Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78657.t1 | KEH41598.1 | 93.8 | 292 | 18 | 0 | 1 | 292 | 43 | 334 | 1.30E-166 | 595.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78657.t1 | A0A072VU01 | 93.8 | 292 | 18 | 0 | 1 | 292 | 43 | 334 | 9.6e-167 | 595.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04932 | MS.gene78657 | 0.839797 | 1.28E-57 | -1.69E-46 |
| MS.gene049549 | MS.gene78657 | 0.833862 | 4.18E-56 | -1.69E-46 |
| MS.gene050772 | MS.gene78657 | -0.80059 | 1.34E-48 | -1.69E-46 |
| MS.gene05104 | MS.gene78657 | 0.805507 | 1.29E-49 | -1.69E-46 |
| MS.gene051131 | MS.gene78657 | 0.814471 | 1.52E-51 | -1.69E-46 |
| MS.gene051138 | MS.gene78657 | 0.817899 | 2.60E-52 | -1.69E-46 |
| MS.gene052211 | MS.gene78657 | 0.836124 | 1.12E-56 | -1.69E-46 |
| MS.gene05240 | MS.gene78657 | 0.849432 | 3.25E-60 | -1.69E-46 |
| MS.gene05244 | MS.gene78657 | 0.825959 | 3.53E-54 | -1.69E-46 |
| MS.gene052606 | MS.gene78657 | 0.813014 | 3.17E-51 | -1.69E-46 |
| MS.gene052702 | MS.gene78657 | 0.820189 | 7.82E-53 | -1.69E-46 |
| MS.gene053031 | MS.gene78657 | 0.823945 | 1.05E-53 | -1.69E-46 |
| MS.gene053033 | MS.gene78657 | 0.827866 | 1.23E-54 | -1.69E-46 |
| MS.gene053406 | MS.gene78657 | 0.809083 | 2.25E-50 | -1.69E-46 |
| MS.gene053420 | MS.gene78657 | 0.8138 | 2.13E-51 | -1.69E-46 |
| MS.gene053574 | MS.gene78657 | -0.803462 | 3.45E-49 | -1.69E-46 |
| MS.gene053887 | MS.gene78657 | 0.807474 | 4.97E-50 | -1.69E-46 |
| MS.gene054146 | MS.gene78657 | 0.807688 | 4.47E-50 | -1.69E-46 |
| MS.gene054181 | MS.gene78657 | 0.831722 | 1.42E-55 | -1.69E-46 |
| MS.gene054742 | MS.gene78657 | 0.827155 | 1.83E-54 | -1.69E-46 |
| MS.gene05483 | MS.gene78657 | 0.824955 | 6.10E-54 | -1.69E-46 |
| MS.gene054884 | MS.gene78657 | 0.813287 | 2.76E-51 | -1.69E-46 |
| MS.gene055959 | MS.gene78657 | 0.805444 | 1.33E-49 | -1.69E-46 |
| MS.gene056590 | MS.gene78657 | 0.842314 | 2.79E-58 | -1.69E-46 |
| MS.gene056591 | MS.gene78657 | 0.842697 | 2.21E-58 | -1.69E-46 |
| MS.gene056697 | MS.gene78657 | 0.806416 | 8.32E-50 | -1.69E-46 |
| MS.gene056748 | MS.gene78657 | 0.802607 | 5.18E-49 | -1.69E-46 |
| MS.gene056856 | MS.gene78657 | 0.83371 | 4.56E-56 | -1.69E-46 |
| MS.gene056920 | MS.gene78657 | 0.824116 | 9.61E-54 | -1.69E-46 |
| MS.gene057261 | MS.gene78657 | 0.840611 | 7.84E-58 | -1.69E-46 |
| MS.gene057544 | MS.gene78657 | 0.806769 | 7.00E-50 | -1.69E-46 |
| MS.gene057547 | MS.gene78657 | 0.816531 | 5.27E-52 | -1.69E-46 |
| MS.gene057768 | MS.gene78657 | 0.802606 | 5.18E-49 | -1.69E-46 |
| MS.gene058099 | MS.gene78657 | 0.822842 | 1.91E-53 | -1.69E-46 |
| MS.gene058334 | MS.gene78657 | 0.807325 | 5.34E-50 | -1.69E-46 |
| MS.gene058450 | MS.gene78657 | 0.800786 | 1.22E-48 | -1.69E-46 |
| MS.gene058603 | MS.gene78657 | 0.812466 | 4.18E-51 | -1.69E-46 |
| MS.gene059402 | MS.gene78657 | 0.823647 | 1.24E-53 | -1.69E-46 |
| MS.gene059953 | MS.gene78657 | 0.841929 | 3.53E-58 | -1.69E-46 |
| MS.gene059955 | MS.gene78657 | 0.844647 | 6.64E-59 | -1.69E-46 |
| MS.gene060087 | MS.gene78657 | 0.806954 | 6.40E-50 | -1.69E-46 |
| MS.gene060405 | MS.gene78657 | 0.813602 | 2.36E-51 | -1.69E-46 |
| MS.gene060593 | MS.gene78657 | 0.825547 | 4.42E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78657.t1 | MTR_1g052640 | 93.836 | 292 | 18 | 0 | 1 | 292 | 43 | 334 | 0.0 | 579 |
| MS.gene78657.t1 | MTR_1g052640 | 93.836 | 292 | 18 | 0 | 1 | 292 | 43 | 334 | 0.0 | 578 |
| MS.gene78657.t1 | MTR_0083s0100 | 87.329 | 292 | 37 | 0 | 1 | 292 | 43 | 334 | 0.0 | 552 |
| MS.gene78657.t1 | MTR_1g052640 | 95.021 | 241 | 12 | 0 | 1 | 241 | 43 | 283 | 1.40e-175 | 486 |
| MS.gene78657.t1 | MTR_2g030470 | 79.452 | 292 | 59 | 1 | 1 | 292 | 458 | 748 | 2.51e-173 | 500 |
| MS.gene78657.t1 | MTR_2g030470 | 76.027 | 292 | 69 | 1 | 1 | 292 | 46 | 336 | 5.10e-164 | 476 |
| MS.gene78657.t1 | MTR_2g030480 | 73.288 | 292 | 57 | 2 | 1 | 292 | 43 | 313 | 1.60e-160 | 452 |
| MS.gene78657.t1 | MTR_2g030460 | 69.283 | 293 | 88 | 2 | 1 | 292 | 43 | 334 | 2.56e-159 | 447 |
| MS.gene78657.t1 | MTR_2g030460 | 69.283 | 293 | 88 | 2 | 1 | 292 | 43 | 334 | 2.72e-158 | 447 |
| MS.gene78657.t1 | MTR_4g094555 | 61.667 | 300 | 106 | 2 | 1 | 292 | 40 | 338 | 6.91e-141 | 404 |
| MS.gene78657.t1 | MTR_4g094560 | 61.986 | 292 | 108 | 2 | 1 | 292 | 40 | 328 | 1.15e-140 | 403 |
| MS.gene78657.t1 | MTR_6g048310 | 60.333 | 300 | 109 | 3 | 1 | 292 | 39 | 336 | 1.17e-137 | 395 |
| MS.gene78657.t1 | MTR_4g094550 | 60.667 | 300 | 109 | 2 | 1 | 292 | 41 | 339 | 1.82e-137 | 395 |
| MS.gene78657.t1 | MTR_4g094570 | 60.000 | 300 | 111 | 2 | 1 | 292 | 40 | 338 | 8.04e-137 | 394 |
| MS.gene78657.t1 | MTR_4g094562 | 59.333 | 300 | 113 | 2 | 1 | 292 | 40 | 338 | 3.23e-136 | 392 |
| MS.gene78657.t1 | MTR_4g094548 | 58.472 | 301 | 115 | 2 | 1 | 292 | 41 | 340 | 1.61e-134 | 388 |
| MS.gene78657.t1 | MTR_6g048350 | 59.000 | 300 | 114 | 2 | 1 | 292 | 40 | 338 | 2.72e-134 | 387 |
| MS.gene78657.t1 | MTR_4g094562 | 59.274 | 248 | 92 | 2 | 1 | 240 | 40 | 286 | 5.32e-111 | 324 |
| MS.gene78657.t1 | MTR_4g094565 | 54.772 | 241 | 86 | 3 | 1 | 240 | 40 | 258 | 2.00e-91 | 274 |
| MS.gene78657.t1 | MTR_4g094565 | 54.583 | 240 | 86 | 3 | 1 | 239 | 40 | 257 | 1.04e-90 | 273 |
| MS.gene78657.t1 | MTR_8g039300 | 40.717 | 307 | 156 | 7 | 1 | 292 | 38 | 333 | 1.28e-85 | 262 |
| MS.gene78657.t1 | MTR_6g089930 | 39.739 | 307 | 159 | 7 | 1 | 292 | 38 | 333 | 2.43e-84 | 259 |
| MS.gene78657.t1 | MTR_6g090090 | 42.020 | 307 | 142 | 8 | 1 | 292 | 64 | 349 | 7.17e-84 | 258 |
| MS.gene78657.t1 | MTR_3g035040 | 39.414 | 307 | 160 | 7 | 1 | 292 | 38 | 333 | 5.70e-80 | 248 |
| MS.gene78657.t1 | MTR_1g035220 | 39.088 | 307 | 140 | 8 | 1 | 292 | 38 | 312 | 7.06e-71 | 223 |
| MS.gene78657.t1 | MTR_1g062750 | 43.277 | 238 | 115 | 6 | 19 | 241 | 2 | 234 | 3.17e-64 | 202 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78657.t1 | AT5G61820 | 52.077 | 313 | 121 | 6 | 2 | 292 | 41 | 346 | 1.63e-110 | 328 |
| MS.gene78657.t1 | AT5G61820 | 52.077 | 313 | 121 | 6 | 2 | 292 | 41 | 346 | 1.63e-110 | 328 |
Find 64 sgRNAs with CRISPR-Local
Find 81 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAATACCTGATTGGCTATT+TGG | 0.105184 | 1.4:-42761456 | None:intergenic |
| CAATTGGGATGTTAACTTTA+TGG | 0.150822 | 1.4:+42761863 | MS.gene78657:CDS |
| CATTTCTCCACATACCCTTT+TGG | 0.274775 | 1.4:-42761612 | None:intergenic |
| GCAATTGGATCAACTCTATA+TGG | 0.301761 | 1.4:+42762317 | MS.gene78657:CDS |
| ATCTTGCACTTGCTATTATC+AGG | 0.317724 | 1.4:-42761780 | None:intergenic |
| AACAGTGTATTTCAAATAGA+TGG | 0.319094 | 1.4:-42761832 | None:intergenic |
| TCCTGGATTTAGTTCAATCT+TGG | 0.319107 | 1.4:-42761265 | None:intergenic |
| ACACTGTTACGTGGATCAAT+TGG | 0.329353 | 1.4:+42761847 | MS.gene78657:CDS |
| ACATATATTCCAGACCCTTA+TGG | 0.334506 | 1.4:+42761561 | MS.gene78657:CDS |
| GCTTTGAGTCCAAATTATAA+AGG | 0.356541 | 1.4:+42761741 | MS.gene78657:CDS |
| TTAGGACAATACTATGGTCT+TGG | 0.372734 | 1.4:+42761516 | MS.gene78657:CDS |
| TTAAGAAAATAATACCTGAT+TGG | 0.381244 | 1.4:-42761464 | None:intergenic |
| GCGAGCTTCCCAATGCAAAA+TGG | 0.381323 | 1.4:+42762254 | MS.gene78657:CDS |
| AATGGAGGTTATGTCATCTA+TGG | 0.382620 | 1.4:+42762272 | MS.gene78657:CDS |
| CTTTGAGTCCAAATTATAAA+GGG | 0.386608 | 1.4:+42761742 | MS.gene78657:CDS |
| AATGTAACAAAAGATGAAAA+TGG | 0.403395 | 1.4:+42761714 | MS.gene78657:CDS |
| ACTTTATTTGAAACAAATCC+TGG | 0.406209 | 1.4:-42761282 | None:intergenic |
| CCTGGATTTAGTTCAATCTT+GGG | 0.408000 | 1.4:-42761264 | None:intergenic |
| CATCTACATACAGGTGCAAT+TGG | 0.410018 | 1.4:+42762302 | MS.gene78657:CDS |
| CAAAAGGGTATGTGGAGAAA+TGG | 0.410394 | 1.4:+42761613 | MS.gene78657:CDS |
| GTGACACCAAATAGCCAATC+AGG | 0.433825 | 1.4:+42761450 | MS.gene78657:CDS |
| TTACCAACTTCAATTCCATA+AGG | 0.443110 | 1.4:-42761576 | None:intergenic |
| ATCAAACTTATCTACACCAT+TGG | 0.445662 | 1.4:+42761397 | MS.gene78657:CDS |
| TTGAGTGAAATATGACCTCT+TGG | 0.446302 | 1.4:-42761324 | None:intergenic |
| AATGGTGTAGATAAGTTTGA+TGG | 0.446934 | 1.4:-42761395 | None:intergenic |
| TACGAGGGGTGTGGATGATC+GGG | 0.452472 | 1.4:+42761659 | MS.gene78657:CDS |
| CACTGTTACGTGGATCAATT+GGG | 0.464348 | 1.4:+42761848 | MS.gene78657:CDS |
| CCCAAGATTGAACTAAATCC+AGG | 0.471202 | 1.4:+42761264 | MS.gene78657:CDS |
| AATCCTGCTGAAATTCCAAA+AGG | 0.472130 | 1.4:+42761597 | MS.gene78657:CDS |
| GACCCTTATGGAATTGAAGT+TGG | 0.478316 | 1.4:+42761573 | MS.gene78657:CDS |
| ACTTCAATTCCATAAGGGTC+TGG | 0.479587 | 1.4:-42761570 | None:intergenic |
| ATACGAGGGGTGTGGATGAT+CGG | 0.480331 | 1.4:+42761658 | MS.gene78657:CDS |
| TACCAACTTCAATTCCATAA+GGG | 0.483211 | 1.4:-42761575 | None:intergenic |
| TCAAACTTATCTACACCATT+GGG | 0.498383 | 1.4:+42761398 | MS.gene78657:CDS |
| TCAAATATATAAACGTTGAC+CGG | 0.504839 | 1.4:-42761888 | None:intergenic |
| GGATGTTAACTTTATGGTGC+CGG | 0.509600 | 1.4:+42761869 | MS.gene78657:CDS |
| AAGCTATCGGATAAGTCTAA+AGG | 0.510457 | 1.4:+42761927 | MS.gene78657:CDS |
| GGAGTTGGTCATCTACATAC+AGG | 0.539806 | 1.4:+42762293 | MS.gene78657:CDS |
| TGGATCAACTCTATATGGAC+AGG | 0.540193 | 1.4:+42762322 | MS.gene78657:CDS |
| ATTGTCCTAAAACATCCTCT+TGG | 0.543744 | 1.4:-42761503 | None:intergenic |
| GCTGAGCTAGTTGATGATGC+AGG | 0.547375 | 1.4:+42761357 | MS.gene78657:CDS |
| GGTTATGTCATCTATGGAGT+TGG | 0.568181 | 1.4:+42762278 | MS.gene78657:CDS |
| GACTGATACTTTGAAGCTAT+CGG | 0.573866 | 1.4:+42761914 | MS.gene78657:CDS |
| AGCAAGTGCAAGATGAGGAA+AGG | 0.579934 | 1.4:+42761789 | MS.gene78657:CDS |
| ATCCTGCTGAAATTCCAAAA+GGG | 0.582436 | 1.4:+42761598 | MS.gene78657:CDS |
| GAGGGGTGTGGATGATCGGG+TGG | 0.585742 | 1.4:+42761662 | MS.gene78657:CDS |
| TGTAGATAAGTTTGATGGAG+AGG | 0.591197 | 1.4:-42761390 | None:intergenic |
| GAGTATCAAGCATGATTGCA+AGG | 0.597085 | 1.4:+42761953 | MS.gene78657:CDS |
| TGCAATTGATACGAGGGGTG+TGG | 0.598035 | 1.4:+42761650 | MS.gene78657:CDS |
| TGAAATTCCAAAAGGGTATG+TGG | 0.598204 | 1.4:+42761605 | MS.gene78657:CDS |
| TTGAGTCCAAATTATAAAGG+GGG | 0.598573 | 1.4:+42761744 | MS.gene78657:CDS |
| AAAAGTAATGTGAGTGATAG+CGG | 0.599635 | 1.4:+42762212 | MS.gene78657:CDS |
| AGGGGTGTGGATGATCGGGT+GGG | 0.600563 | 1.4:+42761663 | MS.gene78657:CDS |
| TTTGAGTCCAAATTATAAAG+GGG | 0.613614 | 1.4:+42761743 | MS.gene78657:CDS |
| ACAATACTATGGTCTTGGAT+CGG | 0.617680 | 1.4:+42761521 | MS.gene78657:CDS |
| TGTTCATGCAATTGATACGA+GGG | 0.617695 | 1.4:+42761644 | MS.gene78657:CDS |
| CTGAGCTAGTTGATGATGCA+GGG | 0.637972 | 1.4:+42761358 | MS.gene78657:CDS |
| TATGATGTTGAGTTTCCAAG+AGG | 0.638000 | 1.4:+42761309 | MS.gene78657:CDS |
| ATAATAGCAAGTGCAAGATG+AGG | 0.647427 | 1.4:+42761784 | MS.gene78657:CDS |
| AGCTTCCCAATGCAAAATGG+AGG | 0.656715 | 1.4:+42762257 | MS.gene78657:CDS |
| AGTATCTTATAACAACCCAA+TGG | 0.662577 | 1.4:-42761413 | None:intergenic |
| ATTTGAAATACACTGTTACG+TGG | 0.664226 | 1.4:+42761838 | MS.gene78657:CDS |
| ATGTTCATGCAATTGATACG+AGG | 0.665580 | 1.4:+42761643 | MS.gene78657:CDS |
| GTTCATGCAATTGATACGAG+GGG | 0.696381 | 1.4:+42761645 | MS.gene78657:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTATTTTCTTAAGAAATAA+TGG | + | chr1.4:42761474-42761493 | MS.gene78657:CDS | 10.0% |
| !! | AATGTAACAAAAGATGAAAA+TGG | + | chr1.4:42761714-42761733 | MS.gene78657:CDS | 20.0% |
| !! | AGAGATTATTCTTTAAATAC+AGG | + | chr1.4:42762163-42762182 | MS.gene78657:intron | 20.0% |
| !! | TTAAGAAAATAATACCTGAT+TGG | - | chr1.4:42761467-42761486 | None:intergenic | 20.0% |
| !!! | TAAATTTGAGATCATTAAGT+AGG | - | chr1.4:42762058-42762077 | None:intergenic | 20.0% |
| !!! | TCAAATAGATGGTTTTTTTT+GGG | - | chr1.4:42761824-42761843 | None:intergenic | 20.0% |
| !!! | TTATTGTTTTACATAGTCTA+TGG | + | chr1.4:42762018-42762037 | MS.gene78657:intron | 20.0% |
| !!! | TTCAAATAGATGGTTTTTTT+TGG | - | chr1.4:42761825-42761844 | None:intergenic | 20.0% |
| ! | AACAGTGTATTTCAAATAGA+TGG | - | chr1.4:42761835-42761854 | None:intergenic | 25.0% |
| ! | CTTTGAGTCCAAATTATAAA+GGG | + | chr1.4:42761742-42761761 | MS.gene78657:CDS | 25.0% |
| ! | TCAAATATATAAACGTTGAC+CGG | - | chr1.4:42761891-42761910 | None:intergenic | 25.0% |
| ! | TTTGAGTCCAAATTATAAAG+GGG | + | chr1.4:42761743-42761762 | MS.gene78657:CDS | 25.0% |
| !! | ACTTTATTTGAAACAAATCC+TGG | - | chr1.4:42761285-42761304 | None:intergenic | 25.0% |
| !! | CATCTTTTGTTACATTGTAT+AGG | - | chr1.4:42761710-42761729 | None:intergenic | 25.0% |
| AAAAGTAATGTGAGTGATAG+CGG | + | chr1.4:42762212-42762231 | MS.gene78657:CDS | 30.0% | |
| AATGGTGTAGATAAGTTTGA+TGG | - | chr1.4:42761398-42761417 | None:intergenic | 30.0% | |
| AGTATCTTATAACAACCCAA+TGG | - | chr1.4:42761416-42761435 | None:intergenic | 30.0% | |
| ATCAAACTTATCTACACCAT+TGG | + | chr1.4:42761397-42761416 | MS.gene78657:CDS | 30.0% | |
| CAATTGGGATGTTAACTTTA+TGG | + | chr1.4:42761863-42761882 | MS.gene78657:CDS | 30.0% | |
| TACCAACTTCAATTCCATAA+GGG | - | chr1.4:42761578-42761597 | None:intergenic | 30.0% | |
| TCAAACTTATCTACACCATT+GGG | + | chr1.4:42761398-42761417 | MS.gene78657:CDS | 30.0% | |
| TTACCAACTTCAATTCCATA+AGG | - | chr1.4:42761579-42761598 | None:intergenic | 30.0% | |
| TTGAGTCCAAATTATAAAGG+GGG | + | chr1.4:42761744-42761763 | MS.gene78657:CDS | 30.0% | |
| ! | AAGATGAGGAAAGGATTTTT+AGG | + | chr1.4:42761798-42761817 | MS.gene78657:CDS | 30.0% |
| ! | ATAATACCTGATTGGCTATT+TGG | - | chr1.4:42761459-42761478 | None:intergenic | 30.0% |
| ! | ATTTGAAATACACTGTTACG+TGG | + | chr1.4:42761838-42761857 | MS.gene78657:CDS | 30.0% |
| ! | GCTTTGAGTCCAAATTATAA+AGG | + | chr1.4:42761741-42761760 | MS.gene78657:CDS | 30.0% |
| !!! | CTATTTGGTGTCACATTTTT+AGG | - | chr1.4:42761444-42761463 | None:intergenic | 30.0% |
| !!! | GATGTTTTAGGACAATACTA+TGG | + | chr1.4:42761510-42761529 | MS.gene78657:CDS | 30.0% |
| AAGCTATCGGATAAGTCTAA+AGG | + | chr1.4:42761927-42761946 | MS.gene78657:CDS | 35.0% | |
| AATCCTGCTGAAATTCCAAA+AGG | + | chr1.4:42761597-42761616 | MS.gene78657:CDS | 35.0% | |
| AATGGAGGTTATGTCATCTA+TGG | + | chr1.4:42762272-42762291 | MS.gene78657:CDS | 35.0% | |
| ACATATATTCCAGACCCTTA+TGG | + | chr1.4:42761561-42761580 | MS.gene78657:CDS | 35.0% | |
| ATAATAGCAAGTGCAAGATG+AGG | + | chr1.4:42761784-42761803 | MS.gene78657:CDS | 35.0% | |
| ATCCTGCTGAAATTCCAAAA+GGG | + | chr1.4:42761598-42761617 | MS.gene78657:CDS | 35.0% | |
| ATGTTCATGCAATTGATACG+AGG | + | chr1.4:42761643-42761662 | MS.gene78657:CDS | 35.0% | |
| ATTGTCCTAAAACATCCTCT+TGG | - | chr1.4:42761506-42761525 | None:intergenic | 35.0% | |
| GCAATTGGATCAACTCTATA+TGG | + | chr1.4:42762317-42762336 | MS.gene78657:CDS | 35.0% | |
| TATGATGTTGAGTTTCCAAG+AGG | + | chr1.4:42761309-42761328 | MS.gene78657:CDS | 35.0% | |
| TGCAAACCCCCTTTATAATT+TGG | - | chr1.4:42761753-42761772 | None:intergenic | 35.0% | |
| TGTAGATAAGTTTGATGGAG+AGG | - | chr1.4:42761393-42761412 | None:intergenic | 35.0% | |
| TGTTCATGCAATTGATACGA+GGG | + | chr1.4:42761644-42761663 | MS.gene78657:CDS | 35.0% | |
| TTAGGACAATACTATGGTCT+TGG | + | chr1.4:42761516-42761535 | MS.gene78657:CDS | 35.0% | |
| TTGAGTGAAATATGACCTCT+TGG | - | chr1.4:42761327-42761346 | None:intergenic | 35.0% | |
| ! | AAATAATGGCTTTTGCCAAG+AGG | + | chr1.4:42761488-42761507 | MS.gene78657:CDS | 35.0% |
| ! | ACAATACTATGGTCTTGGAT+CGG | + | chr1.4:42761521-42761540 | MS.gene78657:CDS | 35.0% |
| ! | ACATAACCTCCATTTTGCAT+TGG | - | chr1.4:42762266-42762285 | None:intergenic | 35.0% |
| ! | CATAACCTCCATTTTGCATT+GGG | - | chr1.4:42762265-42762284 | None:intergenic | 35.0% |
| ! | CCTGGATTTAGTTCAATCTT+GGG | - | chr1.4:42761267-42761286 | None:intergenic | 35.0% |
| ! | TCCTGGATTTAGTTCAATCT+TGG | - | chr1.4:42761268-42761287 | None:intergenic | 35.0% |
| ! | TGAAATTCCAAAAGGGTATG+TGG | + | chr1.4:42761605-42761624 | MS.gene78657:CDS | 35.0% |
| ! | TTTTGCCAAGAGGATGTTTT+AGG | + | chr1.4:42761498-42761517 | MS.gene78657:CDS | 35.0% |
| !! | ATCTTGCACTTGCTATTATC+AGG | - | chr1.4:42761783-42761802 | None:intergenic | 35.0% |
| !! | GACTGATACTTTGAAGCTAT+CGG | + | chr1.4:42761914-42761933 | MS.gene78657:CDS | 35.0% |
| !!! | TTGGTGTCACATTTTTAGGT+TGG | - | chr1.4:42761440-42761459 | None:intergenic | 35.0% |
| ACACTGTTACGTGGATCAAT+TGG | + | chr1.4:42761847-42761866 | MS.gene78657:CDS | 40.0% | |
| ACTTCAATTCCATAAGGGTC+TGG | - | chr1.4:42761573-42761592 | None:intergenic | 40.0% | |
| CACTGTTACGTGGATCAATT+GGG | + | chr1.4:42761848-42761867 | MS.gene78657:CDS | 40.0% | |
| CATCTACATACAGGTGCAAT+TGG | + | chr1.4:42762302-42762321 | MS.gene78657:CDS | 40.0% | |
| CCCAAGATTGAACTAAATCC+AGG | + | chr1.4:42761264-42761283 | MS.gene78657:CDS | 40.0% | |
| GACCCTTATGGAATTGAAGT+TGG | + | chr1.4:42761573-42761592 | MS.gene78657:CDS | 40.0% | |
| GAGTATCAAGCATGATTGCA+AGG | + | chr1.4:42761953-42761972 | MS.gene78657:CDS | 40.0% | |
| GGATGTTAACTTTATGGTGC+CGG | + | chr1.4:42761869-42761888 | MS.gene78657:CDS | 40.0% | |
| GGTTATGTCATCTATGGAGT+TGG | + | chr1.4:42762278-42762297 | MS.gene78657:CDS | 40.0% | |
| GTTCATGCAATTGATACGAG+GGG | + | chr1.4:42761645-42761664 | MS.gene78657:CDS | 40.0% | |
| ! | CAAAAGGGTATGTGGAGAAA+TGG | + | chr1.4:42761613-42761632 | MS.gene78657:CDS | 40.0% |
| ! | CATTTCTCCACATACCCTTT+TGG | - | chr1.4:42761615-42761634 | None:intergenic | 40.0% |
| !! | CTCACATTACTTTTGCTGCA+TGG | - | chr1.4:42762206-42762225 | None:intergenic | 40.0% |
| !!! | TACCCTTTTGGAATTTCAGC+AGG | - | chr1.4:42761603-42761622 | None:intergenic | 40.0% |
| AGCAAGTGCAAGATGAGGAA+AGG | + | chr1.4:42761789-42761808 | MS.gene78657:CDS | 45.0% | |
| AGCTTCCCAATGCAAAATGG+AGG | + | chr1.4:42762257-42762276 | MS.gene78657:CDS | 45.0% | |
| GTGACACCAAATAGCCAATC+AGG | + | chr1.4:42761450-42761469 | MS.gene78657:CDS | 45.0% | |
| ! | GGAGTTGGTCATCTACATAC+AGG | + | chr1.4:42762293-42762312 | MS.gene78657:CDS | 45.0% |
| !! | CTGAGCTAGTTGATGATGCA+GGG | + | chr1.4:42761358-42761377 | MS.gene78657:CDS | 45.0% |
| GCGAGCTTCCCAATGCAAAA+TGG | + | chr1.4:42762254-42762273 | MS.gene78657:CDS | 50.0% | |
| TGCAATTGATACGAGGGGTG+TGG | + | chr1.4:42761650-42761669 | MS.gene78657:CDS | 50.0% | |
| ! | ATACGAGGGGTGTGGATGAT+CGG | + | chr1.4:42761658-42761677 | MS.gene78657:CDS | 50.0% |
| !! | GCTGAGCTAGTTGATGATGC+AGG | + | chr1.4:42761357-42761376 | MS.gene78657:CDS | 50.0% |
| ! | TACGAGGGGTGTGGATGATC+GGG | + | chr1.4:42761659-42761678 | MS.gene78657:CDS | 55.0% |
| ! | AGGGGTGTGGATGATCGGGT+GGG | + | chr1.4:42761663-42761682 | MS.gene78657:CDS | 60.0% |
| ! | GAGGGGTGTGGATGATCGGG+TGG | + | chr1.4:42761662-42761681 | MS.gene78657:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 42761258 | 42762343 | 42761258 | ID=MS.gene78657 |
| chr1.4 | mRNA | 42761258 | 42762343 | 42761258 | ID=MS.gene78657.t1;Parent=MS.gene78657 |
| chr1.4 | exon | 42761258 | 42761974 | 42761258 | ID=MS.gene78657.t1.exon1;Parent=MS.gene78657.t1 |
| chr1.4 | CDS | 42761258 | 42761974 | 42761258 | ID=cds.MS.gene78657.t1;Parent=MS.gene78657.t1 |
| chr1.4 | exon | 42762185 | 42762343 | 42762185 | ID=MS.gene78657.t1.exon2;Parent=MS.gene78657.t1 |
| chr1.4 | CDS | 42762185 | 42762343 | 42762185 | ID=cds.MS.gene78657.t1;Parent=MS.gene78657.t1 |
| Gene Sequence |
| Protein sequence |
