Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene77647.t1 | ABN08200.1 | 81.9 | 441 | 20 | 3 | 245 | 625 | 173 | 613 | 2.30E-184 | 655.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene77647.t1 | O23708 | 94.4 | 231 | 13 | 0 | 1 | 231 | 1 | 231 | 2.5e-118 | 427.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene77647.t1 | G7IT31 | 81.9 | 441 | 20 | 3 | 245 | 625 | 304 | 744 | 1.7e-184 | 655.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049178 | MS.gene77647 | 0.800778 | 1.23E-48 | -1.69E-46 |
MS.gene049756 | MS.gene77647 | 0.809191 | 2.14E-50 | -1.69E-46 |
MS.gene050114 | MS.gene77647 | 0.817835 | 2.68E-52 | -1.69E-46 |
MS.gene050317 | MS.gene77647 | 0.803267 | 3.78E-49 | -1.69E-46 |
MS.gene050359 | MS.gene77647 | 0.822637 | 2.13E-53 | -1.69E-46 |
MS.gene050439 | MS.gene77647 | 0.802329 | 5.91E-49 | -1.69E-46 |
MS.gene050838 | MS.gene77647 | 0.816682 | 4.88E-52 | -1.69E-46 |
MS.gene051102 | MS.gene77647 | 0.81284 | 3.46E-51 | -1.69E-46 |
MS.gene051748 | MS.gene77647 | 0.811527 | 6.70E-51 | -1.69E-46 |
MS.gene051756 | MS.gene77647 | 0.817787 | 2.75E-52 | -1.69E-46 |
MS.gene051757 | MS.gene77647 | 0.806071 | 9.83E-50 | -1.69E-46 |
MS.gene052242 | MS.gene77647 | -0.816148 | 6.42E-52 | -1.69E-46 |
MS.gene052609 | MS.gene77647 | 0.808253 | 3.39E-50 | -1.69E-46 |
MS.gene052856 | MS.gene77647 | 0.804251 | 2.36E-49 | -1.69E-46 |
MS.gene052932 | MS.gene77647 | 0.815952 | 7.10E-52 | -1.69E-46 |
MS.gene053167 | MS.gene77647 | 0.814643 | 1.39E-51 | -1.69E-46 |
MS.gene053564 | MS.gene77647 | 0.801093 | 1.06E-48 | -1.69E-46 |
MS.gene05380 | MS.gene77647 | 0.802812 | 4.70E-49 | -1.69E-46 |
MS.gene053952 | MS.gene77647 | 0.806423 | 8.29E-50 | -1.69E-46 |
MS.gene055311 | MS.gene77647 | 0.825294 | 5.07E-54 | -1.69E-46 |
MS.gene055313 | MS.gene77647 | 0.810865 | 9.32E-51 | -1.69E-46 |
MS.gene055314 | MS.gene77647 | 0.808317 | 3.29E-50 | -1.69E-46 |
MS.gene055441 | MS.gene77647 | 0.807574 | 4.73E-50 | -1.69E-46 |
MS.gene056181 | MS.gene77647 | 0.812513 | 4.08E-51 | -1.69E-46 |
MS.gene056787 | MS.gene77647 | 0.821336 | 4.26E-53 | -1.69E-46 |
MS.gene057094 | MS.gene77647 | 0.810938 | 8.99E-51 | -1.69E-46 |
MS.gene057234 | MS.gene77647 | 0.805551 | 1.26E-49 | -1.69E-46 |
MS.gene057360 | MS.gene77647 | 0.820378 | 7.08E-53 | -1.69E-46 |
MS.gene058055 | MS.gene77647 | 0.804507 | 2.09E-49 | -1.69E-46 |
MS.gene058638 | MS.gene77647 | 0.827169 | 1.82E-54 | -1.69E-46 |
MS.gene058639 | MS.gene77647 | 0.834894 | 2.30E-56 | -1.69E-46 |
MS.gene058758 | MS.gene77647 | 0.842215 | 2.96E-58 | -1.69E-46 |
MS.gene058906 | MS.gene77647 | 0.826301 | 2.92E-54 | -1.69E-46 |
MS.gene059171 | MS.gene77647 | 0.827326 | 1.66E-54 | -1.69E-46 |
MS.gene06001 | MS.gene77647 | 0.803513 | 3.36E-49 | -1.69E-46 |
MS.gene060400 | MS.gene77647 | 0.822828 | 1.92E-53 | -1.69E-46 |
MS.gene060869 | MS.gene77647 | 0.808897 | 2.47E-50 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene77647.t1 | MTR_2g062790 | 81.674 | 442 | 21 | 3 | 244 | 625 | 303 | 744 | 0.0 | 686 |
MS.gene77647.t1 | MTR_1g057830 | 79.096 | 354 | 48 | 3 | 295 | 625 | 14 | 364 | 3.93e-175 | 501 |
MS.gene77647.t1 | MTR_0167s0060 | 99.145 | 234 | 2 | 0 | 1 | 234 | 1 | 234 | 4.25e-166 | 473 |
MS.gene77647.t1 | MTR_2g060830 | 38.298 | 235 | 140 | 4 | 6 | 235 | 9 | 243 | 8.28e-48 | 168 |
MS.gene77647.t1 | MTR_8g075320 | 38.767 | 227 | 134 | 3 | 4 | 228 | 2 | 225 | 9.69e-48 | 168 |
MS.gene77647.t1 | MTR_7g070070 | 36.752 | 234 | 141 | 4 | 5 | 231 | 4 | 237 | 4.50e-45 | 160 |
MS.gene77647.t1 | MTR_8g464460 | 38.298 | 235 | 140 | 4 | 6 | 235 | 9 | 243 | 2.05e-44 | 159 |
MS.gene77647.t1 | MTR_5g016590 | 36.325 | 234 | 142 | 4 | 5 | 231 | 4 | 237 | 3.37e-44 | 158 |
MS.gene77647.t1 | MTR_1g112250 | 35.526 | 228 | 142 | 2 | 4 | 228 | 6 | 231 | 9.09e-44 | 157 |
MS.gene77647.t1 | MTR_2g016050 | 37.445 | 227 | 137 | 3 | 4 | 228 | 2 | 225 | 1.67e-42 | 154 |
MS.gene77647.t1 | MTR_1g022410 | 33.891 | 239 | 153 | 3 | 1 | 236 | 1 | 237 | 1.04e-38 | 144 |
MS.gene77647.t1 | MTR_3g087350 | 34.831 | 267 | 121 | 5 | 357 | 622 | 451 | 665 | 8.08e-37 | 148 |
MS.gene77647.t1 | MTR_3g087350 | 27.869 | 427 | 217 | 13 | 249 | 619 | 946 | 1337 | 1.57e-30 | 128 |
MS.gene77647.t1 | MTR_6g024135 | 36.612 | 183 | 116 | 0 | 6 | 188 | 8 | 190 | 4.97e-36 | 136 |
MS.gene77647.t1 | MTR_4g012740 | 27.698 | 278 | 156 | 6 | 1 | 236 | 232 | 506 | 3.66e-24 | 107 |
MS.gene77647.t1 | MTR_4g057090 | 29.032 | 217 | 142 | 7 | 9 | 218 | 91 | 302 | 4.62e-14 | 74.3 |
MS.gene77647.t1 | MTR_3g113730 | 30.508 | 118 | 79 | 2 | 122 | 236 | 6 | 123 | 9.46e-13 | 67.0 |
MS.gene77647.t1 | MTR_6g013300 | 28.571 | 189 | 123 | 4 | 32 | 214 | 136 | 318 | 9.56e-13 | 70.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene77647.t1 | AT1G16470 | 94.372 | 231 | 13 | 0 | 1 | 231 | 1 | 231 | 6.49e-156 | 447 |
MS.gene77647.t1 | AT1G16470 | 94.372 | 231 | 13 | 0 | 1 | 231 | 1 | 231 | 6.49e-156 | 447 |
MS.gene77647.t1 | AT1G79210 | 93.506 | 231 | 15 | 0 | 1 | 231 | 1 | 231 | 1.05e-154 | 444 |
MS.gene77647.t1 | AT1G79210 | 93.506 | 231 | 15 | 0 | 1 | 231 | 1 | 231 | 1.05e-154 | 444 |
MS.gene77647.t1 | AT1G79210 | 93.506 | 231 | 15 | 0 | 1 | 231 | 1 | 231 | 1.05e-154 | 444 |
MS.gene77647.t1 | AT1G54350 | 51.584 | 442 | 138 | 9 | 244 | 623 | 266 | 693 | 7.39e-133 | 405 |
MS.gene77647.t1 | AT5G66140 | 39.035 | 228 | 133 | 4 | 4 | 228 | 2 | 226 | 6.41e-46 | 163 |
MS.gene77647.t1 | AT3G51260 | 38.596 | 228 | 134 | 4 | 4 | 228 | 2 | 226 | 7.30e-45 | 160 |
MS.gene77647.t1 | AT3G51260 | 39.623 | 212 | 123 | 3 | 4 | 213 | 2 | 210 | 1.14e-44 | 159 |
MS.gene77647.t1 | AT1G53850 | 35.526 | 228 | 142 | 2 | 4 | 228 | 6 | 231 | 8.43e-44 | 157 |
MS.gene77647.t1 | AT1G53850 | 35.526 | 228 | 142 | 2 | 4 | 228 | 6 | 231 | 8.43e-44 | 157 |
MS.gene77647.t1 | AT5G35590 | 36.596 | 235 | 144 | 4 | 6 | 235 | 9 | 243 | 9.72e-44 | 157 |
MS.gene77647.t1 | AT3G14290 | 35.526 | 228 | 142 | 2 | 4 | 228 | 6 | 231 | 1.53e-43 | 156 |
MS.gene77647.t1 | AT3G22110 | 36.245 | 229 | 136 | 4 | 5 | 230 | 4 | 225 | 1.17e-42 | 154 |
MS.gene77647.t1 | AT2G05840 | 35.319 | 235 | 147 | 4 | 6 | 235 | 9 | 243 | 4.40e-41 | 150 |
MS.gene77647.t1 | AT5G42790 | 35.745 | 235 | 146 | 3 | 1 | 232 | 1 | 233 | 6.34e-39 | 145 |
MS.gene77647.t1 | AT1G47250 | 34.468 | 235 | 149 | 3 | 1 | 232 | 1 | 233 | 1.67e-37 | 141 |
MS.gene77647.t1 | AT4G39850 | 34.351 | 262 | 121 | 5 | 362 | 623 | 457 | 667 | 6.25e-36 | 145 |
MS.gene77647.t1 | AT4G39850 | 34.375 | 288 | 158 | 7 | 323 | 608 | 1085 | 1343 | 6.01e-33 | 136 |
MS.gene77647.t1 | AT4G39850 | 34.351 | 262 | 121 | 5 | 362 | 623 | 457 | 667 | 6.27e-36 | 145 |
MS.gene77647.t1 | AT4G39850 | 34.375 | 288 | 158 | 7 | 323 | 608 | 1071 | 1329 | 6.25e-33 | 136 |
MS.gene77647.t1 | AT4G39850 | 34.351 | 262 | 121 | 5 | 362 | 623 | 457 | 667 | 6.55e-36 | 145 |
MS.gene77647.t1 | AT4G39850 | 29.684 | 411 | 208 | 12 | 249 | 608 | 948 | 1328 | 1.63e-33 | 137 |
MS.gene77647.t1 | AT4G39850 | 34.351 | 262 | 121 | 5 | 362 | 623 | 457 | 667 | 6.55e-36 | 145 |
MS.gene77647.t1 | AT4G39850 | 29.684 | 411 | 208 | 12 | 249 | 608 | 948 | 1328 | 1.63e-33 | 137 |
MS.gene77647.t1 | AT2G05840 | 34.928 | 209 | 132 | 3 | 6 | 210 | 9 | 217 | 2.74e-35 | 133 |
MS.gene77647.t1 | AT2G27020 | 34.426 | 183 | 120 | 0 | 6 | 188 | 8 | 190 | 1.97e-33 | 129 |
MS.gene77647.t1 | AT2G27020 | 32.710 | 214 | 143 | 1 | 6 | 218 | 110 | 323 | 1.75e-32 | 129 |
MS.gene77647.t1 | AT2G05840 | 35.955 | 178 | 112 | 2 | 6 | 181 | 9 | 186 | 2.79e-32 | 124 |
MS.gene77647.t1 | AT4G15165 | 26.754 | 228 | 117 | 4 | 5 | 230 | 4 | 183 | 1.97e-21 | 93.2 |
Find 128 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGCTGAAATTGATGATTATT+TGG | 0.158426 | 2.3:-29628171 | MS.gene77647:CDS |
GCTGAATCAATTGCTTTCTA+TGG | 0.172565 | 2.3:-29626575 | MS.gene77647:CDS |
TAAATCTCTCTCTGATTCTT+TGG | 0.242015 | 2.3:-29624975 | MS.gene77647:CDS |
GGAGTGTCCCTGCTTGTTGC+TGG | 0.253157 | 2.3:-29630217 | MS.gene77647:CDS |
CTAACAACCTTTAGTCCTTC+TGG | 0.260202 | 2.3:-29634195 | MS.gene77647:CDS |
TCAAAAGCCATACATGGTTT+TGG | 0.263760 | 2.3:-29624509 | MS.gene77647:CDS |
GCTTTAACTGCTGTTGGTTC+TGG | 0.266268 | 2.3:-29634150 | MS.gene77647:CDS |
GAAACCTCAACTGGCTCTAT+TGG | 0.273336 | 2.3:-29622754 | MS.gene77647:CDS |
AGTGGCAAAACATCTTTATT+AGG | 0.286339 | 2.3:-29624697 | MS.gene77647:CDS |
GGGTCCTGATTTCCGAGTTT+TGG | 0.297847 | 2.3:-29631475 | MS.gene77647:CDS |
CAAACAATGAACAGCCAAAT+TGG | 0.304874 | 2.3:-29622262 | MS.gene77647:CDS |
AACATCTTTATTAGGAGTTA+TGG | 0.315000 | 2.3:-29624689 | MS.gene77647:CDS |
CTGTATACAACACCTATATT+TGG | 0.326037 | 2.3:+29632214 | None:intergenic |
ACCGATTTCTTCGAGAAATC+TGG | 0.329950 | 2.3:-29626168 | MS.gene77647:CDS |
CCCTTCCTTCAGTGTCAATA+TGG | 0.330202 | 2.3:+29629695 | None:intergenic |
TCACATATATGTCCCCATTA+TGG | 0.332892 | 2.3:-29626620 | MS.gene77647:CDS |
GAAGAAACTGCCATCTATAT+TGG | 0.337394 | 2.3:-29632687 | MS.gene77647:CDS |
TAGGAGTTATGGCTGGTCTA+TGG | 0.340613 | 2.3:-29624678 | MS.gene77647:CDS |
AAGATCATATACTATGTTAA+AGG | 0.343065 | 2.3:-29624640 | MS.gene77647:CDS |
GATAGTGGTGTTAGGCCATT+TGG | 0.346954 | 2.3:-29630238 | MS.gene77647:intron |
GTTGCTGGGTTTGATGATAA+TGG | 0.347033 | 2.3:-29630202 | MS.gene77647:CDS |
ATGGTCTAGTGTTCTCTCTC+TGG | 0.347611 | 2.3:-29622817 | MS.gene77647:CDS |
ATGCAGGAATTTACTCAGTC+TGG | 0.352073 | 2.3:-29630921 | MS.gene77647:CDS |
GTGGGTTCGATGCGCCAATT+TGG | 0.355019 | 2.3:+29622248 | None:intergenic |
AGGTGAATTTGATGATCTTT+TGG | 0.356159 | 2.3:-29625011 | MS.gene77647:CDS |
AACCCGTACAAGTCCATAAT+GGG | 0.356477 | 2.3:+29626607 | None:intergenic |
TTTGCCCTGATAGTGGTGTT+AGG | 0.363096 | 2.3:-29630246 | MS.gene77647:intron |
GAACCCGTACAAGTCCATAA+TGG | 0.364987 | 2.3:+29626606 | None:intergenic |
CTTACATATTGCCTCGATTC+GGG | 0.368192 | 2.3:-29622857 | MS.gene77647:CDS |
AACATTGAAATCGGCATCAT+TGG | 0.369450 | 2.3:-29629115 | MS.gene77647:CDS |
AACAATTACTTTATCCAACT+TGG | 0.371885 | 2.3:-29624474 | MS.gene77647:CDS |
TGTTGCTCCCATGTATTTCT+CGG | 0.374907 | 2.3:-29626093 | MS.gene77647:CDS |
TTGTAGATACACTGATGATA+TGG | 0.375486 | 2.3:-29629742 | MS.gene77647:intron |
CGAACCAAAACTCGGAAATC+AGG | 0.376290 | 2.3:+29631471 | None:intergenic |
CAAATATAGGTGTTGTATAC+AGG | 0.377485 | 2.3:-29632213 | MS.gene77647:intron |
AGTATTCACATCTGAACTAA+TGG | 0.378490 | 2.3:+29624597 | None:intergenic |
CAAGGCAAAAGATAATTTAC+TGG | 0.396100 | 2.3:-29624799 | MS.gene77647:intron |
GCAGTATCACCGATTGTATA+AGG | 0.400018 | 2.3:-29631427 | MS.gene77647:intron |
GCTGAAATTGATGATTATTT+GGG | 0.402207 | 2.3:-29628170 | MS.gene77647:intron |
GCTTACATATTGCCTCGATT+CGG | 0.407866 | 2.3:-29622858 | MS.gene77647:CDS |
TAAACAATTTAACAGATAAC+AGG | 0.415830 | 2.3:-29624730 | MS.gene77647:intron |
TTTGCTTTCGAAACCTCAAC+TGG | 0.417631 | 2.3:-29622763 | MS.gene77647:CDS |
TTGGCATTTCCCAGGTTTGA+GGG | 0.418418 | 2.3:-29629154 | MS.gene77647:intron |
TAATGGACCACAACTATATC+AGG | 0.419917 | 2.3:-29630185 | MS.gene77647:intron |
CTGAATCAATTGCTTTCTAT+GGG | 0.426601 | 2.3:-29626574 | MS.gene77647:CDS |
TTGCTGTAGGTGGATCCATC+AGG | 0.428961 | 2.3:-29630028 | MS.gene77647:intron |
GAGTGTCCCTGCTTGTTGCT+GGG | 0.436297 | 2.3:-29630216 | MS.gene77647:CDS |
CGGGCTGATAAAGATCTTAG+AGG | 0.437706 | 2.3:-29622892 | MS.gene77647:CDS |
TTGGTTCTTGCAGCTGCAAA+TGG | 0.438100 | 2.3:-29632728 | MS.gene77647:intron |
GGAGTTCAAGAATACCTCAT+TGG | 0.440355 | 2.3:+29622704 | None:intergenic |
GCTTCATCAACCAATATAGA+TGG | 0.444983 | 2.3:+29632677 | None:intergenic |
CAGTTATTAACACCAAATAT+AGG | 0.451124 | 2.3:-29632226 | MS.gene77647:CDS |
ACAATTACTTTATCCAACTT+GGG | 0.452027 | 2.3:-29624473 | MS.gene77647:CDS |
ATGGCTGGTCTATGGAGAAC+TGG | 0.454629 | 2.3:-29624670 | MS.gene77647:CDS |
TCCAGATTTCTCGAAGAAAT+CGG | 0.459412 | 2.3:+29626167 | None:intergenic |
CCTACCTCAAAAGCCATACA+TGG | 0.460007 | 2.3:-29624515 | MS.gene77647:CDS |
TCTTGGAAAGCTTCTGCTAT+GGG | 0.460139 | 2.3:-29629995 | MS.gene77647:CDS |
AAATCCATCAGCAGAAAATC+CGG | 0.462938 | 2.3:-29624547 | MS.gene77647:CDS |
ACAAGTTGAGTGACAGGGAT+TGG | 0.466755 | 2.3:+29630963 | None:intergenic |
GTTGCTCCCATGTATTTCTC+GGG | 0.470101 | 2.3:-29626092 | MS.gene77647:CDS |
TCATATACTATGTTAAAGGC+AGG | 0.471376 | 2.3:-29624636 | MS.gene77647:CDS |
TTGTTTATTACTATCTGATG+TGG | 0.479466 | 2.3:+29624435 | None:intergenic |
TTCTTGGAAAGCTTCTGCTA+TGG | 0.480341 | 2.3:-29629996 | MS.gene77647:CDS |
GAACATGCTTTAACTGCTGT+TGG | 0.482096 | 2.3:-29634156 | MS.gene77647:CDS |
TGGCTGTTCATTGTTTGAAT+CGG | 0.483100 | 2.3:+29622268 | None:intergenic |
TGGTCTAGTGTTCTCTCTCT+GGG | 0.488358 | 2.3:-29622816 | MS.gene77647:CDS |
TAAAGAGGATTCACGTCTAG+TGG | 0.489949 | 2.3:+29622229 | None:intergenic |
TCCCTCACAAGTTGAGTGAC+AGG | 0.493790 | 2.3:+29630957 | None:intergenic |
TACGAAAAGATTGCAGCAGC+GGG | 0.497494 | 2.3:-29622365 | MS.gene77647:CDS |
AGAGTACCCAAAACCATGTA+TGG | 0.498923 | 2.3:+29624502 | None:intergenic |
CATATTGCCTCGATTCGGGT+TGG | 0.499636 | 2.3:-29622853 | MS.gene77647:CDS |
TCTATCGTGGAAGTTGCATA+AGG | 0.502103 | 2.3:+29622310 | None:intergenic |
TCATCTGAGTTTGACAAGAA+AGG | 0.504088 | 2.3:+29622948 | None:intergenic |
GTTGGCATTTCCCAGGTTTG+AGG | 0.504319 | 2.3:-29629155 | MS.gene77647:intron |
CTAAGACATTTCTTGAGAAG+AGG | 0.508140 | 2.3:-29629955 | MS.gene77647:intron |
AGACTTGTCATTGACAATCA+AGG | 0.514662 | 2.3:-29624817 | MS.gene77647:CDS |
GTCCCCATTATGGACTTGTA+CGG | 0.514802 | 2.3:-29626610 | MS.gene77647:CDS |
TGTTTATTACTATCTGATGT+GGG | 0.518456 | 2.3:+29624436 | None:intergenic |
GGTTGGATTCAACACATGAA+TGG | 0.519369 | 2.3:-29622836 | MS.gene77647:CDS |
ATGGGAGCAACAACAGCAGC+TGG | 0.520456 | 2.3:+29626104 | None:intergenic |
TCTCTCTCTGATTCTTTGGA+AGG | 0.525209 | 2.3:-29624971 | MS.gene77647:CDS |
CATCAAACCCAGCAACAAGC+AGG | 0.525359 | 2.3:+29630209 | None:intergenic |
GGTTCTGGACAAACTTCTCT+CGG | 0.526164 | 2.3:-29634135 | MS.gene77647:CDS |
GGCATAACATACATTAGTGT+TGG | 0.526211 | 2.3:-29622344 | MS.gene77647:CDS |
CAAACTTCTCTCGGTATCAA+AGG | 0.527227 | 2.3:-29634126 | MS.gene77647:intron |
TATGGTGTACCTTATACAAT+CGG | 0.527859 | 2.3:+29631418 | None:intergenic |
TCCCCATTATGGACTTGTAC+GGG | 0.528372 | 2.3:-29626609 | MS.gene77647:CDS |
CCCTGTCACTCAACTTGTGA+GGG | 0.529229 | 2.3:-29630958 | MS.gene77647:CDS |
AAATAATCATCAATTTCAGC+TGG | 0.537679 | 2.3:+29628173 | None:intergenic |
ATTGGCTTCATCAAGTGCGC+TGG | 0.539039 | 2.3:+29622722 | None:intergenic |
TGCAGGAATTTACTCAGTCT+GGG | 0.542143 | 2.3:-29630920 | MS.gene77647:intron |
ATAACAGGACCAAGTGGAAG+TGG | 0.548195 | 2.3:-29624715 | MS.gene77647:CDS |
TCTTTATTAGGAGTTATGGC+TGG | 0.548856 | 2.3:-29624685 | MS.gene77647:CDS |
AATCGGTTGTAGATGTGCGT+AGG | 0.560596 | 2.3:+29622285 | None:intergenic |
AAGCTTACCAGAAGGACTAA+AGG | 0.561625 | 2.3:+29634188 | None:intergenic |
GCCATATTGACACTGAAGGA+AGG | 0.565690 | 2.3:-29629696 | MS.gene77647:CDS |
CAATTACTTTATCCAACTTG+GGG | 0.565844 | 2.3:-29624472 | MS.gene77647:CDS |
ACAAGCAGGGACACTCCAAA+TGG | 0.570540 | 2.3:+29630223 | None:intergenic |
AATGACATAGCGGTAACCAT+TGG | 0.575192 | 2.3:+29626136 | None:intergenic |
GAATCAATTGCTTTCTATGG+GGG | 0.581535 | 2.3:-29626572 | MS.gene77647:CDS |
ACTACATCATCACCCCAAGT+TGG | 0.582232 | 2.3:+29624460 | None:intergenic |
CCCTCACAAGTTGAGTGACA+GGG | 0.583404 | 2.3:+29630958 | None:intergenic |
GGAAGTTGCTGCTGTCATGC+AGG | 0.583748 | 2.3:-29630937 | MS.gene77647:CDS |
AATCTGGAGTTCTTCACCAA+TGG | 0.584185 | 2.3:-29626152 | MS.gene77647:CDS |
CGCACTTGATGAAGCCAATG+AGG | 0.586668 | 2.3:-29622718 | MS.gene77647:intron |
AAAGAGGATTCACGTCTAGT+GGG | 0.593410 | 2.3:+29622230 | None:intergenic |
TGCCATACCTGATATAGTTG+TGG | 0.596286 | 2.3:+29630178 | None:intergenic |
ATCAAACCCAGCAACAAGCA+GGG | 0.606489 | 2.3:+29630210 | None:intergenic |
TCCCTGTCACTCAACTTGTG+AGG | 0.608754 | 2.3:-29630959 | MS.gene77647:CDS |
CATATACTATGTTAAAGGCA+GGG | 0.608955 | 2.3:-29624635 | MS.gene77647:CDS |
CCATATTGACACTGAAGGAA+GGG | 0.609464 | 2.3:-29629695 | MS.gene77647:intron |
CACAGCCATATTGACACTGA+AGG | 0.611228 | 2.3:-29629700 | MS.gene77647:CDS |
GTACGAAAAGATTGCAGCAG+CGG | 0.617171 | 2.3:-29622366 | MS.gene77647:CDS |
TCATCCAATAGAGCCAGTTG+AGG | 0.619103 | 2.3:+29622750 | None:intergenic |
ATCTGAACAAGCTTACCAGA+AGG | 0.620962 | 2.3:+29634180 | None:intergenic |
AGATGGCAGTTTCTTCTCTG+TGG | 0.628548 | 2.3:+29632694 | None:intergenic |
TGGTCTATGGAGAACTGGAA+CGG | 0.647067 | 2.3:-29624665 | MS.gene77647:CDS |
GTAATAAGCGTAGAATCACT+TGG | 0.648926 | 2.3:+29624840 | None:intergenic |
CATACATTAGTGTTGGCCAT+CGG | 0.648954 | 2.3:-29622337 | MS.gene77647:CDS |
TGAATCAATTGCTTTCTATG+GGG | 0.651189 | 2.3:-29626573 | MS.gene77647:CDS |
GTTGAATCCAACCCGAATCG+AGG | 0.659210 | 2.3:+29622846 | None:intergenic |
TAACAGATAACAGGACCAAG+TGG | 0.669592 | 2.3:-29624721 | MS.gene77647:intron |
TCAGTGTCAATATGGCTGTG+TGG | 0.671904 | 2.3:+29629703 | None:intergenic |
AGTTGCATAAGGTTGACCGA+TGG | 0.689538 | 2.3:+29622321 | None:intergenic |
GAGGCAATATGTAAGCAAGA+CGG | 0.697858 | 2.3:+29622865 | None:intergenic |
ACCCGTACAAGTCCATAATG+GGG | 0.707220 | 2.3:+29626608 | None:intergenic |
ATGTGCGTAGGATTCTATCG+TGG | 0.715688 | 2.3:+29622297 | None:intergenic |
GAAGAACTTGAATGACATAG+CGG | 0.744194 | 2.3:+29626126 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.3 | gene | 29622220 | 29634244 | 29622220 | ID=MS.gene77647 |
chr2.3 | mRNA | 29622220 | 29634244 | 29622220 | ID=MS.gene77647.t1;Parent=MS.gene77647 |
chr2.3 | exon | 29634127 | 29634244 | 29634127 | ID=MS.gene77647.t1.exon1;Parent=MS.gene77647.t1 |
chr2.3 | CDS | 29634127 | 29634244 | 29634127 | ID=cds.MS.gene77647.t1;Parent=MS.gene77647.t1 |
chr2.3 | exon | 29632673 | 29632737 | 29632673 | ID=MS.gene77647.t1.exon2;Parent=MS.gene77647.t1 |
chr2.3 | CDS | 29632673 | 29632737 | 29632673 | ID=cds.MS.gene77647.t1;Parent=MS.gene77647.t1 |
chr2.3 | exon | 29632214 | 29632260 | 29632214 | ID=MS.gene77647.t1.exon3;Parent=MS.gene77647.t1 |
chr2.3 | CDS | 29632214 | 29632260 | 29632214 | ID=cds.MS.gene77647.t1;Parent=MS.gene77647.t1 |
chr2.3 | exon | 29631428 | 29631503 | 29631428 | ID=MS.gene77647.t1.exon4;Parent=MS.gene77647.t1 |
chr2.3 | CDS | 29631428 | 29631503 | 29631428 | ID=cds.MS.gene77647.t1;Parent=MS.gene77647.t1 |
chr2.3 | exon | 29630921 | 29630988 | 29630921 | ID=MS.gene77647.t1.exon5;Parent=MS.gene77647.t1 |
chr2.3 | CDS | 29630921 | 29630988 | 29630921 | ID=cds.MS.gene77647.t1;Parent=MS.gene77647.t1 |
chr2.3 | exon | 29630186 | 29630255 | 29630186 | ID=MS.gene77647.t1.exon6;Parent=MS.gene77647.t1 |
chr2.3 | CDS | 29630186 | 29630255 | 29630186 | ID=cds.MS.gene77647.t1;Parent=MS.gene77647.t1 |
chr2.3 | exon | 29629956 | 29630041 | 29629956 | ID=MS.gene77647.t1.exon7;Parent=MS.gene77647.t1 |
chr2.3 | CDS | 29629956 | 29630041 | 29629956 | ID=cds.MS.gene77647.t1;Parent=MS.gene77647.t1 |
chr2.3 | exon | 29629696 | 29629758 | 29629696 | ID=MS.gene77647.t1.exon8;Parent=MS.gene77647.t1 |
chr2.3 | CDS | 29629696 | 29629758 | 29629696 | ID=cds.MS.gene77647.t1;Parent=MS.gene77647.t1 |
chr2.3 | exon | 29629097 | 29629162 | 29629097 | ID=MS.gene77647.t1.exon9;Parent=MS.gene77647.t1 |
chr2.3 | CDS | 29629097 | 29629162 | 29629097 | ID=cds.MS.gene77647.t1;Parent=MS.gene77647.t1 |
chr2.3 | exon | 29628171 | 29628205 | 29628171 | ID=MS.gene77647.t1.exon10;Parent=MS.gene77647.t1 |
chr2.3 | CDS | 29628171 | 29628205 | 29628171 | ID=cds.MS.gene77647.t1;Parent=MS.gene77647.t1 |
chr2.3 | exon | 29626511 | 29626662 | 29626511 | ID=MS.gene77647.t1.exon11;Parent=MS.gene77647.t1 |
chr2.3 | CDS | 29626511 | 29626662 | 29626511 | ID=cds.MS.gene77647.t1;Parent=MS.gene77647.t1 |
chr2.3 | exon | 29626078 | 29626195 | 29626078 | ID=MS.gene77647.t1.exon12;Parent=MS.gene77647.t1 |
chr2.3 | CDS | 29626078 | 29626195 | 29626078 | ID=cds.MS.gene77647.t1;Parent=MS.gene77647.t1 |
chr2.3 | exon | 29624934 | 29625031 | 29624934 | ID=MS.gene77647.t1.exon13;Parent=MS.gene77647.t1 |
chr2.3 | CDS | 29624934 | 29625031 | 29624934 | ID=cds.MS.gene77647.t1;Parent=MS.gene77647.t1 |
chr2.3 | exon | 29624800 | 29624886 | 29624800 | ID=MS.gene77647.t1.exon14;Parent=MS.gene77647.t1 |
chr2.3 | CDS | 29624800 | 29624886 | 29624800 | ID=cds.MS.gene77647.t1;Parent=MS.gene77647.t1 |
chr2.3 | exon | 29624446 | 29624737 | 29624446 | ID=MS.gene77647.t1.exon15;Parent=MS.gene77647.t1 |
chr2.3 | CDS | 29624446 | 29624737 | 29624446 | ID=cds.MS.gene77647.t1;Parent=MS.gene77647.t1 |
chr2.3 | exon | 29622719 | 29622978 | 29622719 | ID=MS.gene77647.t1.exon16;Parent=MS.gene77647.t1 |
chr2.3 | CDS | 29622719 | 29622978 | 29622719 | ID=cds.MS.gene77647.t1;Parent=MS.gene77647.t1 |
chr2.3 | exon | 29622220 | 29622396 | 29622220 | ID=MS.gene77647.t1.exon17;Parent=MS.gene77647.t1 |
chr2.3 | CDS | 29622220 | 29622396 | 29622220 | ID=cds.MS.gene77647.t1;Parent=MS.gene77647.t1 |
Gene Sequence |
Protein sequence |