AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene82364


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene82364.t1 MTR_4g082950 96.840 981 29 1 1 979 1 981 0.0 1967
MS.gene82364.t1 MTR_0288s0040 75.057 878 187 8 67 941 44 892 0.0 1347
MS.gene82364.t1 MTR_3g462340 66.422 408 135 2 572 979 435 840 0.0 584
MS.gene82364.t1 MTR_3g462340 57.207 444 184 3 84 527 31 468 3.64e-174 529
MS.gene82364.t1 MTR_2g014460 51.741 402 185 5 579 979 595 988 2.97e-131 421
MS.gene82364.t1 MTR_2g014460 48.434 415 202 5 80 491 183 588 9.58e-121 393
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene82364.t1 AT3G29320 70.886 948 232 5 41 979 50 962 0.0 1396
MS.gene82364.t1 AT3G46970 65.931 408 137 2 572 979 436 841 0.0 586
MS.gene82364.t1 AT3G46970 54.393 478 207 5 52 527 1 469 9.05e-174 528

Find 228 sgRNAs with CRISPR-Local

Find 0 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGCTTTCTAATTGCTCTTC+TGG 0.206585 4.2:+26633417 None:intergenic
TTCTATGGAGAAGTTATTTC+AGG 0.216727 4.2:-26631003 MS.gene82364:CDS
GATCAGGAATGACGGTAAAT+TGG 0.232719 4.2:-26630372 MS.gene82364:CDS
CGACGAATTGATGGGATCTT+TGG 0.243497 4.2:-26626892 MS.gene82364:CDS
TTCTGTGTGTTTAGTACAGC+TGG 0.244339 4.2:-26627389 MS.gene82364:intron
GATTTGAAGGCTTTCAATAC+TGG 0.245062 4.2:-26630844 MS.gene82364:CDS
GTGATTCCCTTATCATAAAT+TGG 0.247012 4.2:-26632199 MS.gene82364:CDS
TCTTATCCAGTTAGATTCTA+TGG 0.254682 4.2:-26631018 MS.gene82364:CDS
ATTTGTACCACCACTTTATC+TGG 0.266367 4.2:+26630340 None:intergenic
AATTACCCTGCATGGGGATA+TGG 0.274456 4.2:-26631327 MS.gene82364:CDS
GCAAGCTTATTACATGTCTA+TGG 0.286957 4.2:-26632138 MS.gene82364:CDS
TTTAGAGGATGTGGCTAATC+AGG 0.301609 4.2:-26631933 MS.gene82364:intron
TGCATTCCAATTTATGATAA+GGG 0.315129 4.2:+26632193 None:intergenic
GGACCACAATCGCAAGTTTA+TGG 0.317000 4.2:+26630891 None:intergenic
GGTAACAGATCTTGAGAAAT+TGG 0.317053 4.2:-26629154 MS.gene82364:CDS
CGAACCATCATTGGCAGGTT+TGG 0.317570 4.2:+26629509 None:intergenic
TGCTGAGGCTCTGAGGAAAC+TGG 0.320911 4.2:-26631963 MS.gene82364:CDS
CATGAAGTTGTTTCTGAGTC+TGG 0.322339 4.2:-26629830 MS.gene82364:CDS
CCCATTCCAAATCAAACATT+TGG 0.324417 4.2:-26633489 MS.gene82364:CDS
ATGAATATGCCAGAGATATA+TGG 0.324624 4.2:-26626364 MS.gene82364:CDS
AACTAAAGAATTTGATTTGA+AGG 0.326464 4.2:-26630857 MS.gene82364:CDS
GACTGGAGGAGAAAGTATTT+TGG 0.328200 4.2:-26630959 MS.gene82364:CDS
CAGAAACGGATCCATCTTCT+AGG 0.345198 4.2:+26629228 None:intergenic
TCGCTGCCAAATGTTTGATT+TGG 0.348700 4.2:+26633483 None:intergenic
TTGCATTCCAATTTATGATA+AGG 0.352440 4.2:+26632192 None:intergenic
AGTTGCAAAGTAAGCCTTAC+TGG 0.354966 4.2:+26632235 None:intergenic
AGGGCATTGTTAAATGCAAT+TGG 0.355293 4.2:-26632010 MS.gene82364:CDS
AAGCTTGGGATATTACTAAA+AGG 0.359212 4.2:-26630240 MS.gene82364:intron
TCTGCATTCCTGAGCTGATT+AGG 0.359974 4.2:-26630297 MS.gene82364:CDS
TTCTTTAGTTGAAACTTTAG+TGG 0.365317 4.2:+26630870 None:intergenic
CAGTTCCGCTGCTTTGTCGC+TGG 0.365462 4.2:+26633378 None:intergenic
GTCTTCTGTTCCAATCCATT+TGG 0.366997 4.2:+26629179 None:intergenic
CAAGGACTTCCCTAGCTACT+TGG 0.367893 4.2:-26626826 MS.gene82364:CDS
CAGAGTGGATAGAATCAAAA+AGG 0.368398 4.2:-26628853 MS.gene82364:CDS
TTTCATGTTGCTTGTTCCAC+TGG 0.374129 4.2:+26627358 None:intergenic
CCTTCTATTGATTCATCCCC+AGG 0.374631 4.2:+26630472 None:intergenic
CCTTTACTTCTTCAAACCTT+GGG 0.375831 4.2:+26626952 None:intergenic
ATGAATGGATGTGTGCAAAT+TGG 0.376874 4.2:-26627329 MS.gene82364:CDS
ACTAGAGAATATTGAGTTGC+CGG 0.377955 4.2:-26629759 MS.gene82364:CDS
AGGAGGAAGTTGCTGAAAAC+TGG 0.381174 4.2:-26631254 MS.gene82364:CDS
GGCAGCGACAAAACAACATT+TGG 0.381599 4.2:-26633468 MS.gene82364:CDS
ACTTCTCCATAGAATCTAAC+TGG 0.381745 4.2:+26631012 None:intergenic
CTGAAGAAATTGCAGGGTTA+AGG 0.382529 4.2:-26627232 MS.gene82364:CDS
GAATATTGAGTTGCCGGATT+CGG 0.385197 4.2:-26629753 MS.gene82364:CDS
GAAACTGGGTTACAATTTAG+AGG 0.387483 4.2:-26631948 MS.gene82364:CDS
CCATTCCCAAGGGCTGCATC+TGG 0.392098 4.2:+26631399 None:intergenic
TGTTGATGATAATGATATAA+AGG 0.401976 4.2:-26629675 MS.gene82364:CDS
CATCAATTCGTCGTAGTTGT+AGG 0.404593 4.2:+26626902 None:intergenic
TTCTTGCTTTCTAGACTCCT+TGG 0.404594 4.2:-26631358 MS.gene82364:CDS
AAAACAATTGTTTGTTCCTC+GGG 0.409628 4.2:-26628042 MS.gene82364:CDS
AGATGCAATGTTTGATGTAC+AGG 0.409770 4.2:-26628771 MS.gene82364:intron
TTTATCTATACCTAATGTGC+TGG 0.410380 4.2:+26627484 None:intergenic
GAAAACAATTGTTTGTTCCT+CGG 0.412817 4.2:-26628043 MS.gene82364:CDS
CGTGCTGATTATTTCCTTGT+TGG 0.415896 4.2:-26626849 MS.gene82364:CDS
ATCAGGAATGACGGTAAATT+GGG 0.418725 4.2:-26630371 MS.gene82364:CDS
CTCCATTTCTCTAGTGCCTC+TGG 0.422856 4.2:+26630042 None:intergenic
TTCAAAAGATCTCCAATCTC+TGG 0.423187 4.2:+26627924 None:intergenic
GTGAATTGTCCCAGCACATT+AGG 0.424344 4.2:-26627494 MS.gene82364:intron
ACTTCTTCAAACCTTGGGTC+TGG 0.424710 4.2:+26626957 None:intergenic
CTCAATTCTCCATATATCTC+TGG 0.425589 4.2:+26626355 None:intergenic
GTCCATTGCTTAGCTCCATC+TGG 0.426769 4.2:+26630979 None:intergenic
TCAACATCAATTTCCTCAAC+AGG 0.426786 4.2:+26629692 None:intergenic
CTTCATGACAGCGTATGCTT+TGG 0.427119 4.2:+26630813 None:intergenic
GCCTTTACTTCTTCAAACCT+TGG 0.427852 4.2:+26626951 None:intergenic
CTACAACTACGACGAATTGA+TGG 0.429462 4.2:-26626901 MS.gene82364:CDS
ATAAACTCAACCACCGAATC+CGG 0.430194 4.2:+26629740 None:intergenic
TACCAGAGGCACTAGAGAAA+TGG 0.435864 4.2:-26630044 MS.gene82364:CDS
GTTGAAATAAGAGAAGAAGT+TGG 0.438273 4.2:-26627287 MS.gene82364:CDS
GTTAATCACGATCCAGAGAT+TGG 0.440645 4.2:-26627936 MS.gene82364:CDS
AAATTCCAGAATAAAACAAA+TGG 0.446135 4.2:-26629258 MS.gene82364:CDS
GTTTAAGCTGGGAGAAAGCT+TGG 0.447465 4.2:-26630255 MS.gene82364:CDS
GCTCAGGAATGCAGAGTGTT+GGG 0.447491 4.2:+26630305 None:intergenic
CCAAATGTTTGATTTGGAAT+GGG 0.448607 4.2:+26633489 None:intergenic
ATTTGAAGGCTTTCAATACT+GGG 0.449329 4.2:-26630843 MS.gene82364:CDS
GCACGAGCTGAAGAAATTGC+AGG 0.449587 4.2:-26627239 MS.gene82364:CDS
ATGGAGTTTGACTCTTCTGC+AGG 0.451498 4.2:-26630025 MS.gene82364:CDS
TCACAGTGAGATTGTAAAAG+AGG 0.453012 4.2:-26629432 MS.gene82364:CDS
AATTCCAGAATAAAACAAAT+GGG 0.455147 4.2:-26629257 MS.gene82364:CDS
AACATGAAATTTGCAATGAA+TGG 0.455487 4.2:-26627344 MS.gene82364:CDS
TAGATGTGAAGGGTTTAAGC+TGG 0.457167 4.2:-26630267 MS.gene82364:CDS
ACGTATAACGAAGGACGGTC+AGG 0.458652 4.2:-26631274 MS.gene82364:CDS
GCCCTTGGGAATGGAGGATT+AGG 0.460169 4.2:-26631390 MS.gene82364:CDS
GCAACACTAACATTGTAATC+AGG 0.461165 4.2:+26627537 None:intergenic
ATCGTTTCTCTGAATTTCCC+AGG 0.466281 4.2:+26631044 None:intergenic
TTCCTCAGAGCCTCAGCATA+AGG 0.466595 4.2:+26631968 None:intergenic
ATGCCTTGTCAACTTCCTCT+TGG 0.467018 4.2:+26626799 None:intergenic
CTACCAGTTTGCAGATAATG+AGG 0.467112 4.2:-26628885 MS.gene82364:intron
TCATTTATCAAAGAGAAAAC+AGG 0.468618 4.2:-26628809 MS.gene82364:CDS
CAGGAGCCAGATGCAGCCCT+TGG 0.468994 4.2:-26631405 MS.gene82364:CDS
CCAGATGCAGCCCTTGGGAA+TGG 0.470381 4.2:-26631399 MS.gene82364:CDS
TGTACATCAAACATTGCATC+TGG 0.471752 4.2:+26628773 None:intergenic
GCCAAATGTTTGATTTGGAA+TGG 0.475175 4.2:+26633488 None:intergenic
TTAGCCATGCGAACCATCAT+TGG 0.477716 4.2:+26629500 None:intergenic
TTACTGGGCTCAAATTTCTC+AGG 0.477856 4.2:+26632251 None:intergenic
CCTGGGGATGAATCAATAGA+AGG 0.480958 4.2:-26630472 MS.gene82364:CDS
GCACGCTTTGAAAAGAGATC+AGG 0.482626 4.2:-26630388 MS.gene82364:CDS
ATTAATATCCTAATCAGCTC+AGG 0.483954 4.2:+26630289 None:intergenic
GTTGCTGAAATGCTAATTCC+TGG 0.484765 4.2:-26627519 MS.gene82364:CDS
TGATTATTTCCTTGTTGGCA+AGG 0.485154 4.2:-26626844 MS.gene82364:CDS
GCTTATGATGTTCCAATACC+TGG 0.487169 4.2:-26630931 MS.gene82364:CDS
GGGCATTGTTAAATGCAATT+GGG 0.488583 4.2:-26632009 MS.gene82364:CDS
GGGTTACAATTTAGAGGATG+TGG 0.490297 4.2:-26631942 MS.gene82364:CDS
ATTGGGAATTTACAACTCTC+AGG 0.491640 4.2:-26631992 MS.gene82364:CDS
TGAGAAATTTGAGCCCAGTA+AGG 0.492541 4.2:-26632249 MS.gene82364:CDS
AGCTCAGGAATGCAGAGTGT+TGG 0.492601 4.2:+26630304 None:intergenic
AAAATAATAACCAAATGGAT+TGG 0.492703 4.2:-26629189 MS.gene82364:CDS
CCATGCGAACCATCATTGGC+AGG 0.495713 4.2:+26629504 None:intergenic
GTAAAATTCATCACAGATGT+AGG 0.497209 4.2:-26627966 MS.gene82364:CDS
CATGTCTATGGAGTATCTAC+AGG 0.498390 4.2:-26632126 MS.gene82364:intron
TGATCCAAACCTGCCAATGA+TGG 0.501005 4.2:-26629513 MS.gene82364:CDS
ACGGCAGTTACTGAATATCA+TGG 0.501069 4.2:-26628114 MS.gene82364:CDS
TGCTGGGACAATTCACTGCC+AGG 0.501865 4.2:+26627501 None:intergenic
CCCAAGGTTTGAAGAAGTAA+AGG 0.502177 4.2:-26626952 MS.gene82364:CDS
GAAAGAAAGAGCAGAAGGAA+AGG 0.502282 4.2:-26627210 MS.gene82364:intron
TCTGTTACATTCTATACCCT+GGG 0.504284 4.2:-26630489 MS.gene82364:CDS
GAACTGAAAGAACGACTCAT+TGG 0.504413 4.2:-26633361 MS.gene82364:CDS
ATGGCTAACCTATGTGTTGT+TGG 0.505350 4.2:-26629485 MS.gene82364:CDS
TCTTGGCACTCCAAGTAGCT+AGG 0.505786 4.2:+26626816 None:intergenic
TTTAAGCTGGGAGAAAGCTT+GGG 0.507352 4.2:-26630254 MS.gene82364:CDS
GGGGATATGGACTTAGATAC+AGG 0.507764 4.2:-26631314 MS.gene82364:CDS
TAGGATATTAATAGATGTGA+AGG 0.509727 4.2:-26630278 MS.gene82364:CDS
ATGTCAATCTTGAACACAGC+TGG 0.511229 4.2:-26626419 MS.gene82364:CDS
CAAAGCGTGCAATGATATCC+TGG 0.512626 4.2:+26630401 None:intergenic
TGCAAATTGGAACTCTCGAT+GGG 0.513093 4.2:-26627316 MS.gene82364:CDS
TTAGTAAAATAATAACCAAA+TGG 0.516483 4.2:-26629194 MS.gene82364:CDS
AACACTGAATTACCCTGCAT+GGG 0.518781 4.2:-26631334 MS.gene82364:CDS
ATTTATAGATGGGAAATCCC+TGG 0.520518 4.2:-26631062 MS.gene82364:intron
CGTATAAATTCAGCAGTGAC+CGG 0.523558 4.2:-26626394 MS.gene82364:CDS
TCTATGGAGAAGTTATTTCA+GGG 0.524340 4.2:-26631002 MS.gene82364:CDS
ATCTGTTACATTCTATACCC+TGG 0.525611 4.2:-26630490 MS.gene82364:CDS
CAACACTGAATTACCCTGCA+TGG 0.525876 4.2:-26631335 MS.gene82364:CDS
AATGGATTGGAACAGAAGAC+TGG 0.527079 4.2:-26629176 MS.gene82364:CDS
ATGAAGTTGTTTCTGAGTCT+GGG 0.528015 4.2:-26629829 MS.gene82364:CDS
TACCATTCTCAACAACCTGC+AGG 0.529812 4.2:-26633534 MS.gene82364:CDS
TACCACCACTTTATCTGGAA+GGG 0.530834 4.2:+26630345 None:intergenic
AGCGTATTCATGAATACAAA+CGG 0.531740 4.2:-26628133 MS.gene82364:CDS
TAAGGTCAGGATTACAGAAA+CGG 0.536410 4.2:+26629214 None:intergenic
AGGAGCCAGATGCAGCCCTT+GGG 0.536797 4.2:-26631404 MS.gene82364:CDS
TGTGTTTAGTACAGCTGGGA+TGG 0.537168 4.2:-26627384 MS.gene82364:intron
TATTGAGTTGCCGGATTCGG+TGG 0.537392 4.2:-26629750 MS.gene82364:CDS
GCTAACCTATGTGTTGTTGG+TGG 0.537986 4.2:-26629482 MS.gene82364:CDS
TGGCATATTCATGAATAGTC+CGG 0.538204 4.2:+26626375 None:intergenic
CCACCATAAACTTGCGATTG+TGG 0.538883 4.2:-26630894 MS.gene82364:CDS
GAATTGATGGGATCTTTGGA+AGG 0.539315 4.2:-26626888 MS.gene82364:CDS
CTAAGTCCATATCCCCATGC+AGG 0.541539 4.2:+26631321 None:intergenic
GGATCTTTGGAAGGGAATGA+AGG 0.543201 4.2:-26626879 MS.gene82364:CDS
GGCCTAATCCTCCATTCCCA+AGG 0.543436 4.2:+26631388 None:intergenic
TGCCTGCAGGTTGTTGAGAA+TGG 0.544681 4.2:+26633532 None:intergenic
TTAAGGAAAGAAAGAGCAGA+AGG 0.545172 4.2:-26627215 MS.gene82364:CDS
CTTCTATTGATTCATCCCCA+GGG 0.545352 4.2:+26630473 None:intergenic
AATTTCCTCAACAGGATCAT+CGG 0.550548 4.2:+26629700 None:intergenic
AGATGTGAAGGGTTTAAGCT+GGG 0.551577 4.2:-26630266 MS.gene82364:CDS
TGCAGTTTGTACCAGACCCA+AGG 0.553369 4.2:-26626968 MS.gene82364:intron
GATGGAGCTAAGCAATGGAC+TGG 0.553513 4.2:-26630976 MS.gene82364:CDS
GAAGTTATTTCAGGGCCAGA+TGG 0.555318 4.2:-26630994 MS.gene82364:CDS
GTAAAGGCATATGTTAGAAG+TGG 0.555712 4.2:-26626936 MS.gene82364:CDS
ATTATGCTCAGCCTCTCTCC+AGG 0.555876 4.2:-26630419 MS.gene82364:CDS
CTTGGCACTCCAAGTAGCTA+GGG 0.557235 4.2:+26626817 None:intergenic
TTTATAGATGGGAAATCCCT+GGG 0.557702 4.2:-26631061 MS.gene82364:intron
ATGGGGTGACACCTAGAAGA+TGG 0.559245 4.2:-26629239 MS.gene82364:CDS
CCTGCCAATGATGGTTCGCA+TGG 0.561781 4.2:-26629504 MS.gene82364:CDS
GTACCACCACTTTATCTGGA+AGG 0.562027 4.2:+26630344 None:intergenic
TACAACTACGACGAATTGAT+GGG 0.563220 4.2:-26626900 MS.gene82364:CDS
GGACTCCCTTCCAGATAAAG+TGG 0.565184 4.2:-26630350 MS.gene82364:CDS
TTGGGAATGGAGGATTAGGC+CGG 0.569055 4.2:-26631386 MS.gene82364:CDS
TGCAACGAATTCATTTGAAG+TGG 0.569514 4.2:+26632334 None:intergenic
AATTTATGATAAGGGAATCA+CGG 0.571565 4.2:+26632201 None:intergenic
CTAGAAAGCAAGAAGCAAGC+CGG 0.574391 4.2:+26631367 None:intergenic
GATGCAGCCCTTGGGAATGG+AGG 0.575620 4.2:-26631396 MS.gene82364:CDS
CGGCAGTTACTGAATATCAT+GGG 0.576863 4.2:-26628113 MS.gene82364:CDS
GAAATTGGCTGTACTTCGCA+AGG 0.577155 4.2:-26629139 MS.gene82364:intron
TCTGTGTGTTTAGTACAGCT+GGG 0.577930 4.2:-26627388 MS.gene82364:intron
GGCCAGATGGAGCTAAGCAA+TGG 0.578954 4.2:-26630981 MS.gene82364:CDS
GTTGCAAAGTAAGCCTTACT+GGG 0.579338 4.2:+26632236 None:intergenic
TTGGAAGGGAATGAAGGCTA+TGG 0.582974 4.2:-26626873 MS.gene82364:CDS
TTTATTATTTCCACATGTCG+AGG 0.583310 4.2:+26629994 None:intergenic
CAACATATGTTCAAGCCAAG+AGG 0.583384 4.2:-26627992 MS.gene82364:CDS
TATGGACTTAGATACAGGTA+TGG 0.584953 4.2:-26631309 MS.gene82364:CDS
CGACGAAGAAGAAGATGTAG+TGG 0.585058 4.2:-26629609 MS.gene82364:CDS
AGGATATTAATAGATGTGAA+GGG 0.588908 4.2:-26630277 MS.gene82364:CDS
TAGGGAAGTCCTTGCCAACA+AGG 0.589757 4.2:+26626835 None:intergenic
GCTGAGGCTCTGAGGAAACT+GGG 0.590579 4.2:-26631962 MS.gene82364:CDS
GGATTTACTTCCTCGACATG+TGG 0.591364 4.2:-26630004 MS.gene82364:CDS
GACGAAGAAGAAGATGTAGT+GGG 0.591470 4.2:-26629608 MS.gene82364:CDS
GTTTAGTACAGCTGGGATGG+AGG 0.592504 4.2:-26627381 MS.gene82364:intron
TCGTTTCTCTGAATTTCCCA+GGG 0.593399 4.2:+26631045 None:intergenic
TTATCTATACCTAATGTGCT+GGG 0.596409 4.2:+26627485 None:intergenic
CAACATATGAATATTATGAG+AGG 0.596709 4.2:-26632172 MS.gene82364:CDS
TCTTGCCGATGATCCTGTTG+AGG 0.596729 4.2:-26629705 MS.gene82364:CDS
GCCTAATCCTCCATTCCCAA+GGG 0.606925 4.2:+26631389 None:intergenic
AGGGTAATTCAGTGTTGCCA+AGG 0.609943 4.2:+26631341 None:intergenic
TAAGTCCATATCCCCATGCA+GGG 0.610745 4.2:+26631322 None:intergenic
AATTGATGGGATCTTTGGAA+GGG 0.613386 4.2:-26626887 MS.gene82364:CDS
GTCCTTATGCTGAGGCTCTG+AGG 0.613621 4.2:-26631970 MS.gene82364:CDS
TGAAAAGAGATCAGGAATGA+CGG 0.617393 4.2:-26630380 MS.gene82364:CDS
TATAACGAAGGACGGTCAGG+AGG 0.619104 4.2:-26631271 MS.gene82364:CDS
TGTCATGAAGAATGCAGAGA+AGG 0.620102 4.2:-26630800 MS.gene82364:intron
AGGTGAGCTTGAATGCCTGC+AGG 0.620576 4.2:+26633519 None:intergenic
CACGAGCTGAAGAAATTGCA+GGG 0.620721 4.2:-26627238 MS.gene82364:CDS
AACATATGAATATTATGAGA+GGG 0.623422 4.2:-26632171 MS.gene82364:CDS
GATTTGGAATGGGAATGTAA+AGG 0.624865 4.2:+26633499 None:intergenic
AATGAAAGAATTGAGTGCTG+AGG 0.627614 4.2:-26628069 MS.gene82364:CDS
GGAGCTAAGCAATGGACTGG+AGG 0.628655 4.2:-26630973 MS.gene82364:CDS
TGCAATGATATCCTGGAGAG+AGG 0.629144 4.2:+26630408 None:intergenic
ATTCAAACAACGTATAACGA+AGG 0.632464 4.2:-26631283 MS.gene82364:CDS
ACAGCTGGGATGGAGGCCAG+TGG 0.632889 4.2:-26627374 MS.gene82364:CDS
GTGCAAATTGGAACTCTCGA+TGG 0.634864 4.2:-26627317 MS.gene82364:CDS
GTGCCAAGAGGAAGTTGACA+AGG 0.636085 4.2:-26626802 MS.gene82364:CDS
TTTGAAGGCTTTCAATACTG+GGG 0.639183 4.2:-26630842 MS.gene82364:CDS
CCACAATCGCAAGTTTATGG+TGG 0.645345 4.2:+26630894 None:intergenic
ATGGATTGGAACAGAAGACT+GGG 0.645354 4.2:-26629175 MS.gene82364:CDS
TATTGGAACATCATAAGCAA+CGG 0.649331 4.2:+26630936 None:intergenic
ACTCTCAGGTCCTTATGCTG+AGG 0.656696 4.2:-26631978 MS.gene82364:CDS
ATTCCAGAATAAAACAAATG+GGG 0.658074 4.2:-26629256 MS.gene82364:CDS
AAACAACGTATAACGAAGGA+CGG 0.658557 4.2:-26631279 MS.gene82364:CDS
TGTTGCCAGCGACAAAGCAG+CGG 0.667849 4.2:-26633383 MS.gene82364:CDS
CAACAAGGAAATAATCAGCA+CGG 0.670194 4.2:+26626850 None:intergenic
TAGCTACTTGGAGTGCCAAG+AGG 0.674127 4.2:-26626814 MS.gene82364:CDS
GTGCCTCTGGTAGAACTGTG+TGG 0.675525 4.2:+26630055 None:intergenic
ATGAGGATCTGCAATCAGAG+TGG 0.676696 4.2:-26628868 MS.gene82364:CDS
ACACTGAATTACCCTGCATG+GGG 0.680238 4.2:-26631333 MS.gene82364:CDS
CTCCCTTCCAGATAAAGTGG+TGG 0.681896 4.2:-26630347 MS.gene82364:CDS
AGTTGCTGAAAACTGGCTTG+AGG 0.695370 4.2:-26631247 MS.gene82364:intron
AAAGAACGACTCATTGGACA+AGG 0.698404 4.2:-26633355 MS.gene82364:intron
AAACCACACAGTTCTACCAG+AGG 0.720864 4.2:-26630058 MS.gene82364:CDS
CTGTTACATTCTATACCCTG+GGG 0.720986 4.2:-26630488 MS.gene82364:CDS
ACGAAGAAGAAGATGTAGTG+GGG 0.722856 4.2:-26629607 MS.gene82364:CDS
GCAAATTGGAACTCTCGATG+GGG 0.738537 4.2:-26627315 MS.gene82364:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content


Chromosome Type Strat End Strand Name
chr4.2 gene 26626337 26633566 26626337 ID=MS.gene82364
chr4.2 mRNA 26626337 26633566 26626337 ID=MS.gene82364.t1;Parent=MS.gene82364
chr4.2 exon 26633356 26633566 26633356 ID=MS.gene82364.t1.exon1;Parent=MS.gene82364.t1
chr4.2 CDS 26633356 26633566 26633356 ID=cds.MS.gene82364.t1;Parent=MS.gene82364.t1
chr4.2 exon 26632127 26632359 26632127 ID=MS.gene82364.t1.exon2;Parent=MS.gene82364.t1
chr4.2 CDS 26632127 26632359 26632127 ID=cds.MS.gene82364.t1;Parent=MS.gene82364.t1
chr4.2 exon 26631934 26632035 26631934 ID=MS.gene82364.t1.exon3;Parent=MS.gene82364.t1
chr4.2 CDS 26631934 26632035 26631934 ID=cds.MS.gene82364.t1;Parent=MS.gene82364.t1
chr4.2 exon 26631248 26631424 26631248 ID=MS.gene82364.t1.exon4;Parent=MS.gene82364.t1
chr4.2 CDS 26631248 26631424 26631248 ID=cds.MS.gene82364.t1;Parent=MS.gene82364.t1
chr4.2 exon 26630801 26631076 26630801 ID=MS.gene82364.t1.exon5;Parent=MS.gene82364.t1
chr4.2 CDS 26630801 26631076 26630801 ID=cds.MS.gene82364.t1;Parent=MS.gene82364.t1
chr4.2 exon 26630241 26630512 26630241 ID=MS.gene82364.t1.exon6;Parent=MS.gene82364.t1
chr4.2 CDS 26630241 26630512 26630241 ID=cds.MS.gene82364.t1;Parent=MS.gene82364.t1
chr4.2 exon 26629978 26630095 26629978 ID=MS.gene82364.t1.exon7;Parent=MS.gene82364.t1
chr4.2 CDS 26629978 26630095 26629978 ID=cds.MS.gene82364.t1;Parent=MS.gene82364.t1
chr4.2 exon 26629409 26629858 26629409 ID=MS.gene82364.t1.exon8;Parent=MS.gene82364.t1
chr4.2 CDS 26629409 26629858 26629409 ID=cds.MS.gene82364.t1;Parent=MS.gene82364.t1
chr4.2 exon 26629140 26629292 26629140 ID=MS.gene82364.t1.exon9;Parent=MS.gene82364.t1
chr4.2 CDS 26629140 26629292 26629140 ID=cds.MS.gene82364.t1;Parent=MS.gene82364.t1
chr4.2 exon 26628772 26628900 26628772 ID=MS.gene82364.t1.exon10;Parent=MS.gene82364.t1
chr4.2 CDS 26628772 26628900 26628772 ID=cds.MS.gene82364.t1;Parent=MS.gene82364.t1
chr4.2 exon 26627923 26628159 26627923 ID=MS.gene82364.t1.exon11;Parent=MS.gene82364.t1
chr4.2 CDS 26627923 26628159 26627923 ID=cds.MS.gene82364.t1;Parent=MS.gene82364.t1
chr4.2 exon 26627495 26627571 26627495 ID=MS.gene82364.t1.exon12;Parent=MS.gene82364.t1
chr4.2 CDS 26627495 26627571 26627495 ID=cds.MS.gene82364.t1;Parent=MS.gene82364.t1
chr4.2 exon 26627211 26627397 26627211 ID=MS.gene82364.t1.exon13;Parent=MS.gene82364.t1
chr4.2 CDS 26627211 26627397 26627211 ID=cds.MS.gene82364.t1;Parent=MS.gene82364.t1
chr4.2 exon 26626785 26626985 26626785 ID=MS.gene82364.t1.exon14;Parent=MS.gene82364.t1
chr4.2 CDS 26626785 26626985 26626785 ID=cds.MS.gene82364.t1;Parent=MS.gene82364.t1
chr4.2 exon 26626337 26626453 26626337 ID=MS.gene82364.t1.exon15;Parent=MS.gene82364.t1
chr4.2 CDS 26626337 26626453 26626337 ID=cds.MS.gene82364.t1;Parent=MS.gene82364.t1
Gene Sequence

>MS.gene82364

ATGTCTGCTCTACCATTCTCAACAACCTGCAGGCATTCAAGCTCACCTTTACATTCCCATTCCAAATCAAACATTTGGCAGCGACAAAACAACATTTGGCATTTGTTTGTCATCACAAAGTCAAATTCCAGAAGAGCAATTAGAAAGCTCTATGTGAAGAATGTTGCCAGCGACAAAGCAGCGGAACTGAAAGAACGACTCATTGGACAAGGTTGCTTGCTGGCATTTTCTCTTGTTTTGTGATTCTTTCTTCACTCCACTTCTTTACATTCTAATATATTATTCAGGATATTCATGTTTATAATTTAAATAGTTATATTTTTTTCAGTGAGCCTTGCAAGAGTTTCAGTTTGATGGAAATTTTGCTGGGTTTAATTGGTTACTAGTGCATTTTTTGGAAGGTTCTCAAAAGTAAGGAGTGGGAACCATGGTTTTATGTTAGATTTATATTGAGATAAACTGTCAATGCACATTATAGACGTTGGCTGATTTAGATAGTAGCTTTCTTAAGGTGTGCAGTATAGGCATCGTAACTTATATTGCCACAGGAAGGATGTCACTTAATATCTTTCCATGTAAATTTGGATTAATGGAATCTAGTTGAGGAAATAAAGATTAGTGATTATGGATCATCTCTTGTTTATTAAATCTGAGCTAATATGGCTTATCTATTTATCCCTTTGAAGTTTGTTGGAGGAAATGTAATAACTAAATACGGGAATGTAAAATACATTTCTCCATATTTTTAAAGTTTCAATGTCATAAACATTATATTTTAATGAATTTCGTTTGAAGGTGATGAATCATGATATTAATCTGACTGTTCTAGACTAGTTCGTAGTTGCTAGTTAGTATTGACTATTGAGTTACTCTTTCCCCTAAGACTTGCCTTTATATAAATCAAGTTTCCTTGAATCGTAATGGAACTAATGACAAAACCTCGTAATAGATTGACAATTTTGATTTATTTATTTATTTATTTATTCAGTTAGCAAAAGTAGAAACACATTTAAGCAATATCATAGCTAATACAACAGTGTTCTCTTGAAGTTATAAGGATATTCTAGATTTTTTTTCTTCATATATATATTTTTATATCGAACTCTAAAATCCAAGATTTTTTAGTATTATATCTTACAATAATGTTTTTTTTTTCTTCTGCAAATATGGTCCTAAATATTAATTCCTTATTGGTTAACACTTGCAGGCACCACTTCAAATGAATTCGTTGCAGATTCTGCATCTGTAGCTTCAAGCATAAAATATCATGCTGAGTTCACCACATCTTTTTCTCCTGAGAAATTTGAGCCCAGTAAGGCTTACTTTGCAACTGCAGAGAGTGTCCGTGATTCCCTTATCATAAATTGGAATGCAACATATGAATATTATGAGAGGGTTAATGTTAAGCAAGCTTATTACATGTCTATGGAGTATCTACAGGTTCATATTGGGTTTCCTTTATGAAACACGGGTCATTTTCTTTGCAAATGATTATTAATTTTCATTCCTACATTTTTTCCCAATTGTGAAGGGTAGGGCATTGTTAAATGCAATTGGGAATTTACAACTCTCAGGTCCTTATGCTGAGGCTCTGAGGAAACTGGGTTACAATTTAGAGGATGTGGCTAATCAGGTTTTTTCCTACTATTGTTCTCCTTTGTTGTTGCGGTTTCGGCTTCTGTTAGAAACTTTTACTCTTGTTACAATTTCTGTTTATCAAATAGTCCTCCTGGTAGCATGTAACAATAAGTTGAACTGGACTAATCCCTTTCTGTCCATTTCACAAAATTGTTATCTGTCATCTTGAGGATGCCAAATATTATAGTACAATGTATCTCTTATAGGCTTTCTATTGACAACAAAGATTAGGTCCATATTTGAACCAAGATTGTTACATGTTTGTTTAATGGAAAAAAGTGAGAATATTGTTAGGAAACAAGCAAGCATTCCTTCAAAAAAAAAAAAAAAGCAAGCATGTTTAAGAGTAAAATGTCTTCATTCGTGTGGAAACATACTAATGAAGGACCAAGAAAAACTACAAGAAAAACACAAACAGTTCACGAATGAAATGATAGTAATATGGATAGATTGCAAAGAATTAATCTGAGCATATTTAAAAGCAAACTCACATACAATTCACAGGAGCCAGATGCAGCCCTTGGGAATGGAGGATTAGGCCGGCTTGCTTCTTGCTTTCTAGACTCCTTGGCAACACTGAATTACCCTGCATGGGGATATGGACTTAGATACAGGTATGGTTTATTCAAACAACGTATAACGAAGGACGGTCAGGAGGAAGTTGCTGAAAACTGGCTTGAGGTACTGCTTATATGGATATTCGATAATTATCAATTGTAAGCCAATTTTCATATTATTGCTGCCTATGCAGGCGTGCTTGTTCTTTTAATTGTTCTTTCTTCTATCACTCTTTTTGGAAGCTCTGTAAGTTCTTCTGCAGAGATATTAACTGACTGACGTGTCTATTTATAGATGGGAAATCCCTGGGAAATTCAGAGAAACGATGTCTCTTATCCAGTTAGATTCTATGGAGAAGTTATTTCAGGGCCAGATGGAGCTAAGCAATGGACTGGAGGAGAAAGTATTTTGGCCGTTGCTTATGATGTTCCAATACCTGGATACAAAACTAGAACCACCATAAACTTGCGATTGTGGTCCACTAAAGTTTCAACTAAAGAATTTGATTTGAAGGCTTTCAATACTGGGGATCATGCCAAAGCATACGCTGTCATGAAGAATGCAGAGAAGGTTTGTGGAAGCCTTGTTTCTTTGTGGTCCTTACACCTGCATCTAAGTTCAGTGTCTTCTTCAAAAGTACTTTCTGGAAGATTCAAAATATCCACTACTGAGCTTAGAATGTATTGCATGAATATGACGAAAACCTTATTCTCTTGCTTCAAATTGTAGTGGTACCTATATCTCAGATATAAATCATCGGAGAAGTTTTTTTTCATTTATGGAAAGTAAATTCAGTTTACTGTTTTCATGAATCATTTGTGATGCAAATTTATTTCTTTTAATATTTGTTGTAATCAGATCTGTTACATTCTATACCCTGGGGATGAATCAATAGAAGGCAAGACTTTACGACTAAAGCAACAATATACATTATGCTCAGCCTCTCTCCAGGATATCATTGCACGCTTTGAAAAGAGATCAGGAATGACGGTAAATTGGGACTCCCTTCCAGATAAAGTGGTGGTACAAATGAATGATACTCACCCAACACTCTGCATTCCTGAGCTGATTAGGATATTAATAGATGTGAAGGGTTTAAGCTGGGAGAAAGCTTGGGATATTACTAAAAGGTGTTTCTTTTTGCATTAACTCTATATCCAATTTATATTTAAAAGATATCAAGCCATTATTAGAGCTACTCTAATAACAACGTTTTAACTACTGCTTTGATCTTTACACTTAGTTTGATCTCTCTTTTAATGGCTCTTCTGTTAGAACGGTTGCTTACACAAACCACACAGTTCTACCAGAGGCACTAGAGAAATGGAGTTTGACTCTTCTGCAGGATTTACTTCCTCGACATGTGGAAATAATAAAAAAGATAGATGAGGAGGTAAGGTTGTAATGTTTATTTGGCTTTAATGTTAAAATTATTCTTATTTCATATGTCCATCTACACGGTCTTCTTTATGAACTTTATATAATGTTTTGTATCTTTGTTTTGTTAACCAGTTTACACATGAAGTTGTTTCTGAGTCTGGGACAAATGATCTTAACATGCTGCAAGAAAAGCTCAGAAAGATGAGAATACTAGAGAATATTGAGTTGCCGGATTCGGTGGTTGAGTTTATTAATAATAAAGTTCTTGCCGATGATCCTGTTGAGGAAATTGATGTTGATGATAATGATATAAAGGCAACAGAAAAGAAAGATAATGAAGAACAAAATGATGATGACGACGACGAAGAAGAAGATGTAGTGGGGAAAGACGAACAAGAAGCAGATGATGATGAAGAGCTTGTTGTAGAGAACAAAAAAGAATGGAAATTCGAAGTTGATCCAAACCTGCCAATGATGGTTCGCATGGCTAACCTATGTGTTGTTGGTGGTTTTTCTGTGAACGGGGTAGCTGAGATTCACAGTGAGATTGTAAAAGAGGAAGTTTTTCATGAATTTTACGAGGTATCAAAATCAGCAGATTCTTTTTACGTTAATATGAACAATTTTTATTGCAATTACTGGTATATACATCCATCAAATGTGATATTCATTAATTTTCTCTGTCATTGATTTGACAGTTCTGGCCTGAGAAATTCCAGAATAAAACAAATGGGGTGACACCTAGAAGATGGATCCGTTTCTGTAATCCTGACCTTAGTAAAATAATAACCAAATGGATTGGAACAGAAGACTGGGTAACAGATCTTGAGAAATTGGCTGTACTTCGCAAGGTAAATGAATTTAACTGAGCATTCTGAATGATATTTGAATTAAATAATTTATATGCAACAACTTCCACAGTTGGCTAGTGAGTACATATGCATGATTAGTCACATTATAATGTCAAAATGGCAGCAAGCATTATAGGCGACTCCTTAGTTGAATGTCACTTCACAATTTTTTTTGCACAAAATCTATGTGTTCTTTTGTTCCTTTATATTTTTCCTTTATAGATACATTTTTCTACCAGTTTGCAGATAATGAGGATCTGCAATCAGAGTGGATAGAATCAAAAAGGAGAAACAAGATTAACGTTGCATCATTTATCAAAGAGAAAACAGGTTATGTTGTCAGTCCAGATGCAATGTTTGATGTACAGGTTAGGTTTCTGCCATCAAGAACTACATTTCCTTCTTCTCGTGTTTAGTTAGCATCTGAATAATAGCAGTGCTGGAAATGTTTCATGTCTGGAGTGTTTATTTTCACCTTTTCAAGGAATGAACATTTGTTCTTTGGTTCTTGCTCCTAAAACAACTTACGCATACATAACTCATAAAAAAGTTCATTTTTTTATAGTTAAATAGATTTAGAATCCTGTGTAAAACTTACACAATGAGGATCAGCATCATCCATCTCTAATGTTATAGAAATCCTTGTAACATTATACGGTCTCACTATTTGCTGCATAGGAGAAGGGACAGTGCTCTGTATTATACTATTATTAGCTAAAAATTCCTATGCTGTAAAATAACATCACCCCTTTATGATGGATTCTTAAATACTATATGTTACAGTGTTGTCAAATATCGGCCATGACGGATTGCACATTTACTTATTGTGTAAAACCAAGATCCAATAAATAACAGCTGAATAGATAAAAGGCTAACATGAAATCGTACTTGGGAAAATGGGACAACCATTAAAATTCCAATGGCATGTTGTTTTACACCCTCAATTCATGGTTAATGATAAATGGCATATCTATTGTCAGGTCAAGCGTATTCATGAATACAAACGGCAGTTACTGAATATCATGGGAATTGTTTATCGCTACAAGAAAATGAAAGAATTGAGTGCTGAGGAAAGAAAACAATTGTTTGTTCCTCGGGTTTGTATTTTTGGAGGGAAAGCATTTGCAACATATGTTCAAGCCAAGAGGATTGTAAAATTCATCACAGATGTAGGAGCTACAGTTAATCACGATCCAGAGATTGGAGATCTTTTGAAGGTATCAGTCAAACTTGGGTGATAGATAAACACATTATGGTCGTTCCAAAAATTTGGTTGCTTACGCCTTTTGATGTTTAAATAACAATTTGTTTGCTTTATCTGAAGTAGAACTTTGGAAAATGTTTAATTCCAGGGACAAATCCCAGTAGTTAAATAAATGAATATCTCAACAAAAATGGACTGAAGTAATTGACAAATTTATGTTATTCTTCATACATAACAGCATGTGGCCTCAGCTGCAGAAAAATAAAATTATAGGATGTTAGCTGAAAGCTGATAAAGGGTGTTAAACTAGCATCTTTTTCTACTTAGTCATAAAACAGATCCTGGTTCTTGTCTTAACTTGCAGGTTATATTTGTTCCTGATTACAATGTTAGTGTTGCTGAAATGCTAATTCCTGGCAGTGAATTGTCCCAGCACATTAGGTATAGATAAATATATTTTTTAAAACAAATGCTTTACATTTTGTTTACAATCATTGTTATCAGTTTTTGTTTGACTTATCTTTTTCTGTGTGTTTAGTACAGCTGGGATGGAGGCCAGTGGAACAAGCAACATGAAATTTGCAATGAATGGATGTGTGCAAATTGGAACTCTCGATGGGGCTAATGTTGAAATAAGAGAAGAAGTTGGAGAAGACAACTTCTTTCTTTTTGGCGCACGAGCTGAAGAAATTGCAGGGTTAAGGAAAGAAAGAGCAGAAGGAAAGGTAAGTTCTTAAAATCAGAATACTTGGTTCAATGCAATAATTCCTTTTCCTTCTTGTTTTTCTTTCATACACTTTGCTTTTCATATCAGTGGCAATAACAATTGCTTAAACAAGCTCAAATAAAATGTGGCTTCTATAGATCCTTTAAGGCATTGTTAAGTCCAAGCCAACAGAATTATGTATCATAATCTCAATATAATGTGGTCTGTTGTATGATATATGCAGTTTGTACCAGACCCAAGGTTTGAAGAAGTAAAGGCATATGTTAGAAGTGGTGTTTTTGGCACCTACAACTACGACGAATTGATGGGATCTTTGGAAGGGAATGAAGGCTATGGCCGTGCTGATTATTTCCTTGTTGGCAAGGACTTCCCTAGCTACTTGGAGTGCCAAGAGGAAGTTGACAAGGCATACCGTGATCAAAAAGTAAGTAACATCAAGTCATGGACAAAACATGATATTTCGTCTATTACGTTCTTGTCGAATTCATTATGAAAATTAAAACTACAAGCTTTCCGCAATTCTTTTTGGATGAATTTCTCAGGCACATCATATTCATACCTGTGTTGAACACAAGTTGCCTCAACTGGTAATGAATGAAATTAGAAAATAGCAATCATTTCATACGTTTCTGAATTTTAATACATATTGTTTAATGCATAATGCATAGGTATTTATGCAAGTTATTATACGAACCATGGCATATGTATTGCTTATGTAGCGATCTAAAAGAACTGATTGATGTGTGTTGGTGCAGAAATGGACAAGAATGTCAATCTTGAACACAGCTGGTTCGTATAAATTCAGCAGTGACCGGACTATTCATGAATATGCCAGAGATATATGGAGAATTGAGCCAGTTGTATTGCCTTGA

Protein sequence

>MS.gene82364.t1

MSALPFSTTCRHSSSPLHSHSKSNIWQRQNNIWHLFVITKSNSRRAIRKLYVKNVASDKAAELKERLIGQGTTSNEFVADSASVASSIKYHAEFTTSFSPEKFEPSKAYFATAESVRDSLIINWNATYEYYERVNVKQAYYMSMEYLQGRALLNAIGNLQLSGPYAEALRKLGYNLEDVANQEPDAALGNGGLGRLASCFLDSLATLNYPAWGYGLRYRYGLFKQRITKDGQEEVAENWLEMGNPWEIQRNDVSYPVRFYGEVISGPDGAKQWTGGESILAVAYDVPIPGYKTRTTINLRLWSTKVSTKEFDLKAFNTGDHAKAYAVMKNAEKICYILYPGDESIEGKTLRLKQQYTLCSASLQDIIARFEKRSGMTVNWDSLPDKVVVQMNDTHPTLCIPELIRILIDVKGLSWEKAWDITKRTVAYTNHTVLPEALEKWSLTLLQDLLPRHVEIIKKIDEEFTHEVVSESGTNDLNMLQEKLRKMRILENIELPDSVVEFINNKVLADDPVEEIDVDDNDIKATEKKDNEEQNDDDDDEEEDVVGKDEQEADDDEELVVENKKEWKFEVDPNLPMMVRMANLCVVGGFSVNGVAEIHSEIVKEEVFHEFYEFWPEKFQNKTNGVTPRRWIRFCNPDLSKIITKWIGTEDWVTDLEKLAVLRKFADNEDLQSEWIESKRRNKINVASFIKEKTGYVVSPDAMFDVQVKRIHEYKRQLLNIMGIVYRYKKMKELSAEERKQLFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDPEIGDLLKVIFVPDYNVSVAEMLIPGSELSQHISTAGMEASGTSNMKFAMNGCVQIGTLDGANVEIREEVGEDNFFLFGARAEEIAGLRKERAEGKFVPDPRFEEVKAYVRSGVFGTYNYDELMGSLEGNEGYGRADYFLVGKDFPSYLECQEEVDKAYRDQKKWTRMSILNTAGSYKFSSDRTIHEYARDIWRIEPVVLP