Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene82364.t1 | XP_003607789.2 | 96.8 | 981 | 29 | 1 | 1 | 979 | 1 | 981 | 0.00E+00 | 1827.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene82364.t1 | P53535 | 79.1 | 916 | 188 | 1 | 64 | 979 | 62 | 974 | 0.0e+00 | 1430.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene82364.t1 | G7JHG9 | 96.8 | 981 | 29 | 1 | 1 | 979 | 1 | 981 | 0.0e+00 | 1827.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049195 | MS.gene82364 | 0.80698 | 6.32E-50 | -1.69E-46 |
MS.gene049297 | MS.gene82364 | 0.874204 | 8.11E-68 | -1.69E-46 |
MS.gene04933 | MS.gene82364 | 0.81922 | 1.30E-52 | -1.69E-46 |
MS.gene049758 | MS.gene82364 | 0.807731 | 4.38E-50 | -1.69E-46 |
MS.gene050226 | MS.gene82364 | 0.846196 | 2.53E-59 | -1.69E-46 |
MS.gene050227 | MS.gene82364 | 0.84462 | 6.76E-59 | -1.69E-46 |
MS.gene050228 | MS.gene82364 | 0.850522 | 1.61E-60 | -1.69E-46 |
MS.gene050330 | MS.gene82364 | -0.817891 | 2.61E-52 | -1.69E-46 |
MS.gene050558 | MS.gene82364 | 0.825907 | 3.63E-54 | -1.69E-46 |
MS.gene050623 | MS.gene82364 | -0.815892 | 7.32E-52 | -1.69E-46 |
MS.gene050642 | MS.gene82364 | 0.864118 | 1.53E-64 | -1.69E-46 |
MS.gene050787 | MS.gene82364 | 0.803437 | 3.49E-49 | -1.69E-46 |
MS.gene050820 | MS.gene82364 | 0.816461 | 5.47E-52 | -1.69E-46 |
MS.gene051240 | MS.gene82364 | 0.809814 | 1.57E-50 | -1.69E-46 |
MS.gene051662 | MS.gene82364 | 0.835581 | 1.54E-56 | -1.69E-46 |
MS.gene051663 | MS.gene82364 | 0.836336 | 9.93E-57 | -1.69E-46 |
MS.gene051860 | MS.gene82364 | 0.824622 | 7.31E-54 | -1.69E-46 |
MS.gene051983 | MS.gene82364 | 0.809452 | 1.88E-50 | -1.69E-46 |
MS.gene052011 | MS.gene82364 | -0.805876 | 1.08E-49 | -1.69E-46 |
MS.gene052176 | MS.gene82364 | 0.826649 | 2.42E-54 | -1.69E-46 |
MS.gene052376 | MS.gene82364 | 0.80233 | 5.91E-49 | -1.69E-46 |
MS.gene052600 | MS.gene82364 | 0.84934 | 3.44E-60 | -1.69E-46 |
MS.gene053836 | MS.gene82364 | 0.878999 | 1.78E-69 | -1.69E-46 |
MS.gene053907 | MS.gene82364 | 0.824459 | 7.98E-54 | -1.69E-46 |
MS.gene053971 | MS.gene82364 | 0.812948 | 3.28E-51 | -1.69E-46 |
MS.gene054473 | MS.gene82364 | 0.84694 | 1.58E-59 | -1.69E-46 |
MS.gene054942 | MS.gene82364 | 0.883385 | 4.69E-71 | -1.69E-46 |
MS.gene054983 | MS.gene82364 | 0.832061 | 1.17E-55 | -1.69E-46 |
MS.gene055358 | MS.gene82364 | 0.81811 | 2.33E-52 | -1.69E-46 |
MS.gene055422 | MS.gene82364 | 0.820587 | 6.34E-53 | -1.69E-46 |
MS.gene055428 | MS.gene82364 | 0.83544 | 1.68E-56 | -1.69E-46 |
MS.gene056451 | MS.gene82364 | 0.800635 | 1.31E-48 | -1.69E-46 |
MS.gene056612 | MS.gene82364 | 0.804361 | 2.24E-49 | -1.69E-46 |
MS.gene057121 | MS.gene82364 | 0.836208 | 1.07E-56 | -1.69E-46 |
MS.gene057245 | MS.gene82364 | 0.81505 | 1.13E-51 | -1.69E-46 |
MS.gene057439 | MS.gene82364 | 0.805189 | 1.50E-49 | -1.69E-46 |
MS.gene058002 | MS.gene82364 | 0.811747 | 6.00E-51 | -1.69E-46 |
MS.gene05811 | MS.gene82364 | 0.828212 | 1.02E-54 | -1.69E-46 |
MS.gene058142 | MS.gene82364 | 0.817498 | 3.20E-52 | -1.69E-46 |
MS.gene058710 | MS.gene82364 | 0.802217 | 6.23E-49 | -1.69E-46 |
MS.gene058749 | MS.gene82364 | 0.802516 | 5.41E-49 | -1.69E-46 |
MS.gene05907 | MS.gene82364 | 0.819358 | 1.21E-52 | -1.69E-46 |
MS.gene05984 | MS.gene82364 | 0.829114 | 6.17E-55 | -1.69E-46 |
MS.gene060476 | MS.gene82364 | 0.805379 | 1.37E-49 | -1.69E-46 |
MS.gene061040 | MS.gene82364 | -0.82385 | 1.11E-53 | -1.69E-46 |
MS.gene061049 | MS.gene82364 | 0.825468 | 4.61E-54 | -1.69E-46 |
MS.gene061114 | MS.gene82364 | -0.81159 | 6.49E-51 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene82364.t1 | MTR_4g082950 | 96.840 | 981 | 29 | 1 | 1 | 979 | 1 | 981 | 0.0 | 1967 |
MS.gene82364.t1 | MTR_0288s0040 | 75.057 | 878 | 187 | 8 | 67 | 941 | 44 | 892 | 0.0 | 1347 |
MS.gene82364.t1 | MTR_3g462340 | 66.422 | 408 | 135 | 2 | 572 | 979 | 435 | 840 | 0.0 | 584 |
MS.gene82364.t1 | MTR_3g462340 | 57.207 | 444 | 184 | 3 | 84 | 527 | 31 | 468 | 3.64e-174 | 529 |
MS.gene82364.t1 | MTR_2g014460 | 51.741 | 402 | 185 | 5 | 579 | 979 | 595 | 988 | 2.97e-131 | 421 |
MS.gene82364.t1 | MTR_2g014460 | 48.434 | 415 | 202 | 5 | 80 | 491 | 183 | 588 | 9.58e-121 | 393 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene82364.t1 | AT3G29320 | 70.886 | 948 | 232 | 5 | 41 | 979 | 50 | 962 | 0.0 | 1396 |
MS.gene82364.t1 | AT3G46970 | 65.931 | 408 | 137 | 2 | 572 | 979 | 436 | 841 | 0.0 | 586 |
MS.gene82364.t1 | AT3G46970 | 54.393 | 478 | 207 | 5 | 52 | 527 | 1 | 469 | 9.05e-174 | 528 |
Find 228 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GAGCTTTCTAATTGCTCTTC+TGG | 0.206585 | 4.2:+26633417 | None:intergenic |
TTCTATGGAGAAGTTATTTC+AGG | 0.216727 | 4.2:-26631003 | MS.gene82364:CDS |
GATCAGGAATGACGGTAAAT+TGG | 0.232719 | 4.2:-26630372 | MS.gene82364:CDS |
CGACGAATTGATGGGATCTT+TGG | 0.243497 | 4.2:-26626892 | MS.gene82364:CDS |
TTCTGTGTGTTTAGTACAGC+TGG | 0.244339 | 4.2:-26627389 | MS.gene82364:intron |
GATTTGAAGGCTTTCAATAC+TGG | 0.245062 | 4.2:-26630844 | MS.gene82364:CDS |
GTGATTCCCTTATCATAAAT+TGG | 0.247012 | 4.2:-26632199 | MS.gene82364:CDS |
TCTTATCCAGTTAGATTCTA+TGG | 0.254682 | 4.2:-26631018 | MS.gene82364:CDS |
ATTTGTACCACCACTTTATC+TGG | 0.266367 | 4.2:+26630340 | None:intergenic |
AATTACCCTGCATGGGGATA+TGG | 0.274456 | 4.2:-26631327 | MS.gene82364:CDS |
GCAAGCTTATTACATGTCTA+TGG | 0.286957 | 4.2:-26632138 | MS.gene82364:CDS |
TTTAGAGGATGTGGCTAATC+AGG | 0.301609 | 4.2:-26631933 | MS.gene82364:intron |
TGCATTCCAATTTATGATAA+GGG | 0.315129 | 4.2:+26632193 | None:intergenic |
GGACCACAATCGCAAGTTTA+TGG | 0.317000 | 4.2:+26630891 | None:intergenic |
GGTAACAGATCTTGAGAAAT+TGG | 0.317053 | 4.2:-26629154 | MS.gene82364:CDS |
CGAACCATCATTGGCAGGTT+TGG | 0.317570 | 4.2:+26629509 | None:intergenic |
TGCTGAGGCTCTGAGGAAAC+TGG | 0.320911 | 4.2:-26631963 | MS.gene82364:CDS |
CATGAAGTTGTTTCTGAGTC+TGG | 0.322339 | 4.2:-26629830 | MS.gene82364:CDS |
CCCATTCCAAATCAAACATT+TGG | 0.324417 | 4.2:-26633489 | MS.gene82364:CDS |
ATGAATATGCCAGAGATATA+TGG | 0.324624 | 4.2:-26626364 | MS.gene82364:CDS |
AACTAAAGAATTTGATTTGA+AGG | 0.326464 | 4.2:-26630857 | MS.gene82364:CDS |
GACTGGAGGAGAAAGTATTT+TGG | 0.328200 | 4.2:-26630959 | MS.gene82364:CDS |
CAGAAACGGATCCATCTTCT+AGG | 0.345198 | 4.2:+26629228 | None:intergenic |
TCGCTGCCAAATGTTTGATT+TGG | 0.348700 | 4.2:+26633483 | None:intergenic |
TTGCATTCCAATTTATGATA+AGG | 0.352440 | 4.2:+26632192 | None:intergenic |
AGTTGCAAAGTAAGCCTTAC+TGG | 0.354966 | 4.2:+26632235 | None:intergenic |
AGGGCATTGTTAAATGCAAT+TGG | 0.355293 | 4.2:-26632010 | MS.gene82364:CDS |
AAGCTTGGGATATTACTAAA+AGG | 0.359212 | 4.2:-26630240 | MS.gene82364:intron |
TCTGCATTCCTGAGCTGATT+AGG | 0.359974 | 4.2:-26630297 | MS.gene82364:CDS |
TTCTTTAGTTGAAACTTTAG+TGG | 0.365317 | 4.2:+26630870 | None:intergenic |
CAGTTCCGCTGCTTTGTCGC+TGG | 0.365462 | 4.2:+26633378 | None:intergenic |
GTCTTCTGTTCCAATCCATT+TGG | 0.366997 | 4.2:+26629179 | None:intergenic |
CAAGGACTTCCCTAGCTACT+TGG | 0.367893 | 4.2:-26626826 | MS.gene82364:CDS |
CAGAGTGGATAGAATCAAAA+AGG | 0.368398 | 4.2:-26628853 | MS.gene82364:CDS |
TTTCATGTTGCTTGTTCCAC+TGG | 0.374129 | 4.2:+26627358 | None:intergenic |
CCTTCTATTGATTCATCCCC+AGG | 0.374631 | 4.2:+26630472 | None:intergenic |
CCTTTACTTCTTCAAACCTT+GGG | 0.375831 | 4.2:+26626952 | None:intergenic |
ATGAATGGATGTGTGCAAAT+TGG | 0.376874 | 4.2:-26627329 | MS.gene82364:CDS |
ACTAGAGAATATTGAGTTGC+CGG | 0.377955 | 4.2:-26629759 | MS.gene82364:CDS |
AGGAGGAAGTTGCTGAAAAC+TGG | 0.381174 | 4.2:-26631254 | MS.gene82364:CDS |
GGCAGCGACAAAACAACATT+TGG | 0.381599 | 4.2:-26633468 | MS.gene82364:CDS |
ACTTCTCCATAGAATCTAAC+TGG | 0.381745 | 4.2:+26631012 | None:intergenic |
CTGAAGAAATTGCAGGGTTA+AGG | 0.382529 | 4.2:-26627232 | MS.gene82364:CDS |
GAATATTGAGTTGCCGGATT+CGG | 0.385197 | 4.2:-26629753 | MS.gene82364:CDS |
GAAACTGGGTTACAATTTAG+AGG | 0.387483 | 4.2:-26631948 | MS.gene82364:CDS |
CCATTCCCAAGGGCTGCATC+TGG | 0.392098 | 4.2:+26631399 | None:intergenic |
TGTTGATGATAATGATATAA+AGG | 0.401976 | 4.2:-26629675 | MS.gene82364:CDS |
CATCAATTCGTCGTAGTTGT+AGG | 0.404593 | 4.2:+26626902 | None:intergenic |
TTCTTGCTTTCTAGACTCCT+TGG | 0.404594 | 4.2:-26631358 | MS.gene82364:CDS |
AAAACAATTGTTTGTTCCTC+GGG | 0.409628 | 4.2:-26628042 | MS.gene82364:CDS |
AGATGCAATGTTTGATGTAC+AGG | 0.409770 | 4.2:-26628771 | MS.gene82364:intron |
TTTATCTATACCTAATGTGC+TGG | 0.410380 | 4.2:+26627484 | None:intergenic |
GAAAACAATTGTTTGTTCCT+CGG | 0.412817 | 4.2:-26628043 | MS.gene82364:CDS |
CGTGCTGATTATTTCCTTGT+TGG | 0.415896 | 4.2:-26626849 | MS.gene82364:CDS |
ATCAGGAATGACGGTAAATT+GGG | 0.418725 | 4.2:-26630371 | MS.gene82364:CDS |
CTCCATTTCTCTAGTGCCTC+TGG | 0.422856 | 4.2:+26630042 | None:intergenic |
TTCAAAAGATCTCCAATCTC+TGG | 0.423187 | 4.2:+26627924 | None:intergenic |
GTGAATTGTCCCAGCACATT+AGG | 0.424344 | 4.2:-26627494 | MS.gene82364:intron |
ACTTCTTCAAACCTTGGGTC+TGG | 0.424710 | 4.2:+26626957 | None:intergenic |
CTCAATTCTCCATATATCTC+TGG | 0.425589 | 4.2:+26626355 | None:intergenic |
GTCCATTGCTTAGCTCCATC+TGG | 0.426769 | 4.2:+26630979 | None:intergenic |
TCAACATCAATTTCCTCAAC+AGG | 0.426786 | 4.2:+26629692 | None:intergenic |
CTTCATGACAGCGTATGCTT+TGG | 0.427119 | 4.2:+26630813 | None:intergenic |
GCCTTTACTTCTTCAAACCT+TGG | 0.427852 | 4.2:+26626951 | None:intergenic |
CTACAACTACGACGAATTGA+TGG | 0.429462 | 4.2:-26626901 | MS.gene82364:CDS |
ATAAACTCAACCACCGAATC+CGG | 0.430194 | 4.2:+26629740 | None:intergenic |
TACCAGAGGCACTAGAGAAA+TGG | 0.435864 | 4.2:-26630044 | MS.gene82364:CDS |
GTTGAAATAAGAGAAGAAGT+TGG | 0.438273 | 4.2:-26627287 | MS.gene82364:CDS |
GTTAATCACGATCCAGAGAT+TGG | 0.440645 | 4.2:-26627936 | MS.gene82364:CDS |
AAATTCCAGAATAAAACAAA+TGG | 0.446135 | 4.2:-26629258 | MS.gene82364:CDS |
GTTTAAGCTGGGAGAAAGCT+TGG | 0.447465 | 4.2:-26630255 | MS.gene82364:CDS |
GCTCAGGAATGCAGAGTGTT+GGG | 0.447491 | 4.2:+26630305 | None:intergenic |
CCAAATGTTTGATTTGGAAT+GGG | 0.448607 | 4.2:+26633489 | None:intergenic |
ATTTGAAGGCTTTCAATACT+GGG | 0.449329 | 4.2:-26630843 | MS.gene82364:CDS |
GCACGAGCTGAAGAAATTGC+AGG | 0.449587 | 4.2:-26627239 | MS.gene82364:CDS |
ATGGAGTTTGACTCTTCTGC+AGG | 0.451498 | 4.2:-26630025 | MS.gene82364:CDS |
TCACAGTGAGATTGTAAAAG+AGG | 0.453012 | 4.2:-26629432 | MS.gene82364:CDS |
AATTCCAGAATAAAACAAAT+GGG | 0.455147 | 4.2:-26629257 | MS.gene82364:CDS |
AACATGAAATTTGCAATGAA+TGG | 0.455487 | 4.2:-26627344 | MS.gene82364:CDS |
TAGATGTGAAGGGTTTAAGC+TGG | 0.457167 | 4.2:-26630267 | MS.gene82364:CDS |
ACGTATAACGAAGGACGGTC+AGG | 0.458652 | 4.2:-26631274 | MS.gene82364:CDS |
GCCCTTGGGAATGGAGGATT+AGG | 0.460169 | 4.2:-26631390 | MS.gene82364:CDS |
GCAACACTAACATTGTAATC+AGG | 0.461165 | 4.2:+26627537 | None:intergenic |
ATCGTTTCTCTGAATTTCCC+AGG | 0.466281 | 4.2:+26631044 | None:intergenic |
TTCCTCAGAGCCTCAGCATA+AGG | 0.466595 | 4.2:+26631968 | None:intergenic |
ATGCCTTGTCAACTTCCTCT+TGG | 0.467018 | 4.2:+26626799 | None:intergenic |
CTACCAGTTTGCAGATAATG+AGG | 0.467112 | 4.2:-26628885 | MS.gene82364:intron |
TCATTTATCAAAGAGAAAAC+AGG | 0.468618 | 4.2:-26628809 | MS.gene82364:CDS |
CAGGAGCCAGATGCAGCCCT+TGG | 0.468994 | 4.2:-26631405 | MS.gene82364:CDS |
CCAGATGCAGCCCTTGGGAA+TGG | 0.470381 | 4.2:-26631399 | MS.gene82364:CDS |
TGTACATCAAACATTGCATC+TGG | 0.471752 | 4.2:+26628773 | None:intergenic |
GCCAAATGTTTGATTTGGAA+TGG | 0.475175 | 4.2:+26633488 | None:intergenic |
TTAGCCATGCGAACCATCAT+TGG | 0.477716 | 4.2:+26629500 | None:intergenic |
TTACTGGGCTCAAATTTCTC+AGG | 0.477856 | 4.2:+26632251 | None:intergenic |
CCTGGGGATGAATCAATAGA+AGG | 0.480958 | 4.2:-26630472 | MS.gene82364:CDS |
GCACGCTTTGAAAAGAGATC+AGG | 0.482626 | 4.2:-26630388 | MS.gene82364:CDS |
ATTAATATCCTAATCAGCTC+AGG | 0.483954 | 4.2:+26630289 | None:intergenic |
GTTGCTGAAATGCTAATTCC+TGG | 0.484765 | 4.2:-26627519 | MS.gene82364:CDS |
TGATTATTTCCTTGTTGGCA+AGG | 0.485154 | 4.2:-26626844 | MS.gene82364:CDS |
GCTTATGATGTTCCAATACC+TGG | 0.487169 | 4.2:-26630931 | MS.gene82364:CDS |
GGGCATTGTTAAATGCAATT+GGG | 0.488583 | 4.2:-26632009 | MS.gene82364:CDS |
GGGTTACAATTTAGAGGATG+TGG | 0.490297 | 4.2:-26631942 | MS.gene82364:CDS |
ATTGGGAATTTACAACTCTC+AGG | 0.491640 | 4.2:-26631992 | MS.gene82364:CDS |
TGAGAAATTTGAGCCCAGTA+AGG | 0.492541 | 4.2:-26632249 | MS.gene82364:CDS |
AGCTCAGGAATGCAGAGTGT+TGG | 0.492601 | 4.2:+26630304 | None:intergenic |
AAAATAATAACCAAATGGAT+TGG | 0.492703 | 4.2:-26629189 | MS.gene82364:CDS |
CCATGCGAACCATCATTGGC+AGG | 0.495713 | 4.2:+26629504 | None:intergenic |
GTAAAATTCATCACAGATGT+AGG | 0.497209 | 4.2:-26627966 | MS.gene82364:CDS |
CATGTCTATGGAGTATCTAC+AGG | 0.498390 | 4.2:-26632126 | MS.gene82364:intron |
TGATCCAAACCTGCCAATGA+TGG | 0.501005 | 4.2:-26629513 | MS.gene82364:CDS |
ACGGCAGTTACTGAATATCA+TGG | 0.501069 | 4.2:-26628114 | MS.gene82364:CDS |
TGCTGGGACAATTCACTGCC+AGG | 0.501865 | 4.2:+26627501 | None:intergenic |
CCCAAGGTTTGAAGAAGTAA+AGG | 0.502177 | 4.2:-26626952 | MS.gene82364:CDS |
GAAAGAAAGAGCAGAAGGAA+AGG | 0.502282 | 4.2:-26627210 | MS.gene82364:intron |
TCTGTTACATTCTATACCCT+GGG | 0.504284 | 4.2:-26630489 | MS.gene82364:CDS |
GAACTGAAAGAACGACTCAT+TGG | 0.504413 | 4.2:-26633361 | MS.gene82364:CDS |
ATGGCTAACCTATGTGTTGT+TGG | 0.505350 | 4.2:-26629485 | MS.gene82364:CDS |
TCTTGGCACTCCAAGTAGCT+AGG | 0.505786 | 4.2:+26626816 | None:intergenic |
TTTAAGCTGGGAGAAAGCTT+GGG | 0.507352 | 4.2:-26630254 | MS.gene82364:CDS |
GGGGATATGGACTTAGATAC+AGG | 0.507764 | 4.2:-26631314 | MS.gene82364:CDS |
TAGGATATTAATAGATGTGA+AGG | 0.509727 | 4.2:-26630278 | MS.gene82364:CDS |
ATGTCAATCTTGAACACAGC+TGG | 0.511229 | 4.2:-26626419 | MS.gene82364:CDS |
CAAAGCGTGCAATGATATCC+TGG | 0.512626 | 4.2:+26630401 | None:intergenic |
TGCAAATTGGAACTCTCGAT+GGG | 0.513093 | 4.2:-26627316 | MS.gene82364:CDS |
TTAGTAAAATAATAACCAAA+TGG | 0.516483 | 4.2:-26629194 | MS.gene82364:CDS |
AACACTGAATTACCCTGCAT+GGG | 0.518781 | 4.2:-26631334 | MS.gene82364:CDS |
ATTTATAGATGGGAAATCCC+TGG | 0.520518 | 4.2:-26631062 | MS.gene82364:intron |
CGTATAAATTCAGCAGTGAC+CGG | 0.523558 | 4.2:-26626394 | MS.gene82364:CDS |
TCTATGGAGAAGTTATTTCA+GGG | 0.524340 | 4.2:-26631002 | MS.gene82364:CDS |
ATCTGTTACATTCTATACCC+TGG | 0.525611 | 4.2:-26630490 | MS.gene82364:CDS |
CAACACTGAATTACCCTGCA+TGG | 0.525876 | 4.2:-26631335 | MS.gene82364:CDS |
AATGGATTGGAACAGAAGAC+TGG | 0.527079 | 4.2:-26629176 | MS.gene82364:CDS |
ATGAAGTTGTTTCTGAGTCT+GGG | 0.528015 | 4.2:-26629829 | MS.gene82364:CDS |
TACCATTCTCAACAACCTGC+AGG | 0.529812 | 4.2:-26633534 | MS.gene82364:CDS |
TACCACCACTTTATCTGGAA+GGG | 0.530834 | 4.2:+26630345 | None:intergenic |
AGCGTATTCATGAATACAAA+CGG | 0.531740 | 4.2:-26628133 | MS.gene82364:CDS |
TAAGGTCAGGATTACAGAAA+CGG | 0.536410 | 4.2:+26629214 | None:intergenic |
AGGAGCCAGATGCAGCCCTT+GGG | 0.536797 | 4.2:-26631404 | MS.gene82364:CDS |
TGTGTTTAGTACAGCTGGGA+TGG | 0.537168 | 4.2:-26627384 | MS.gene82364:intron |
TATTGAGTTGCCGGATTCGG+TGG | 0.537392 | 4.2:-26629750 | MS.gene82364:CDS |
GCTAACCTATGTGTTGTTGG+TGG | 0.537986 | 4.2:-26629482 | MS.gene82364:CDS |
TGGCATATTCATGAATAGTC+CGG | 0.538204 | 4.2:+26626375 | None:intergenic |
CCACCATAAACTTGCGATTG+TGG | 0.538883 | 4.2:-26630894 | MS.gene82364:CDS |
GAATTGATGGGATCTTTGGA+AGG | 0.539315 | 4.2:-26626888 | MS.gene82364:CDS |
CTAAGTCCATATCCCCATGC+AGG | 0.541539 | 4.2:+26631321 | None:intergenic |
GGATCTTTGGAAGGGAATGA+AGG | 0.543201 | 4.2:-26626879 | MS.gene82364:CDS |
GGCCTAATCCTCCATTCCCA+AGG | 0.543436 | 4.2:+26631388 | None:intergenic |
TGCCTGCAGGTTGTTGAGAA+TGG | 0.544681 | 4.2:+26633532 | None:intergenic |
TTAAGGAAAGAAAGAGCAGA+AGG | 0.545172 | 4.2:-26627215 | MS.gene82364:CDS |
CTTCTATTGATTCATCCCCA+GGG | 0.545352 | 4.2:+26630473 | None:intergenic |
AATTTCCTCAACAGGATCAT+CGG | 0.550548 | 4.2:+26629700 | None:intergenic |
AGATGTGAAGGGTTTAAGCT+GGG | 0.551577 | 4.2:-26630266 | MS.gene82364:CDS |
TGCAGTTTGTACCAGACCCA+AGG | 0.553369 | 4.2:-26626968 | MS.gene82364:intron |
GATGGAGCTAAGCAATGGAC+TGG | 0.553513 | 4.2:-26630976 | MS.gene82364:CDS |
GAAGTTATTTCAGGGCCAGA+TGG | 0.555318 | 4.2:-26630994 | MS.gene82364:CDS |
GTAAAGGCATATGTTAGAAG+TGG | 0.555712 | 4.2:-26626936 | MS.gene82364:CDS |
ATTATGCTCAGCCTCTCTCC+AGG | 0.555876 | 4.2:-26630419 | MS.gene82364:CDS |
CTTGGCACTCCAAGTAGCTA+GGG | 0.557235 | 4.2:+26626817 | None:intergenic |
TTTATAGATGGGAAATCCCT+GGG | 0.557702 | 4.2:-26631061 | MS.gene82364:intron |
ATGGGGTGACACCTAGAAGA+TGG | 0.559245 | 4.2:-26629239 | MS.gene82364:CDS |
CCTGCCAATGATGGTTCGCA+TGG | 0.561781 | 4.2:-26629504 | MS.gene82364:CDS |
GTACCACCACTTTATCTGGA+AGG | 0.562027 | 4.2:+26630344 | None:intergenic |
TACAACTACGACGAATTGAT+GGG | 0.563220 | 4.2:-26626900 | MS.gene82364:CDS |
GGACTCCCTTCCAGATAAAG+TGG | 0.565184 | 4.2:-26630350 | MS.gene82364:CDS |
TTGGGAATGGAGGATTAGGC+CGG | 0.569055 | 4.2:-26631386 | MS.gene82364:CDS |
TGCAACGAATTCATTTGAAG+TGG | 0.569514 | 4.2:+26632334 | None:intergenic |
AATTTATGATAAGGGAATCA+CGG | 0.571565 | 4.2:+26632201 | None:intergenic |
CTAGAAAGCAAGAAGCAAGC+CGG | 0.574391 | 4.2:+26631367 | None:intergenic |
GATGCAGCCCTTGGGAATGG+AGG | 0.575620 | 4.2:-26631396 | MS.gene82364:CDS |
CGGCAGTTACTGAATATCAT+GGG | 0.576863 | 4.2:-26628113 | MS.gene82364:CDS |
GAAATTGGCTGTACTTCGCA+AGG | 0.577155 | 4.2:-26629139 | MS.gene82364:intron |
TCTGTGTGTTTAGTACAGCT+GGG | 0.577930 | 4.2:-26627388 | MS.gene82364:intron |
GGCCAGATGGAGCTAAGCAA+TGG | 0.578954 | 4.2:-26630981 | MS.gene82364:CDS |
GTTGCAAAGTAAGCCTTACT+GGG | 0.579338 | 4.2:+26632236 | None:intergenic |
TTGGAAGGGAATGAAGGCTA+TGG | 0.582974 | 4.2:-26626873 | MS.gene82364:CDS |
TTTATTATTTCCACATGTCG+AGG | 0.583310 | 4.2:+26629994 | None:intergenic |
CAACATATGTTCAAGCCAAG+AGG | 0.583384 | 4.2:-26627992 | MS.gene82364:CDS |
TATGGACTTAGATACAGGTA+TGG | 0.584953 | 4.2:-26631309 | MS.gene82364:CDS |
CGACGAAGAAGAAGATGTAG+TGG | 0.585058 | 4.2:-26629609 | MS.gene82364:CDS |
AGGATATTAATAGATGTGAA+GGG | 0.588908 | 4.2:-26630277 | MS.gene82364:CDS |
TAGGGAAGTCCTTGCCAACA+AGG | 0.589757 | 4.2:+26626835 | None:intergenic |
GCTGAGGCTCTGAGGAAACT+GGG | 0.590579 | 4.2:-26631962 | MS.gene82364:CDS |
GGATTTACTTCCTCGACATG+TGG | 0.591364 | 4.2:-26630004 | MS.gene82364:CDS |
GACGAAGAAGAAGATGTAGT+GGG | 0.591470 | 4.2:-26629608 | MS.gene82364:CDS |
GTTTAGTACAGCTGGGATGG+AGG | 0.592504 | 4.2:-26627381 | MS.gene82364:intron |
TCGTTTCTCTGAATTTCCCA+GGG | 0.593399 | 4.2:+26631045 | None:intergenic |
TTATCTATACCTAATGTGCT+GGG | 0.596409 | 4.2:+26627485 | None:intergenic |
CAACATATGAATATTATGAG+AGG | 0.596709 | 4.2:-26632172 | MS.gene82364:CDS |
TCTTGCCGATGATCCTGTTG+AGG | 0.596729 | 4.2:-26629705 | MS.gene82364:CDS |
GCCTAATCCTCCATTCCCAA+GGG | 0.606925 | 4.2:+26631389 | None:intergenic |
AGGGTAATTCAGTGTTGCCA+AGG | 0.609943 | 4.2:+26631341 | None:intergenic |
TAAGTCCATATCCCCATGCA+GGG | 0.610745 | 4.2:+26631322 | None:intergenic |
AATTGATGGGATCTTTGGAA+GGG | 0.613386 | 4.2:-26626887 | MS.gene82364:CDS |
GTCCTTATGCTGAGGCTCTG+AGG | 0.613621 | 4.2:-26631970 | MS.gene82364:CDS |
TGAAAAGAGATCAGGAATGA+CGG | 0.617393 | 4.2:-26630380 | MS.gene82364:CDS |
TATAACGAAGGACGGTCAGG+AGG | 0.619104 | 4.2:-26631271 | MS.gene82364:CDS |
TGTCATGAAGAATGCAGAGA+AGG | 0.620102 | 4.2:-26630800 | MS.gene82364:intron |
AGGTGAGCTTGAATGCCTGC+AGG | 0.620576 | 4.2:+26633519 | None:intergenic |
CACGAGCTGAAGAAATTGCA+GGG | 0.620721 | 4.2:-26627238 | MS.gene82364:CDS |
AACATATGAATATTATGAGA+GGG | 0.623422 | 4.2:-26632171 | MS.gene82364:CDS |
GATTTGGAATGGGAATGTAA+AGG | 0.624865 | 4.2:+26633499 | None:intergenic |
AATGAAAGAATTGAGTGCTG+AGG | 0.627614 | 4.2:-26628069 | MS.gene82364:CDS |
GGAGCTAAGCAATGGACTGG+AGG | 0.628655 | 4.2:-26630973 | MS.gene82364:CDS |
TGCAATGATATCCTGGAGAG+AGG | 0.629144 | 4.2:+26630408 | None:intergenic |
ATTCAAACAACGTATAACGA+AGG | 0.632464 | 4.2:-26631283 | MS.gene82364:CDS |
ACAGCTGGGATGGAGGCCAG+TGG | 0.632889 | 4.2:-26627374 | MS.gene82364:CDS |
GTGCAAATTGGAACTCTCGA+TGG | 0.634864 | 4.2:-26627317 | MS.gene82364:CDS |
GTGCCAAGAGGAAGTTGACA+AGG | 0.636085 | 4.2:-26626802 | MS.gene82364:CDS |
TTTGAAGGCTTTCAATACTG+GGG | 0.639183 | 4.2:-26630842 | MS.gene82364:CDS |
CCACAATCGCAAGTTTATGG+TGG | 0.645345 | 4.2:+26630894 | None:intergenic |
ATGGATTGGAACAGAAGACT+GGG | 0.645354 | 4.2:-26629175 | MS.gene82364:CDS |
TATTGGAACATCATAAGCAA+CGG | 0.649331 | 4.2:+26630936 | None:intergenic |
ACTCTCAGGTCCTTATGCTG+AGG | 0.656696 | 4.2:-26631978 | MS.gene82364:CDS |
ATTCCAGAATAAAACAAATG+GGG | 0.658074 | 4.2:-26629256 | MS.gene82364:CDS |
AAACAACGTATAACGAAGGA+CGG | 0.658557 | 4.2:-26631279 | MS.gene82364:CDS |
TGTTGCCAGCGACAAAGCAG+CGG | 0.667849 | 4.2:-26633383 | MS.gene82364:CDS |
CAACAAGGAAATAATCAGCA+CGG | 0.670194 | 4.2:+26626850 | None:intergenic |
TAGCTACTTGGAGTGCCAAG+AGG | 0.674127 | 4.2:-26626814 | MS.gene82364:CDS |
GTGCCTCTGGTAGAACTGTG+TGG | 0.675525 | 4.2:+26630055 | None:intergenic |
ATGAGGATCTGCAATCAGAG+TGG | 0.676696 | 4.2:-26628868 | MS.gene82364:CDS |
ACACTGAATTACCCTGCATG+GGG | 0.680238 | 4.2:-26631333 | MS.gene82364:CDS |
CTCCCTTCCAGATAAAGTGG+TGG | 0.681896 | 4.2:-26630347 | MS.gene82364:CDS |
AGTTGCTGAAAACTGGCTTG+AGG | 0.695370 | 4.2:-26631247 | MS.gene82364:intron |
AAAGAACGACTCATTGGACA+AGG | 0.698404 | 4.2:-26633355 | MS.gene82364:intron |
AAACCACACAGTTCTACCAG+AGG | 0.720864 | 4.2:-26630058 | MS.gene82364:CDS |
CTGTTACATTCTATACCCTG+GGG | 0.720986 | 4.2:-26630488 | MS.gene82364:CDS |
ACGAAGAAGAAGATGTAGTG+GGG | 0.722856 | 4.2:-26629607 | MS.gene82364:CDS |
GCAAATTGGAACTCTCGATG+GGG | 0.738537 | 4.2:-26627315 | MS.gene82364:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.2 | gene | 26626337 | 26633566 | 26626337 | ID=MS.gene82364 |
chr4.2 | mRNA | 26626337 | 26633566 | 26626337 | ID=MS.gene82364.t1;Parent=MS.gene82364 |
chr4.2 | exon | 26633356 | 26633566 | 26633356 | ID=MS.gene82364.t1.exon1;Parent=MS.gene82364.t1 |
chr4.2 | CDS | 26633356 | 26633566 | 26633356 | ID=cds.MS.gene82364.t1;Parent=MS.gene82364.t1 |
chr4.2 | exon | 26632127 | 26632359 | 26632127 | ID=MS.gene82364.t1.exon2;Parent=MS.gene82364.t1 |
chr4.2 | CDS | 26632127 | 26632359 | 26632127 | ID=cds.MS.gene82364.t1;Parent=MS.gene82364.t1 |
chr4.2 | exon | 26631934 | 26632035 | 26631934 | ID=MS.gene82364.t1.exon3;Parent=MS.gene82364.t1 |
chr4.2 | CDS | 26631934 | 26632035 | 26631934 | ID=cds.MS.gene82364.t1;Parent=MS.gene82364.t1 |
chr4.2 | exon | 26631248 | 26631424 | 26631248 | ID=MS.gene82364.t1.exon4;Parent=MS.gene82364.t1 |
chr4.2 | CDS | 26631248 | 26631424 | 26631248 | ID=cds.MS.gene82364.t1;Parent=MS.gene82364.t1 |
chr4.2 | exon | 26630801 | 26631076 | 26630801 | ID=MS.gene82364.t1.exon5;Parent=MS.gene82364.t1 |
chr4.2 | CDS | 26630801 | 26631076 | 26630801 | ID=cds.MS.gene82364.t1;Parent=MS.gene82364.t1 |
chr4.2 | exon | 26630241 | 26630512 | 26630241 | ID=MS.gene82364.t1.exon6;Parent=MS.gene82364.t1 |
chr4.2 | CDS | 26630241 | 26630512 | 26630241 | ID=cds.MS.gene82364.t1;Parent=MS.gene82364.t1 |
chr4.2 | exon | 26629978 | 26630095 | 26629978 | ID=MS.gene82364.t1.exon7;Parent=MS.gene82364.t1 |
chr4.2 | CDS | 26629978 | 26630095 | 26629978 | ID=cds.MS.gene82364.t1;Parent=MS.gene82364.t1 |
chr4.2 | exon | 26629409 | 26629858 | 26629409 | ID=MS.gene82364.t1.exon8;Parent=MS.gene82364.t1 |
chr4.2 | CDS | 26629409 | 26629858 | 26629409 | ID=cds.MS.gene82364.t1;Parent=MS.gene82364.t1 |
chr4.2 | exon | 26629140 | 26629292 | 26629140 | ID=MS.gene82364.t1.exon9;Parent=MS.gene82364.t1 |
chr4.2 | CDS | 26629140 | 26629292 | 26629140 | ID=cds.MS.gene82364.t1;Parent=MS.gene82364.t1 |
chr4.2 | exon | 26628772 | 26628900 | 26628772 | ID=MS.gene82364.t1.exon10;Parent=MS.gene82364.t1 |
chr4.2 | CDS | 26628772 | 26628900 | 26628772 | ID=cds.MS.gene82364.t1;Parent=MS.gene82364.t1 |
chr4.2 | exon | 26627923 | 26628159 | 26627923 | ID=MS.gene82364.t1.exon11;Parent=MS.gene82364.t1 |
chr4.2 | CDS | 26627923 | 26628159 | 26627923 | ID=cds.MS.gene82364.t1;Parent=MS.gene82364.t1 |
chr4.2 | exon | 26627495 | 26627571 | 26627495 | ID=MS.gene82364.t1.exon12;Parent=MS.gene82364.t1 |
chr4.2 | CDS | 26627495 | 26627571 | 26627495 | ID=cds.MS.gene82364.t1;Parent=MS.gene82364.t1 |
chr4.2 | exon | 26627211 | 26627397 | 26627211 | ID=MS.gene82364.t1.exon13;Parent=MS.gene82364.t1 |
chr4.2 | CDS | 26627211 | 26627397 | 26627211 | ID=cds.MS.gene82364.t1;Parent=MS.gene82364.t1 |
chr4.2 | exon | 26626785 | 26626985 | 26626785 | ID=MS.gene82364.t1.exon14;Parent=MS.gene82364.t1 |
chr4.2 | CDS | 26626785 | 26626985 | 26626785 | ID=cds.MS.gene82364.t1;Parent=MS.gene82364.t1 |
chr4.2 | exon | 26626337 | 26626453 | 26626337 | ID=MS.gene82364.t1.exon15;Parent=MS.gene82364.t1 |
chr4.2 | CDS | 26626337 | 26626453 | 26626337 | ID=cds.MS.gene82364.t1;Parent=MS.gene82364.t1 |
Gene Sequence |
Protein sequence |