Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74511.t1 | XP_013442808.1 | 93.4 | 182 | 12 | 0 | 1 | 182 | 12 | 193 | 8.00E-61 | 243.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74511.t1 | Q9LXD1 | 52.7 | 182 | 71 | 3 | 1 | 182 | 14 | 180 | 3.5e-41 | 169.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74511.t1 | A0A072TIW3 | 93.4 | 182 | 12 | 0 | 1 | 182 | 12 | 193 | 5.8e-61 | 243.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049283 | MS.gene74511 | 0.844169 | 8.93E-59 | -1.69E-46 |
| MS.gene049499 | MS.gene74511 | 0.80926 | 2.07E-50 | -1.69E-46 |
| MS.gene049801 | MS.gene74511 | 0.815545 | 8.75E-52 | -1.69E-46 |
| MS.gene049983 | MS.gene74511 | 0.857396 | 1.68E-62 | -1.69E-46 |
| MS.gene050654 | MS.gene74511 | 0.820556 | 6.44E-53 | -1.69E-46 |
| MS.gene050941 | MS.gene74511 | 0.801717 | 7.89E-49 | -1.69E-46 |
| MS.gene051003 | MS.gene74511 | 0.803219 | 3.87E-49 | -1.69E-46 |
| MS.gene051184 | MS.gene74511 | 0.823231 | 1.55E-53 | -1.69E-46 |
| MS.gene051541 | MS.gene74511 | 0.827452 | 1.55E-54 | -1.69E-46 |
| MS.gene051655 | MS.gene74511 | 0.811136 | 8.14E-51 | -1.69E-46 |
| MS.gene052674 | MS.gene74511 | 0.812439 | 4.24E-51 | -1.69E-46 |
| MS.gene052675 | MS.gene74511 | 0.810765 | 9.79E-51 | -1.69E-46 |
| MS.gene052677 | MS.gene74511 | 0.809784 | 1.59E-50 | -1.69E-46 |
| MS.gene053726 | MS.gene74511 | 0.811103 | 8.28E-51 | -1.69E-46 |
| MS.gene054479 | MS.gene74511 | 0.818569 | 1.83E-52 | -1.69E-46 |
| MS.gene054576 | MS.gene74511 | 0.804613 | 1.99E-49 | -1.69E-46 |
| MS.gene054892 | MS.gene74511 | 0.830439 | 2.93E-55 | -1.69E-46 |
| MS.gene054893 | MS.gene74511 | 0.834539 | 2.83E-56 | -1.69E-46 |
| MS.gene055864 | MS.gene74511 | 0.814074 | 1.85E-51 | -1.69E-46 |
| MS.gene056699 | MS.gene74511 | 0.800075 | 1.71E-48 | -1.69E-46 |
| MS.gene057622 | MS.gene74511 | 0.80175 | 7.77E-49 | -1.69E-46 |
| MS.gene058095 | MS.gene74511 | 0.804661 | 1.94E-49 | -1.69E-46 |
| MS.gene058159 | MS.gene74511 | 0.804579 | 2.02E-49 | -1.69E-46 |
| MS.gene058429 | MS.gene74511 | 0.849524 | 3.06E-60 | -1.69E-46 |
| MS.gene058592 | MS.gene74511 | 0.814298 | 1.65E-51 | -1.69E-46 |
| MS.gene059170 | MS.gene74511 | 0.818626 | 1.78E-52 | -1.69E-46 |
| MS.gene05952 | MS.gene74511 | 0.815096 | 1.10E-51 | -1.69E-46 |
| MS.gene05956 | MS.gene74511 | 0.804411 | 2.19E-49 | -1.69E-46 |
| MS.gene060259 | MS.gene74511 | 0.801405 | 9.14E-49 | -1.69E-46 |
| MS.gene06052 | MS.gene74511 | 0.806462 | 8.13E-50 | -1.69E-46 |
| MS.gene060840 | MS.gene74511 | 0.817338 | 3.47E-52 | -1.69E-46 |
| MS.gene060850 | MS.gene74511 | 0.813121 | 3.01E-51 | -1.69E-46 |
| MS.gene060851 | MS.gene74511 | 0.818031 | 2.42E-52 | -1.69E-46 |
| MS.gene060852 | MS.gene74511 | 0.818451 | 1.95E-52 | -1.69E-46 |
| MS.gene060932 | MS.gene74511 | 0.833141 | 6.33E-56 | -1.69E-46 |
| MS.gene060937 | MS.gene74511 | 0.806181 | 9.32E-50 | -1.69E-46 |
| MS.gene06121 | MS.gene74511 | 0.804206 | 2.41E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74511.t1 | MTR_0085s0010 | 95.055 | 182 | 9 | 0 | 1 | 182 | 12 | 193 | 1.64e-117 | 332 |
| MS.gene74511.t1 | MTR_3g092095 | 43.860 | 57 | 32 | 0 | 126 | 182 | 3 | 59 | 5.88e-12 | 60.5 |
| MS.gene74511.t1 | MTR_7g117990 | 36.842 | 57 | 36 | 0 | 126 | 182 | 4 | 60 | 6.42e-11 | 58.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74511.t1 | AT5G09680 | 58.791 | 182 | 60 | 4 | 1 | 182 | 14 | 180 | 2.92e-66 | 202 |
| MS.gene74511.t1 | AT5G09680 | 58.791 | 182 | 60 | 4 | 1 | 182 | 14 | 180 | 2.92e-66 | 202 |
| MS.gene74511.t1 | AT5G09680 | 58.791 | 182 | 60 | 4 | 1 | 182 | 60 | 226 | 9.85e-66 | 202 |
| MS.gene74511.t1 | AT5G53560 | 40.351 | 57 | 34 | 0 | 126 | 182 | 3 | 59 | 2.93e-12 | 61.2 |
| MS.gene74511.t1 | AT1G26340 | 44.444 | 54 | 30 | 0 | 129 | 182 | 6 | 59 | 2.55e-11 | 58.9 |
Find 35 sgRNAs with CRISPR-Local
Find 141 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTGAGGATTCTTCCTTTA+TGG | 0.134703 | 4.1:+58987460 | None:intergenic |
| ACAATAATGGTGGTATCTTA+TGG | 0.283733 | 4.1:-58987421 | MS.gene74511:CDS |
| GTTACTACTGCTTGCATTTG+AGG | 0.317183 | 4.1:+58987445 | None:intergenic |
| TGATTCTTCAAACTCTAAAA+AGG | 0.332088 | 4.1:-58987381 | MS.gene74511:CDS |
| CCAGGGTGAAACGTCATATA+TGG | 0.357413 | 4.1:+58985641 | None:intergenic |
| CGAACTCATCCTGACCTTGC+AGG | 0.392085 | 4.1:-58987176 | MS.gene74511:intron |
| GAACAGGAGACTAATTTCTA+TGG | 0.394765 | 4.1:-58985735 | MS.gene74511:CDS |
| GTCTAAAAGGACAGTCGAAC+AGG | 0.400231 | 4.1:-58985751 | MS.gene74511:CDS |
| TATGTTGATCCAGGTCTAAA+AGG | 0.419525 | 4.1:-58985764 | MS.gene74511:intron |
| AGCAGTAGTAACAACAATAA+TGG | 0.427293 | 4.1:-58987434 | MS.gene74511:CDS |
| TGAAAAGGGTTATAGTCAAA+TGG | 0.427823 | 4.1:-58987216 | MS.gene74511:CDS |
| AATCGCGGATATTTCCATAA+AGG | 0.455333 | 4.1:-58987474 | MS.gene74511:CDS |
| ATAACAGCACCTGCAAGGTC+AGG | 0.484107 | 4.1:+58987167 | None:intergenic |
| CGAATCCTTAGCATCACTCT+TGG | 0.489419 | 4.1:+58987304 | None:intergenic |
| AGCTTGTTTGTTTCCACCGC+AGG | 0.499500 | 4.1:+58987506 | None:intergenic |
| GGAACTTTGGCCCGAACCGT+TGG | 0.513323 | 4.1:+58987242 | None:intergenic |
| GGTGGTATCTTATGGAAGGA+TGG | 0.518034 | 4.1:-58987413 | MS.gene74511:CDS |
| AGGGTTATAGTCAAATGGAT+TGG | 0.535477 | 4.1:-58987211 | MS.gene74511:CDS |
| ATCAACCAAGAGTGATGCTA+AGG | 0.568914 | 4.1:-58987309 | MS.gene74511:CDS |
| GTTAGAAAGCACAAAACAGA+AGG | 0.581274 | 4.1:-58985707 | MS.gene74511:CDS |
| TTCTGTTCTGACAACTTCTG+AGG | 0.595702 | 4.1:+58987281 | None:intergenic |
| TAATGGTGGTATCTTATGGA+AGG | 0.596595 | 4.1:-58987417 | MS.gene74511:CDS |
| TGATATGTTGATGAAGGCAG+TGG | 0.613696 | 4.1:-58985508 | MS.gene74511:CDS |
| CAAGCTTGTTTCAGAAATCG+CGG | 0.617791 | 4.1:-58987489 | MS.gene74511:CDS |
| AGGTGTTGATATGTTGATGA+AGG | 0.619372 | 4.1:-58985514 | MS.gene74511:CDS |
| CCATATATGACGTTTCACCC+TGG | 0.621706 | 4.1:-58985641 | MS.gene74511:CDS |
| ACAGAATAACAGCACCTGCA+AGG | 0.634591 | 4.1:+58987162 | None:intergenic |
| AGTAGTAACAACAATAATGG+TGG | 0.644225 | 4.1:-58987431 | MS.gene74511:CDS |
| GTAGGTGAGTACACCTGCGG+TGG | 0.648416 | 4.1:-58987519 | None:intergenic |
| ACAAAACAGAAGGTGAAATG+TGG | 0.673732 | 4.1:-58985697 | MS.gene74511:CDS |
| ATGGTGATATATTGTAGACA+CGG | 0.675806 | 4.1:+58985660 | None:intergenic |
| GATATGTTGATGAAGGCAGT+GGG | 0.698446 | 4.1:-58985507 | MS.gene74511:CDS |
| TATATGACGTTTCACCCTGG+AGG | 0.704322 | 4.1:-58985638 | MS.gene74511:intron |
| GAAATGTGGACTGTATTGAA+AGG | 0.710255 | 4.1:-58985683 | MS.gene74511:CDS |
| TTTGTAGGTGAGTACACCTG+CGG | 0.761431 | 4.1:-58987522 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAATATTTAAAAAGTG+AGG | + | chr4.1:58986691-58986710 | None:intergenic | 10.0% |
| !! | AAAAAATATTTAAAAAGTGA+GGG | + | chr4.1:58986690-58986709 | None:intergenic | 10.0% |
| !!! | TCACTTTTTAAATATTTTTT+TGG | - | chr4.1:58986690-58986709 | MS.gene74511:intron | 10.0% |
| !! | AAAAATATTTAAAAAGTGAG+GGG | + | chr4.1:58986689-58986708 | None:intergenic | 15.0% |
| !! | TATAGTTATGTACATATAAA+TGG | + | chr4.1:58987066-58987085 | None:intergenic | 15.0% |
| !!! | TTACAATTTTTAAGAATAAG+AGG | - | chr4.1:58987189-58987208 | MS.gene74511:CDS | 15.0% |
| !! | AAAGAAAGCTAACATTTATA+AGG | + | chr4.1:58986939-58986958 | None:intergenic | 20.0% |
| !! | AAGAAAAAAGAATGGAATTA+AGG | + | chr4.1:58986828-58986847 | None:intergenic | 20.0% |
| !! | AGAAAAAAGAATGGAATTAA+GGG | + | chr4.1:58986827-58986846 | None:intergenic | 20.0% |
| !! | GATTAGATATTATTAGAACT+TGG | + | chr4.1:58986067-58986086 | None:intergenic | 20.0% |
| !!! | TTTCTTTTCACTTCAATTAA+CGG | - | chr4.1:58986842-58986861 | MS.gene74511:intron | 20.0% |
| ! | AGTTGAAAAATGAATATGTG+TGG | - | chr4.1:58985956-58985975 | MS.gene74511:intron | 25.0% |
| ! | ATTATATATGCATTTCCTGT+TGG | - | chr4.1:58987453-58987472 | MS.gene74511:CDS | 25.0% |
| ! | GAAAAAAGAATGGAATTAAG+GGG | + | chr4.1:58986826-58986845 | None:intergenic | 25.0% |
| ! | GAAGTGAAAAGAAAAAAGAA+TGG | + | chr4.1:58986836-58986855 | None:intergenic | 25.0% |
| ! | TAATATCTAATCCCAATTGT+TGG | - | chr4.1:58986075-58986094 | MS.gene74511:intron | 25.0% |
| ! | TAGATATTATTAGAACTTGG+AGG | + | chr4.1:58986064-58986083 | None:intergenic | 25.0% |
| ! | TATCATACTATCATAAGCAT+TGG | + | chr4.1:58986020-58986039 | None:intergenic | 25.0% |
| ! | TGTACATAACTATATATCAG+AGG | - | chr4.1:58987072-58987091 | MS.gene74511:intron | 25.0% |
| ! | TTATATATGCATTTCCTGTT+GGG | - | chr4.1:58987454-58987473 | MS.gene74511:CDS | 25.0% |
| !! | ATTTTACGTATAATCCGTAA+GGG | + | chr4.1:58986571-58986590 | None:intergenic | 25.0% |
| !! | TGATTCTTCAAACTCTAAAA+AGG | - | chr4.1:58985618-58985637 | MS.gene74511:intron | 25.0% |
| !! | TTCAAGTATTGTCAACAATA+TGG | + | chr4.1:58985907-58985926 | None:intergenic | 25.0% |
| !! | TTTTTGGATATTTCTTTCCA+AGG | - | chr4.1:58986706-58986725 | MS.gene74511:intron | 25.0% |
| !!! | TTGTACTTGTTTTGTTATGT+TGG | - | chr4.1:58987105-58987124 | MS.gene74511:intron | 25.0% |
| AAATGAAAATCACACAGCAA+AGG | + | chr4.1:58986764-58986783 | None:intergenic | 30.0% | |
| AACACTAATCGTAAAATCGT+AGG | + | chr4.1:58986178-58986197 | None:intergenic | 30.0% | |
| ACAATAATGGTGGTATCTTA+TGG | - | chr4.1:58985578-58985597 | MS.gene74511:intron | 30.0% | |
| AGCAGTAGTAACAACAATAA+TGG | - | chr4.1:58985565-58985584 | MS.gene74511:intron | 30.0% | |
| AGTAGTAACAACAATAATGG+TGG | - | chr4.1:58985568-58985587 | MS.gene74511:intron | 30.0% | |
| ATAAATGGTCTACAACTTTC+TGG | + | chr4.1:58987051-58987070 | None:intergenic | 30.0% | |
| ATAACACTTACTCTCAATCA+TGG | - | chr4.1:58986122-58986141 | MS.gene74511:intron | 30.0% | |
| ATGGTGATATATTGTAGACA+CGG | + | chr4.1:58987342-58987361 | None:intergenic | 30.0% | |
| ATTAACGGAAGCGATTATAT+AGG | + | chr4.1:58986252-58986271 | None:intergenic | 30.0% | |
| ATTTGAGGATTCTTCCTTTA+TGG | + | chr4.1:58985542-58985561 | None:intergenic | 30.0% | |
| CTAACATTTATAAGGAAGAG+TGG | + | chr4.1:58986931-58986950 | None:intergenic | 30.0% | |
| GGTCATATCAACTTTAGTAA+TGG | + | chr4.1:58986043-58986062 | None:intergenic | 30.0% | |
| TATATATGCATTTCCTGTTG+GGG | - | chr4.1:58987455-58987474 | MS.gene74511:CDS | 30.0% | |
| TGAAAAGGGTTATAGTCAAA+TGG | - | chr4.1:58985783-58985802 | MS.gene74511:intron | 30.0% | |
| ! | ATCGTGGATTTTACGATTAA+CGG | + | chr4.1:58986267-58986286 | None:intergenic | 30.0% |
| ! | GATTTTACGTATAATCCGTA+AGG | + | chr4.1:58986572-58986591 | None:intergenic | 30.0% |
| ! | TCTTCAAACTCTAAAAAGGA+GGG | - | chr4.1:58985622-58985641 | MS.gene74511:intron | 30.0% |
| ! | TGACTATAACCCTTTTCAAA+AGG | + | chr4.1:58985781-58985800 | None:intergenic | 30.0% |
| ! | TTCTTCAAACTCTAAAAAGG+AGG | - | chr4.1:58985621-58985640 | MS.gene74511:intron | 30.0% |
| ! | TTTTACGTATAATCCGTAAG+GGG | + | chr4.1:58986570-58986589 | None:intergenic | 30.0% |
| !! | ATTTCACTGATTTAGGATTC+TGG | + | chr4.1:58986224-58986243 | None:intergenic | 30.0% |
| !! | CTATCATAAGCATTGGAAAT+TGG | + | chr4.1:58986013-58986032 | None:intergenic | 30.0% |
| !! | GGATTTCATTTCACTGATTT+AGG | + | chr4.1:58986231-58986250 | None:intergenic | 30.0% |
| !! | TTTCACTGATTTAGGATTCT+GGG | + | chr4.1:58986223-58986242 | None:intergenic | 30.0% |
| AAAAGAATGGAATTAAGGGG+CGG | + | chr4.1:58986823-58986842 | None:intergenic | 35.0% | |
| AACATCATGTATGTTGATCC+AGG | - | chr4.1:58987226-58987245 | MS.gene74511:CDS | 35.0% | |
| AATCGCGGATATTTCCATAA+AGG | - | chr4.1:58985525-58985544 | MS.gene74511:intron | 35.0% | |
| ACAAAACAGAAGGTGAAATG+TGG | - | chr4.1:58987302-58987321 | MS.gene74511:CDS | 35.0% | |
| AGAAACCCATTTCAGTAACT+CGG | - | chr4.1:58986384-58986403 | MS.gene74511:intron | 35.0% | |
| AGAGCAAGGTAGTAAAAATC+AGG | + | chr4.1:58986594-58986613 | None:intergenic | 35.0% | |
| AGAGCTTGAAACCAAAAGTA+GGG | + | chr4.1:58986877-58986896 | None:intergenic | 35.0% | |
| AGGGTTATAGTCAAATGGAT+TGG | - | chr4.1:58985788-58985807 | MS.gene74511:intron | 35.0% | |
| AGTCTCACGAGTTACTAAAA+CGG | + | chr4.1:58986424-58986443 | None:intergenic | 35.0% | |
| ATGTTGTTATGTTCCCCTTA+CGG | - | chr4.1:58986554-58986573 | MS.gene74511:intron | 35.0% | |
| CAATCATGGTAGTCAAAATC+AGG | - | chr4.1:58986136-58986155 | MS.gene74511:intron | 35.0% | |
| CTAGTTTAAGTGCATCATGT+AGG | - | chr4.1:58986464-58986483 | MS.gene74511:intron | 35.0% | |
| GAACAGGAGACTAATTTCTA+TGG | - | chr4.1:58987264-58987283 | MS.gene74511:CDS | 35.0% | |
| GAGTTCTGTTAAAAAGCCAA+CGG | - | chr4.1:58985741-58985760 | MS.gene74511:CDS | 35.0% | |
| TAATGGTGGTATCTTATGGA+AGG | - | chr4.1:58985582-58985601 | MS.gene74511:intron | 35.0% | |
| TATGTTGATCCAGGTCTAAA+AGG | - | chr4.1:58987235-58987254 | MS.gene74511:CDS | 35.0% | |
| TTAACCCGAGTTACTGAAAT+GGG | + | chr4.1:58986392-58986411 | None:intergenic | 35.0% | |
| TTGAAAGAGTTAAGAGCTAC+TGG | - | chr4.1:58985922-58985941 | MS.gene74511:intron | 35.0% | |
| ! | ACCCTTTTCAAAAGGAACTT+TGG | + | chr4.1:58985773-58985792 | None:intergenic | 35.0% |
| ! | AGATAGCTTTTGCCAACAAT+TGG | + | chr4.1:58986090-58986109 | None:intergenic | 35.0% |
| ! | ATGGAACGTTTTCAAATCGT+GGG | - | chr4.1:58986357-58986376 | MS.gene74511:intron | 35.0% |
| ! | GAAATGTGGACTGTATTGAA+AGG | - | chr4.1:58987316-58987335 | MS.gene74511:CDS | 35.0% |
| ! | GATAGCTTTTGCCAACAATT+GGG | + | chr4.1:58986089-58986108 | None:intergenic | 35.0% |
| ! | GTTAGAAAGCACAAAACAGA+AGG | - | chr4.1:58987292-58987311 | MS.gene74511:CDS | 35.0% |
| ! | TCTAAAAAGGAGGGTACAAT+TGG | - | chr4.1:58985631-58985650 | MS.gene74511:intron | 35.0% |
| !! | AGGTGTTGATATGTTGATGA+AGG | - | chr4.1:58987485-58987504 | MS.gene74511:CDS | 35.0% |
| !! | GCCAAAGTTCCTTTTGAAAA+GGG | - | chr4.1:58985769-58985788 | MS.gene74511:intron | 35.0% |
| !!! | AGTTGATAGTTTTACCTCCA+GGG | + | chr4.1:58987378-58987397 | None:intergenic | 35.0% |
| AAAGAATGGAATTAAGGGGC+GGG | + | chr4.1:58986822-58986841 | None:intergenic | 40.0% | |
| ATCAACCAAGAGTGATGCTA+AGG | - | chr4.1:58985690-58985709 | MS.gene74511:CDS | 40.0% | |
| CAGAGCTTGAAACCAAAAGT+AGG | + | chr4.1:58986878-58986897 | None:intergenic | 40.0% | |
| CTGTTAAAAAGCCAACGGTT+CGG | - | chr4.1:58985746-58985765 | MS.gene74511:CDS | 40.0% | |
| GAAACCCATTTCAGTAACTC+GGG | - | chr4.1:58986385-58986404 | MS.gene74511:intron | 40.0% | |
| GATCAACCATTCAATTCCAG+AGG | + | chr4.1:58986632-58986651 | None:intergenic | 40.0% | |
| GTCTCACGAGTTACTAAAAC+GGG | + | chr4.1:58986423-58986442 | None:intergenic | 40.0% | |
| GTTAACCCGAGTTACTGAAA+TGG | + | chr4.1:58986393-58986412 | None:intergenic | 40.0% | |
| GTTACTACTGCTTGCATTTG+AGG | + | chr4.1:58985557-58985576 | None:intergenic | 40.0% | |
| TAAAATCCACGATCTTCGAG+TGG | - | chr4.1:58986274-58986293 | MS.gene74511:intron | 40.0% | |
| TACGATTAGTGTTGCCTTGA+AGG | - | chr4.1:58986185-58986204 | MS.gene74511:intron | 40.0% | |
| TCAATTCCAGAGGCCAAATT+TGG | + | chr4.1:58986622-58986641 | None:intergenic | 40.0% | |
| TGTTAAAAAGCCAACGGTTC+GGG | - | chr4.1:58985747-58985766 | MS.gene74511:CDS | 40.0% | |
| TTCTGTTCTGACAACTTCTG+AGG | + | chr4.1:58985721-58985740 | None:intergenic | 40.0% | |
| TTTCCTGTTGGGGAAAAATC+AGG | - | chr4.1:58987465-58987484 | MS.gene74511:CDS | 40.0% | |
| ! | ACAACTTTCTGGTCAGACAA+AGG | + | chr4.1:58987040-58987059 | None:intergenic | 40.0% |
| ! | CAAGCTTGTTTCAGAAATCG+CGG | - | chr4.1:58985510-58985529 | MS.gene74511:CDS | 40.0% |
| ! | GATATGTTGATGAAGGCAGT+GGG | - | chr4.1:58987492-58987511 | MS.gene74511:CDS | 40.0% |
| ! | GATGGAACGTTTTCAAATCG+TGG | - | chr4.1:58986356-58986375 | MS.gene74511:intron | 40.0% |
| ! | GTGTGGCATGTATCAGTTTT+TGG | - | chr4.1:58985973-58985992 | MS.gene74511:intron | 40.0% |
| ! | TGATATGTTGATGAAGGCAG+TGG | - | chr4.1:58987491-58987510 | MS.gene74511:CDS | 40.0% |
| !! | AGTTTTAACGTAGCAGAGCT+CGG | - | chr4.1:58986660-58986679 | MS.gene74511:intron | 40.0% |
| !! | ATTTGGCCTCTGGAATTGAA+TGG | - | chr4.1:58986623-58986642 | MS.gene74511:intron | 40.0% |
| !! | GGCCAAAGTTCCTTTTGAAA+AGG | - | chr4.1:58985768-58985787 | MS.gene74511:intron | 40.0% |
| !!! | GAGTTGATAGTTTTACCTCC+AGG | + | chr4.1:58987379-58987398 | None:intergenic | 40.0% |
| ACAGAATAACAGCACCTGCA+AGG | + | chr4.1:58985840-58985859 | None:intergenic | 45.0% | |
| AGCAAAGGACATCGCATTCA+AGG | + | chr4.1:58986749-58986768 | None:intergenic | 45.0% | |
| AGCTCTGCTAGTCACTCAAT+TGG | - | chr4.1:58986891-58986910 | MS.gene74511:intron | 45.0% | |
| CACTAGGGTGAAATCAACCT+TGG | + | chr4.1:58986726-58986745 | None:intergenic | 45.0% | |
| CCAGGGTGAAACGTCATATA+TGG | + | chr4.1:58987361-58987380 | None:intergenic | 45.0% | |
| CCATATATGACGTTTCACCC+TGG | - | chr4.1:58987358-58987377 | MS.gene74511:CDS | 45.0% | |
| CGAATCCTTAGCATCACTCT+TGG | + | chr4.1:58985698-58985717 | None:intergenic | 45.0% | |
| CTAGTCTCGAACAACTAACC+AGG | + | chr4.1:58986448-58986467 | None:intergenic | 45.0% | |
| CTTGCTCTCTGCTCCAAATT+TGG | - | chr4.1:58986606-58986625 | MS.gene74511:intron | 45.0% | |
| GGTGGTATCTTATGGAAGGA+TGG | - | chr4.1:58985586-58985605 | MS.gene74511:intron | 45.0% | |
| GTCTAAAAGGACAGTCGAAC+AGG | - | chr4.1:58987248-58987267 | MS.gene74511:CDS | 45.0% | |
| TAGTAACTCGTGAGACTTCC+TGG | - | chr4.1:58986427-58986446 | MS.gene74511:intron | 45.0% | |
| TATATGACGTTTCACCCTGG+AGG | - | chr4.1:58987361-58987380 | MS.gene74511:CDS | 45.0% | |
| TTCTACCACTGCAACCAGAA+TGG | + | chr4.1:58986306-58986325 | None:intergenic | 45.0% | |
| ! | ACACCTGATTTTTCCCCAAC+AGG | + | chr4.1:58987471-58987490 | None:intergenic | 45.0% |
| ! | ACATCGCATTCAAGGCACTA+GGG | + | chr4.1:58986741-58986760 | None:intergenic | 45.0% |
| ! | CAAATTTGGAGCAGAGAGCA+AGG | + | chr4.1:58986608-58986627 | None:intergenic | 45.0% |
| ! | CTGATTTAGGATTCTGGGTG+TGG | + | chr4.1:58986218-58986237 | None:intergenic | 45.0% |
| ! | TTCGACTGTCCTTTTAGACC+TGG | + | chr4.1:58987247-58987266 | None:intergenic | 45.0% |
| !! | CACTCTAGGGTTAGGAAAGA+TGG | - | chr4.1:58986338-58986357 | MS.gene74511:intron | 45.0% |
| !! | GTTTTAACGTAGCAGAGCTC+GGG | - | chr4.1:58986661-58986680 | MS.gene74511:intron | 45.0% |
| !!! | TTTTTTTTAATAAAACAATA+TGG | + | chr4.1:58985866-58985885 | None:intergenic | 5.0% |
| ATAACAGCACCTGCAAGGTC+AGG | + | chr4.1:58985835-58985854 | None:intergenic | 50.0% | |
| CAGAATCCACTCGAAGATCG+TGG | + | chr4.1:58986283-58986302 | None:intergenic | 50.0% | |
| GGTGTGGTCATGATCCTTCA+AGG | + | chr4.1:58986202-58986221 | None:intergenic | 50.0% | |
| TCTGCTCCAAATTTGGCCTC+TGG | - | chr4.1:58986613-58986632 | MS.gene74511:intron | 50.0% | |
| ! | AGCTTGTTTGTTTCCACCGC+AGG | + | chr4.1:58985496-58985515 | None:intergenic | 50.0% |
| ! | GACATCGCATTCAAGGCACT+AGG | + | chr4.1:58986742-58986761 | None:intergenic | 50.0% |
| ! | GGATGTGCTCTCCCTACTTT+TGG | - | chr4.1:58986863-58986882 | MS.gene74511:intron | 50.0% |
| ! | TCGAGTGGATTCTGCCATTC+TGG | - | chr4.1:58986289-58986308 | MS.gene74511:intron | 50.0% |
| ! | TTCTGCCATTCTGGTTGCAG+TGG | - | chr4.1:58986298-58986317 | MS.gene74511:intron | 50.0% |
| AAGGGGCGGGAGAAGAAACA+GGG | + | chr4.1:58986809-58986828 | None:intergenic | 55.0% | |
| CGAACTCATCCTGACCTTGC+AGG | - | chr4.1:58985823-58985842 | MS.gene74511:intron | 55.0% | |
| TAAGGGGCGGGAGAAGAAAC+AGG | + | chr4.1:58986810-58986829 | None:intergenic | 55.0% | |
| TGCAGTGGTAGAAGTCGCGA+CGG | - | chr4.1:58986313-58986332 | MS.gene74511:intron | 55.0% | |
| GGAACTTTGGCCCGAACCGT+TGG | + | chr4.1:58985760-58985779 | None:intergenic | 60.0% | |
| AAGTCGCGACGGCGCACTCT+AGG | - | chr4.1:58986324-58986343 | MS.gene74511:intron | 65.0% | |
| AGTCGCGACGGCGCACTCTA+GGG | - | chr4.1:58986325-58986344 | MS.gene74511:intron | 65.0% | |
| !! | CGACGGCGCACTCTAGGGTT+AGG | - | chr4.1:58986330-58986349 | MS.gene74511:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 58985484 | 58987537 | 58985484 | ID=MS.gene74511 |
| chr4.1 | mRNA | 58985484 | 58987537 | 58985484 | ID=MS.gene74511.t1;Parent=MS.gene74511 |
| chr4.1 | exon | 58987177 | 58987537 | 58987177 | ID=MS.gene74511.t1.exon1;Parent=MS.gene74511.t1 |
| chr4.1 | CDS | 58987177 | 58987537 | 58987177 | ID=cds.MS.gene74511.t1;Parent=MS.gene74511.t1 |
| chr4.1 | exon | 58985639 | 58985773 | 58985639 | ID=MS.gene74511.t1.exon2;Parent=MS.gene74511.t1 |
| chr4.1 | CDS | 58985639 | 58985773 | 58985639 | ID=cds.MS.gene74511.t1;Parent=MS.gene74511.t1 |
| chr4.1 | exon | 58985484 | 58985534 | 58985484 | ID=MS.gene74511.t1.exon3;Parent=MS.gene74511.t1 |
| chr4.1 | CDS | 58985484 | 58985534 | 58985484 | ID=cds.MS.gene74511.t1;Parent=MS.gene74511.t1 |
| Gene Sequence |
| Protein sequence |
