 39 | 331 | 4.73e-20 | 90.1 |
Find 99 sgRNAs with CRISPR-Local
Find 120 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATTTGTGTGAGGGTATTTA+TGG | 0.202112 | 4.2:-69356864 | MS.gene72487:CDS |
| ATCTTATACGGGACAGGTTT+TGG | 0.231495 | 4.2:-69356826 | MS.gene72487:CDS |
| ATACAATTTGGTACGGTAAT+TGG | 0.234330 | 4.2:-69357496 | MS.gene72487:CDS |
| TCATAACCGTTCATACAATT+TGG | 0.244821 | 4.2:-69357508 | MS.gene72487:CDS |
| AGATGAACCTTCGTATTTCT+TGG | 0.248923 | 4.2:+69357577 | None:intergenic |
| AAACCACTTCTAGGGTTTAT+AGG | 0.259480 | 4.2:+69357221 | None:intergenic |
| AAGAGATATAAACCACTTCT+AGG | 0.279278 | 4.2:+69357212 | None:intergenic |
| TTTACATTTCCTTCACTTGT+TGG | 0.297918 | 4.2:-69357128 | MS.gene72487:CDS |
| ACACCTCATCCTTCAGTTTC+CGG | 0.298564 | 4.2:-69357416 | MS.gene72487:CDS |
| GGGAGAGGAGGAGGATGGTG+AGG | 0.312687 | 4.2:+69357684 | None:intergenic |
| TCATTATTAGGTGATTTAAA+AGG | 0.321946 | 4.2:+69357005 | None:intergenic |
| TCAACTCCAACATCATTATT+AGG | 0.325164 | 4.2:+69356993 | None:intergenic |
| GATTTAAAAGGTTTCACATT+AGG | 0.332223 | 4.2:+69357017 | None:intergenic |
| GGTATTTATGGAACTGGTGG+GGG | 0.340078 | 4.2:-69356852 | MS.gene72487:CDS |
| ATTGAATAGATAAACGAGTT+AGG | 0.346295 | 4.2:+69357285 | None:intergenic |
| TTGGCTAATGCTTGGTATGC+TGG | 0.365288 | 4.2:-69356918 | MS.gene72487:CDS |
| GTTATGATGTTTGTTAAAAC+AGG | 0.366999 | 4.2:+69357524 | None:intergenic |
| CTTCTAGGGTTTATAGGTAA+TGG | 0.370465 | 4.2:+69357227 | None:intergenic |
| TATCAATGATCAAGAGCATT+AGG | 0.373851 | 4.2:+69356708 | None:intergenic |
| ATCCTTCAGTTTCCGGTTGG+TGG | 0.375376 | 4.2:-69357409 | MS.gene72487:CDS |
| AGAGGAGGAGGATGGTGAGG+GGG | 0.378705 | 4.2:+69357687 | None:intergenic |
| CAAGGACGGTAGCAGGTTAC+TGG | 0.379884 | 4.2:+69357647 | None:intergenic |
| GAGAGGAGGAGGATGGTGAG+GGG | 0.384614 | 4.2:+69357686 | None:intergenic |
| GCAATTTCCACTGGAAAACT+TGG | 0.385252 | 4.2:+69356888 | None:intergenic |
| GTTACACCTTACCTTATGCT+TGG | 0.398067 | 4.2:-69357106 | MS.gene72487:CDS |
| AATAATGATGTTGGAGTTGA+TGG | 0.404139 | 4.2:-69356990 | MS.gene72487:CDS |
| ATAATATGAATGGGATTAGA+AGG | 0.405760 | 4.2:-69356782 | MS.gene72487:CDS |
| TTACACCTTACCTTATGCTT+GGG | 0.413996 | 4.2:-69357105 | MS.gene72487:CDS |
| GGAGAGGAGGAGGATGGTGA+GGG | 0.416490 | 4.2:+69357685 | None:intergenic |
| TTGAATAGATAAACGAGTTA+GGG | 0.419432 | 4.2:+69357286 | None:intergenic |
| TGTGAGGGTATTTATGGAAC+TGG | 0.428097 | 4.2:-69356858 | MS.gene72487:CDS |
| CATCTGAGTTTGTAAAACTA+AGG | 0.432749 | 4.2:-69357559 | MS.gene72487:CDS |
| CACCGTGTACGGTGGTGGTT+GGG | 0.439165 | 4.2:+69357715 | None:intergenic |
| ATGCTTTACACTGATCAAAC+CGG | 0.447179 | 4.2:-69357377 | MS.gene72487:CDS |
| ACCTTACCTTATGCTTGGGT+TGG | 0.460545 | 4.2:-69357101 | MS.gene72487:CDS |
| AAATCACCTAATAATGATGT+TGG | 0.461585 | 4.2:-69356999 | MS.gene72487:CDS |
| CCGTGAGGAGGGAGAGGAGG+AGG | 0.466174 | 4.2:+69357675 | None:intergenic |
| GTATTTCTTGGAAGCTCCGA+AGG | 0.466484 | 4.2:+69357589 | None:intergenic |
| AGGGTATTTATGGAACTGGT+GGG | 0.467908 | 4.2:-69356854 | MS.gene72487:CDS |
| TGAGCTGGCAAGTAACCCTT+TGG | 0.476541 | 4.2:-69356937 | MS.gene72487:CDS |
| CAGTAACCTGCTACCGTCCT+TGG | 0.478495 | 4.2:-69357646 | MS.gene72487:CDS |
| CCACCGTGTACGGTGGTGGT+TGG | 0.480199 | 4.2:+69357714 | None:intergenic |
| TTGTGGCCAAGGACGGTAGC+AGG | 0.487003 | 4.2:+69357640 | None:intergenic |
| AACATAACAGATTACGCCTT+CGG | 0.493579 | 4.2:-69357605 | MS.gene72487:CDS |
| AGAGCCACCGTGTACGGTGG+TGG | 0.496136 | 4.2:+69357710 | None:intergenic |
| GATGGTATGATAAGTGTGAT+AGG | 0.498355 | 4.2:-69356972 | MS.gene72487:CDS |
| AGGACATGAACTTGCTGAGC+TGG | 0.501455 | 4.2:-69356952 | MS.gene72487:CDS |
| CCACCGTGAGGAGGGAGAGG+AGG | 0.502559 | 4.2:+69357672 | None:intergenic |
| CTCATCCTTCAGTTTCCGGT+TGG | 0.502732 | 4.2:-69357412 | MS.gene72487:CDS |
| CGTGTTTGAGATATTAGACC+CGG | 0.510220 | 4.2:+69357358 | None:intergenic |
| CGGTGGTGGTTGGGTAGGTG+AGG | 0.513909 | 4.2:+69357724 | None:intergenic |
| GTGCCACGTATAATATGAAT+GGG | 0.514329 | 4.2:-69356791 | MS.gene72487:CDS |
| GTAACCCTTTGGCTAATGCT+TGG | 0.515118 | 4.2:-69356926 | MS.gene72487:CDS |
| CTATTACCAACCCAAGCATA+AGG | 0.521989 | 4.2:+69357095 | None:intergenic |
| TTGATCAGTGTAAAGCATAA+CGG | 0.523242 | 4.2:+69357382 | None:intergenic |
| ATCTCAAACACGGTTCATCT+AGG | 0.532471 | 4.2:-69357347 | MS.gene72487:CDS |
| GGTGCCACGTATAATATGAA+TGG | 0.532803 | 4.2:-69356792 | MS.gene72487:CDS |
| GAGGGTATTTATGGAACTGG+TGG | 0.535445 | 4.2:-69356855 | MS.gene72487:CDS |
| CCTCCTCCTCTCCCTCCTCA+CGG | 0.539621 | 4.2:-69357675 | MS.gene72487:CDS |
| ACCGTTCATACAATTTGGTA+CGG | 0.540027 | 4.2:-69357503 | MS.gene72487:CDS |
| GGGTGGATCTTATACGGGAC+AGG | 0.540517 | 4.2:-69356832 | MS.gene72487:CDS |
| CATACCAAGCATTAGCCAAA+GGG | 0.541904 | 4.2:+69356922 | None:intergenic |
| GATCCACCGTGAGGAGGGAG+AGG | 0.544015 | 4.2:+69357669 | None:intergenic |
| TACTGGATCCACCGTGAGGA+GGG | 0.544030 | 4.2:+69357664 | None:intergenic |
| ACCGTACCAAATTGTATGAA+CGG | 0.544036 | 4.2:+69357502 | None:intergenic |
| AGAGATATAAACCACTTCTA+GGG | 0.547947 | 4.2:+69357213 | None:intergenic |
| CACAAATCAGCAATTTCCAC+TGG | 0.549035 | 4.2:+69356879 | None:intergenic |
| GATTTCTGCACGTCAGCATG+TGG | 0.549435 | 4.2:-69357161 | MS.gene72487:CDS |
| GAGGAGGGAGAGGAGGAGGA+TGG | 0.553650 | 4.2:+69357679 | None:intergenic |
| CATAAACTGTGGAACAGCGT+AGG | 0.563772 | 4.2:+69357040 | None:intergenic |
| ATAAACTGTGGAACAGCGTA+GGG | 0.565866 | 4.2:+69357041 | None:intergenic |
| GCTAATGCTTGGTATGCTGG+TGG | 0.566404 | 4.2:-69356915 | MS.gene72487:CDS |
| GGGAGAGCCACCGTGTACGG+TGG | 0.569795 | 4.2:+69357707 | None:intergenic |
| GCATACCAAGCATTAGCCAA+AGG | 0.572741 | 4.2:+69356921 | None:intergenic |
| GTGTACGGTGGTGGTTGGGT+AGG | 0.577747 | 4.2:+69357719 | None:intergenic |
| TACCCAACCACCACCGTACA+CGG | 0.578010 | 4.2:-69357717 | MS.gene72487:CDS |
| GTAGGGATATGCACACTGTC+CGG | 0.583613 | 4.2:+69357058 | None:intergenic |
| ACCAACCCAAGCATAAGGTA+AGG | 0.583852 | 4.2:+69357100 | None:intergenic |
| TTACCTATAAACCCTAGAAG+TGG | 0.584847 | 4.2:-69357224 | MS.gene72487:CDS |
| TTCCACCAACCGGAAACTGA+AGG | 0.593014 | 4.2:+69357407 | None:intergenic |
| GGGTATTTATGGAACTGGTG+GGG | 0.593523 | 4.2:-69356853 | MS.gene72487:CDS |
| TGCTTTACACTGATCAAACC+GGG | 0.595325 | 4.2:-69357376 | MS.gene72487:CDS |
| AATAGTGAGAAATTCTGTGC+CGG | 0.601499 | 4.2:-69357077 | MS.gene72487:CDS |
| AAGGTGTAACCAACAAGTGA+AGG | 0.610334 | 4.2:+69357119 | None:intergenic |
| CAACCGGAAACTGAAGGATG+AGG | 0.620599 | 4.2:+69357413 | None:intergenic |
| TTACTGGATCCACCGTGAGG+AGG | 0.627466 | 4.2:+69357663 | None:intergenic |
| GAAATTGCTGATTTGTGTGA+GGG | 0.629876 | 4.2:-69356873 | MS.gene72487:CDS |
| TGTAAAACTAAGGTACCACA+TGG | 0.633747 | 4.2:-69357549 | MS.gene72487:CDS |
| ATTTCTGCACGTCAGCATGT+GGG | 0.635740 | 4.2:-69357160 | MS.gene72487:CDS |
| CGGGTCTAATATCTCAAACA+CGG | 0.644523 | 4.2:-69357357 | MS.gene72487:CDS |
| GGAGCTTCCAAGAAATACGA+AGG | 0.653895 | 4.2:-69357584 | MS.gene72487:CDS |
| CCTCCTCTCCCTCCTCACGG+TGG | 0.665686 | 4.2:-69357672 | MS.gene72487:CDS |
| GGAAATTGCTGATTTGTGTG+AGG | 0.676757 | 4.2:-69356874 | MS.gene72487:CDS |
| TTCACATTAGGCATAAACTG+TGG | 0.683349 | 4.2:+69357029 | None:intergenic |
| TTGTTAAAACAGGTCCCATG+TGG | 0.691037 | 4.2:+69357534 | None:intergenic |
| AATCCCATTCATATTATACG+TGG | 0.705015 | 4.2:+69356788 | None:intergenic |
| AGGTTACTGGATCCACCGTG+AGG | 0.732047 | 4.2:+69357660 | None:intergenic |
| CCAACCACCACCGTACACGG+TGG | 0.746729 | 4.2:-69357714 | MS.gene72487:CDS |
| GTAAAACTAAGGTACCACAT+GGG | 0.766148 | 4.2:-69357548 | MS.gene72487:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCATTATTAGGTGATTTAAA+AGG | + | chr4.2:69357442-69357461 | None:intergenic | 20.0% |
| !!! | AATCTGTTATGTTTTTTGTA+GGG | + | chr4.2:69356832-69356851 | None:intergenic | 20.0% |
| !!! | TAATCTGTTATGTTTTTTGT+AGG | + | chr4.2:69356833-69356852 | None:intergenic | 20.0% |
| !!! | TCTAATAGCACTTTTAATAA+CGG | + | chr4.2:69357185-69357204 | None:intergenic | 20.0% |
| ! | AAATCACCTAATAATGATGT+TGG | - | chr4.2:69357445-69357464 | MS.gene72487:CDS | 25.0% |
| ! | ATAATATGAATGGGATTAGA+AGG | - | chr4.2:69357662-69357681 | MS.gene72487:CDS | 25.0% |
| ! | ATTGAATAGATAAACGAGTT+AGG | + | chr4.2:69357162-69357181 | None:intergenic | 25.0% |
| ! | GATTTAAAAGGTTTCACATT+AGG | + | chr4.2:69357430-69357449 | None:intergenic | 25.0% |
| ! | TTGAATAGATAAACGAGTTA+GGG | + | chr4.2:69357161-69357180 | None:intergenic | 25.0% |
| !! | ACTCACGTATAATTTTCTTT+TGG | + | chr4.2:69356982-69357001 | None:intergenic | 25.0% |
| !! | GTTATGATGTTTGTTAAAAC+AGG | + | chr4.2:69356923-69356942 | None:intergenic | 25.0% |
| !! | TTTTACCATGAGAATAAAAC+CGG | + | chr4.2:69357138-69357157 | None:intergenic | 25.0% |
| !!! | CATGTTTTGAATTATTGTAC+TGG | - | chr4.2:69357712-69357731 | MS.gene72487:CDS | 25.0% |
| AAGAGATATAAACCACTTCT+AGG | + | chr4.2:69357235-69357254 | None:intergenic | 30.0% | |
| AATAATGATGTTGGAGTTGA+TGG | - | chr4.2:69357454-69357473 | MS.gene72487:CDS | 30.0% | |
| AATCCCATTCATATTATACG+TGG | + | chr4.2:69357659-69357678 | None:intergenic | 30.0% | |
| AGAGATATAAACCACTTCTA+GGG | + | chr4.2:69357234-69357253 | None:intergenic | 30.0% | |
| ATACAATTTGGTACGGTAAT+TGG | - | chr4.2:69356948-69356967 | MS.gene72487:CDS | 30.0% | |
| CATCTGAGTTTGTAAAACTA+AGG | - | chr4.2:69356885-69356904 | MS.gene72487:CDS | 30.0% | |
| TCAACTCCAACATCATTATT+AGG | + | chr4.2:69357454-69357473 | None:intergenic | 30.0% | |
| TCATAACCGTTCATACAATT+TGG | - | chr4.2:69356936-69356955 | MS.gene72487:CDS | 30.0% | |
| TTGATCAGTGTAAAGCATAA+CGG | + | chr4.2:69357065-69357084 | None:intergenic | 30.0% | |
| TTTACATTTCCTTCACTTGT+TGG | - | chr4.2:69357316-69357335 | MS.gene72487:CDS | 30.0% | |
| !!! | ATGTTTTTTGTAGGGTTTTG+TGG | + | chr4.2:69356824-69356843 | None:intergenic | 30.0% |
| AACATAACAGATTACGCCTT+CGG | - | chr4.2:69356839-69356858 | MS.gene72487:CDS | 35.0% | |
| AATAGTGAGAAATTCTGTGC+CGG | - | chr4.2:69357367-69357386 | MS.gene72487:CDS | 35.0% | |
| ACCGTACCAAATTGTATGAA+CGG | + | chr4.2:69356945-69356964 | None:intergenic | 35.0% | |
| ACCGTTCATACAATTTGGTA+CGG | - | chr4.2:69356941-69356960 | MS.gene72487:CDS | 35.0% | |
| AGATGAACCTTCGTATTTCT+TGG | + | chr4.2:69356870-69356889 | None:intergenic | 35.0% | |
| ATGCTTTACACTGATCAAAC+CGG | - | chr4.2:69357067-69357086 | MS.gene72487:CDS | 35.0% | |
| GATGGTATGATAAGTGTGAT+AGG | - | chr4.2:69357472-69357491 | MS.gene72487:CDS | 35.0% | |
| GTGCCACGTATAATATGAAT+GGG | - | chr4.2:69357653-69357672 | MS.gene72487:CDS | 35.0% | |
| TAGGTCAAGAAAAAAACGAC+CGG | - | chr4.2:69357116-69357135 | MS.gene72487:CDS | 35.0% | |
| TTACACCTTACCTTATGCTT+GGG | - | chr4.2:69357339-69357358 | MS.gene72487:CDS | 35.0% | |
| TTACCTATAAACCCTAGAAG+TGG | - | chr4.2:69357220-69357239 | MS.gene72487:CDS | 35.0% | |
| TTCACATTAGGCATAAACTG+TGG | + | chr4.2:69357418-69357437 | None:intergenic | 35.0% | |
| ! | GTAAAACTAAGGTACCACAT+GGG | - | chr4.2:69356896-69356915 | MS.gene72487:CDS | 35.0% |
| ! | TGGGATTAGAAGGAAGTTTT+TGG | - | chr4.2:69357672-69357691 | MS.gene72487:CDS | 35.0% |
| ! | TGTAAAACTAAGGTACCACA+TGG | - | chr4.2:69356895-69356914 | MS.gene72487:CDS | 35.0% |
| !! | AAACCACTTCTAGGGTTTAT+AGG | + | chr4.2:69357226-69357245 | None:intergenic | 35.0% |
| !! | CTTCTAGGGTTTATAGGTAA+TGG | + | chr4.2:69357220-69357239 | None:intergenic | 35.0% |
| !! | GAAATTGCTGATTTGTGTGA+GGG | - | chr4.2:69357571-69357590 | MS.gene72487:CDS | 35.0% |
| !! | GATTTGTGTGAGGGTATTTA+TGG | - | chr4.2:69357580-69357599 | MS.gene72487:CDS | 35.0% |
| AAGGTGTAACCAACAAGTGA+AGG | + | chr4.2:69357328-69357347 | None:intergenic | 40.0% | |
| ATAAACTGTGGAACAGCGTA+GGG | + | chr4.2:69357406-69357425 | None:intergenic | 40.0% | |
| ATCTCAAACACGGTTCATCT+AGG | - | chr4.2:69357097-69357116 | MS.gene72487:CDS | 40.0% | |
| CACAAATCAGCAATTTCCAC+TGG | + | chr4.2:69357568-69357587 | None:intergenic | 40.0% | |
| CATACCAAGCATTAGCCAAA+GGG | + | chr4.2:69357525-69357544 | None:intergenic | 40.0% | |
| CGGGTCTAATATCTCAAACA+CGG | - | chr4.2:69357087-69357106 | MS.gene72487:CDS | 40.0% | |
| CTATTACCAACCCAAGCATA+AGG | + | chr4.2:69357352-69357371 | None:intergenic | 40.0% | |
| GCAATTTCCACTGGAAAACT+TGG | + | chr4.2:69357559-69357578 | None:intergenic | 40.0% | |
| GTTACACCTTACCTTATGCT+TGG | - | chr4.2:69357338-69357357 | MS.gene72487:CDS | 40.0% | |
| TGCTTTACACTGATCAAACC+GGG | - | chr4.2:69357068-69357087 | MS.gene72487:CDS | 40.0% | |
| TTGTTAAAACAGGTCCCATG+TGG | + | chr4.2:69356913-69356932 | None:intergenic | 40.0% | |
| ! | AGGGTATTTATGGAACTGGT+GGG | - | chr4.2:69357590-69357609 | MS.gene72487:CDS | 40.0% |
| ! | ATCTTATACGGGACAGGTTT+TGG | - | chr4.2:69357618-69357637 | MS.gene72487:CDS | 40.0% |
| ! | CGTGTTTGAGATATTAGACC+CGG | + | chr4.2:69357089-69357108 | None:intergenic | 40.0% |
| ! | GGTGCCACGTATAATATGAA+TGG | - | chr4.2:69357652-69357671 | MS.gene72487:CDS | 40.0% |
| ! | TGAAGGATGAGGTGTGTTTT+TGG | + | chr4.2:69357023-69357042 | None:intergenic | 40.0% |
| !! | GGAAATTGCTGATTTGTGTG+AGG | - | chr4.2:69357570-69357589 | MS.gene72487:CDS | 40.0% |
| !! | TGTGAGGGTATTTATGGAAC+TGG | - | chr4.2:69357586-69357605 | MS.gene72487:CDS | 40.0% |
| !!! | AACGACCGGTTTTATTCTCA+TGG | - | chr4.2:69357130-69357149 | MS.gene72487:CDS | 40.0% |
| !!! | AGTTTTTGGTTCAGTGGCTT+TGG | - | chr4.2:69357686-69357705 | MS.gene72487:CDS | 40.0% |
| !!! | CAGGTTTTGGATGATCATGA+TGG | - | chr4.2:69357631-69357650 | MS.gene72487:CDS | 40.0% |
| !!! | GAAGGAAGTTTTTGGTTCAG+TGG | - | chr4.2:69357680-69357699 | MS.gene72487:CDS | 40.0% |
| ACACCTCATCCTTCAGTTTC+CGG | - | chr4.2:69357028-69357047 | MS.gene72487:CDS | 45.0% | |
| ACCAACCCAAGCATAAGGTA+AGG | + | chr4.2:69357347-69357366 | None:intergenic | 45.0% | |
| ACCTTACCTTATGCTTGGGT+TGG | - | chr4.2:69357343-69357362 | MS.gene72487:CDS | 45.0% | |
| ATTTCTGCACGTCAGCATGT+GGG | - | chr4.2:69357284-69357303 | MS.gene72487:CDS | 45.0% | |
| CATAAACTGTGGAACAGCGT+AGG | + | chr4.2:69357407-69357426 | None:intergenic | 45.0% | |
| GCATACCAAGCATTAGCCAA+AGG | + | chr4.2:69357526-69357545 | None:intergenic | 45.0% | |
| GGAGCTTCCAAGAAATACGA+AGG | - | chr4.2:69356860-69356879 | MS.gene72487:CDS | 45.0% | |
| GGGTATTTATGGAACTGGTG+GGG | - | chr4.2:69357591-69357610 | MS.gene72487:CDS | 45.0% | |
| GGTATTTATGGAACTGGTGG+GGG | - | chr4.2:69357592-69357611 | MS.gene72487:CDS | 45.0% | |
| GTAACCCTTTGGCTAATGCT+TGG | - | chr4.2:69357518-69357537 | MS.gene72487:CDS | 45.0% | |
| GTATTTCTTGGAAGCTCCGA+AGG | + | chr4.2:69356858-69356877 | None:intergenic | 45.0% | |
| TTGGCTAATGCTTGGTATGC+TGG | - | chr4.2:69357526-69357545 | MS.gene72487:CDS | 45.0% | |
| ! | CATAACGGTTTTCCACCAAC+CGG | + | chr4.2:69357050-69357069 | None:intergenic | 45.0% |
| ! | TGGAGATCCAAGTTTTCCAG+TGG | - | chr4.2:69357549-69357568 | MS.gene72487:CDS | 45.0% |
| !! | GAGGGTATTTATGGAACTGG+TGG | - | chr4.2:69357589-69357608 | MS.gene72487:CDS | 45.0% |
| !! | TTTGTAGGGTTTTGTGGCCA+AGG | + | chr4.2:69356818-69356837 | None:intergenic | 45.0% |
| ATCCTTCAGTTTCCGGTTGG+TGG | - | chr4.2:69357035-69357054 | MS.gene72487:CDS | 50.0% | |
| ATTTATGGAACTGGTGGGGG+TGG | - | chr4.2:69357595-69357614 | MS.gene72487:CDS | 50.0% | |
| CAACCGGAAACTGAAGGATG+AGG | + | chr4.2:69357034-69357053 | None:intergenic | 50.0% | |
| CTCATCCTTCAGTTTCCGGT+TGG | - | chr4.2:69357032-69357051 | MS.gene72487:CDS | 50.0% | |
| GATTTCTGCACGTCAGCATG+TGG | - | chr4.2:69357283-69357302 | MS.gene72487:CDS | 50.0% | |
| GCTAATGCTTGGTATGCTGG+TGG | - | chr4.2:69357529-69357548 | MS.gene72487:CDS | 50.0% | |
| GTAGGGATATGCACACTGTC+CGG | + | chr4.2:69357389-69357408 | None:intergenic | 50.0% | |
| TGAGCTGGCAAGTAACCCTT+TGG | - | chr4.2:69357507-69357526 | MS.gene72487:CDS | 50.0% | |
| TGGTGGGGGTGGATCTTATA+CGG | - | chr4.2:69357606-69357625 | MS.gene72487:CDS | 50.0% | |
| TTCCACCAACCGGAAACTGA+AGG | + | chr4.2:69357040-69357059 | None:intergenic | 50.0% | |
| !! | AGGACATGAACTTGCTGAGC+TGG | - | chr4.2:69357492-69357511 | MS.gene72487:CDS | 50.0% |
| !! | TAGGGTTTTGTGGCCAAGGA+CGG | + | chr4.2:69356814-69356833 | None:intergenic | 50.0% |
| AGGTTACTGGATCCACCGTG+AGG | + | chr4.2:69356787-69356806 | None:intergenic | 55.0% | |
| CAAGGACGGTAGCAGGTTAC+TGG | + | chr4.2:69356800-69356819 | None:intergenic | 55.0% | |
| CAGTAACCTGCTACCGTCCT+TGG | - | chr4.2:69356798-69356817 | MS.gene72487:CDS | 55.0% | |
| GGGTGGATCTTATACGGGAC+AGG | - | chr4.2:69357612-69357631 | MS.gene72487:CDS | 55.0% | |
| GGTGGGGGTGGATCTTATAC+GGG | - | chr4.2:69357607-69357626 | MS.gene72487:CDS | 55.0% | |
| TACCCAACCACCACCGTACA+CGG | - | chr4.2:69356727-69356746 | MS.gene72487:CDS | 55.0% | |
| TACTGGATCCACCGTGAGGA+GGG | + | chr4.2:69356783-69356802 | None:intergenic | 55.0% | |
| TTACTGGATCCACCGTGAGG+AGG | + | chr4.2:69356784-69356803 | None:intergenic | 55.0% | |
| AGAGGAGGAGGATGGTGAGG+GGG | + | chr4.2:69356760-69356779 | None:intergenic | 60.0% | |
| GAGAGGAGGAGGATGGTGAG+GGG | + | chr4.2:69356761-69356780 | None:intergenic | 60.0% | |
| GGAGAGGAGGAGGATGGTGA+GGG | + | chr4.2:69356762-69356781 | None:intergenic | 60.0% | |
| TTGTGGCCAAGGACGGTAGC+AGG | + | chr4.2:69356807-69356826 | None:intergenic | 60.0% | |
| ! | CACCGTGTACGGTGGTGGTT+GGG | + | chr4.2:69356732-69356751 | None:intergenic | 60.0% |
| ! | GTGTACGGTGGTGGTTGGGT+AGG | + | chr4.2:69356728-69356747 | None:intergenic | 60.0% |
| AGAGCCACCGTGTACGGTGG+TGG | + | chr4.2:69356737-69356756 | None:intergenic | 65.0% | |
| AGGGGGAGAGCCACCGTGTA+CGG | + | chr4.2:69356743-69356762 | None:intergenic | 65.0% | |
| CCAACCACCACCGTACACGG+TGG | - | chr4.2:69356730-69356749 | MS.gene72487:CDS | 65.0% | |
| CCTCCTCCTCTCCCTCCTCA+CGG | - | chr4.2:69356769-69356788 | MS.gene72487:CDS | 65.0% | |
| GAGGAGGGAGAGGAGGAGGA+TGG | + | chr4.2:69356768-69356787 | None:intergenic | 65.0% | |
| GATCCACCGTGAGGAGGGAG+AGG | + | chr4.2:69356778-69356797 | None:intergenic | 65.0% | |
| GGGAGAGGAGGAGGATGGTG+AGG | + | chr4.2:69356763-69356782 | None:intergenic | 65.0% | |
| ! | CCACCGTGTACGGTGGTGGT+TGG | + | chr4.2:69356733-69356752 | None:intergenic | 65.0% |
| ! | CGGTGGTGGTTGGGTAGGTG+AGG | + | chr4.2:69356723-69356742 | None:intergenic | 65.0% |
| CCACCGTGAGGAGGGAGAGG+AGG | + | chr4.2:69356775-69356794 | None:intergenic | 70.0% | |
| CCGTGAGGAGGGAGAGGAGG+AGG | + | chr4.2:69356772-69356791 | None:intergenic | 70.0% | |
| CCTCCTCTCCCTCCTCACGG+TGG | - | chr4.2:69356772-69356791 | MS.gene72487:CDS | 70.0% | |
| GGGAGAGCCACCGTGTACGG+TGG | + | chr4.2:69356740-69356759 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 69356710 | 69357756 | 69356710 | ID=MS.gene72487 |
| chr4.2 | mRNA | 69356710 | 69357756 | 69356710 | ID=MS.gene72487.t1;Parent=MS.gene72487 |
| chr4.2 | exon | 69356710 | 69357756 | 69356710 | ID=MS.gene72487.t1.exon1;Parent=MS.gene72487.t1 |
| chr4.2 | CDS | 69356710 | 69357756 | 69356710 | ID=cds.MS.gene72487.t1;Parent=MS.gene72487.t1 |
| Gene Sequence |
| Protein sequence |
