Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75179.t1 | XP_013470457.1 | 98.5 | 272 | 4 | 0 | 1 | 272 | 259 | 530 | 5.40E-162 | 580.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75179.t1 | A7WM73 | 73.5 | 272 | 72 | 0 | 1 | 272 | 264 | 535 | 4.7e-122 | 438.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75179.t1 | A0A072W2M8 | 98.5 | 272 | 4 | 0 | 1 | 272 | 259 | 530 | 3.9e-162 | 580.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049298 | MS.gene75179 | 0.871192 | 8.24E-67 | -1.69E-46 |
| MS.gene050710 | MS.gene75179 | 0.848819 | 4.81E-60 | -1.69E-46 |
| MS.gene050874 | MS.gene75179 | 0.803929 | 2.76E-49 | -1.69E-46 |
| MS.gene050875 | MS.gene75179 | 0.836496 | 9.04E-57 | -1.69E-46 |
| MS.gene051439 | MS.gene75179 | 0.823429 | 1.39E-53 | -1.69E-46 |
| MS.gene051552 | MS.gene75179 | 0.832035 | 1.19E-55 | -1.69E-46 |
| MS.gene051838 | MS.gene75179 | -0.825207 | 5.32E-54 | -1.69E-46 |
| MS.gene051914 | MS.gene75179 | 0.849983 | 2.28E-60 | -1.69E-46 |
| MS.gene052100 | MS.gene75179 | -0.806381 | 8.46E-50 | -1.69E-46 |
| MS.gene052169 | MS.gene75179 | 0.821881 | 3.19E-53 | -1.69E-46 |
| MS.gene052209 | MS.gene75179 | 0.831759 | 1.39E-55 | -1.69E-46 |
| MS.gene052308 | MS.gene75179 | 0.813316 | 2.72E-51 | -1.69E-46 |
| MS.gene052378 | MS.gene75179 | 0.803246 | 3.82E-49 | -1.69E-46 |
| MS.gene053108 | MS.gene75179 | 0.818263 | 2.15E-52 | -1.69E-46 |
| MS.gene053173 | MS.gene75179 | 0.800258 | 1.57E-48 | -1.69E-46 |
| MS.gene054551 | MS.gene75179 | 0.800034 | 1.74E-48 | -1.69E-46 |
| MS.gene054633 | MS.gene75179 | 0.818749 | 1.67E-52 | -1.69E-46 |
| MS.gene054662 | MS.gene75179 | 0.848714 | 5.14E-60 | -1.69E-46 |
| MS.gene054941 | MS.gene75179 | 0.877735 | 4.95E-69 | -1.69E-46 |
| MS.gene055158 | MS.gene75179 | 0.803932 | 2.75E-49 | -1.69E-46 |
| MS.gene056387 | MS.gene75179 | -0.840104 | 1.06E-57 | -1.69E-46 |
| MS.gene05652 | MS.gene75179 | 0.883414 | 4.58E-71 | -1.69E-46 |
| MS.gene056618 | MS.gene75179 | 0.819678 | 1.02E-52 | -1.69E-46 |
| MS.gene056678 | MS.gene75179 | 0.832499 | 9.13E-56 | -1.69E-46 |
| MS.gene056688 | MS.gene75179 | 0.828094 | 1.09E-54 | -1.69E-46 |
| MS.gene056694 | MS.gene75179 | 0.802796 | 4.73E-49 | -1.69E-46 |
| MS.gene056697 | MS.gene75179 | 0.811162 | 8.03E-51 | -1.69E-46 |
| MS.gene057356 | MS.gene75179 | 0.836093 | 1.15E-56 | -1.69E-46 |
| MS.gene057367 | MS.gene75179 | 0.827171 | 1.81E-54 | -1.69E-46 |
| MS.gene057669 | MS.gene75179 | 0.851792 | 7.04E-61 | -1.69E-46 |
| MS.gene057717 | MS.gene75179 | 0.843522 | 1.33E-58 | -1.69E-46 |
| MS.gene058128 | MS.gene75179 | 0.828434 | 9.01E-55 | -1.69E-46 |
| MS.gene058418 | MS.gene75179 | 0.857068 | 2.10E-62 | -1.69E-46 |
| MS.gene058853 | MS.gene75179 | 0.820073 | 8.32E-53 | -1.69E-46 |
| MS.gene05926 | MS.gene75179 | 0.868931 | 4.52E-66 | -1.69E-46 |
| MS.gene05960 | MS.gene75179 | 0.854607 | 1.10E-61 | -1.69E-46 |
| MS.gene059616 | MS.gene75179 | 0.858787 | 6.48E-63 | -1.69E-46 |
| MS.gene060291 | MS.gene75179 | 0.803214 | 3.88E-49 | -1.69E-46 |
| MS.gene06080 | MS.gene75179 | 0.81446 | 1.52E-51 | -1.69E-46 |
| MS.gene06093 | MS.gene75179 | 0.80285 | 4.61E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75179.t1 | MTR_1g115475 | 98.529 | 272 | 4 | 0 | 1 | 272 | 259 | 530 | 0.0 | 572 |
| MS.gene75179.t1 | MTR_7g023060 | 80.074 | 271 | 54 | 0 | 1 | 271 | 281 | 551 | 7.26e-170 | 481 |
| MS.gene75179.t1 | MTR_2g062560 | 29.487 | 312 | 165 | 9 | 2 | 260 | 241 | 550 | 1.24e-35 | 134 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75179.t1 | AT3G55260 | 73.529 | 272 | 72 | 0 | 1 | 272 | 264 | 535 | 1.60e-151 | 434 |
| MS.gene75179.t1 | AT1G65590 | 57.196 | 271 | 113 | 2 | 2 | 272 | 262 | 529 | 4.81e-112 | 333 |
| MS.gene75179.t1 | AT1G05590 | 29.022 | 317 | 175 | 7 | 2 | 269 | 252 | 567 | 2.40e-36 | 136 |
| MS.gene75179.t1 | AT1G05590 | 29.022 | 317 | 175 | 7 | 2 | 269 | 252 | 567 | 2.40e-36 | 136 |
| MS.gene75179.t1 | AT1G05590 | 29.022 | 317 | 175 | 7 | 2 | 269 | 252 | 567 | 2.40e-36 | 136 |
Find 71 sgRNAs with CRISPR-Local
Find 180 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTACCTTTGATGTCCTTTC+TGG | 0.128238 | 1.1:+81371054 | MS.gene75179:CDS |
| CGCGGACCGTTGTGCATAAC+TGG | 0.313587 | 1.1:+81372112 | MS.gene75179:CDS |
| CCCCTTTGAACTATTTCACT+TGG | 0.346201 | 1.1:+81371253 | MS.gene75179:CDS |
| TTACCAATACTTTGTATTGA+AGG | 0.374122 | 1.1:+81371919 | MS.gene75179:CDS |
| GCGTTGGATATCCTGATCTT+TGG | 0.391962 | 1.1:+81370989 | MS.gene75179:CDS |
| TGTTTCCAACAGAACGTTTG+TGG | 0.410377 | 1.1:+81372879 | MS.gene75179:intron |
| GACATCTGAAGTATTGCAAC+CGG | 0.410842 | 1.1:-81372952 | None:intergenic |
| TGCCCGAAGGTTGTTGCAAA+AGG | 0.416967 | 1.1:+81372236 | MS.gene75179:CDS |
| CAGATGTTCAGCAAACAATA+TGG | 0.417087 | 1.1:+81372426 | MS.gene75179:CDS |
| CCCAAGTGAAATAGTTCAAA+GGG | 0.430630 | 1.1:-81371254 | None:intergenic |
| AAGCATGAACCTGGACCATC+AGG | 0.433609 | 1.1:-81373034 | None:intergenic |
| GTCCTTTCTGGCATTATGAC+AGG | 0.436989 | 1.1:+81371066 | MS.gene75179:CDS |
| TTTGTTCACCTGAGTAGTAT+TGG | 0.441712 | 1.1:-81371586 | None:intergenic |
| AGTGAGAGACAATATACTTC+AGG | 0.448969 | 1.1:+81372902 | MS.gene75179:CDS |
| GGGCCTTCAATACAAAGTAT+TGG | 0.449716 | 1.1:-81371922 | None:intergenic |
| TATAATGCTGAGCCACTAGA+AGG | 0.465489 | 1.1:+81372329 | MS.gene75179:CDS |
| AAAACTGGAGTCCTGTCAAC+TGG | 0.465986 | 1.1:+81371963 | MS.gene75179:CDS |
| CCTCGCGCTGCAGCAGCAGC+AGG | 0.473773 | 1.1:+81372449 | MS.gene75179:CDS |
| CCCTTTGAACTATTTCACTT+GGG | 0.476591 | 1.1:+81371254 | MS.gene75179:CDS |
| AAATTTGTGACAGGAGCAGC+TGG | 0.478941 | 1.1:-81372995 | None:intergenic |
| TGACCATGTGGATGTACCTT+GGG | 0.487183 | 1.1:+81372298 | MS.gene75179:CDS |
| ATACTACTCAGGTGAACAAA+TGG | 0.488009 | 1.1:+81371589 | MS.gene75179:CDS |
| TACCATGATTCTGCATGACC+AGG | 0.490655 | 1.1:-81370516 | None:intergenic |
| TCCCTGGTCATGCAGAATCA+TGG | 0.492382 | 1.1:+81370514 | MS.gene75179:CDS |
| GTGGGCGATGGCCAAAGATC+AGG | 0.502649 | 1.1:-81371000 | None:intergenic |
| TTGTTTCTGTTTAGGGGCGT+TGG | 0.504304 | 1.1:+81370973 | MS.gene75179:intron |
| TATGCTAGAACTGCTCCTGA+TGG | 0.510462 | 1.1:+81373019 | MS.gene75179:CDS |
| CCTGCTGCTGCTGCAGCGCG+AGG | 0.521725 | 1.1:-81372449 | None:intergenic |
| AGAACTGCTCCTGATGGTCC+AGG | 0.525134 | 1.1:+81373025 | MS.gene75179:CDS |
| TAAAGATCATACCAGTTGAC+AGG | 0.534444 | 1.1:-81371974 | None:intergenic |
| TTTGAACTATTTCACTTGGG+TGG | 0.535975 | 1.1:+81371257 | MS.gene75179:CDS |
| GGGACCTGGTGTTTGCCCGA+AGG | 0.541881 | 1.1:+81372223 | MS.gene75179:CDS |
| TTGACCATGTGGATGTACCT+TGG | 0.557187 | 1.1:+81372297 | MS.gene75179:CDS |
| GATGTCTGTTGAATAGAAGA+GGG | 0.560221 | 1.1:+81372969 | MS.gene75179:CDS |
| TGTATTGAAGGCCCAAAACA+TGG | 0.563231 | 1.1:+81371931 | MS.gene75179:CDS |
| ATCTAGCGGGCTCCTACACG+TGG | 0.564253 | 1.1:-81371019 | None:intergenic |
| AACCTGTCATAATGCCAGAA+AGG | 0.564978 | 1.1:-81371068 | None:intergenic |
| AGATGTCTGTTGAATAGAAG+AGG | 0.570069 | 1.1:+81372968 | MS.gene75179:CDS |
| GGGCTCCTACACGTGGGCGA+TGG | 0.575538 | 1.1:-81371012 | None:intergenic |
| ACTTCTTTGAAACATCTAGC+GGG | 0.579209 | 1.1:-81371032 | None:intergenic |
| ACCCAAGTGAAATAGTTCAA+AGG | 0.579761 | 1.1:-81371255 | None:intergenic |
| TATGCACAACGGTCCGCGGG+TGG | 0.581028 | 1.1:-81372107 | None:intergenic |
| CATAAATGTGATGGCAGAAG+TGG | 0.583359 | 1.1:+81370488 | MS.gene75179:CDS |
| ATCAACAGGCATAAATGTGA+TGG | 0.584597 | 1.1:+81370479 | MS.gene75179:intron |
| AGTTATGCACAACGGTCCGC+GGG | 0.584649 | 1.1:-81372110 | None:intergenic |
| ACAACCTTCGGGCAAACACC+AGG | 0.584654 | 1.1:-81372227 | None:intergenic |
| TTGGAGGAGAAGTTTGCATG+TGG | 0.586395 | 1.1:+81372384 | MS.gene75179:CDS |
| TTTGGCCATCGCCCACGTGT+AGG | 0.588671 | 1.1:+81371007 | MS.gene75179:CDS |
| GTAACTCAACTGCATTATCC+CGG | 0.589174 | 1.1:+81372933 | MS.gene75179:CDS |
| GGTGGTGATGAAGTGAATAC+AGG | 0.590088 | 1.1:+81371275 | MS.gene75179:CDS |
| GCTTCATGTATTCCTTCTAG+TGG | 0.596470 | 1.1:-81372341 | None:intergenic |
| AGGTTGTTGCAAAAGGCTTG+AGG | 0.602167 | 1.1:+81372243 | MS.gene75179:CDS |
| CAGTTATGCACAACGGTCCG+CGG | 0.602889 | 1.1:-81372111 | None:intergenic |
| AATGCCAGAAAGGACATCAA+AGG | 0.612911 | 1.1:-81371058 | None:intergenic |
| TTGCTGGACCAATACTACTC+AGG | 0.616269 | 1.1:+81371578 | MS.gene75179:CDS |
| ACCATGATTCTGCATGACCA+GGG | 0.617592 | 1.1:-81370515 | None:intergenic |
| AACTTCTTTGAAACATCTAG+CGG | 0.621539 | 1.1:-81371033 | None:intergenic |
| TGGAGGAGAAGTTTGCATGT+GGG | 0.624933 | 1.1:+81372385 | MS.gene75179:CDS |
| ATGGCAGAAGTGGATGTCCC+TGG | 0.625492 | 1.1:+81370498 | MS.gene75179:CDS |
| GGTCAAGATACCATACACCT+TGG | 0.642283 | 1.1:-81372280 | None:intergenic |
| AATTACCGTAGGTTGGGACC+TGG | 0.647597 | 1.1:+81372209 | MS.gene75179:intron |
| GCATTATAGACAACATCCCA+AGG | 0.659122 | 1.1:-81372314 | None:intergenic |
| CATCCCAAGGTACATCCACA+TGG | 0.659431 | 1.1:-81372301 | None:intergenic |
| AGAGACAATATACTTCAGGT+AGG | 0.661319 | 1.1:+81372906 | MS.gene75179:CDS |
| TTCCAACAAAACTCCACCCG+CGG | 0.681078 | 1.1:+81372094 | MS.gene75179:CDS |
| ATGTCTGTTGAATAGAAGAG+GGG | 0.700200 | 1.1:+81372970 | MS.gene75179:CDS |
| ACATCTGAAGTATTGCAACC+GGG | 0.711438 | 1.1:-81372951 | None:intergenic |
| TGTATGGTATCTTGACCATG+TGG | 0.719486 | 1.1:+81372286 | MS.gene75179:CDS |
| CCAAGTGAAATAGTTCAAAG+GGG | 0.724638 | 1.1:-81371253 | None:intergenic |
| TCTAGCGGGCTCCTACACGT+GGG | 0.741821 | 1.1:-81371018 | None:intergenic |
| TATTCACCAGTTATGCACAA+CGG | 0.750495 | 1.1:-81372118 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATAATAAAAATGATTCTT+AGG | - | chr1.1:81371377-81371396 | None:intergenic | 10.0% |
| !! | TCATAATAAAAAATAGAAAT+TGG | + | chr1.1:81371481-81371500 | MS.gene75179:intron | 10.0% |
| !!! | ACTATTTAATTTAACTATAA+AGG | - | chr1.1:81372558-81372577 | None:intergenic | 10.0% |
| !!! | CTATTTAATTTAACTATAAA+GGG | - | chr1.1:81372557-81372576 | None:intergenic | 10.0% |
| !! | AAAGTTGGATTTAAAAAATA+TGG | - | chr1.1:81372037-81372056 | None:intergenic | 15.0% |
| !! | AATATCTGTAAATTTAGAAA+CGG | - | chr1.1:81371222-81371241 | None:intergenic | 15.0% |
| !! | ATTAAATAGTATAAAAGCAA+AGG | + | chr1.1:81372568-81372587 | MS.gene75179:intron | 15.0% |
| !!! | GTTATATATGTATACTTTTT+GGG | + | chr1.1:81372807-81372826 | MS.gene75179:intron | 15.0% |
| !!! | TAAAAGAAAAAGAAATTTTG+TGG | - | chr1.1:81370645-81370664 | None:intergenic | 15.0% |
| !!! | TGTTATATATGTATACTTTT+TGG | + | chr1.1:81372806-81372825 | MS.gene75179:intron | 15.0% |
| !!! | TTATATTTTGTTTCTGTTTA+GGG | + | chr1.1:81370966-81370985 | MS.gene75179:intron | 15.0% |
| !! | AATTTGAAAATAGTTATACC+TGG | + | chr1.1:81370615-81370634 | MS.gene75179:intron | 20.0% |
| !! | ATTATTAGTACAACTTAAGT+TGG | + | chr1.1:81371390-81371409 | MS.gene75179:intron | 20.0% |
| !! | GATAAGTTACATAAAAAAGT+TGG | - | chr1.1:81372052-81372071 | None:intergenic | 20.0% |
| !! | GTACATATTTCTTTCAATAA+AGG | + | chr1.1:81370859-81370878 | MS.gene75179:intron | 20.0% |
| !! | TATAACAACCTTAATATTTC+TGG | - | chr1.1:81370951-81370970 | None:intergenic | 20.0% |
| !! | TGTCAGTAGAAATAATAAAT+TGG | - | chr1.1:81370914-81370933 | None:intergenic | 20.0% |
| !!! | ACTTTTTTATGTAACTTATC+AGG | + | chr1.1:81372052-81372071 | MS.gene75179:intron | 20.0% |
| !!! | CTTTTTTATGTAACTTATCA+GGG | + | chr1.1:81372053-81372072 | MS.gene75179:intron | 20.0% |
| !!! | GTTATATTTTGTTTCTGTTT+AGG | + | chr1.1:81370965-81370984 | MS.gene75179:intron | 20.0% |
| !!! | TATATTTTGTTTCTGTTTAG+GGG | + | chr1.1:81370967-81370986 | MS.gene75179:intron | 20.0% |
| ! | AAAAATGATTCTTAGGACTT+AGG | - | chr1.1:81371370-81371389 | None:intergenic | 25.0% |
| ! | AAGAAAATGATAAAGTGAAG+AGG | - | chr1.1:81372785-81372804 | None:intergenic | 25.0% |
| ! | ATTGTACACCAGAAATATTA+AGG | + | chr1.1:81370940-81370959 | MS.gene75179:intron | 25.0% |
| ! | TACGACAATAATCAAATTCA+TGG | - | chr1.1:81371824-81371843 | None:intergenic | 25.0% |
| ! | TATGAAATAGAAGCTTCAAA+AGG | - | chr1.1:81370396-81370415 | None:intergenic | 25.0% |
| ! | TTACCAATACTTTGTATTGA+AGG | + | chr1.1:81371919-81371938 | MS.gene75179:CDS | 25.0% |
| ! | TTTAACGAATTTACAGTTCT+AGG | - | chr1.1:81371677-81371696 | None:intergenic | 25.0% |
| !! | TACAATGATGCATGTTTTAT+AGG | - | chr1.1:81371099-81371118 | None:intergenic | 25.0% |
| !! | TCATTTTCATTGATATGAAG+TGG | - | chr1.1:81371455-81371474 | None:intergenic | 25.0% |
| !!! | TTTTTATTTTGACAGATTGC+TGG | + | chr1.1:81371562-81371581 | MS.gene75179:intron | 25.0% |
| AAAAACCACATTCTATGTTG+AGG | - | chr1.1:81371742-81371761 | None:intergenic | 30.0% | |
| AATGAAAGTTTCTATTGCTG+TGG | + | chr1.1:81370453-81370472 | MS.gene75179:intron | 30.0% | |
| ATTCTTAGGACTTAGGTTAA+TGG | - | chr1.1:81371363-81371382 | None:intergenic | 30.0% | |
| CTAGCATAAAAATTTGTGAC+AGG | - | chr1.1:81373007-81373026 | None:intergenic | 30.0% | |
| CTTAAAGATTTCATGTCAAG+TGG | - | chr1.1:81371340-81371359 | None:intergenic | 30.0% | |
| GTAAGTTACAGAAAAAGACA+AGG | - | chr1.1:81371163-81371182 | None:intergenic | 30.0% | |
| GTATTTCATGTAATTACCGT+AGG | + | chr1.1:81372198-81372217 | MS.gene75179:intron | 30.0% | |
| TATTATTAGCGTCTATGTGT+CGG | - | chr1.1:81372654-81372673 | None:intergenic | 30.0% | |
| TGTGTACAGTTCAATATTTG+TGG | + | chr1.1:81372694-81372713 | MS.gene75179:intron | 30.0% | |
| ! | AAGAAATTTTGTGGTTTTCC+AGG | - | chr1.1:81370636-81370655 | None:intergenic | 30.0% |
| ! | TTCATCCATGTAGTTCATTT+TGG | + | chr1.1:81372141-81372160 | MS.gene75179:intron | 30.0% |
| ! | TTTTGTTGGAAACGTATTGA+AGG | - | chr1.1:81372085-81372104 | None:intergenic | 30.0% |
| !! | AACTTCTTTGAAACATCTAG+CGG | - | chr1.1:81371036-81371055 | None:intergenic | 30.0% |
| !! | ATGAAATGAATGAGTATCGA+AGG | - | chr1.1:81371627-81371646 | None:intergenic | 30.0% |
| !!! | CTTTTACAATTTGCTGTAAG+AGG | + | chr1.1:81370659-81370678 | MS.gene75179:intron | 30.0% |
| ACCCAAGTGAAATAGTTCAA+AGG | - | chr1.1:81371258-81371277 | None:intergenic | 35.0% | |
| AGAGACAATATACTTCAGGT+AGG | + | chr1.1:81372906-81372925 | MS.gene75179:CDS | 35.0% | |
| AGATGTCTGTTGAATAGAAG+AGG | + | chr1.1:81372968-81372987 | MS.gene75179:CDS | 35.0% | |
| AGTGAGAGACAATATACTTC+AGG | + | chr1.1:81372902-81372921 | MS.gene75179:CDS | 35.0% | |
| ATACTACTCAGGTGAACAAA+TGG | + | chr1.1:81371589-81371608 | MS.gene75179:CDS | 35.0% | |
| ATCAACAGGCATAAATGTGA+TGG | + | chr1.1:81370479-81370498 | MS.gene75179:intron | 35.0% | |
| ATGTCTATGTCACTGTTTCA+TGG | - | chr1.1:81372619-81372638 | None:intergenic | 35.0% | |
| ATGTCTGTTGAATAGAAGAG+GGG | + | chr1.1:81372970-81372989 | MS.gene75179:CDS | 35.0% | |
| CAACTTTCTCTTAACCTGAT+AGG | + | chr1.1:81370555-81370574 | MS.gene75179:intron | 35.0% | |
| CAGATGTTCAGCAAACAATA+TGG | + | chr1.1:81372426-81372445 | MS.gene75179:CDS | 35.0% | |
| CCAAGTGAAATAGTTCAAAG+GGG | - | chr1.1:81371256-81371275 | None:intergenic | 35.0% | |
| CCCAAGTGAAATAGTTCAAA+GGG | - | chr1.1:81371257-81371276 | None:intergenic | 35.0% | |
| CCCTTTGAACTATTTCACTT+GGG | + | chr1.1:81371254-81371273 | MS.gene75179:CDS | 35.0% | |
| CTTGTTGGATGAAATCAATG+CGG | - | chr1.1:81370779-81370798 | None:intergenic | 35.0% | |
| GACTGTCATATAATCCTATC+AGG | - | chr1.1:81370572-81370591 | None:intergenic | 35.0% | |
| GATGTCTGTTGAATAGAAGA+GGG | + | chr1.1:81372969-81372988 | MS.gene75179:CDS | 35.0% | |
| GTAAACCTCAACATAGAATG+TGG | + | chr1.1:81371734-81371753 | MS.gene75179:intron | 35.0% | |
| TAAAGATCATACCAGTTGAC+AGG | - | chr1.1:81371977-81371996 | None:intergenic | 35.0% | |
| TATTCACCAGTTATGCACAA+CGG | - | chr1.1:81372121-81372140 | None:intergenic | 35.0% | |
| TATTGCTGTGGTTTATCAAC+AGG | + | chr1.1:81370465-81370484 | MS.gene75179:intron | 35.0% | |
| TCAAGCACAATATTTAGACG+CGG | + | chr1.1:81371846-81371865 | MS.gene75179:intron | 35.0% | |
| TCATGTAATTACCGTAGGTT+GGG | + | chr1.1:81372203-81372222 | MS.gene75179:intron | 35.0% | |
| TCTGAACAAAAACTTGTGCT+TGG | + | chr1.1:81372365-81372384 | MS.gene75179:CDS | 35.0% | |
| TTATTGGGTGAAATCTATGC+AGG | + | chr1.1:81370712-81370731 | MS.gene75179:intron | 35.0% | |
| TTCATGTAATTACCGTAGGT+TGG | + | chr1.1:81372202-81372221 | MS.gene75179:intron | 35.0% | |
| TTGTTGGATGAAATCAATGC+GGG | - | chr1.1:81370778-81370797 | None:intergenic | 35.0% | |
| TTTACCTTTGATGTCCTTTC+TGG | + | chr1.1:81371054-81371073 | MS.gene75179:CDS | 35.0% | |
| TTTCATTGATATGAAGTGGC+AGG | - | chr1.1:81371451-81371470 | None:intergenic | 35.0% | |
| TTTGAACTATTTCACTTGGG+TGG | + | chr1.1:81371257-81371276 | MS.gene75179:CDS | 35.0% | |
| TTTGTTCACCTGAGTAGTAT+TGG | - | chr1.1:81371589-81371608 | None:intergenic | 35.0% | |
| ! | ACTAACACTCGGTCTTTTAT+TGG | + | chr1.1:81370696-81370715 | MS.gene75179:intron | 35.0% |
| ! | AGGTGTATTTTCAGTAACCA+AGG | + | chr1.1:81372263-81372282 | MS.gene75179:CDS | 35.0% |
| ! | ATCAAATTCATGGACTGTGA+TGG | - | chr1.1:81371814-81371833 | None:intergenic | 35.0% |
| ! | CTAACACTCGGTCTTTTATT+GGG | + | chr1.1:81370697-81370716 | MS.gene75179:intron | 35.0% |
| ! | GGAATGAGACTCAATTTTAC+AGG | - | chr1.1:81372536-81372555 | None:intergenic | 35.0% |
| ! | GGTTAAGAGAAAGTTGATCA+TGG | - | chr1.1:81370551-81370570 | None:intergenic | 35.0% |
| ! | TTTCGAAAGAGCCATGTTTT+GGG | - | chr1.1:81371945-81371964 | None:intergenic | 35.0% |
| ! | TTTCTTCTTTTGCCCATATC+CGG | + | chr1.1:81371765-81371784 | MS.gene75179:intron | 35.0% |
| ! | TTTGAGTTTCCTTTGCTTGA+CGG | - | chr1.1:81371701-81371720 | None:intergenic | 35.0% |
| ! | TTTTCAGTAACCAAGGTGTA+TGG | + | chr1.1:81372270-81372289 | MS.gene75179:CDS | 35.0% |
| ! | TTTTCGAAAGAGCCATGTTT+TGG | - | chr1.1:81371946-81371965 | None:intergenic | 35.0% |
| ! | TTTTCTGTAACTTTAGCCAC+CGG | - | chr1.1:81371787-81371806 | None:intergenic | 35.0% |
| !! | ACTTCTTTGAAACATCTAGC+GGG | - | chr1.1:81371035-81371054 | None:intergenic | 35.0% |
| AAAAGCAAAGGTCACGTGAA+AGG | + | chr1.1:81372580-81372599 | MS.gene75179:intron | 40.0% | |
| AAATATGTACCCTCCCAAAG+AGG | - | chr1.1:81370849-81370868 | None:intergenic | 40.0% | |
| AACCTGTCATAATGCCAGAA+AGG | - | chr1.1:81371071-81371090 | None:intergenic | 40.0% | |
| AATGCCAGAAAGGACATCAA+AGG | - | chr1.1:81371061-81371080 | None:intergenic | 40.0% | |
| ACATGGCTCTTTCGAAAAAC+TGG | + | chr1.1:81371948-81371967 | MS.gene75179:CDS | 40.0% | |
| AGGTCCCACACTTTGTAAAT+GGG | + | chr1.1:81370732-81370751 | MS.gene75179:intron | 40.0% | |
| AGTGACATAGACATGAACAC+CGG | + | chr1.1:81372625-81372644 | MS.gene75179:intron | 40.0% | |
| CATAAATGTGATGGCAGAAG+TGG | + | chr1.1:81370488-81370507 | MS.gene75179:CDS | 40.0% | |
| CCCCTTTGAACTATTTCACT+TGG | + | chr1.1:81371253-81371272 | MS.gene75179:CDS | 40.0% | |
| GAACAAAAACTTGTGCTTGG+AGG | + | chr1.1:81372368-81372387 | MS.gene75179:CDS | 40.0% | |
| GCATTATAGACAACATCCCA+AGG | - | chr1.1:81372317-81372336 | None:intergenic | 40.0% | |
| GCTTCATGTATTCCTTCTAG+TGG | - | chr1.1:81372344-81372363 | None:intergenic | 40.0% | |
| GGGCCTTCAATACAAAGTAT+TGG | - | chr1.1:81371925-81371944 | None:intergenic | 40.0% | |
| GTAACTCAACTGCATTATCC+CGG | + | chr1.1:81372933-81372952 | MS.gene75179:CDS | 40.0% | |
| GTCAATCTTGCCTTATGTAG+AGG | + | chr1.1:81372757-81372776 | MS.gene75179:intron | 40.0% | |
| TAACTTTAGCCACCGGATAT+GGG | - | chr1.1:81371780-81371799 | None:intergenic | 40.0% | |
| TATAATGCTGAGCCACTAGA+AGG | + | chr1.1:81372329-81372348 | MS.gene75179:CDS | 40.0% | |
| TCCAAAGTTGTTCGTCATTG+TGG | + | chr1.1:81372488-81372507 | MS.gene75179:intron | 40.0% | |
| TCGTGCCAAAATGAACTACA+TGG | - | chr1.1:81372149-81372168 | None:intergenic | 40.0% | |
| TCGTTAAATCCGTCAAGCAA+AGG | + | chr1.1:81371689-81371708 | MS.gene75179:intron | 40.0% | |
| TCTAACACTCACTCTCTTGT+TGG | - | chr1.1:81370794-81370813 | None:intergenic | 40.0% | |
| TGTATGGTATCTTGACCATG+TGG | + | chr1.1:81372286-81372305 | MS.gene75179:CDS | 40.0% | |
| TGTATTGAAGGCCCAAAACA+TGG | + | chr1.1:81371931-81371950 | MS.gene75179:CDS | 40.0% | |
| TGTTCTTAGCACTCCTCTTT+GGG | + | chr1.1:81370833-81370852 | MS.gene75179:intron | 40.0% | |
| TGTTTCCAACAGAACGTTTG+TGG | + | chr1.1:81372879-81372898 | MS.gene75179:intron | 40.0% | |
| ! | AAGCCTTTTGCAACAACCTT+CGG | - | chr1.1:81372242-81372261 | None:intergenic | 40.0% |
| ! | AGTGCATAAGTTGAAGAAGC+AGG | - | chr1.1:81371139-81371158 | None:intergenic | 40.0% |
| ! | GTGCATAAGTTGAAGAAGCA+GGG | - | chr1.1:81371138-81371157 | None:intergenic | 40.0% |
| ! | TGGAAGACTCGACTTTTCTA+TGG | - | chr1.1:81370894-81370913 | None:intergenic | 40.0% |
| !! | ACATCTGAAGTATTGCAACC+GGG | - | chr1.1:81372954-81372973 | None:intergenic | 40.0% |
| !! | ACTTTTTGGGAAGATGAGTG+AGG | + | chr1.1:81372820-81372839 | MS.gene75179:intron | 40.0% |
| !! | AGCATCGATTTGACACAAAG+TGG | - | chr1.1:81371525-81371544 | None:intergenic | 40.0% |
| !! | GACATCTGAAGTATTGCAAC+CGG | - | chr1.1:81372955-81372974 | None:intergenic | 40.0% |
| AAAACTGGAGTCCTGTCAAC+TGG | + | chr1.1:81371963-81371982 | MS.gene75179:CDS | 45.0% | |
| AAATTTGTGACAGGAGCAGC+TGG | - | chr1.1:81372998-81373017 | None:intergenic | 45.0% | |
| ACCATGATTCTGCATGACCA+GGG | - | chr1.1:81370518-81370537 | None:intergenic | 45.0% | |
| AGGTTGTTGCAAAAGGCTTG+AGG | + | chr1.1:81372243-81372262 | MS.gene75179:CDS | 45.0% | |
| CAGGTCCCACACTTTGTAAA+TGG | + | chr1.1:81370731-81370750 | MS.gene75179:intron | 45.0% | |
| GCCACAATGACGAACAACTT+TGG | - | chr1.1:81372492-81372511 | None:intergenic | 45.0% | |
| GCGTTGGATATCCTGATCTT+TGG | + | chr1.1:81370989-81371008 | MS.gene75179:CDS | 45.0% | |
| GGGACCCATTTACAAAGTGT+GGG | - | chr1.1:81370739-81370758 | None:intergenic | 45.0% | |
| GGTCAAGATACCATACACCT+TGG | - | chr1.1:81372283-81372302 | None:intergenic | 45.0% | |
| GTAACTTTAGCCACCGGATA+TGG | - | chr1.1:81371781-81371800 | None:intergenic | 45.0% | |
| GTGTTCTTAGCACTCCTCTT+TGG | + | chr1.1:81370832-81370851 | MS.gene75179:intron | 45.0% | |
| TAAATGGGTCCCACGTATAG+TGG | + | chr1.1:81370747-81370766 | MS.gene75179:intron | 45.0% | |
| TACCATGATTCTGCATGACC+AGG | - | chr1.1:81370519-81370538 | None:intergenic | 45.0% | |
| TATGCTAGAACTGCTCCTGA+TGG | + | chr1.1:81373019-81373038 | MS.gene75179:CDS | 45.0% | |
| TCACTCCACAAACGTTCTGT+TGG | - | chr1.1:81372887-81372906 | None:intergenic | 45.0% | |
| TGACCATGTGGATGTACCTT+GGG | + | chr1.1:81372298-81372317 | MS.gene75179:CDS | 45.0% | |
| TGGAGGAGAAGTTTGCATGT+GGG | + | chr1.1:81372385-81372404 | MS.gene75179:CDS | 45.0% | |
| TGGGACCCATTTACAAAGTG+TGG | - | chr1.1:81370740-81370759 | None:intergenic | 45.0% | |
| TGTCACTGTTTCATGGCACA+AGG | - | chr1.1:81372612-81372631 | None:intergenic | 45.0% | |
| TTGACCATGTGGATGTACCT+TGG | + | chr1.1:81372297-81372316 | MS.gene75179:CDS | 45.0% | |
| TTGCTGGACCAATACTACTC+AGG | + | chr1.1:81371578-81371597 | MS.gene75179:CDS | 45.0% | |
| TTGGAGGAGAAGTTTGCATG+TGG | + | chr1.1:81372384-81372403 | MS.gene75179:CDS | 45.0% | |
| ! | AGCCTTTTGCAACAACCTTC+GGG | - | chr1.1:81372241-81372260 | None:intergenic | 45.0% |
| ! | GGTGGTGATGAAGTGAATAC+AGG | + | chr1.1:81371275-81371294 | MS.gene75179:CDS | 45.0% |
| ! | GTCCTTTCTGGCATTATGAC+AGG | + | chr1.1:81371066-81371085 | MS.gene75179:CDS | 45.0% |
| !! | TGAAGAGGCACCTCTACATA+AGG | - | chr1.1:81372770-81372789 | None:intergenic | 45.0% |
| !! | TGTGATTCTGAAGCCTGCAT+TGG | - | chr1.1:81371880-81371899 | None:intergenic | 45.0% |
| !! | TTGTTTCTGTTTAGGGGCGT+TGG | + | chr1.1:81370973-81370992 | MS.gene75179:intron | 45.0% |
| !! | TTTGCTGTAAGAGGAGTGCT+AGG | + | chr1.1:81370668-81370687 | MS.gene75179:intron | 45.0% |
| AAACACCAGGTCCCAACCTA+CGG | - | chr1.1:81372217-81372236 | None:intergenic | 50.0% | |
| CATCCCAAGGTACATCCACA+TGG | - | chr1.1:81372304-81372323 | None:intergenic | 50.0% | |
| CGCGGTTATATCTCCAATGC+AGG | + | chr1.1:81371864-81371883 | MS.gene75179:intron | 50.0% | |
| CGGGTCTTACCACTATACGT+GGG | - | chr1.1:81370759-81370778 | None:intergenic | 50.0% | |
| GCTAGGAACGCACTAACACT+CGG | + | chr1.1:81370685-81370704 | MS.gene75179:intron | 50.0% | |
| TCCCTGGTCATGCAGAATCA+TGG | + | chr1.1:81370514-81370533 | MS.gene75179:CDS | 50.0% | |
| TCTTAGCACTCCTCTTTGGG+AGG | + | chr1.1:81370836-81370855 | MS.gene75179:intron | 50.0% | |
| TGCCCGAAGGTTGTTGCAAA+AGG | + | chr1.1:81372236-81372255 | MS.gene75179:CDS | 50.0% | |
| TTCCAACAAAACTCCACCCG+CGG | + | chr1.1:81372094-81372113 | MS.gene75179:CDS | 50.0% | |
| ! | AATTACCGTAGGTTGGGACC+TGG | + | chr1.1:81372209-81372228 | MS.gene75179:intron | 50.0% |
| ! | CTTAGCACTCCTCTTTGGGA+GGG | + | chr1.1:81370837-81370856 | MS.gene75179:intron | 50.0% |
| ! | CTTCTTTTGCCCATATCCGG+TGG | + | chr1.1:81371768-81371787 | MS.gene75179:intron | 50.0% |
| ACAACCTTCGGGCAAACACC+AGG | - | chr1.1:81372230-81372249 | None:intergenic | 55.0% | |
| AGTTATGCACAACGGTCCGC+GGG | - | chr1.1:81372113-81372132 | None:intergenic | 55.0% | |
| ATGGCAGAAGTGGATGTCCC+TGG | + | chr1.1:81370498-81370517 | MS.gene75179:CDS | 55.0% | |
| CAGTTATGCACAACGGTCCG+CGG | - | chr1.1:81372114-81372133 | None:intergenic | 55.0% | |
| GCGGGTCTTACCACTATACG+TGG | - | chr1.1:81370760-81370779 | None:intergenic | 55.0% | |
| ! | AGCGTCTATGTGTCGGTGTC+CGG | - | chr1.1:81372647-81372666 | None:intergenic | 55.0% |
| CGCGGACCGTTGTGCATAAC+TGG | + | chr1.1:81372112-81372131 | MS.gene75179:CDS | 60.0% | |
| GTGGGCGATGGCCAAAGATC+AGG | - | chr1.1:81371003-81371022 | None:intergenic | 60.0% | |
| TTTGGCCATCGCCCACGTGT+AGG | + | chr1.1:81371007-81371026 | MS.gene75179:CDS | 60.0% | |
| !! | ATCTAGCGGGCTCCTACACG+TGG | - | chr1.1:81371022-81371041 | None:intergenic | 60.0% |
| !! | GTCCGCGGGTGGAGTTTTGT+TGG | - | chr1.1:81372099-81372118 | None:intergenic | 60.0% |
| !! | TCTAGCGGGCTCCTACACGT+GGG | - | chr1.1:81371021-81371040 | None:intergenic | 60.0% |
| GGGACCTGGTGTTTGCCCGA+AGG | + | chr1.1:81372223-81372242 | MS.gene75179:CDS | 65.0% | |
| TATGCACAACGGTCCGCGGG+TGG | - | chr1.1:81372110-81372129 | None:intergenic | 65.0% | |
| GGGCTCCTACACGTGGGCGA+TGG | - | chr1.1:81371015-81371034 | None:intergenic | 70.0% | |
| CCTCGCGCTGCAGCAGCAGC+AGG | + | chr1.1:81372449-81372468 | MS.gene75179:CDS | 75.0% | |
| CCTGCTGCTGCTGCAGCGCG+AGG | - | chr1.1:81372452-81372471 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 81370368 | 81373046 | 81370368 | ID=MS.gene75179 |
| chr1.1 | mRNA | 81370368 | 81373046 | 81370368 | ID=MS.gene75179.t1;Parent=MS.gene75179 |
| chr1.1 | exon | 81370368 | 81370374 | 81370368 | ID=MS.gene75179.t1.exon1;Parent=MS.gene75179.t1 |
| chr1.1 | CDS | 81370368 | 81370374 | 81370368 | ID=cds.MS.gene75179.t1;Parent=MS.gene75179.t1 |
| chr1.1 | exon | 81370487 | 81370535 | 81370487 | ID=MS.gene75179.t1.exon2;Parent=MS.gene75179.t1 |
| chr1.1 | CDS | 81370487 | 81370535 | 81370487 | ID=cds.MS.gene75179.t1;Parent=MS.gene75179.t1 |
| chr1.1 | exon | 81370987 | 81371087 | 81370987 | ID=MS.gene75179.t1.exon3;Parent=MS.gene75179.t1 |
| chr1.1 | CDS | 81370987 | 81371087 | 81370987 | ID=cds.MS.gene75179.t1;Parent=MS.gene75179.t1 |
| chr1.1 | exon | 81371237 | 81371296 | 81371237 | ID=MS.gene75179.t1.exon4;Parent=MS.gene75179.t1 |
| chr1.1 | CDS | 81371237 | 81371296 | 81371237 | ID=cds.MS.gene75179.t1;Parent=MS.gene75179.t1 |
| chr1.1 | exon | 81371577 | 81371610 | 81371577 | ID=MS.gene75179.t1.exon5;Parent=MS.gene75179.t1 |
| chr1.1 | CDS | 81371577 | 81371610 | 81371577 | ID=cds.MS.gene75179.t1;Parent=MS.gene75179.t1 |
| chr1.1 | exon | 81371886 | 81371984 | 81371886 | ID=MS.gene75179.t1.exon6;Parent=MS.gene75179.t1 |
| chr1.1 | CDS | 81371886 | 81371984 | 81371886 | ID=cds.MS.gene75179.t1;Parent=MS.gene75179.t1 |
| chr1.1 | exon | 81372074 | 81372133 | 81372074 | ID=MS.gene75179.t1.exon7;Parent=MS.gene75179.t1 |
| chr1.1 | CDS | 81372074 | 81372133 | 81372074 | ID=cds.MS.gene75179.t1;Parent=MS.gene75179.t1 |
| chr1.1 | exon | 81372220 | 81372470 | 81372220 | ID=MS.gene75179.t1.exon8;Parent=MS.gene75179.t1 |
| chr1.1 | CDS | 81372220 | 81372470 | 81372220 | ID=cds.MS.gene75179.t1;Parent=MS.gene75179.t1 |
| chr1.1 | exon | 81372891 | 81373046 | 81372891 | ID=MS.gene75179.t1.exon9;Parent=MS.gene75179.t1 |
| chr1.1 | CDS | 81372891 | 81373046 | 81372891 | ID=cds.MS.gene75179.t1;Parent=MS.gene75179.t1 |
| Gene Sequence |
| Protein sequence |
