Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81766.t1 | XP_013467964.1 | 98 | 306 | 5 | 1 | 1 | 306 | 1 | 305 | 2.70E-146 | 528.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81766.t1 | Q8VYD8 | 69.2 | 305 | 82 | 3 | 5 | 306 | 20 | 315 | 4.3e-92 | 339.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81766.t1 | A0A072VK52 | 98.0 | 306 | 5 | 1 | 1 | 306 | 1 | 305 | 2.0e-146 | 528.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049369 | MS.gene81766 | 0.808638 | 2.81E-50 | -1.69E-46 |
| MS.gene049427 | MS.gene81766 | 0.83756 | 4.84E-57 | -1.69E-46 |
| MS.gene049805 | MS.gene81766 | 0.826632 | 2.44E-54 | -1.69E-46 |
| MS.gene051666 | MS.gene81766 | 0.816548 | 5.23E-52 | -1.69E-46 |
| MS.gene051692 | MS.gene81766 | 0.869576 | 2.79E-66 | -1.69E-46 |
| MS.gene052322 | MS.gene81766 | 0.825811 | 3.82E-54 | -1.69E-46 |
| MS.gene052421 | MS.gene81766 | 0.817538 | 3.13E-52 | -1.69E-46 |
| MS.gene052481 | MS.gene81766 | 0.819852 | 9.34E-53 | -1.69E-46 |
| MS.gene052484 | MS.gene81766 | 0.808098 | 3.66E-50 | -1.69E-46 |
| MS.gene052485 | MS.gene81766 | 0.831808 | 1.35E-55 | -1.69E-46 |
| MS.gene052615 | MS.gene81766 | 0.808177 | 3.52E-50 | -1.69E-46 |
| MS.gene053322 | MS.gene81766 | 0.806374 | 8.49E-50 | -1.69E-46 |
| MS.gene054123 | MS.gene81766 | 0.816408 | 5.62E-52 | -1.69E-46 |
| MS.gene054408 | MS.gene81766 | 0.81274 | 3.64E-51 | -1.69E-46 |
| MS.gene05505 | MS.gene81766 | 0.809515 | 1.82E-50 | -1.69E-46 |
| MS.gene055412 | MS.gene81766 | 0.829194 | 5.90E-55 | -1.69E-46 |
| MS.gene056374 | MS.gene81766 | 0.800133 | 1.66E-48 | -1.69E-46 |
| MS.gene056609 | MS.gene81766 | 0.81104 | 8.54E-51 | -1.69E-46 |
| MS.gene056897 | MS.gene81766 | 0.858264 | 9.28E-63 | -1.69E-46 |
| MS.gene057124 | MS.gene81766 | 0.807461 | 5.00E-50 | -1.69E-46 |
| MS.gene057856 | MS.gene81766 | 0.804506 | 2.09E-49 | -1.69E-46 |
| MS.gene058660 | MS.gene81766 | 0.807802 | 4.23E-50 | -1.69E-46 |
| MS.gene058928 | MS.gene81766 | 0.804464 | 2.13E-49 | -1.69E-46 |
| MS.gene059536 | MS.gene81766 | 0.808897 | 2.47E-50 | -1.69E-46 |
| MS.gene060804 | MS.gene81766 | 0.800209 | 1.60E-48 | -1.69E-46 |
| MS.gene060837 | MS.gene81766 | 0.801416 | 9.10E-49 | -1.69E-46 |
| MS.gene061200 | MS.gene81766 | 0.805523 | 1.28E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene045698 | MS.gene81766 | PPI |
| MS.gene81766 | MS.gene75750 | PPI |
| MS.gene81766 | MS.gene77754 | PPI |
| MS.gene78047 | MS.gene81766 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81766.t1 | MTR_1g059670 | 98.039 | 306 | 5 | 1 | 1 | 306 | 1 | 305 | 0.0 | 610 |
| MS.gene81766.t1 | MTR_4g035650 | 69.231 | 247 | 74 | 1 | 60 | 306 | 68 | 312 | 1.53e-124 | 358 |
| MS.gene81766.t1 | MTR_4g035650 | 68.016 | 247 | 75 | 2 | 60 | 306 | 68 | 310 | 1.01e-120 | 349 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81766.t1 | AT5G06130 | 68.874 | 302 | 88 | 3 | 10 | 306 | 15 | 315 | 3.58e-144 | 409 |
| MS.gene81766.t1 | AT5G06130 | 77.155 | 232 | 52 | 1 | 75 | 306 | 1 | 231 | 1.15e-129 | 369 |
| MS.gene81766.t1 | AT5G61670 | 69.880 | 249 | 73 | 1 | 58 | 306 | 61 | 307 | 6.37e-125 | 359 |
| MS.gene81766.t1 | AT5G61670 | 69.880 | 249 | 73 | 1 | 58 | 306 | 61 | 307 | 6.37e-125 | 359 |
Find 65 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATAAAATCTTTCTTCTTA+TGG | 0.155230 | 1.3:+43307282 | MS.gene81766:CDS |
| ATATCTGCAATAATTGTATT+TGG | 0.197063 | 1.3:+43308184 | MS.gene81766:CDS |
| ATGGCAGCTGGAGCTGAAAT+TGG | 0.211679 | 1.3:+43309153 | MS.gene81766:intron |
| GGAATAGATGATGGAATTTC+CGG | 0.218058 | 1.3:-43307792 | None:intergenic |
| TTTGAACATTAATCCGATTT+CGG | 0.296746 | 1.3:+43309649 | MS.gene81766:CDS |
| TTTCCAGCACCAGAGCAATT+TGG | 0.301546 | 1.3:-43309722 | None:intergenic |
| TTTAAAAGGGGCAAAGAAAA+TGG | 0.310012 | 1.3:-43306984 | None:intergenic |
| TGCATTTGCCTTTGCAACTA+AGG | 0.340206 | 1.3:+43309215 | MS.gene81766:CDS |
| CCCGAAAAGGATGCGACAAT+TGG | 0.359416 | 1.3:-43309378 | None:intergenic |
| TAACTTTGGTGTGATTTCAT+TGG | 0.363903 | 1.3:-43307080 | None:intergenic |
| TGTCCAACCTGCCTTTGCAC+TGG | 0.394247 | 1.3:+43309851 | MS.gene81766:CDS |
| ATTAATCCGATTTCGGCATC+TGG | 0.402233 | 1.3:+43309656 | MS.gene81766:CDS |
| GAAGGAGAGAAAGTATTCAT+TGG | 0.405939 | 1.3:-43306923 | None:intergenic |
| TTGAAGAAGCTCTATCTAAC+AGG | 0.406814 | 1.3:+43308151 | MS.gene81766:CDS |
| ACAAAATCCTGAACCGTCTC+TGG | 0.410773 | 1.3:-43307214 | None:intergenic |
| TGAAGGGCCAGAGACGGTTC+AGG | 0.418010 | 1.3:+43307207 | MS.gene81766:CDS |
| TTTGGACACCTTGTCGTTGT+AGG | 0.425866 | 1.3:-43309704 | None:intergenic |
| CTCACCACATGAGGAAGAAA+AGG | 0.428649 | 1.3:-43307813 | None:intergenic |
| GAAGTACCAGATGCCGAAAT+CGG | 0.441052 | 1.3:-43309662 | None:intergenic |
| TTCAGTACTGATGTTAATTG+AGG | 0.445259 | 1.3:+43309419 | MS.gene81766:CDS |
| TGTCCAAATTGCTCTGGTGC+TGG | 0.448257 | 1.3:+43309719 | MS.gene81766:CDS |
| TAGAGCTTCTTCAAAGTGTT+GGG | 0.450361 | 1.3:-43308142 | None:intergenic |
| CTGGAGCTGAAATTGGGTAT+AGG | 0.452466 | 1.3:+43309160 | MS.gene81766:CDS |
| AGTCAAATGGATCAATTCTC+AGG | 0.456133 | 1.3:-43309898 | None:intergenic |
| AATCTTTCTTCTTATGGAAG+AGG | 0.457917 | 1.3:+43307288 | MS.gene81766:CDS |
| TGCTCTTCTCCACAGGATGC+AGG | 0.457995 | 1.3:+43307055 | MS.gene81766:CDS |
| TGCAAGTATTGCCTTGGAAC+TGG | 0.458275 | 1.3:+43309474 | MS.gene81766:CDS |
| TACTTCTGTTAGACCCCTGC+AGG | 0.461988 | 1.3:+43309679 | MS.gene81766:CDS |
| CATGTAAAGAATTAGTCAAA+TGG | 0.467029 | 1.3:-43309911 | None:intergenic |
| ATAGAGCTTCTTCAAAGTGT+TGG | 0.477201 | 1.3:-43308143 | None:intergenic |
| CTGCAATAATTGTATTTGGC+GGG | 0.477772 | 1.3:+43308188 | MS.gene81766:CDS |
| CAGGTTACTTGGCTTGCGCT+CGG | 0.481171 | 1.3:+43309606 | MS.gene81766:intron |
| GTCCAACCTGCCTTTGCACT+GGG | 0.482552 | 1.3:+43309852 | MS.gene81766:CDS |
| CCGAAAAGGATGCGACAATT+GGG | 0.484141 | 1.3:-43309377 | None:intergenic |
| GCCAACTGCTCCACCCGAAA+AGG | 0.487934 | 1.3:-43309391 | None:intergenic |
| TGGCAGCTGGAGCTGAAATT+GGG | 0.494726 | 1.3:+43309154 | MS.gene81766:intron |
| TATAGGTGGCACGTCATATG+AGG | 0.498079 | 1.3:+43309177 | MS.gene81766:CDS |
| GGAAGAAAAGGAATAGATGA+TGG | 0.501221 | 1.3:-43307801 | None:intergenic |
| TTGTCGTTGTAGGAACCTGC+AGG | 0.508146 | 1.3:-43309694 | None:intergenic |
| AAAGGTAGAATTGTGGAGGA+AGG | 0.517842 | 1.3:-43306941 | None:intergenic |
| ACAAGGTGCAAGTATTGCCT+TGG | 0.523158 | 1.3:+43309468 | MS.gene81766:CDS |
| TGCGCTCGGTGTTCCACAAG+TGG | 0.528281 | 1.3:+43309620 | MS.gene81766:CDS |
| AATTGCGTGCTCTTCTCCAC+AGG | 0.533626 | 1.3:+43307048 | MS.gene81766:CDS |
| ACAAGGTGTCCAAATTGCTC+TGG | 0.537901 | 1.3:+43309713 | MS.gene81766:CDS |
| GTTCAAACATACACCACTTG+TGG | 0.537962 | 1.3:-43309633 | None:intergenic |
| CTTCATCCCAGTGCAAAGGC+AGG | 0.549940 | 1.3:-43309858 | None:intergenic |
| TGGCGGGCTTATTGCACCAA+CGG | 0.550362 | 1.3:+43308204 | MS.gene81766:CDS |
| AAATTGCTCTGGTGCTGGAA+AGG | 0.553692 | 1.3:+43309724 | MS.gene81766:CDS |
| GGAAGATGCAAATGAGATGC+CGG | 0.556353 | 1.3:+43307773 | MS.gene81766:CDS |
| TCTGCAATAATTGTATTTGG+CGG | 0.560108 | 1.3:+43308187 | MS.gene81766:CDS |
| GGAGATTGCGTGTGCAGCAG+CGG | 0.563072 | 1.3:+43307712 | MS.gene81766:CDS |
| ATAGCATACCTTAGTTGCAA+AGG | 0.566228 | 1.3:-43309223 | None:intergenic |
| TGAAGGGAAAGGTAGAATTG+TGG | 0.569401 | 1.3:-43306948 | None:intergenic |
| ATCCCAGTGCAAAGGCAGGT+TGG | 0.571963 | 1.3:-43309854 | None:intergenic |
| TGTCGTTGTAGGAACCTGCA+GGG | 0.577519 | 1.3:-43309693 | None:intergenic |
| CATTATTGAAGGGCCAGAGA+CGG | 0.585450 | 1.3:+43307201 | MS.gene81766:CDS |
| GAGCTGAAATTGGGTATAGG+TGG | 0.607211 | 1.3:+43309163 | MS.gene81766:CDS |
| CCTTTGCACTGGGATGAAGA+TGG | 0.608589 | 1.3:+43309862 | MS.gene81766:CDS |
| TCATTGGAGCCTGCATCCTG+TGG | 0.609087 | 1.3:-43307064 | None:intergenic |
| AGGGAAAGGTAGAATTGTGG+AGG | 0.616825 | 1.3:-43306945 | None:intergenic |
| CCATCTTCATCCCAGTGCAA+AGG | 0.623251 | 1.3:-43309862 | None:intergenic |
| TTGAGCAACAAGAGAAAACA+AGG | 0.624269 | 1.3:+43309451 | MS.gene81766:CDS |
| GTAGAAACATACCAGTTCCA+AGG | 0.632023 | 1.3:-43309485 | None:intergenic |
| GTCGTTGTAGGAACCTGCAG+GGG | 0.684640 | 1.3:-43309692 | None:intergenic |
| TGCAGGTTCCTACAACGACA+AGG | 0.684689 | 1.3:+43309696 | MS.gene81766:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTCTGACAATTTAAATTT+TGG | + | chr1.3:43308670-43308689 | MS.gene81766:intron | 15.0% |
| !!! | ATATTGAATCGTTATTTTAA+TGG | + | chr1.3:43309134-43309153 | MS.gene81766:intron | 15.0% |
| !!! | ATTCTGACAATTTAAATTTT+GGG | + | chr1.3:43308671-43308690 | MS.gene81766:intron | 15.0% |
| !!! | CTTTTATATAAAATCCAAAA+AGG | - | chr1.3:43308548-43308567 | None:intergenic | 15.0% |
| !!! | CTTTTTGGATTTTATATAAA+AGG | + | chr1.3:43308546-43308565 | MS.gene81766:intron | 15.0% |
| !!! | TTAGTTTTTTTTTGCTTATT+GGG | + | chr1.3:43307100-43307119 | MS.gene81766:intron | 15.0% |
| !!! | TTTTGAATAACTTATGAAAA+CGG | - | chr1.3:43307564-43307583 | None:intergenic | 15.0% |
| !! | AAAAAACAATAAATTACCGT+TGG | - | chr1.3:43308223-43308242 | None:intergenic | 20.0% |
| !! | AACTTACTATAAGATATAAG+CGG | - | chr1.3:43307643-43307662 | None:intergenic | 20.0% |
| !! | AAGCAAAAAAAAACTAACTT+TGG | - | chr1.3:43307097-43307116 | None:intergenic | 20.0% |
| !! | AATTAAACAGTTGCATATAT+CGG | - | chr1.3:43309769-43309788 | None:intergenic | 20.0% |
| !! | ATATCTGCAATAATTGTATT+TGG | + | chr1.3:43308184-43308203 | MS.gene81766:CDS | 20.0% |
| !! | ATTTCTTTCATTCTGATAAA+TGG | - | chr1.3:43309279-43309298 | None:intergenic | 20.0% |
| !! | CAATAAAATCTTTCTTCTTA+TGG | + | chr1.3:43307282-43307301 | MS.gene81766:CDS | 20.0% |
| !! | TAACGATTCAATATTTGAAA+TGG | - | chr1.3:43309128-43309147 | None:intergenic | 20.0% |
| !! | TAGTTTAAATAAGACACTTA+AGG | + | chr1.3:43307937-43307956 | MS.gene81766:intron | 20.0% |
| !! | TATTTGGCATAGAATAAAAA+AGG | - | chr1.3:43308246-43308265 | None:intergenic | 20.0% |
| !! | TTGACTTAGAAAAAGAAAAT+TGG | - | chr1.3:43307024-43307043 | None:intergenic | 20.0% |
| !!! | AAATTTGTAATTTTATGGAC+AGG | + | chr1.3:43309587-43309606 | MS.gene81766:intron | 20.0% |
| !!! | AATTTTCTTTTTCTAAGTCA+AGG | + | chr1.3:43307023-43307042 | MS.gene81766:CDS | 20.0% |
| !!! | GTTAGTTTTTTTTTGCTTAT+TGG | + | chr1.3:43307099-43307118 | MS.gene81766:intron | 20.0% |
| !!! | TGTAATTTAGGTTGATTATT+TGG | - | chr1.3:43308262-43308281 | None:intergenic | 20.0% |
| !!! | TTCTGACAATTTAAATTTTG+GGG | + | chr1.3:43308672-43308691 | MS.gene81766:intron | 20.0% |
| ! | AATCAGTAGCAAACTATAAT+AGG | - | chr1.3:43308473-43308492 | None:intergenic | 25.0% |
| ! | ACTAGTAGTACATAAAGTAT+AGG | + | chr1.3:43308812-43308831 | MS.gene81766:intron | 25.0% |
| ! | ACTTTCAAATTAACTTCAGT+GGG | - | chr1.3:43308514-43308533 | None:intergenic | 25.0% |
| ! | AGTACTTAAAGATATTGGTA+TGG | - | chr1.3:43307889-43307908 | None:intergenic | 25.0% |
| ! | AGTTATAGCAAATAGCATAA+AGG | - | chr1.3:43308795-43308814 | None:intergenic | 25.0% |
| ! | ATATGTGCTAACTTGAATTT+AGG | + | chr1.3:43308717-43308736 | MS.gene81766:intron | 25.0% |
| ! | CAAAAGATACAATAAAATCC+TGG | + | chr1.3:43307455-43307474 | MS.gene81766:intron | 25.0% |
| ! | CAAAATTTAAACTTTGCAAC+TGG | + | chr1.3:43307139-43307158 | MS.gene81766:intron | 25.0% |
| ! | CTTAGAAAAAGAAAATTGGT+TGG | - | chr1.3:43307020-43307039 | None:intergenic | 25.0% |
| ! | GTTATAGCAAATAGCATAAA+GGG | - | chr1.3:43308794-43308813 | None:intergenic | 25.0% |
| ! | TAAATGAGAAGAATGGATAA+AGG | + | chr1.3:43308628-43308647 | MS.gene81766:intron | 25.0% |
| ! | TCTTCAGTACTTAAAGATAT+TGG | - | chr1.3:43307894-43307913 | None:intergenic | 25.0% |
| ! | TGACACTATTTAATGAACTA+TGG | - | chr1.3:43307328-43307347 | None:intergenic | 25.0% |
| ! | TTCATCTTAAATGAGAAGAA+TGG | + | chr1.3:43308621-43308640 | MS.gene81766:intron | 25.0% |
| ! | TTTGAACATTAATCCGATTT+CGG | + | chr1.3:43309649-43309668 | MS.gene81766:CDS | 25.0% |
| !! | CAATTCTAGAAAGAATAGAA+AGG | - | chr1.3:43309556-43309575 | None:intergenic | 25.0% |
| !! | CATAAAAGTATGAGTTAACA+TGG | - | chr1.3:43308440-43308459 | None:intergenic | 25.0% |
| !! | CATGTTAACTCATACTTTTA+TGG | + | chr1.3:43308438-43308457 | MS.gene81766:intron | 25.0% |
| !! | TCTTCTCATTTAAGATGAAA+AGG | - | chr1.3:43308620-43308639 | None:intergenic | 25.0% |
| !!! | GTCATATGTGTTTTTTGTTT+AGG | + | chr1.3:43309823-43309842 | MS.gene81766:intron | 25.0% |
| !!! | TGGTTTTACTACCTTTAAAA+GGG | - | chr1.3:43307000-43307019 | None:intergenic | 25.0% |
| !!! | TTGGTTTTACTACCTTTAAA+AGG | - | chr1.3:43307001-43307020 | None:intergenic | 25.0% |
| AAAGGTAAATGTGAGTGAAT+TGG | - | chr1.3:43309021-43309040 | None:intergenic | 30.0% | |
| AATCTTTCTTCTTATGGAAG+AGG | + | chr1.3:43307288-43307307 | MS.gene81766:CDS | 30.0% | |
| ATTGTCTCTATTTGTCTCAT+AGG | + | chr1.3:43308307-43308326 | MS.gene81766:intron | 30.0% | |
| ATTTATGAAACTGTGACTCT+AGG | + | chr1.3:43308936-43308955 | MS.gene81766:intron | 30.0% | |
| CACTTTCAAATTAACTTCAG+TGG | - | chr1.3:43308515-43308534 | None:intergenic | 30.0% | |
| CCAATAGCTTAATCAAAACA+AGG | - | chr1.3:43307847-43307866 | None:intergenic | 30.0% | |
| CGCTATGTTAAGTTTAAATC+TGG | + | chr1.3:43308364-43308383 | MS.gene81766:intron | 30.0% | |
| CTTATGAAAATAAGCTATCC+TGG | + | chr1.3:43307482-43307501 | MS.gene81766:intron | 30.0% | |
| CTTTCAAATTAACTTCAGTG+GGG | - | chr1.3:43308513-43308532 | None:intergenic | 30.0% | |
| GATAAGTAGAGAAATCTCAA+GGG | + | chr1.3:43308969-43308988 | MS.gene81766:intron | 30.0% | |
| TCCTTTGTTACTCTCTATAA+CGG | + | chr1.3:43308339-43308358 | MS.gene81766:intron | 30.0% | |
| TCTGCAATAATTGTATTTGG+CGG | + | chr1.3:43308187-43308206 | MS.gene81766:CDS | 30.0% | |
| TGACTAATGAGAAATGAGTA+TGG | + | chr1.3:43307682-43307701 | MS.gene81766:intron | 30.0% | |
| TTCGATAGATGAGAAACAAA+AGG | - | chr1.3:43308044-43308063 | None:intergenic | 30.0% | |
| TTTAAAAGGGGCAAAGAAAA+TGG | - | chr1.3:43306987-43307006 | None:intergenic | 30.0% | |
| TTTATCATTTGCTCTTAGAC+AGG | - | chr1.3:43308749-43308768 | None:intergenic | 30.0% | |
| ! | AATTTTATGGACAGGTTACT+TGG | + | chr1.3:43309595-43309614 | MS.gene81766:intron | 30.0% |
| ! | ACTCACATTTACCTTTTAAG+TGG | + | chr1.3:43309025-43309044 | MS.gene81766:intron | 30.0% |
| ! | AGCAACTTTTGCATTATTGA+AGG | + | chr1.3:43307190-43307209 | MS.gene81766:intron | 30.0% |
| ! | ATTTTCTTTGCCCCTTTTAA+AGG | + | chr1.3:43306986-43307005 | MS.gene81766:CDS | 30.0% |
| ! | CTTTTATGAGACCACTTAAA+AGG | - | chr1.3:43309039-43309058 | None:intergenic | 30.0% |
| ! | GCAACTTTTGCATTATTGAA+GGG | + | chr1.3:43307191-43307210 | MS.gene81766:intron | 30.0% |
| ! | TAACTTTGGTGTGATTTCAT+TGG | - | chr1.3:43307083-43307102 | None:intergenic | 30.0% |
| ! | TTTAAATCTGGCTTAGATTC+TGG | + | chr1.3:43308376-43308395 | MS.gene81766:intron | 30.0% |
| !! | ACACTAAAAGAGTATTAAGG+AGG | - | chr1.3:43308879-43308898 | None:intergenic | 30.0% |
| !! | CTTATTTTCATAAGTACTCC+AGG | - | chr1.3:43307476-43307495 | None:intergenic | 30.0% |
| !! | GGTTTTACTACCTTTAAAAG+GGG | - | chr1.3:43306999-43307018 | None:intergenic | 30.0% |
| !! | TTCAGTACTGATGTTAATTG+AGG | + | chr1.3:43309419-43309438 | MS.gene81766:CDS | 30.0% |
| !!! | AGTGTTGATTTCTACCTTTT+TGG | + | chr1.3:43308531-43308550 | MS.gene81766:intron | 30.0% |
| !!! | CCTTGTTTTGATTAAGCTAT+TGG | + | chr1.3:43307844-43307863 | MS.gene81766:intron | 30.0% |
| AGTCAAATGGATCAATTCTC+AGG | - | chr1.3:43309901-43309920 | None:intergenic | 35.0% | |
| ATAGAGCTTCTTCAAAGTGT+TGG | - | chr1.3:43308146-43308165 | None:intergenic | 35.0% | |
| ATAGCATACCTTAGTTGCAA+AGG | - | chr1.3:43309226-43309245 | None:intergenic | 35.0% | |
| CAGTAGCAAACTATAATAGG+AGG | - | chr1.3:43308470-43308489 | None:intergenic | 35.0% | |
| CGATAAGTAGAGAAATCTCA+AGG | + | chr1.3:43308968-43308987 | MS.gene81766:intron | 35.0% | |
| CTGCAATAATTGTATTTGGC+GGG | + | chr1.3:43308188-43308207 | MS.gene81766:CDS | 35.0% | |
| GAACCAAACAAATTGTGATC+AGG | - | chr1.3:43309338-43309357 | None:intergenic | 35.0% | |
| GATAGACACTCGTGTAATTT+AGG | - | chr1.3:43308274-43308293 | None:intergenic | 35.0% | |
| GCATATATCGGCAAGAATTA+AGG | - | chr1.3:43309757-43309776 | None:intergenic | 35.0% | |
| GGAAGAAAAGGAATAGATGA+TGG | - | chr1.3:43307804-43307823 | None:intergenic | 35.0% | |
| TAATGAGAAATGAGTATGGC+AGG | + | chr1.3:43307686-43307705 | MS.gene81766:intron | 35.0% | |
| TCCGTTATAGAGAGTAACAA+AGG | - | chr1.3:43308343-43308362 | None:intergenic | 35.0% | |
| TTGAAGAAGCTCTATCTAAC+AGG | + | chr1.3:43308151-43308170 | MS.gene81766:CDS | 35.0% | |
| TTGAGCAACAAGAGAAAACA+AGG | + | chr1.3:43309451-43309470 | MS.gene81766:CDS | 35.0% | |
| TTTCATAAATCAGACCCCAA+AGG | - | chr1.3:43308926-43308945 | None:intergenic | 35.0% | |
| TTTCTACACTGAAGTTGAAC+TGG | + | chr1.3:43309501-43309520 | MS.gene81766:intron | 35.0% | |
| TTTGTAAAACATTGAGCCGT+AGG | + | chr1.3:43308838-43308857 | MS.gene81766:intron | 35.0% | |
| ! | ACAAAGAGCTTTTAGTGAAG+AGG | + | chr1.3:43307746-43307765 | MS.gene81766:CDS | 35.0% |
| ! | ATGCCTGATCACAATTTGTT+TGG | + | chr1.3:43309332-43309351 | MS.gene81766:intron | 35.0% |
| ! | CAAAGAGCTTTTAGTGAAGA+GGG | + | chr1.3:43307747-43307766 | MS.gene81766:CDS | 35.0% |
| ! | GGCAAAGAAAATGGAGTTTT+TGG | - | chr1.3:43306978-43306997 | None:intergenic | 35.0% |
| ! | TAAGATATAAGCGGCTTGTT+TGG | - | chr1.3:43307634-43307653 | None:intergenic | 35.0% |
| ! | TAGAGCTTCTTCAAAGTGTT+GGG | - | chr1.3:43308145-43308164 | None:intergenic | 35.0% |
| ! | TATTCCTTTTCTTCCTCATG+TGG | + | chr1.3:43307809-43307828 | MS.gene81766:CDS | 35.0% |
| ! | TCAACTAATTCCGTGCTTTT+CGG | + | chr1.3:43308106-43308125 | MS.gene81766:intron | 35.0% |
| !! | GGAATAGATGATGGAATTTC+CGG | - | chr1.3:43307795-43307814 | None:intergenic | 35.0% |
| !! | GGGACACTAAAAGAGTATTA+AGG | - | chr1.3:43308882-43308901 | None:intergenic | 35.0% |
| !! | GTATTCGAAATGAGAGCATT+TGG | + | chr1.3:43308072-43308091 | MS.gene81766:intron | 35.0% |
| !! | TTTTTGGTATGTGAAGGGAA+AGG | - | chr1.3:43306962-43306981 | None:intergenic | 35.0% |
| !!! | ATCGTTATTTTAATGGCAGC+TGG | + | chr1.3:43309141-43309160 | MS.gene81766:intron | 35.0% |
| !!! | ATGGAGTTTTTGGTATGTGA+AGG | - | chr1.3:43306968-43306987 | None:intergenic | 35.0% |
| !!! | GTTTTAAAACTCACCACATG+AGG | - | chr1.3:43307825-43307844 | None:intergenic | 35.0% |
| !!! | TGGAGTTTTTGGTATGTGAA+GGG | - | chr1.3:43306967-43306986 | None:intergenic | 35.0% |
| AAAGGTAGAATTGTGGAGGA+AGG | - | chr1.3:43306944-43306963 | None:intergenic | 40.0% | |
| AAGGTGTACCCCATTGTTAT+GGG | - | chr1.3:43308907-43308926 | None:intergenic | 40.0% | |
| AGAAATGAGTATGGCAGGTT+AGG | + | chr1.3:43307691-43307710 | MS.gene81766:intron | 40.0% | |
| ATAACAATGGGGTACACCTT+TGG | + | chr1.3:43308907-43308926 | MS.gene81766:intron | 40.0% | |
| ATTAATCCGATTTCGGCATC+TGG | + | chr1.3:43309656-43309675 | MS.gene81766:CDS | 40.0% | |
| CTACTTCAATCCGAAAAGCA+CGG | - | chr1.3:43308119-43308138 | None:intergenic | 40.0% | |
| GTAGAAACATACCAGTTCCA+AGG | - | chr1.3:43309488-43309507 | None:intergenic | 40.0% | |
| GTTCAAACATACACCACTTG+TGG | - | chr1.3:43309636-43309655 | None:intergenic | 40.0% | |
| TAACAATGGGGTACACCTTT+GGG | + | chr1.3:43308908-43308927 | MS.gene81766:intron | 40.0% | |
| TGAAGGGAAAGGTAGAATTG+TGG | - | chr1.3:43306951-43306970 | None:intergenic | 40.0% | |
| TGCATTTGCCTTTGCAACTA+AGG | + | chr1.3:43309215-43309234 | MS.gene81766:CDS | 40.0% | |
| ! | AAAGGTGTACCCCATTGTTA+TGG | - | chr1.3:43308908-43308927 | None:intergenic | 40.0% |
| ! | TCAGGATTTTGTTCAGATGC+AGG | + | chr1.3:43307225-43307244 | MS.gene81766:CDS | 40.0% |
| !! | GGGGTGCAAGTTTTAGTATA+AGG | + | chr1.3:43308691-43308710 | MS.gene81766:intron | 40.0% |
| AACAATGGGGTACACCTTTG+GGG | + | chr1.3:43308909-43308928 | MS.gene81766:intron | 45.0% | |
| ACAAAATCCTGAACCGTCTC+TGG | - | chr1.3:43307217-43307236 | None:intergenic | 45.0% | |
| AGGGAAAGGTAGAATTGTGG+AGG | - | chr1.3:43306948-43306967 | None:intergenic | 45.0% | |
| AGTGTCCCAACCCATAACAA+TGG | + | chr1.3:43308894-43308913 | MS.gene81766:intron | 45.0% | |
| CATTATTGAAGGGCCAGAGA+CGG | + | chr1.3:43307201-43307220 | MS.gene81766:CDS | 45.0% | |
| CCGAAAAGGATGCGACAATT+GGG | - | chr1.3:43309380-43309399 | None:intergenic | 45.0% | |
| CTCACCACATGAGGAAGAAA+AGG | - | chr1.3:43307816-43307835 | None:intergenic | 45.0% | |
| CTGGAGCTGAAATTGGGTAT+AGG | + | chr1.3:43309160-43309179 | MS.gene81766:CDS | 45.0% | |
| GACAATTGGGTCAACTTGAC+TGG | - | chr1.3:43309367-43309386 | None:intergenic | 45.0% | |
| GAGCTGAAATTGGGTATAGG+TGG | + | chr1.3:43309163-43309182 | MS.gene81766:CDS | 45.0% | |
| GGAAGATGCAAATGAGATGC+CGG | + | chr1.3:43307773-43307792 | MS.gene81766:CDS | 45.0% | |
| GTACCCCATTGTTATGGGTT+GGG | - | chr1.3:43308902-43308921 | None:intergenic | 45.0% | |
| GTAGAGAAATCTCAAGGGTG+AGG | + | chr1.3:43308974-43308993 | MS.gene81766:intron | 45.0% | |
| GTGTCCCAACCCATAACAAT+GGG | + | chr1.3:43308895-43308914 | MS.gene81766:intron | 45.0% | |
| TATAGGTGGCACGTCATATG+AGG | + | chr1.3:43309177-43309196 | MS.gene81766:CDS | 45.0% | |
| TGTACCCCATTGTTATGGGT+TGG | - | chr1.3:43308903-43308922 | None:intergenic | 45.0% | |
| TGTCCCAACCCATAACAATG+GGG | + | chr1.3:43308896-43308915 | MS.gene81766:intron | 45.0% | |
| TTTCCAGCACCAGAGCAATT+TGG | - | chr1.3:43309725-43309744 | None:intergenic | 45.0% | |
| TTTGGACACCTTGTCGTTGT+AGG | - | chr1.3:43309707-43309726 | None:intergenic | 45.0% | |
| ! | AAATTGCTCTGGTGCTGGAA+AGG | + | chr1.3:43309724-43309743 | MS.gene81766:CDS | 45.0% |
| ! | ACAAGGTGCAAGTATTGCCT+TGG | + | chr1.3:43309468-43309487 | MS.gene81766:CDS | 45.0% |
| ! | ACAAGGTGTCCAAATTGCTC+TGG | + | chr1.3:43309713-43309732 | MS.gene81766:CDS | 45.0% |
| ! | AGAGTATTAAGGAGGTCCCA+GGG | - | chr1.3:43308871-43308890 | None:intergenic | 45.0% |
| ! | AGCTTTTAGTGAAGAGGGAG+AGG | + | chr1.3:43307752-43307771 | MS.gene81766:CDS | 45.0% |
| ! | CCAATTGTCGCATCCTTTTC+GGG | + | chr1.3:43309378-43309397 | MS.gene81766:CDS | 45.0% |
| ! | CCCAATTGTCGCATCCTTTT+CGG | + | chr1.3:43309377-43309396 | MS.gene81766:CDS | 45.0% |
| ! | GAAGTACCAGATGCCGAAAT+CGG | - | chr1.3:43309665-43309684 | None:intergenic | 45.0% |
| ! | TGCAAGTATTGCCTTGGAAC+TGG | + | chr1.3:43309474-43309493 | MS.gene81766:CDS | 45.0% |
| ! | TTTTGTTCAGATGCAGGTGC+AGG | + | chr1.3:43307231-43307250 | MS.gene81766:CDS | 45.0% |
| !! | AAGAGTATTAAGGAGGTCCC+AGG | - | chr1.3:43308872-43308891 | None:intergenic | 45.0% |
| !!! | TTATAAAATTTGTAATTTTA+TGG | + | chr1.3:43309582-43309601 | MS.gene81766:intron | 5.0% |
| AATTGCGTGCTCTTCTCCAC+AGG | + | chr1.3:43307048-43307067 | MS.gene81766:CDS | 50.0% | |
| ATGGCAGCTGGAGCTGAAAT+TGG | + | chr1.3:43309153-43309172 | MS.gene81766:intron | 50.0% | |
| CCATCTTCATCCCAGTGCAA+AGG | - | chr1.3:43309865-43309884 | None:intergenic | 50.0% | |
| CCCGAAAAGGATGCGACAAT+TGG | - | chr1.3:43309381-43309400 | None:intergenic | 50.0% | |
| CCTTTGCACTGGGATGAAGA+TGG | + | chr1.3:43309862-43309881 | MS.gene81766:CDS | 50.0% | |
| TACTTCTGTTAGACCCCTGC+AGG | + | chr1.3:43309679-43309698 | MS.gene81766:CDS | 50.0% | |
| TGCAGGTTCCTACAACGACA+AGG | + | chr1.3:43309696-43309715 | MS.gene81766:CDS | 50.0% | |
| TGGCAGCTGGAGCTGAAATT+GGG | + | chr1.3:43309154-43309173 | MS.gene81766:intron | 50.0% | |
| TGTCCAAATTGCTCTGGTGC+TGG | + | chr1.3:43309719-43309738 | MS.gene81766:CDS | 50.0% | |
| TGTCGTTGTAGGAACCTGCA+GGG | - | chr1.3:43309696-43309715 | None:intergenic | 50.0% | |
| TTGTCGTTGTAGGAACCTGC+AGG | - | chr1.3:43309697-43309716 | None:intergenic | 50.0% | |
| !! | ATTGTCGCATCCTTTTCGGG+TGG | + | chr1.3:43309381-43309400 | MS.gene81766:CDS | 50.0% |
| ATCCCAGTGCAAAGGCAGGT+TGG | - | chr1.3:43309857-43309876 | None:intergenic | 55.0% | |
| CTTCATCCCAGTGCAAAGGC+AGG | - | chr1.3:43309861-43309880 | None:intergenic | 55.0% | |
| GTCCAACCTGCCTTTGCACT+GGG | + | chr1.3:43309852-43309871 | MS.gene81766:CDS | 55.0% | |
| GTCGTTGTAGGAACCTGCAG+GGG | - | chr1.3:43309695-43309714 | None:intergenic | 55.0% | |
| TCATTGGAGCCTGCATCCTG+TGG | - | chr1.3:43307067-43307086 | None:intergenic | 55.0% | |
| TGCTCTTCTCCACAGGATGC+AGG | + | chr1.3:43307055-43307074 | MS.gene81766:CDS | 55.0% | |
| TGTCCAACCTGCCTTTGCAC+TGG | + | chr1.3:43309851-43309870 | MS.gene81766:CDS | 55.0% | |
| !! | CAGGTTACTTGGCTTGCGCT+CGG | + | chr1.3:43309606-43309625 | MS.gene81766:intron | 55.0% |
| !! | TGGCGGGCTTATTGCACCAA+CGG | + | chr1.3:43308204-43308223 | MS.gene81766:CDS | 55.0% |
| !!! | TCCTTTTCGGGTGGAGCAGT+TGG | + | chr1.3:43309390-43309409 | MS.gene81766:CDS | 55.0% |
| AGCCGTAGGAGTCGAACCCT+GGG | + | chr1.3:43308852-43308871 | MS.gene81766:intron | 60.0% | |
| GCCAACTGCTCCACCCGAAA+AGG | - | chr1.3:43309394-43309413 | None:intergenic | 60.0% | |
| GGAGATTGCGTGTGCAGCAG+CGG | + | chr1.3:43307712-43307731 | MS.gene81766:CDS | 60.0% | |
| GTCCCAGGGTTCGACTCCTA+CGG | - | chr1.3:43308857-43308876 | None:intergenic | 60.0% | |
| TGAAGGGCCAGAGACGGTTC+AGG | + | chr1.3:43307207-43307226 | MS.gene81766:CDS | 60.0% | |
| !! | TGCGCTCGGTGTTCCACAAG+TGG | + | chr1.3:43309620-43309639 | MS.gene81766:CDS | 60.0% |
| GAGCCGTAGGAGTCGAACCC+TGG | + | chr1.3:43308851-43308870 | MS.gene81766:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 43306926 | 43309922 | 43306926 | ID=MS.gene81766 |
| chr1.3 | mRNA | 43306926 | 43309922 | 43306926 | ID=MS.gene81766.t1;Parent=MS.gene81766 |
| chr1.3 | exon | 43306926 | 43307098 | 43306926 | ID=MS.gene81766.t1.exon1;Parent=MS.gene81766.t1 |
| chr1.3 | CDS | 43306926 | 43307098 | 43306926 | ID=cds.MS.gene81766.t1;Parent=MS.gene81766.t1 |
| chr1.3 | exon | 43307192 | 43307309 | 43307192 | ID=MS.gene81766.t1.exon2;Parent=MS.gene81766.t1 |
| chr1.3 | CDS | 43307192 | 43307309 | 43307192 | ID=cds.MS.gene81766.t1;Parent=MS.gene81766.t1 |
| chr1.3 | exon | 43307708 | 43307830 | 43307708 | ID=MS.gene81766.t1.exon3;Parent=MS.gene81766.t1 |
| chr1.3 | CDS | 43307708 | 43307830 | 43307708 | ID=cds.MS.gene81766.t1;Parent=MS.gene81766.t1 |
| chr1.3 | exon | 43308139 | 43308225 | 43308139 | ID=MS.gene81766.t1.exon4;Parent=MS.gene81766.t1 |
| chr1.3 | CDS | 43308139 | 43308225 | 43308139 | ID=cds.MS.gene81766.t1;Parent=MS.gene81766.t1 |
| chr1.3 | exon | 43309160 | 43309236 | 43309160 | ID=MS.gene81766.t1.exon5;Parent=MS.gene81766.t1 |
| chr1.3 | CDS | 43309160 | 43309236 | 43309160 | ID=cds.MS.gene81766.t1;Parent=MS.gene81766.t1 |
| chr1.3 | exon | 43309368 | 43309495 | 43309368 | ID=MS.gene81766.t1.exon6;Parent=MS.gene81766.t1 |
| chr1.3 | CDS | 43309368 | 43309495 | 43309368 | ID=cds.MS.gene81766.t1;Parent=MS.gene81766.t1 |
| chr1.3 | exon | 43309609 | 43309745 | 43309609 | ID=MS.gene81766.t1.exon7;Parent=MS.gene81766.t1 |
| chr1.3 | CDS | 43309609 | 43309745 | 43309609 | ID=cds.MS.gene81766.t1;Parent=MS.gene81766.t1 |
| chr1.3 | exon | 43309845 | 43309922 | 43309845 | ID=MS.gene81766.t1.exon8;Parent=MS.gene81766.t1 |
| chr1.3 | CDS | 43309845 | 43309922 | 43309845 | ID=cds.MS.gene81766.t1;Parent=MS.gene81766.t1 |
| Gene Sequence |
| Protein sequence |
