Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79602.t1 | XP_003621186.2 | 97.5 | 238 | 6 | 0 | 30 | 267 | 88 | 325 | 8.80E-125 | 456.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79602.t1 | P81392 | 43.6 | 234 | 105 | 8 | 30 | 251 | 88 | 306 | 2.8e-34 | 147.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79602.t1 | Q2HVT2 | 97.5 | 238 | 6 | 0 | 30 | 267 | 88 | 325 | 6.3e-125 | 456.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene79602.t1 | TF | MYB-related |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049151 | MS.gene79602 | 0.805915 | 1.06E-49 | -1.69E-46 |
| MS.gene049297 | MS.gene79602 | 0.800998 | 1.11E-48 | -1.69E-46 |
| MS.gene049346 | MS.gene79602 | 0.830408 | 2.99E-55 | -1.69E-46 |
| MS.gene049378 | MS.gene79602 | 0.801602 | 8.33E-49 | -1.69E-46 |
| MS.gene049758 | MS.gene79602 | 0.83854 | 2.71E-57 | -1.69E-46 |
| MS.gene049915 | MS.gene79602 | 0.838777 | 2.35E-57 | -1.69E-46 |
| MS.gene050226 | MS.gene79602 | 0.813839 | 2.09E-51 | -1.69E-46 |
| MS.gene050227 | MS.gene79602 | 0.814689 | 1.36E-51 | -1.69E-46 |
| MS.gene050228 | MS.gene79602 | 0.809196 | 2.13E-50 | -1.69E-46 |
| MS.gene050301 | MS.gene79602 | 0.810394 | 1.18E-50 | -1.69E-46 |
| MS.gene050330 | MS.gene79602 | -0.809324 | 2.00E-50 | -1.69E-46 |
| MS.gene050623 | MS.gene79602 | -0.804199 | 2.42E-49 | -1.69E-46 |
| MS.gene050642 | MS.gene79602 | 0.822848 | 1.90E-53 | -1.69E-46 |
| MS.gene051983 | MS.gene79602 | 0.828349 | 9.45E-55 | -1.69E-46 |
| MS.gene052077 | MS.gene79602 | 0.815695 | 8.10E-52 | -1.69E-46 |
| MS.gene052176 | MS.gene79602 | 0.816564 | 5.18E-52 | -1.69E-46 |
| MS.gene052178 | MS.gene79602 | 0.809005 | 2.34E-50 | -1.69E-46 |
| MS.gene052302 | MS.gene79602 | 0.80332 | 3.69E-49 | -1.69E-46 |
| MS.gene052340 | MS.gene79602 | 0.809664 | 1.69E-50 | -1.69E-46 |
| MS.gene052376 | MS.gene79602 | 0.805677 | 1.19E-49 | -1.69E-46 |
| MS.gene052600 | MS.gene79602 | 0.813218 | 2.86E-51 | -1.69E-46 |
| MS.gene053557 | MS.gene79602 | 0.804985 | 1.66E-49 | -1.69E-46 |
| MS.gene053836 | MS.gene79602 | 0.829582 | 4.75E-55 | -1.69E-46 |
| MS.gene053928 | MS.gene79602 | 0.814631 | 1.40E-51 | -1.69E-46 |
| MS.gene054184 | MS.gene79602 | 0.809528 | 1.81E-50 | -1.69E-46 |
| MS.gene054185 | MS.gene79602 | 0.809327 | 2.00E-50 | -1.69E-46 |
| MS.gene054542 | MS.gene79602 | 0.801349 | 9.39E-49 | -1.69E-46 |
| MS.gene054930 | MS.gene79602 | 0.802821 | 4.68E-49 | -1.69E-46 |
| MS.gene054942 | MS.gene79602 | 0.811519 | 6.72E-51 | -1.69E-46 |
| MS.gene054983 | MS.gene79602 | 0.804617 | 1.98E-49 | -1.69E-46 |
| MS.gene055604 | MS.gene79602 | 0.810112 | 1.36E-50 | -1.69E-46 |
| MS.gene056612 | MS.gene79602 | 0.808411 | 3.14E-50 | -1.69E-46 |
| MS.gene056979 | MS.gene79602 | 0.814891 | 1.22E-51 | -1.69E-46 |
| MS.gene05702 | MS.gene79602 | 0.80654 | 7.83E-50 | -1.69E-46 |
| MS.gene057754 | MS.gene79602 | 0.852605 | 4.14E-61 | -1.69E-46 |
| MS.gene05811 | MS.gene79602 | 0.816352 | 5.78E-52 | -1.69E-46 |
| MS.gene058142 | MS.gene79602 | 0.830744 | 2.47E-55 | -1.69E-46 |
| MS.gene058182 | MS.gene79602 | 0.805037 | 1.62E-49 | -1.69E-46 |
| MS.gene058749 | MS.gene79602 | 0.821747 | 3.43E-53 | -1.69E-46 |
| MS.gene05907 | MS.gene79602 | 0.8013 | 9.61E-49 | -1.69E-46 |
| MS.gene059518 | MS.gene79602 | 0.806365 | 8.52E-50 | -1.69E-46 |
| MS.gene05984 | MS.gene79602 | 0.808557 | 2.92E-50 | -1.69E-46 |
| MS.gene059894 | MS.gene79602 | 0.833917 | 4.05E-56 | -1.69E-46 |
| MS.gene059899 | MS.gene79602 | 0.800042 | 1.74E-48 | -1.69E-46 |
| MS.gene060297 | MS.gene79602 | 0.822264 | 2.60E-53 | -1.69E-46 |
| MS.gene060476 | MS.gene79602 | 0.84383 | 1.10E-58 | -1.69E-46 |
| MS.gene061049 | MS.gene79602 | 0.850421 | 1.72E-60 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79602.t1 | MTR_7g010210 | 97.479 | 238 | 6 | 0 | 30 | 267 | 88 | 325 | 6.51e-170 | 472 |
| MS.gene79602.t1 | MTR_7g010210 | 70.293 | 239 | 15 | 3 | 30 | 267 | 88 | 271 | 2.31e-109 | 317 |
| MS.gene79602.t1 | MTR_6g012180 | 57.322 | 239 | 73 | 8 | 30 | 256 | 88 | 309 | 9.88e-67 | 210 |
| MS.gene79602.t1 | MTR_3g039990 | 41.667 | 240 | 99 | 9 | 30 | 257 | 89 | 299 | 1.67e-39 | 139 |
| MS.gene79602.t1 | MTR_0140s0030 | 39.526 | 253 | 109 | 11 | 30 | 257 | 89 | 322 | 1.10e-35 | 130 |
| MS.gene79602.t1 | MTR_0489s0020 | 39.526 | 253 | 109 | 11 | 30 | 257 | 89 | 322 | 1.10e-35 | 130 |
| MS.gene79602.t1 | MTR_7g087130 | 28.179 | 291 | 126 | 10 | 7 | 249 | 68 | 323 | 3.95e-15 | 74.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79602.t1 | AT3G28910 | 41.909 | 241 | 99 | 8 | 30 | 250 | 12 | 231 | 3.83e-39 | 137 |
| MS.gene79602.t1 | AT3G28910 | 41.909 | 241 | 99 | 8 | 30 | 250 | 88 | 307 | 1.10e-37 | 135 |
| MS.gene79602.t1 | AT5G62470 | 40.467 | 257 | 111 | 6 | 30 | 251 | 87 | 336 | 3.14e-36 | 132 |
| MS.gene79602.t1 | AT5G62470 | 40.467 | 257 | 111 | 6 | 30 | 251 | 88 | 337 | 3.37e-36 | 132 |
| MS.gene79602.t1 | AT3G47600 | 39.689 | 257 | 112 | 9 | 21 | 251 | 77 | 316 | 6.23e-35 | 128 |
| MS.gene79602.t1 | AT3G47600 | 40.476 | 252 | 97 | 9 | 30 | 251 | 82 | 310 | 7.97e-35 | 128 |
| MS.gene79602.t1 | AT1G74650 | 39.526 | 253 | 99 | 10 | 25 | 249 | 1 | 227 | 2.45e-28 | 108 |
| MS.gene79602.t1 | AT1G74650 | 38.057 | 247 | 100 | 9 | 30 | 249 | 12 | 232 | 9.72e-28 | 107 |
| MS.gene79602.t1 | AT1G74650 | 39.676 | 247 | 96 | 9 | 30 | 249 | 88 | 308 | 9.16e-27 | 106 |
| MS.gene79602.t1 | AT1G08810 | 33.745 | 243 | 77 | 8 | 28 | 252 | 3 | 179 | 1.26e-21 | 89.7 |
| MS.gene79602.t1 | AT1G08810 | 33.745 | 243 | 77 | 8 | 28 | 252 | 3 | 179 | 1.26e-21 | 89.7 |
| MS.gene79602.t1 | AT1G08810 | 32.830 | 265 | 87 | 10 | 7 | 251 | 68 | 261 | 2.34e-21 | 90.9 |
| MS.gene79602.t1 | AT5G15310 | 61.538 | 39 | 15 | 0 | 22 | 60 | 1 | 39 | 9.75e-12 | 63.9 |
Find 41 sgRNAs with CRISPR-Local
Find 87 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGATCATGAATACATTATTT+AGG | 0.228293 | 7.3:-87843333 | MS.gene79602:intron |
| AACATAGCTCGTTTACTAAA+AGG | 0.252975 | 7.3:-87842202 | MS.gene79602:CDS |
| CTTCTTTCCCATTGACCTCT+TGG | 0.294000 | 7.3:+87842385 | None:intergenic |
| AAGAACATGGTCCTGGAAAT+TGG | 0.298566 | 7.3:-87843497 | None:intergenic |
| AGTTGTCCTGAAAAGGTATT+AGG | 0.303742 | 7.3:-87841884 | MS.gene79602:CDS |
| GAAACATTTGAATCTTTGTT+TGG | 0.358400 | 7.3:-87842064 | MS.gene79602:CDS |
| ATGTCATTATCTGTTCTTTG+TGG | 0.377477 | 7.3:+87842520 | None:intergenic |
| GTACTAACCGATGATTTGAT+TGG | 0.381105 | 7.3:+87842166 | None:intergenic |
| GAAAATGAGTTACTATTTGT+AGG | 0.397920 | 7.3:+87842274 | None:intergenic |
| GGAACAGCCCTCCAATTTCC+AGG | 0.403047 | 7.3:+87843486 | None:intergenic |
| TATGAACTATTAACCTGTCT+TGG | 0.426618 | 7.3:+87843461 | None:intergenic |
| AGATTGACCTGGTTCTTTAG+TGG | 0.427373 | 7.3:+87842249 | None:intergenic |
| ATGATCAACAACAGTCCTCT+TGG | 0.437915 | 7.3:+87843349 | None:intergenic |
| CCATTTCTCAAGCAAAGAAA+AGG | 0.449839 | 7.3:+87841922 | None:intergenic |
| TCTTGTAAAACCGTTGCGTC+TGG | 0.450422 | 7.3:+87841980 | None:intergenic |
| AACTATTAACCTGTCTTGGT+TGG | 0.452548 | 7.3:+87843465 | None:intergenic |
| AAGAATTCCAAGAGGTCAAT+GGG | 0.456644 | 7.3:-87842392 | MS.gene79602:CDS |
| AAAGAATTCCAAGAGGTCAA+TGG | 0.463998 | 7.3:-87842393 | MS.gene79602:CDS |
| AAAATGAGTTACTATTTGTA+GGG | 0.472669 | 7.3:+87842275 | None:intergenic |
| AGCAGAATCAAAGTTGTTGA+AGG | 0.476547 | 7.3:+87842120 | None:intergenic |
| TGAAGCAAGTTGTCCTGAAA+AGG | 0.483879 | 7.3:-87841891 | MS.gene79602:CDS |
| CATTATCTGTTCTTTGTGGA+AGG | 0.487830 | 7.3:+87842524 | None:intergenic |
| ATTGATTCTGAACCAACATC+AGG | 0.495731 | 7.3:+87841947 | None:intergenic |
| TATATACAAGAACATGGTCC+TGG | 0.507906 | 7.3:-87843504 | None:intergenic |
| TTTGATTCTGCTTCTAGTAG+TGG | 0.508963 | 7.3:-87842109 | MS.gene79602:CDS |
| AGGGCTGTTCCAACCAAGAC+AGG | 0.512302 | 7.3:-87843474 | MS.gene79602:intron |
| AAGCTCAAGAAATCACAAAC+AGG | 0.513721 | 7.3:-87842466 | MS.gene79602:CDS |
| TAGCTCGTTTACTAAAAGGT+TGG | 0.524179 | 7.3:-87842198 | MS.gene79602:CDS |
| TGCTTCTAGTAGTGGAACAA+AGG | 0.546510 | 7.3:-87842101 | MS.gene79602:CDS |
| ACTTCAAACAGATATTCAAA+TGG | 0.548282 | 7.3:-87842362 | MS.gene79602:CDS |
| ATCTTTGTCACCAGACGCAA+CGG | 0.551917 | 7.3:-87841990 | MS.gene79602:CDS |
| CCTGAAAAGGTATTAGGTTG+TGG | 0.555878 | 7.3:-87841878 | MS.gene79602:CDS |
| CATTTCTCAAGCAAAGAAAA+GGG | 0.562614 | 7.3:+87841923 | None:intergenic |
| GCTTCTAGTAGTGGAACAAA+GGG | 0.568848 | 7.3:-87842100 | MS.gene79602:CDS |
| GATGAAAGTAAGCCTGATGT+TGG | 0.577667 | 7.3:-87841959 | MS.gene79602:CDS |
| GATGATTCCAAAGACTCCAA+AGG | 0.605819 | 7.3:+87842034 | None:intergenic |
| AACATGGTCCTGGAAATTGG+AGG | 0.614224 | 7.3:-87843494 | MS.gene79602:CDS |
| ACATGGTCCTGGAAATTGGA+GGG | 0.621706 | 7.3:-87843493 | MS.gene79602:CDS |
| TAGGAAAATCATGATCCAAG+AGG | 0.661671 | 7.3:-87843364 | MS.gene79602:CDS |
| GAAAAGGTATTAGGTTGTGG+TGG | 0.702340 | 7.3:-87841875 | MS.gene79602:CDS |
| GCATCTCAAAGAATTCCAAG+AGG | 0.704482 | 7.3:-87842400 | MS.gene79602:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAACTACTAAAAAAAT+TGG | + | chr7.3:87842722-87842741 | None:intergenic | 10.0% |
| !! | ATACAAAAAATTATAGAAAT+AGG | + | chr7.3:87842581-87842600 | None:intergenic | 10.0% |
| !! | TACAAAAAATTATAGAAATA+GGG | + | chr7.3:87842580-87842599 | None:intergenic | 10.0% |
| !!! | ATTAATTTATTTGATTTTTG+TGG | - | chr7.3:87842115-87842134 | MS.gene79602:CDS | 10.0% |
| !!! | CAAATTATTTATTTGTTTTA+AGG | - | chr7.3:87842329-87842348 | MS.gene79602:CDS | 10.0% |
| !!! | TTTTATTTTTATTACTTAAC+TGG | - | chr7.3:87842034-87842053 | MS.gene79602:CDS | 10.0% |
| !!! | TTTTTTAGTAGTTTTTTTTT+TGG | - | chr7.3:87842724-87842743 | MS.gene79602:intron | 10.0% |
| !! | ATAATGACATAAAAAACTAT+TGG | - | chr7.3:87842837-87842856 | MS.gene79602:intron | 15.0% |
| !! | TTTAAATATCCCTAAAAAAA+AGG | - | chr7.3:87842622-87842641 | MS.gene79602:intron | 15.0% |
| !!! | AAATTAGAAGATAATTTTTG+TGG | + | chr7.3:87843037-87843056 | None:intergenic | 15.0% |
| !! | AAAATGAGTTACTATTTGTA+GGG | + | chr7.3:87843072-87843091 | None:intergenic | 20.0% |
| !! | ATCTTTATGGAATTAAAAAC+AGG | + | chr7.3:87842499-87842518 | None:intergenic | 20.0% |
| !! | GTATATCATAGATCATTAAT+AGG | - | chr7.3:87841961-87841980 | MS.gene79602:CDS | 20.0% |
| !! | TGATCATGAATACATTATTT+AGG | - | chr7.3:87842011-87842030 | MS.gene79602:CDS | 20.0% |
| !! | TTATGAAAGAATATAAGTGT+TGG | - | chr7.3:87842527-87842546 | MS.gene79602:CDS | 20.0% |
| !!! | AGCATTTGATTTCATTTTTT+AGG | - | chr7.3:87842423-87842442 | MS.gene79602:CDS | 20.0% |
| !!! | ATTAAATTTAGGACATAAGT+TGG | - | chr7.3:87842463-87842482 | MS.gene79602:CDS | 20.0% |
| !!! | ATTAGCAAATCCTTTTTTTT+AGG | + | chr7.3:87842635-87842654 | None:intergenic | 20.0% |
| !!! | TTAGCAAATCCTTTTTTTTA+GGG | + | chr7.3:87842634-87842653 | None:intergenic | 20.0% |
| !!! | TTTTGTGGATTAATTTTTCA+GGG | - | chr7.3:87842130-87842149 | MS.gene79602:CDS | 20.0% |
| !!! | TTTTTGTGGATTAATTTTTC+AGG | - | chr7.3:87842129-87842148 | MS.gene79602:CDS | 20.0% |
| ! | AACATTTATGATGTAACAGA+TGG | - | chr7.3:87842780-87842799 | MS.gene79602:intron | 25.0% |
| ! | ACATTTATGATGTAACAGAT+GGG | - | chr7.3:87842781-87842800 | MS.gene79602:intron | 25.0% |
| ! | ACTTCAAACAGATATTCAAA+TGG | - | chr7.3:87842982-87843001 | MS.gene79602:intron | 25.0% |
| ! | AGGGATATTTAAATCCATTT+AGG | + | chr7.3:87842615-87842634 | None:intergenic | 25.0% |
| ! | AGTAGCAAATTATGAAGAAA+AGG | + | chr7.3:87842289-87842308 | None:intergenic | 25.0% |
| ! | CATAACTAGTACTATCTTTA+TGG | + | chr7.3:87842512-87842531 | None:intergenic | 25.0% |
| ! | GAAAAATCCAATCAAATCAT+CGG | - | chr7.3:87843171-87843190 | MS.gene79602:intron | 25.0% |
| ! | GAAAATGAGTTACTATTTGT+AGG | + | chr7.3:87843073-87843092 | None:intergenic | 25.0% |
| ! | GAAACATTTGAATCTTTGTT+TGG | - | chr7.3:87843280-87843299 | MS.gene79602:intron | 25.0% |
| ! | TAGGGACACAAATTAAAAAT+AGG | + | chr7.3:87842562-87842581 | None:intergenic | 25.0% |
| ! | TATATTAGACTTGTCCTAAA+TGG | - | chr7.3:87842598-87842617 | MS.gene79602:intron | 25.0% |
| !!! | TTCAAGATCTTTTAGGAAAT+AGG | - | chr7.3:87842259-87842278 | MS.gene79602:CDS | 25.0% |
| AACATAGCTCGTTTACTAAA+AGG | - | chr7.3:87843142-87843161 | MS.gene79602:intron | 30.0% | |
| ATGTCATTATCTGTTCTTTG+TGG | + | chr7.3:87842827-87842846 | None:intergenic | 30.0% | |
| CATTTCTCAAGCAAAGAAAA+GGG | + | chr7.3:87843424-87843443 | None:intergenic | 30.0% | |
| TATGAACTATTAACCTGTCT+TGG | + | chr7.3:87841886-87841905 | None:intergenic | 30.0% | |
| TTATGATTCACATGTCTAAC+TGG | - | chr7.3:87842755-87842774 | MS.gene79602:intron | 30.0% | |
| TTCCTAAAAGATCTTGAAGA+TGG | + | chr7.3:87842257-87842276 | None:intergenic | 30.0% | |
| ! | ATCCATCTTCAAGATCTTTT+AGG | - | chr7.3:87842252-87842271 | MS.gene79602:CDS | 30.0% |
| !! | TTAGATGGACTAATTACCTA+AGG | - | chr7.3:87842181-87842200 | MS.gene79602:CDS | 30.0% |
| !!! | TGCTTCATTAAGTGCTTTTT+TGG | + | chr7.3:87843008-87843027 | None:intergenic | 30.0% |
| AAAGAATTCCAAGAGGTCAA+TGG | - | chr7.3:87842951-87842970 | MS.gene79602:intron | 35.0% | |
| AACTATTAACCTGTCTTGGT+TGG | + | chr7.3:87841882-87841901 | None:intergenic | 35.0% | |
| AAGAATTCCAAGAGGTCAAT+GGG | - | chr7.3:87842952-87842971 | MS.gene79602:intron | 35.0% | |
| AAGCTCAAGAAATCACAAAC+AGG | - | chr7.3:87842878-87842897 | MS.gene79602:intron | 35.0% | |
| AGCAGAATCAAAGTTGTTGA+AGG | + | chr7.3:87843227-87843246 | None:intergenic | 35.0% | |
| CATTATCTGTTCTTTGTGGA+AGG | + | chr7.3:87842823-87842842 | None:intergenic | 35.0% | |
| CCATTTCTCAAGCAAAGAAA+AGG | + | chr7.3:87843425-87843444 | None:intergenic | 35.0% | |
| GTACTAACCGATGATTTGAT+TGG | + | chr7.3:87843181-87843200 | None:intergenic | 35.0% | |
| TAGCTCGTTTACTAAAAGGT+TGG | - | chr7.3:87843146-87843165 | MS.gene79602:intron | 35.0% | |
| TAGGAAAATCATGATCCAAG+AGG | - | chr7.3:87841980-87841999 | MS.gene79602:CDS | 35.0% | |
| TTTGATTCTGCTTCTAGTAG+TGG | - | chr7.3:87843235-87843254 | MS.gene79602:intron | 35.0% | |
| ! | ATTGATTCTGAACCAACATC+AGG | + | chr7.3:87843400-87843419 | None:intergenic | 35.0% |
| ! | CCTTTTCTTTGCTTGAGAAA+TGG | - | chr7.3:87843422-87843441 | MS.gene79602:intron | 35.0% |
| ! | TTTTCTTCCACTAAAGAACC+AGG | - | chr7.3:87843088-87843107 | MS.gene79602:intron | 35.0% |
| !! | AGTTGTCCTGAAAAGGTATT+AGG | - | chr7.3:87843460-87843479 | MS.gene79602:intron | 35.0% |
| !!! | TTTGTTTGGTTTTGAGCCTT+TGG | - | chr7.3:87843294-87843313 | MS.gene79602:intron | 35.0% |
| ATGATCAACAACAGTCCTCT+TGG | + | chr7.3:87841998-87842017 | None:intergenic | 40.0% | |
| GATGAAAGTAAGCCTGATGT+TGG | - | chr7.3:87843385-87843404 | MS.gene79602:intron | 40.0% | |
| GATGATTCCAAAGACTCCAA+AGG | + | chr7.3:87843313-87843332 | None:intergenic | 40.0% | |
| GCAAAAGTTGCAGACTTAGA+TGG | - | chr7.3:87842166-87842185 | MS.gene79602:CDS | 40.0% | |
| GCATAGCAAAAAGATTGACC+TGG | + | chr7.3:87843109-87843128 | None:intergenic | 40.0% | |
| GCATCTCAAAGAATTCCAAG+AGG | - | chr7.3:87842944-87842963 | MS.gene79602:intron | 40.0% | |
| TGAAGCAAGTTGTCCTGAAA+AGG | - | chr7.3:87843453-87843472 | MS.gene79602:intron | 40.0% | |
| ! | AGATTGACCTGGTTCTTTAG+TGG | + | chr7.3:87843098-87843117 | None:intergenic | 40.0% |
| ! | CCACAACCTAATACCTTTTC+AGG | + | chr7.3:87843469-87843488 | None:intergenic | 40.0% |
| ! | GCTTCTAGTAGTGGAACAAA+GGG | - | chr7.3:87843244-87843263 | MS.gene79602:intron | 40.0% |
| ! | TGCTTCTAGTAGTGGAACAA+AGG | - | chr7.3:87843243-87843262 | MS.gene79602:intron | 40.0% |
| !! | AAGTTACCCCTTTTGATTCC+TGG | + | chr7.3:87842207-87842226 | None:intergenic | 40.0% |
| !! | CCTGAAAAGGTATTAGGTTG+TGG | - | chr7.3:87843466-87843485 | MS.gene79602:intron | 40.0% |
| !! | GAAAAGGTATTAGGTTGTGG+TGG | - | chr7.3:87843469-87843488 | MS.gene79602:intron | 40.0% |
| !!! | TTTTGAGCCTTTGGAGTCTT+TGG | - | chr7.3:87843303-87843322 | MS.gene79602:intron | 40.0% |
| ACCTAAGGCCAGGAATCAAA+AGG | - | chr7.3:87842196-87842215 | MS.gene79602:CDS | 45.0% | |
| ATCTTTGTCACCAGACGCAA+CGG | - | chr7.3:87843354-87843373 | MS.gene79602:CDS | 45.0% | |
| CCTAAGGCCAGGAATCAAAA+GGG | - | chr7.3:87842197-87842216 | MS.gene79602:CDS | 45.0% | |
| CTAAGGCCAGGAATCAAAAG+GGG | - | chr7.3:87842198-87842217 | MS.gene79602:CDS | 45.0% | |
| CTTCTTTCCCATTGACCTCT+TGG | + | chr7.3:87842962-87842981 | None:intergenic | 45.0% | |
| GGGTAACTTCACTGAACAAG+AGG | - | chr7.3:87842218-87842237 | MS.gene79602:CDS | 45.0% | |
| TCTTGTAAAACCGTTGCGTC+TGG | + | chr7.3:87843367-87843386 | None:intergenic | 45.0% | |
| TGGACTAATTACCTAAGGCC+AGG | - | chr7.3:87842186-87842205 | MS.gene79602:CDS | 45.0% | |
| !! | TTCATTAAAATTATATTTAT+TGG | - | chr7.3:87841919-87841938 | MS.gene79602:CDS | 5.0% |
| !!! | AAATTTAATTTTACAAAAAT+TGG | + | chr7.3:87842452-87842471 | None:intergenic | 5.0% |
| !!! | ATTTTTGTAAAATTAAATTT+AGG | - | chr7.3:87842452-87842471 | MS.gene79602:CDS | 5.0% |
| !! | CCCTTTTGATTCCTGGCCTT+AGG | + | chr7.3:87842200-87842219 | None:intergenic | 50.0% |
| AGGGCTGTTCCAACCAAGAC+AGG | - | chr7.3:87841870-87841889 | MS.gene79602:CDS | 55.0% | |
| GGAACAGCCCTCCAATTTCC+AGG | + | chr7.3:87841861-87841880 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 87841853 | 87843513 | 87841853 | ID=MS.gene79602 |
| chr7.3 | mRNA | 87841853 | 87843513 | 87841853 | ID=MS.gene79602.t1;Parent=MS.gene79602 |
| chr7.3 | exon | 87843475 | 87843513 | 87843475 | ID=MS.gene79602.t1.exon1;Parent=MS.gene79602.t1 |
| chr7.3 | CDS | 87843475 | 87843513 | 87843475 | ID=cds.MS.gene79602.t1;Parent=MS.gene79602.t1 |
| chr7.3 | exon | 87843334 | 87843383 | 87843334 | ID=MS.gene79602.t1.exon2;Parent=MS.gene79602.t1 |
| chr7.3 | CDS | 87843334 | 87843383 | 87843334 | ID=cds.MS.gene79602.t1;Parent=MS.gene79602.t1 |
| chr7.3 | exon | 87841853 | 87842567 | 87841853 | ID=MS.gene79602.t1.exon3;Parent=MS.gene79602.t1 |
| chr7.3 | CDS | 87841853 | 87842567 | 87841853 | ID=cds.MS.gene79602.t1;Parent=MS.gene79602.t1 |
| Gene Sequence |
| Protein sequence |
