Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82542.t1 | XP_003600927.2 | 99.6 | 262 | 1 | 0 | 1 | 262 | 1 | 262 | 2.60E-137 | 498 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82542.t1 | Q9XEF0 | 42.9 | 275 | 116 | 8 | 3 | 261 | 1 | 250 | 2.8e-39 | 163.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82542.t1 | G7JBT8 | 99.6 | 262 | 1 | 0 | 1 | 262 | 1 | 262 | 1.9e-137 | 498.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene82542.t1 | TF | bHLH |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene82542 | 0.818002 | 2.46E-52 | -1.69E-46 |
| MS.gene049254 | MS.gene82542 | 0.824846 | 6.47E-54 | -1.69E-46 |
| MS.gene049435 | MS.gene82542 | 0.821739 | 3.44E-53 | -1.69E-46 |
| MS.gene050807 | MS.gene82542 | 0.814298 | 1.65E-51 | -1.69E-46 |
| MS.gene051180 | MS.gene82542 | 0.825306 | 5.04E-54 | -1.69E-46 |
| MS.gene051247 | MS.gene82542 | 0.808407 | 3.15E-50 | -1.69E-46 |
| MS.gene051279 | MS.gene82542 | 0.80367 | 3.12E-49 | -1.69E-46 |
| MS.gene051800 | MS.gene82542 | 0.802916 | 4.47E-49 | -1.69E-46 |
| MS.gene052586 | MS.gene82542 | 0.815326 | 9.79E-52 | -1.69E-46 |
| MS.gene052773 | MS.gene82542 | 0.804761 | 1.85E-49 | -1.69E-46 |
| MS.gene053166 | MS.gene82542 | 0.843477 | 1.37E-58 | -1.69E-46 |
| MS.gene053226 | MS.gene82542 | 0.803795 | 2.94E-49 | -1.69E-46 |
| MS.gene05415 | MS.gene82542 | 0.813142 | 2.97E-51 | -1.69E-46 |
| MS.gene054236 | MS.gene82542 | 0.809482 | 1.85E-50 | -1.69E-46 |
| MS.gene054467 | MS.gene82542 | 0.816241 | 6.12E-52 | -1.69E-46 |
| MS.gene054468 | MS.gene82542 | 0.803629 | 3.18E-49 | -1.69E-46 |
| MS.gene054576 | MS.gene82542 | 0.812856 | 3.44E-51 | -1.69E-46 |
| MS.gene055227 | MS.gene82542 | 0.807014 | 6.22E-50 | -1.69E-46 |
| MS.gene055623 | MS.gene82542 | 0.821323 | 4.29E-53 | -1.69E-46 |
| MS.gene055701 | MS.gene82542 | 0.815151 | 1.07E-51 | -1.69E-46 |
| MS.gene055818 | MS.gene82542 | 0.835154 | 1.98E-56 | -1.69E-46 |
| MS.gene055926 | MS.gene82542 | 0.817893 | 2.60E-52 | -1.69E-46 |
| MS.gene05604 | MS.gene82542 | 0.815075 | 1.11E-51 | -1.69E-46 |
| MS.gene056050 | MS.gene82542 | 0.803707 | 3.07E-49 | -1.69E-46 |
| MS.gene056162 | MS.gene82542 | 0.807596 | 4.68E-50 | -1.69E-46 |
| MS.gene056173 | MS.gene82542 | 0.803646 | 3.16E-49 | -1.69E-46 |
| MS.gene056174 | MS.gene82542 | 0.805144 | 1.54E-49 | -1.69E-46 |
| MS.gene056252 | MS.gene82542 | 0.803215 | 3.88E-49 | -1.69E-46 |
| MS.gene056595 | MS.gene82542 | 0.811307 | 7.48E-51 | -1.69E-46 |
| MS.gene057026 | MS.gene82542 | 0.803151 | 4.00E-49 | -1.69E-46 |
| MS.gene057208 | MS.gene82542 | 0.823727 | 1.19E-53 | -1.69E-46 |
| MS.gene057414 | MS.gene82542 | 0.801883 | 7.30E-49 | -1.69E-46 |
| MS.gene057598 | MS.gene82542 | 0.802726 | 4.89E-49 | -1.69E-46 |
| MS.gene057693 | MS.gene82542 | 0.80116 | 1.03E-48 | -1.69E-46 |
| MS.gene058625 | MS.gene82542 | 0.804837 | 1.78E-49 | -1.69E-46 |
| MS.gene058979 | MS.gene82542 | 0.819089 | 1.39E-52 | -1.69E-46 |
| MS.gene059438 | MS.gene82542 | 0.804741 | 1.87E-49 | -1.69E-46 |
| MS.gene059439 | MS.gene82542 | 0.829515 | 4.93E-55 | -1.69E-46 |
| MS.gene05973 | MS.gene82542 | 0.805136 | 1.54E-49 | -1.69E-46 |
| MS.gene060322 | MS.gene82542 | 0.815381 | 9.52E-52 | -1.69E-46 |
| MS.gene06052 | MS.gene82542 | 0.818628 | 1.77E-52 | -1.69E-46 |
| MS.gene060879 | MS.gene82542 | 0.811208 | 7.85E-51 | -1.69E-46 |
| MS.gene060998 | MS.gene82542 | 0.813957 | 1.97E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82542.t1 | MTR_3g070970 | 99.618 | 262 | 1 | 0 | 1 | 262 | 1 | 262 | 0.0 | 536 |
| MS.gene82542.t1 | MTR_1g093750 | 45.503 | 189 | 94 | 3 | 66 | 254 | 151 | 330 | 2.55e-43 | 150 |
| MS.gene82542.t1 | MTR_2g015890 | 44.444 | 144 | 66 | 3 | 73 | 215 | 67 | 197 | 2.91e-28 | 108 |
| MS.gene82542.t1 | MTR_4g079760 | 35.533 | 197 | 106 | 4 | 65 | 254 | 60 | 242 | 4.86e-24 | 97.4 |
| MS.gene82542.t1 | MTR_2g015890 | 46.667 | 120 | 51 | 2 | 73 | 192 | 67 | 173 | 4.87e-24 | 96.7 |
| MS.gene82542.t1 | MTR_4g087920 | 33.668 | 199 | 112 | 6 | 67 | 255 | 69 | 257 | 5.11e-23 | 95.1 |
| MS.gene82542.t1 | MTR_2g091190 | 34.054 | 185 | 105 | 4 | 63 | 240 | 49 | 223 | 5.56e-23 | 94.7 |
| MS.gene82542.t1 | MTR_5g032375 | 35.028 | 177 | 85 | 5 | 73 | 236 | 45 | 204 | 1.12e-19 | 85.1 |
| MS.gene82542.t1 | MTR_5g066080 | 29.596 | 223 | 107 | 5 | 51 | 234 | 7 | 218 | 2.35e-16 | 76.6 |
| MS.gene82542.t1 | MTR_2g015890 | 39.474 | 114 | 51 | 3 | 105 | 215 | 1 | 99 | 2.57e-15 | 72.0 |
| MS.gene82542.t1 | MTR_2g015890 | 41.111 | 90 | 36 | 2 | 105 | 192 | 1 | 75 | 2.46e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82542.t1 | AT2G40200 | 44.245 | 278 | 108 | 10 | 3 | 261 | 1 | 250 | 2.39e-54 | 176 |
| MS.gene82542.t1 | AT1G68810 | 41.538 | 195 | 98 | 4 | 66 | 255 | 167 | 350 | 3.76e-36 | 132 |
| MS.gene82542.t1 | AT3G56770 | 36.757 | 185 | 105 | 4 | 61 | 243 | 33 | 207 | 5.52e-34 | 123 |
| MS.gene82542.t1 | AT3G25710 | 46.405 | 153 | 70 | 2 | 69 | 220 | 128 | 269 | 6.59e-34 | 125 |
| MS.gene82542.t1 | AT2G41130 | 34.973 | 183 | 106 | 4 | 63 | 242 | 57 | 229 | 2.75e-25 | 100 |
| MS.gene82542.t1 | AT4G38070 | 33.108 | 148 | 82 | 3 | 73 | 220 | 92 | 222 | 1.50e-18 | 82.8 |
Find 36 sgRNAs with CRISPR-Local
Find 82 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTGATGATGAAGCAATTT+TGG | 0.183435 | 3.1:-58234294 | None:intergenic |
| TATATTGGTGCTTTGTTCTA+AGG | 0.203318 | 3.1:+58234214 | MS.gene82542:CDS |
| ATTTCCCATTTGGATGAGTA+TGG | 0.281846 | 3.1:+58232695 | None:intergenic |
| GTCTTAAACCTTTGAGGACT+TGG | 0.282951 | 3.1:-58234142 | None:intergenic |
| AATATCTCTGACTCTTCTTC+TGG | 0.300411 | 3.1:+58232828 | MS.gene82542:CDS |
| ATTAGTTCAGAGAACAATTC+TGG | 0.307068 | 3.1:-58234119 | None:intergenic |
| TTTGGTCACTGCTGATTTAA+GGG | 0.341399 | 3.1:-58234276 | None:intergenic |
| TTGTAAGTCTTAAACCTTTG+AGG | 0.389696 | 3.1:-58234148 | None:intergenic |
| CTCTGCTTGACTATGACTCT+TGG | 0.398647 | 3.1:-58232928 | None:intergenic |
| CTCTGCCTCTTACTTCTTGT+AGG | 0.400975 | 3.1:-58234329 | None:intergenic |
| ATGGACAAAGCAGCATTACT+AGG | 0.419485 | 3.1:+58233903 | MS.gene82542:CDS |
| TCTTCAACACTCCCTTCAAT+AGG | 0.436660 | 3.1:-58232888 | None:intergenic |
| TGGCAGAATCAAAAGTATAT+TGG | 0.438346 | 3.1:+58234199 | MS.gene82542:CDS |
| TTTGTTCACTTTGTTAGTGT+TGG | 0.440377 | 3.1:-58234048 | None:intergenic |
| GAAGAGTCAGAGATATTATG+AGG | 0.460214 | 3.1:-58232822 | None:intergenic |
| TGATTTACCTTATCAGACTT+AGG | 0.462054 | 3.1:-58233005 | None:intergenic |
| CAAAATTGCTTCATCATCAA+TGG | 0.471187 | 3.1:+58234295 | MS.gene82542:CDS |
| GGCAGCATTTGAGCACAAAC+TGG | 0.479615 | 3.1:+58232742 | MS.gene82542:CDS |
| ACTTATTCCTAAGTCTGATA+AGG | 0.480745 | 3.1:+58232998 | MS.gene82542:CDS |
| GATACTTCATCAATTTCAGT+TGG | 0.481484 | 3.1:-58233993 | None:intergenic |
| TCATGGAATTTACCTATTGA+AGG | 0.482372 | 3.1:+58232876 | MS.gene82542:CDS |
| CAGAGAAAAGACGTAGAGAC+AGG | 0.494900 | 3.1:+58232946 | MS.gene82542:CDS |
| GCCGACATAGCAAGTGTTGG+TGG | 0.503196 | 3.1:+58234179 | MS.gene82542:CDS |
| GCCACCAACACTTGCTATGT+CGG | 0.503342 | 3.1:-58234180 | None:intergenic |
| AATATAGTGAATTTCAGTCA+TGG | 0.537343 | 3.1:+58232859 | MS.gene82542:CDS |
| CATGGAATTTACCTATTGAA+GGG | 0.539204 | 3.1:+58232877 | MS.gene82542:CDS |
| ATCTGTGTAGGTACAGTCAC+AGG | 0.552887 | 3.1:-58232795 | None:intergenic |
| AGATCTAAAGCGAAAAGCAA+TGG | 0.560117 | 3.1:+58233947 | MS.gene82542:CDS |
| ATTGTCCTACAAGAAGTAAG+AGG | 0.570567 | 3.1:+58234324 | MS.gene82542:CDS |
| GAACTAATCCAAGTCCTCAA+AGG | 0.579974 | 3.1:+58234134 | MS.gene82542:CDS |
| TGGACAAAGCAGCATTACTA+GGG | 0.580902 | 3.1:+58233904 | MS.gene82542:CDS |
| TGGTTTCATCTTCAACAACA+TGG | 0.610583 | 3.1:-58234028 | None:intergenic |
| AATTACTATACAAAATGAGA+AGG | 0.613826 | 3.1:-58234362 | None:intergenic |
| TTATGAGGTAGTATCTGTGT+AGG | 0.633198 | 3.1:-58232807 | None:intergenic |
| AAAGCCGACATAGCAAGTGT+TGG | 0.637609 | 3.1:+58234176 | MS.gene82542:CDS |
| ACTACAATGATTCTTCTGAG+TGG | 0.704840 | 3.1:+58232721 | MS.gene82542:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTTTTTTTTTTTAAAAA+TGG | + | chr3.1:58233556-58233575 | MS.gene82542:intron | 0.0% |
| !! | CTGAAAATAATTTGAGAAAA+TGG | - | chr3.1:58233714-58233733 | None:intergenic | 20.0% |
| !!! | AAAATTTTCTAGATTCATTG+TGG | + | chr3.1:58233424-58233443 | MS.gene82542:intron | 20.0% |
| !!! | TACAATTTTCTGCAATATTA+AGG | + | chr3.1:58233811-58233830 | MS.gene82542:intron | 20.0% |
| ! | AAAATGGAATTACCTACTTA+GGG | + | chr3.1:58233130-58233149 | MS.gene82542:intron | 25.0% |
| ! | AATATAGTGAATTTCAGTCA+TGG | + | chr3.1:58232859-58232878 | MS.gene82542:CDS | 25.0% |
| ! | ACAAATGATTATGTTATGCA+AGG | - | chr3.1:58233873-58233892 | None:intergenic | 25.0% |
| ! | ACATATTTCATGCAAGAAAA+TGG | + | chr3.1:58233114-58233133 | MS.gene82542:intron | 25.0% |
| ! | CAAATGATTATGTTATGCAA+GGG | - | chr3.1:58233872-58233891 | None:intergenic | 25.0% |
| ! | TATAATTCAAAGCATGTACT+TGG | + | chr3.1:58233288-58233307 | MS.gene82542:intron | 25.0% |
| !! | ATCCTATATTTTCTCCAATA+GGG | - | chr3.1:58233512-58233531 | None:intergenic | 25.0% |
| !! | TCAAATATCTTATTTCGTAC+CGG | - | chr3.1:58233594-58233613 | None:intergenic | 25.0% |
| !! | TCTATTTCTTATTGTGTGTT+TGG | + | chr3.1:58233352-58233371 | MS.gene82542:intron | 25.0% |
| AATGCAACATCTTATCACTT+GGG | - | chr3.1:58233160-58233179 | None:intergenic | 30.0% | |
| ACTTATTCCTAAGTCTGATA+AGG | + | chr3.1:58232998-58233017 | MS.gene82542:CDS | 30.0% | |
| AGTAAAATTGCCAGAATAAC+GGG | - | chr3.1:58233453-58233472 | None:intergenic | 30.0% | |
| AGTCTTGAGTATGAACAATT+TGG | + | chr3.1:58233327-58233346 | MS.gene82542:intron | 30.0% | |
| ATCATTTGTATACTTGCAGA+TGG | + | chr3.1:58233884-58233903 | MS.gene82542:intron | 30.0% | |
| ATGTTGCATTCATTCAATTC+AGG | + | chr3.1:58233170-58233189 | MS.gene82542:intron | 30.0% | |
| ATTAGTTCAGAGAACAATTC+TGG | - | chr3.1:58234122-58234141 | None:intergenic | 30.0% | |
| CAAAATTGCTTCATCATCAA+TGG | + | chr3.1:58234295-58234314 | MS.gene82542:CDS | 30.0% | |
| CATGGAATTTACCTATTGAA+GGG | + | chr3.1:58232877-58232896 | MS.gene82542:CDS | 30.0% | |
| GAAAATGGAATTACCTACTT+AGG | + | chr3.1:58233129-58233148 | MS.gene82542:intron | 30.0% | |
| GAGTAAAATTGCCAGAATAA+CGG | - | chr3.1:58233454-58233473 | None:intergenic | 30.0% | |
| GATACTTCATCAATTTCAGT+TGG | - | chr3.1:58233996-58234015 | None:intergenic | 30.0% | |
| GCACTAATACTTCGTATTAA+AGG | + | chr3.1:58233630-58233649 | MS.gene82542:intron | 30.0% | |
| GGACTTACATAAAATGTTGT+TGG | + | chr3.1:58233242-58233261 | MS.gene82542:intron | 30.0% | |
| TCATGGAATTTACCTATTGA+AGG | + | chr3.1:58232876-58232895 | MS.gene82542:CDS | 30.0% | |
| TGATTTACCTTATCAGACTT+AGG | - | chr3.1:58233008-58233027 | None:intergenic | 30.0% | |
| TTATTGTGTGTTTGGATTGA+TGG | + | chr3.1:58233360-58233379 | MS.gene82542:intron | 30.0% | |
| TTGTAAGTCTTAAACCTTTG+AGG | - | chr3.1:58234151-58234170 | None:intergenic | 30.0% | |
| TTTGTTCACTTTGTTAGTGT+TGG | - | chr3.1:58234051-58234070 | None:intergenic | 30.0% | |
| ! | ATTTTCAGTGTGTACATGTT+TGG | + | chr3.1:58233726-58233745 | MS.gene82542:intron | 30.0% |
| ! | CATCCTATATTTTCTCCAAT+AGG | - | chr3.1:58233513-58233532 | None:intergenic | 30.0% |
| ! | CATTTTATGTAAGTCCCAAA+AGG | - | chr3.1:58233238-58233257 | None:intergenic | 30.0% |
| ! | TATATTGGTGCTTTGTTCTA+AGG | + | chr3.1:58234214-58234233 | MS.gene82542:CDS | 30.0% |
| ! | TCCTATATTTTCTCCAATAG+GGG | - | chr3.1:58233511-58233530 | None:intergenic | 30.0% |
| ! | TGGCAGAATCAAAAGTATAT+TGG | + | chr3.1:58234199-58234218 | MS.gene82542:CDS | 30.0% |
| ! | TTTGACAAAAGCTACCTTTT+GGG | + | chr3.1:58233221-58233240 | MS.gene82542:intron | 30.0% |
| ! | TTTTGACAAAAGCTACCTTT+TGG | + | chr3.1:58233220-58233239 | MS.gene82542:intron | 30.0% |
| !!! | CATTGATGATGAAGCAATTT+TGG | - | chr3.1:58234297-58234316 | None:intergenic | 30.0% |
| AATATCTCTGACTCTTCTTC+TGG | + | chr3.1:58232828-58232847 | MS.gene82542:CDS | 35.0% | |
| ACTACAATGATTCTTCTGAG+TGG | + | chr3.1:58232721-58232740 | MS.gene82542:CDS | 35.0% | |
| ATCAATTCCTGATGCATGAA+TGG | - | chr3.1:58233480-58233499 | None:intergenic | 35.0% | |
| ATTGTCCTACAAGAAGTAAG+AGG | + | chr3.1:58234324-58234343 | MS.gene82542:CDS | 35.0% | |
| GAAGAGTCAGAGATATTATG+AGG | - | chr3.1:58232825-58232844 | None:intergenic | 35.0% | |
| GAATGCAACATCTTATCACT+TGG | - | chr3.1:58233161-58233180 | None:intergenic | 35.0% | |
| GTAAAATTGCCAGAATAACG+GGG | - | chr3.1:58233452-58233471 | None:intergenic | 35.0% | |
| TCCCCTATTGGAGAAAATAT+AGG | + | chr3.1:58233507-58233526 | MS.gene82542:intron | 35.0% | |
| TCGTATTAGTACCTGAAAGT+GGG | - | chr3.1:58233660-58233679 | None:intergenic | 35.0% | |
| TGGTTTCATCTTCAACAACA+TGG | - | chr3.1:58234031-58234050 | None:intergenic | 35.0% | |
| TTATGAGGTAGTATCTGTGT+AGG | - | chr3.1:58232810-58232829 | None:intergenic | 35.0% | |
| ! | AGATCTAAAGCGAAAAGCAA+TGG | + | chr3.1:58233947-58233966 | MS.gene82542:CDS | 35.0% |
| !! | TTTGGTCACTGCTGATTTAA+GGG | - | chr3.1:58234279-58234298 | None:intergenic | 35.0% |
| !!! | TTTTGGTCACTGCTGATTTA+AGG | - | chr3.1:58234280-58234299 | None:intergenic | 35.0% |
| AGTAATTACTGAGACAGCCA+CGG | - | chr3.1:58233762-58233781 | None:intergenic | 40.0% | |
| ATGGACAAAGCAGCATTACT+AGG | + | chr3.1:58233903-58233922 | MS.gene82542:CDS | 40.0% | |
| GAACTAATCCAAGTCCTCAA+AGG | + | chr3.1:58234134-58234153 | MS.gene82542:CDS | 40.0% | |
| GTCGTATTAGTACCTGAAAG+TGG | - | chr3.1:58233661-58233680 | None:intergenic | 40.0% | |
| TCTTCAACACTCCCTTCAAT+AGG | - | chr3.1:58232891-58232910 | None:intergenic | 40.0% | |
| TGGACAAAGCAGCATTACTA+GGG | + | chr3.1:58233904-58233923 | MS.gene82542:CDS | 40.0% | |
| TTGATTTCCACTTCCCCTAT+TGG | + | chr3.1:58233495-58233514 | MS.gene82542:intron | 40.0% | |
| ! | ATTTTCTCCAATAGGGGAAG+TGG | - | chr3.1:58233505-58233524 | None:intergenic | 40.0% |
| ! | GTCTTAAACCTTTGAGGACT+TGG | - | chr3.1:58234145-58234164 | None:intergenic | 40.0% |
| ! | TATCTTATTTCGTACCGGTG+TGG | - | chr3.1:58233589-58233608 | None:intergenic | 40.0% |
| ! | TTAAAGGTATGCCCACTTTC+AGG | + | chr3.1:58233646-58233665 | MS.gene82542:intron | 40.0% |
| AAAATGGTCTCCTACCACAC+CGG | + | chr3.1:58233572-58233591 | MS.gene82542:intron | 45.0% | |
| AAAGCCGACATAGCAAGTGT+TGG | + | chr3.1:58234176-58234195 | MS.gene82542:CDS | 45.0% | |
| ACTCGATCCATTCATGCATC+AGG | + | chr3.1:58233470-58233489 | MS.gene82542:intron | 45.0% | |
| ATCTGTGTAGGTACAGTCAC+AGG | - | chr3.1:58232798-58232817 | None:intergenic | 45.0% | |
| CAGAGAAAAGACGTAGAGAC+AGG | + | chr3.1:58232946-58232965 | MS.gene82542:CDS | 45.0% | |
| CTCTGCCTCTTACTTCTTGT+AGG | - | chr3.1:58234332-58234351 | None:intergenic | 45.0% | |
| CTCTGCTTGACTATGACTCT+TGG | - | chr3.1:58232931-58232950 | None:intergenic | 45.0% | |
| ! | CACTTGGGTTTTCCCTAAGT+AGG | - | chr3.1:58233145-58233164 | None:intergenic | 45.0% |
| ! | TTATTTCGTACCGGTGTGGT+AGG | - | chr3.1:58233585-58233604 | None:intergenic | 45.0% |
| AAGTCGCGTTGCAGTTCTGT+CGG | - | chr3.1:58233840-58233859 | None:intergenic | 50.0% | |
| ATTGTGGCTCCCCGTTATTC+TGG | + | chr3.1:58233440-58233459 | MS.gene82542:intron | 50.0% | |
| GGCAGCATTTGAGCACAAAC+TGG | + | chr3.1:58232742-58232761 | MS.gene82542:CDS | 50.0% | |
| !! | GCCACCAACACTTGCTATGT+CGG | - | chr3.1:58234183-58234202 | None:intergenic | 50.0% |
| AGTCGCGTTGCAGTTCTGTC+GGG | - | chr3.1:58233839-58233858 | None:intergenic | 55.0% | |
| !! | GCCGACATAGCAAGTGTTGG+TGG | + | chr3.1:58234179-58234198 | MS.gene82542:CDS | 55.0% |
| ! | TGTTTGGTGAGCAGCGTCCG+TGG | + | chr3.1:58233742-58233761 | MS.gene82542:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 58232708 | 58234379 | 58232708 | ID=MS.gene82542 |
| chr3.1 | mRNA | 58232708 | 58234379 | 58232708 | ID=MS.gene82542.t1;Parent=MS.gene82542 |
| chr3.1 | exon | 58232708 | 58233019 | 58232708 | ID=MS.gene82542.t1.exon1;Parent=MS.gene82542.t1 |
| chr3.1 | CDS | 58232708 | 58233019 | 58232708 | ID=cds.MS.gene82542.t1;Parent=MS.gene82542.t1 |
| chr3.1 | exon | 58233903 | 58234379 | 58233903 | ID=MS.gene82542.t1.exon2;Parent=MS.gene82542.t1 |
| chr3.1 | CDS | 58233903 | 58234379 | 58233903 | ID=cds.MS.gene82542.t1;Parent=MS.gene82542.t1 |
| Gene Sequence |
| Protein sequence |
