Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene85401.t1 | XP_024641908.1 | 98.7 | 315 | 4 | 0 | 1 | 315 | 1 | 315 | 2.30E-172 | 614.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene85401.t1 | Q9C9X3 | 53.9 | 317 | 141 | 2 | 1 | 314 | 1 | 315 | 6.4e-91 | 335.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene85401.t1 | A0A072ULQ2 | 98.7 | 315 | 4 | 0 | 1 | 315 | 1 | 315 | 1.6e-172 | 614.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene05156 | MS.gene85401 | 0.805249 | 1.46E-49 | -1.69E-46 |
MS.gene051959 | MS.gene85401 | 0.803729 | 3.03E-49 | -1.69E-46 |
MS.gene052053 | MS.gene85401 | 0.816416 | 5.59E-52 | -1.69E-46 |
MS.gene05878 | MS.gene85401 | 0.800813 | 1.21E-48 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene85401 | MS.gene00058 | PPI |
MS.gene28077 | MS.gene85401 | PPI |
MS.gene85401 | MS.gene67887 | PPI |
MS.gene85401 | MS.gene55897 | PPI |
MS.gene85401 | MS.gene89484 | PPI |
MS.gene061777 | MS.gene85401 | PPI |
MS.gene85401 | MS.gene058336 | PPI |
MS.gene85401 | MS.gene010215 | PPI |
MS.gene85401 | MS.gene92405 | PPI |
MS.gene056195 | MS.gene85401 | PPI |
MS.gene57291 | MS.gene85401 | PPI |
MS.gene45772 | MS.gene85401 | PPI |
MS.gene85401 | MS.gene035891 | PPI |
MS.gene016642 | MS.gene85401 | PPI |
MS.gene85401 | MS.gene030809 | PPI |
MS.gene85401 | MS.gene043964 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene85401.t1 | MTR_6g071595 | 98.730 | 315 | 4 | 0 | 1 | 315 | 1 | 315 | 0.0 | 646 |
MS.gene85401.t1 | MTR_1g112520 | 88.254 | 315 | 37 | 0 | 1 | 315 | 1 | 315 | 0.0 | 563 |
MS.gene85401.t1 | MTR_6g071615 | 87.302 | 315 | 40 | 0 | 1 | 315 | 1 | 315 | 0.0 | 559 |
MS.gene85401.t1 | MTR_6g071605 | 83.492 | 315 | 52 | 0 | 1 | 315 | 1 | 315 | 0.0 | 553 |
MS.gene85401.t1 | MTR_8g107640 | 77.070 | 314 | 72 | 0 | 1 | 314 | 1 | 314 | 0.0 | 520 |
MS.gene85401.t1 | MTR_6g071595 | 98.400 | 250 | 4 | 0 | 1 | 250 | 1 | 250 | 0.0 | 511 |
MS.gene85401.t1 | MTR_1g033560 | 60.063 | 318 | 121 | 3 | 1 | 315 | 1 | 315 | 5.01e-137 | 390 |
MS.gene85401.t1 | MTR_8g038150 | 38.170 | 317 | 189 | 3 | 1 | 312 | 1 | 315 | 1.28e-69 | 219 |
MS.gene85401.t1 | MTR_8g038180 | 37.025 | 316 | 196 | 3 | 1 | 315 | 1 | 314 | 2.95e-66 | 210 |
MS.gene85401.t1 | MTR_8g038220 | 37.261 | 314 | 192 | 4 | 1 | 312 | 1 | 311 | 1.91e-64 | 206 |
MS.gene85401.t1 | MTR_8g038220 | 36.624 | 314 | 193 | 4 | 1 | 312 | 1 | 310 | 4.52e-63 | 202 |
MS.gene85401.t1 | MTR_5g063670 | 35.759 | 316 | 199 | 4 | 1 | 314 | 1 | 314 | 7.74e-63 | 202 |
MS.gene85401.t1 | MTR_3g018780 | 35.238 | 315 | 201 | 3 | 1 | 314 | 1 | 313 | 1.60e-62 | 201 |
MS.gene85401.t1 | MTR_3g018790 | 36.422 | 313 | 196 | 3 | 1 | 312 | 1 | 311 | 1.32e-60 | 196 |
MS.gene85401.t1 | MTR_0276s0050 | 36.076 | 316 | 194 | 4 | 1 | 312 | 1 | 312 | 6.98e-60 | 194 |
MS.gene85401.t1 | MTR_2g031980 | 34.824 | 313 | 201 | 3 | 1 | 312 | 1 | 311 | 2.55e-58 | 190 |
MS.gene85401.t1 | MTR_8g038210 | 35.256 | 312 | 200 | 2 | 1 | 312 | 1 | 310 | 3.20e-58 | 190 |
MS.gene85401.t1 | MTR_8g038210 | 34.295 | 312 | 203 | 2 | 1 | 312 | 1 | 310 | 1.91e-56 | 185 |
MS.gene85401.t1 | MTR_6g028030 | 33.453 | 278 | 169 | 7 | 45 | 310 | 34 | 307 | 1.18e-38 | 139 |
MS.gene85401.t1 | MTR_3g018790 | 31.950 | 241 | 162 | 2 | 74 | 313 | 19 | 258 | 2.30e-36 | 131 |
MS.gene85401.t1 | MTR_8g038170 | 29.412 | 306 | 193 | 6 | 23 | 312 | 13 | 311 | 4.43e-35 | 129 |
MS.gene85401.t1 | MTR_8g038170 | 29.412 | 306 | 193 | 6 | 23 | 312 | 13 | 311 | 4.43e-35 | 129 |
MS.gene85401.t1 | MTR_3g018920 | 31.604 | 212 | 112 | 3 | 1 | 212 | 1 | 179 | 1.61e-25 | 100 |
MS.gene85401.t1 | MTR_3g018925 | 42.391 | 92 | 53 | 0 | 222 | 313 | 16 | 107 | 8.07e-16 | 72.8 |
MS.gene85401.t1 | MTR_8g038090 | 41.772 | 79 | 44 | 2 | 236 | 312 | 12 | 90 | 2.60e-12 | 62.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene85401.t1 | AT1G68090 | 53.943 | 317 | 141 | 2 | 1 | 314 | 1 | 315 | 2.45e-123 | 356 |
MS.gene85401.t1 | AT1G68090 | 51.190 | 252 | 118 | 2 | 1 | 249 | 1 | 250 | 4.11e-88 | 264 |
MS.gene85401.t1 | AT1G68090 | 25.352 | 213 | 138 | 5 | 108 | 311 | 37 | 237 | 6.31e-13 | 67.8 |
MS.gene85401.t1 | AT5G10230 | 38.608 | 316 | 192 | 2 | 1 | 315 | 1 | 315 | 2.06e-75 | 234 |
MS.gene85401.t1 | AT5G10220 | 38.050 | 318 | 193 | 3 | 1 | 315 | 1 | 317 | 4.44e-74 | 231 |
MS.gene85401.t1 | AT5G65020 | 39.683 | 315 | 185 | 4 | 1 | 312 | 1 | 313 | 5.17e-74 | 231 |
MS.gene85401.t1 | AT1G35720 | 37.658 | 316 | 194 | 3 | 1 | 314 | 1 | 315 | 7.60e-67 | 212 |
MS.gene85401.t1 | AT5G65020 | 38.621 | 290 | 173 | 4 | 26 | 312 | 11 | 298 | 4.44e-64 | 204 |
MS.gene85401.t1 | AT5G12380 | 35.016 | 317 | 195 | 5 | 1 | 312 | 1 | 311 | 2.89e-61 | 197 |
MS.gene85401.t1 | AT2G38760 | 33.125 | 320 | 204 | 5 | 1 | 312 | 1 | 318 | 2.02e-51 | 172 |
MS.gene85401.t1 | AT2G38750 | 30.449 | 312 | 190 | 8 | 22 | 314 | 15 | 318 | 5.11e-33 | 124 |
MS.gene85401.t1 | AT2G38750 | 30.195 | 308 | 188 | 8 | 26 | 314 | 2 | 301 | 1.79e-32 | 122 |
Find 66 sgRNAs with CRISPR-Local
Find 207 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGCTCCGTTCACTGAATATT+TGG | 0.211500 | 6.4:-49260293 | None:intergenic |
TATAAGGCAATGAAAGGTTT+AGG | 0.249516 | 6.4:+49260805 | MS.gene85401:CDS |
CTCGATGCAGGTGTTGTATA+AGG | 0.335847 | 6.4:+49260789 | MS.gene85401:intron |
ACCTTTGCAAAATACTTTGC+TGG | 0.342116 | 6.4:-49260524 | None:intergenic |
AATGAAGCATCCGGGAATTT+CGG | 0.345214 | 6.4:+49260464 | MS.gene85401:CDS |
CAGTTATACCATTCAAAGTT+TGG | 0.348370 | 6.4:+49259268 | MS.gene85401:CDS |
CAAAGCTGGGGAGAAGAAAC+TGG | 0.361804 | 6.4:+49260248 | MS.gene85401:CDS |
TTACTTCCGTGGCCGCTTCA+AGG | 0.381428 | 6.4:-49259207 | None:intergenic |
ATAAGGCAATGAAAGGTTTA+GGG | 0.382653 | 6.4:+49260806 | MS.gene85401:CDS |
TGAACGGAGCAGCGCGCATT+TGG | 0.389281 | 6.4:+49260305 | MS.gene85401:CDS |
TCTCTAGGAGAAGGAGGAAT+TGG | 0.392592 | 6.4:-49257311 | None:intergenic |
ATGTTGCTTTGTATTCTTGT+TGG | 0.414709 | 6.4:-49258863 | None:intergenic |
GCATCACGTGCTGCAGGGTC+AGG | 0.420816 | 6.4:-49259148 | None:intergenic |
GAAATCGAATTAAACACTTC+CGG | 0.423423 | 6.4:+49259307 | MS.gene85401:CDS |
GGAGCTGAAAGGAAAATTAG+AGG | 0.424898 | 6.4:+49258917 | MS.gene85401:CDS |
AACATCTTTGACTAGTGATT+CGG | 0.425606 | 6.4:-49260991 | None:intergenic |
AAGTGCGAGACCGAAATTCC+CGG | 0.431810 | 6.4:-49260474 | None:intergenic |
TAATAGAGAAATTGCTCAAA+AGG | 0.435118 | 6.4:+49260209 | MS.gene85401:CDS |
ATTTCTGCATCACGTGCTGC+AGG | 0.436134 | 6.4:-49259154 | None:intergenic |
ATCAGACTGCAGTTCTACTT+TGG | 0.440143 | 6.4:+49259122 | MS.gene85401:intron |
CTAATGATAGCACACTCATA+AGG | 0.441949 | 6.4:+49260830 | MS.gene85401:CDS |
CATTAGGAAGTCGCTGGTTG+TGG | 0.443829 | 6.4:+49259177 | MS.gene85401:CDS |
GATAAACGCCAAACTTTGAA+TGG | 0.462297 | 6.4:-49259276 | None:intergenic |
GCAAAGGTTCTGTACAAAGC+TGG | 0.473173 | 6.4:+49260234 | MS.gene85401:CDS |
CACGTGATGCAGAAATCATT+AGG | 0.480060 | 6.4:+49259161 | MS.gene85401:CDS |
GCAGTAAAGAATGAAGCATC+CGG | 0.483236 | 6.4:+49260455 | MS.gene85401:CDS |
TCGTATTATCATGACATGTA+TGG | 0.483429 | 6.4:+49260339 | MS.gene85401:CDS |
CTGAAACATCAGGCAACTAC+AGG | 0.485303 | 6.4:+49260944 | MS.gene85401:CDS |
CAAAGGTTCTGTACAAAGCT+GGG | 0.486209 | 6.4:+49260235 | MS.gene85401:CDS |
TTTAGATATTGTAGTTGGGA+TGG | 0.486564 | 6.4:-49259244 | None:intergenic |
CAGAAGCCTTGAAGCGGCCA+CGG | 0.489696 | 6.4:+49259201 | MS.gene85401:CDS |
CCTCGAGGCCTTCGTGTCGA+GGG | 0.494196 | 6.4:-49260185 | None:intergenic |
ACCTCGAGGCCTTCGTGTCG+AGG | 0.495564 | 6.4:-49260186 | None:intergenic |
TTTGTATTCTTGTTGGAGGT+AGG | 0.504801 | 6.4:-49258856 | None:intergenic |
GCTATCGAAACGCTTAGTTT+CGG | 0.507005 | 6.4:+49258896 | MS.gene85401:CDS |
TTGCTTTGTATTCTTGTTGG+AGG | 0.507782 | 6.4:-49258860 | None:intergenic |
TAATGATAGCACACTCATAA+GGG | 0.514286 | 6.4:+49260831 | MS.gene85401:CDS |
GCAGTTCACTCTGAAACATC+AGG | 0.517462 | 6.4:+49260934 | MS.gene85401:CDS |
CTAGGAGAAGGAGGAATTGG+AGG | 0.521648 | 6.4:-49257308 | None:intergenic |
AGTTGCATGGCATCATCTCT+AGG | 0.543315 | 6.4:-49257326 | None:intergenic |
AAAAGCACTGTAAAGTTGCA+TGG | 0.543793 | 6.4:-49257339 | None:intergenic |
CGCTTAGTTTCGGAGCTGAA+AGG | 0.547329 | 6.4:+49258906 | MS.gene85401:CDS |
AACTTGTCAAGATCTTGCTT+AGG | 0.548123 | 6.4:+49260151 | MS.gene85401:intron |
CACTTCCGGAGATCATCAAA+AGG | 0.568952 | 6.4:+49259321 | MS.gene85401:CDS |
CTCGAGGCCTTCGTGTCGAG+GGG | 0.578942 | 6.4:-49260184 | None:intergenic |
AATTGCTCAAAAGGATGCAA+AGG | 0.581121 | 6.4:+49260218 | MS.gene85401:CDS |
GAGGCCTTCGTGTCGAGGGG+TGG | 0.584779 | 6.4:-49260181 | None:intergenic |
TTGTCCAAATATTCAGTGAA+CGG | 0.584875 | 6.4:+49260289 | MS.gene85401:CDS |
GTATGGTCACTCATTGAAGA+AGG | 0.585411 | 6.4:+49260356 | MS.gene85401:CDS |
GTGTTGTATAAGGCAATGAA+AGG | 0.599181 | 6.4:+49260799 | MS.gene85401:CDS |
AGAAATCATTAGGAAGTCGC+TGG | 0.602316 | 6.4:+49259171 | MS.gene85401:CDS |
CAGTAAAGAATGAAGCATCC+GGG | 0.603685 | 6.4:+49260456 | MS.gene85401:CDS |
TGTGGACAGAAGCCTTGAAG+CGG | 0.613077 | 6.4:+49259195 | MS.gene85401:CDS |
ATGGCATCATCTCTAGGAGA+AGG | 0.615001 | 6.4:-49257320 | None:intergenic |
ATACAAAGCAACATATTCTG+AGG | 0.622438 | 6.4:+49258872 | MS.gene85401:CDS |
GTCATGATAATACGAACTGA+CGG | 0.635703 | 6.4:-49260331 | None:intergenic |
TTTCTGCATCACGTGCTGCA+GGG | 0.638169 | 6.4:-49259153 | None:intergenic |
ACGCGAACATATTACTTCCG+TGG | 0.638767 | 6.4:-49259218 | None:intergenic |
GCATCATCTCTAGGAGAAGG+AGG | 0.640486 | 6.4:-49257317 | None:intergenic |
CCCTCGACACGAAGGCCTCG+AGG | 0.644373 | 6.4:+49260185 | MS.gene85401:CDS |
AAAGGTTCTGTACAAAGCTG+GGG | 0.669384 | 6.4:+49260236 | MS.gene85401:CDS |
CAATTTCTCTATTAACCTCG+AGG | 0.673114 | 6.4:-49260200 | None:intergenic |
TGAAACATCAGGCAACTACA+GGG | 0.675131 | 6.4:+49260945 | MS.gene85401:CDS |
AAAGCTGGGGAGAAGAAACT+GGG | 0.680899 | 6.4:+49260249 | MS.gene85401:CDS |
TCATAAGGGTCATTGTAACA+AGG | 0.683484 | 6.4:+49260845 | MS.gene85401:CDS |
TTAACCACCCCTCGACACGA+AGG | 0.686957 | 6.4:+49260177 | MS.gene85401:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTAGACATAAAATACTTATT+AGG | - | chr6.4:49258646-49258665 | None:intergenic | 15.0% |
!!! | ATTGAAAGAAGAATTATTTT+TGG | + | chr6.4:49257576-49257595 | MS.gene85401:intron | 15.0% |
!!! | ATTTCAAGTTAATAAAACAA+AGG | + | chr6.4:49260091-49260110 | MS.gene85401:intron | 15.0% |
!!! | ATTTCAATTTTGTAATGATT+TGG | - | chr6.4:49258382-49258401 | None:intergenic | 15.0% |
!!! | CCAATTTTATGAAAATAATT+AGG | - | chr6.4:49258120-49258139 | None:intergenic | 15.0% |
!!! | CCTAATTATTTTCATAAAAT+TGG | + | chr6.4:49258117-49258136 | MS.gene85401:intron | 15.0% |
!!! | GATTTTTTGTAAAATAGTTT+TGG | - | chr6.4:49259667-49259686 | None:intergenic | 15.0% |
!!! | TAAAATTTTAGACGTTTAAA+AGG | - | chr6.4:49260737-49260756 | None:intergenic | 15.0% |
!!! | TTTCAATTTTGTAATGATTT+GGG | - | chr6.4:49258381-49258400 | None:intergenic | 15.0% |
!! | AAATTGCTATAATTAACTGA+TGG | + | chr6.4:49259738-49259757 | MS.gene85401:intron | 20.0% |
!! | ATCAGTTAATTATAGCAATT+TGG | - | chr6.4:49259739-49259758 | None:intergenic | 20.0% |
!! | GTCAATATTCATAAATCATA+AGG | - | chr6.4:49257429-49257448 | None:intergenic | 20.0% |
!! | TATTAGGACTGTTTAAAAAA+CGG | + | chr6.4:49259804-49259823 | MS.gene85401:intron | 20.0% |
!! | TATTATTGGCATAAGAATTA+TGG | - | chr6.4:49259914-49259933 | None:intergenic | 20.0% |
!! | TCATAAAATTGGATTGTAAA+GGG | + | chr6.4:49258128-49258147 | MS.gene85401:intron | 20.0% |
!! | TTCATAAAATTGGATTGTAA+AGG | + | chr6.4:49258127-49258146 | MS.gene85401:intron | 20.0% |
!! | TTCTAGATTCAAAATGTTAA+AGG | + | chr6.4:49259975-49259994 | MS.gene85401:intron | 20.0% |
!!! | ACTGATATGTTACATTATTT+TGG | + | chr6.4:49259555-49259574 | MS.gene85401:intron | 20.0% |
!!! | AGTAAAAGAAAGAATTTTAG+AGG | - | chr6.4:49257903-49257922 | None:intergenic | 20.0% |
!!! | ATAATCAATTTTACACATCT+AGG | - | chr6.4:49257502-49257521 | None:intergenic | 20.0% |
!!! | ATAATTGATTCTGATATGTT+TGG | + | chr6.4:49257637-49257656 | MS.gene85401:intron | 20.0% |
!!! | TACATCTCTAAAATCAATTT+TGG | - | chr6.4:49257618-49257637 | None:intergenic | 20.0% |
!!! | TTTCAAGTTAAATTCATATC+AGG | + | chr6.4:49260433-49260452 | MS.gene85401:intron | 20.0% |
! | AACTAAAAGTGAGTTATGTT+TGG | - | chr6.4:49257789-49257808 | None:intergenic | 25.0% |
! | ACTTAAAAGTCCTTATCTAA+AGG | - | chr6.4:49259944-49259963 | None:intergenic | 25.0% |
! | ACTTAGAAACATTATCATGA+AGG | - | chr6.4:49260069-49260088 | None:intergenic | 25.0% |
! | ATCTTAGGTATGAAAAACTT+TGG | + | chr6.4:49259450-49259469 | MS.gene85401:intron | 25.0% |
! | CTATAATTAACTGATGGTTA+AGG | + | chr6.4:49259744-49259763 | MS.gene85401:intron | 25.0% |
! | CTTTCATAAACACTGTTTAA+AGG | - | chr6.4:49258054-49258073 | None:intergenic | 25.0% |
! | GACATAAAATACTTATTAGG+AGG | - | chr6.4:49258643-49258662 | None:intergenic | 25.0% |
! | TAATAGAGAAATTGCTCAAA+AGG | + | chr6.4:49260209-49260228 | MS.gene85401:CDS | 25.0% |
!! | CATAGACAGTATAATTTTCT+CGG | + | chr6.4:49258410-49258429 | MS.gene85401:intron | 25.0% |
!! | TCTTGTATTATGCATAGTTT+TGG | + | chr6.4:49258081-49258100 | MS.gene85401:intron | 25.0% |
!!! | AACTTGTTTTAGTGTATGTT+TGG | + | chr6.4:49257473-49257492 | MS.gene85401:intron | 25.0% |
!!! | AATTGTTTTATGATCCCTAT+AGG | - | chr6.4:49259401-49259420 | None:intergenic | 25.0% |
!!! | ACTGTTTTAGATATTGTAGT+TGG | - | chr6.4:49259252-49259271 | None:intergenic | 25.0% |
!!! | ATTATGCATAGTTTTGGAAT+TGG | + | chr6.4:49258087-49258106 | MS.gene85401:intron | 25.0% |
!!! | ATTGTTTTATGATCCCTATA+GGG | - | chr6.4:49259400-49259419 | None:intergenic | 25.0% |
!!! | CAGTTTTGTTAGATTATGTT+TGG | - | chr6.4:49258300-49258319 | None:intergenic | 25.0% |
!!! | CTGTTTTAGATATTGTAGTT+GGG | - | chr6.4:49259251-49259270 | None:intergenic | 25.0% |
!!! | GACAAGTTTTTTACATAAAG+CGG | - | chr6.4:49260139-49260158 | None:intergenic | 25.0% |
!!! | GATTTTGACTAAAATTGAGT+TGG | - | chr6.4:49257988-49258007 | None:intergenic | 25.0% |
AAAAAAAGGTTCCATTTGCA+CGG | - | chr6.4:49258746-49258765 | None:intergenic | 30.0% | |
AAACTGAACCGAATTGTTTA+TGG | + | chr6.4:49259580-49259599 | MS.gene85401:intron | 30.0% | |
AACAGTCCTAATATTTGAGT+TGG | - | chr6.4:49259797-49259816 | None:intergenic | 30.0% | |
AACTTCATGCTCAACATAAA+CGG | - | chr6.4:49259368-49259387 | None:intergenic | 30.0% | |
AAGTTACTGAACACTAACTA+CGG | - | chr6.4:49257458-49257477 | None:intergenic | 30.0% | |
AAGTTGAATGAAATCCCTAT+AGG | + | chr6.4:49259383-49259402 | MS.gene85401:intron | 30.0% | |
AATCAATTCTTGTGTGTGTT+TGG | - | chr6.4:49257865-49257884 | None:intergenic | 30.0% | |
ACTGATCCAACTCAAATATT+AGG | + | chr6.4:49259788-49259807 | MS.gene85401:intron | 30.0% | |
AGACTAACTAACTAACTAAC+TGG | + | chr6.4:49258604-49258623 | MS.gene85401:intron | 30.0% | |
AGTTGAATGAAATCCCTATA+GGG | + | chr6.4:49259384-49259403 | MS.gene85401:intron | 30.0% | |
ATAAGGCAATGAAAGGTTTA+GGG | + | chr6.4:49260806-49260825 | MS.gene85401:CDS | 30.0% | |
ATACAAAGCAACATATTCTG+AGG | + | chr6.4:49258872-49258891 | MS.gene85401:CDS | 30.0% | |
ATCACAAATTAGTCACGTTA+AGG | + | chr6.4:49259480-49259499 | MS.gene85401:intron | 30.0% | |
CAACTCTGACATGTAAATAT+CGG | - | chr6.4:49260674-49260693 | None:intergenic | 30.0% | |
CAGTTATACCATTCAAAGTT+TGG | + | chr6.4:49259268-49259287 | MS.gene85401:CDS | 30.0% | |
CGTTCAATTCAATGTTATGA+TGG | - | chr6.4:49258992-49259011 | None:intergenic | 30.0% | |
GAAATCGAATTAAACACTTC+CGG | + | chr6.4:49259307-49259326 | MS.gene85401:CDS | 30.0% | |
GAACTATGAACAATCCTAAA+AGG | - | chr6.4:49259511-49259530 | None:intergenic | 30.0% | |
GAATCAGGATGGAAAAAAAA+AGG | - | chr6.4:49258760-49258779 | None:intergenic | 30.0% | |
GAGTTTATCATAGACTATTG+CGG | - | chr6.4:49258251-49258270 | None:intergenic | 30.0% | |
GTAAGAGAGTAAAACTTGAA+TGG | + | chr6.4:49258515-49258534 | MS.gene85401:intron | 30.0% | |
GTTAAATCTCAGTTACAGTA+CGG | + | chr6.4:49259835-49259854 | MS.gene85401:intron | 30.0% | |
TAAAATTGGATTGTAAAGGG+TGG | + | chr6.4:49258131-49258150 | MS.gene85401:intron | 30.0% | |
TAACATAATCAGCACAAGTT+AGG | - | chr6.4:49257384-49257403 | None:intergenic | 30.0% | |
TAATGATAGCACACTCATAA+GGG | + | chr6.4:49260831-49260850 | MS.gene85401:CDS | 30.0% | |
TACCATATTATGACGAACTA+GGG | + | chr6.4:49258471-49258490 | MS.gene85401:intron | 30.0% | |
TATAAGGCAATGAAAGGTTT+AGG | + | chr6.4:49260805-49260824 | MS.gene85401:CDS | 30.0% | |
TCACAAATTAGTCACGTTAA+GGG | + | chr6.4:49259481-49259500 | MS.gene85401:intron | 30.0% | |
TCATCTTCACTTCAACTTTA+GGG | + | chr6.4:49260553-49260572 | MS.gene85401:intron | 30.0% | |
TCGTATTATCATGACATGTA+TGG | + | chr6.4:49260339-49260358 | MS.gene85401:CDS | 30.0% | |
TGTAACATATCAGTTCGATT+TGG | - | chr6.4:49259549-49259568 | None:intergenic | 30.0% | |
TTACCATATTATGACGAACT+AGG | + | chr6.4:49258470-49258489 | MS.gene85401:intron | 30.0% | |
TTCATCTTCACTTCAACTTT+AGG | + | chr6.4:49260552-49260571 | MS.gene85401:intron | 30.0% | |
TTGAATATAACCACATTTGC+CGG | - | chr6.4:49260626-49260645 | None:intergenic | 30.0% | |
TTGTCCAAATATTCAGTGAA+CGG | + | chr6.4:49260289-49260308 | MS.gene85401:CDS | 30.0% | |
TTTAGATATTGTAGTTGGGA+TGG | - | chr6.4:49259247-49259266 | None:intergenic | 30.0% | |
! | ACACTGTTTAAAGGCTATTT+TGG | - | chr6.4:49258045-49258064 | None:intergenic | 30.0% |
! | CAACTTTACAGTGCTTTTAA+AGG | + | chr6.4:49257344-49257363 | MS.gene85401:CDS | 30.0% |
! | TTGGACAAATGTCTTTTCAT+CGG | - | chr6.4:49260277-49260296 | None:intergenic | 30.0% |
!! | ATGTTGCTTTGTATTCTTGT+TGG | - | chr6.4:49258866-49258885 | None:intergenic | 30.0% |
!! | ATTTGAGTTGGATCAGTATT+TGG | - | chr6.4:49259785-49259804 | None:intergenic | 30.0% |
!! | TCTATGGTTTTACAGGATTT+GGG | + | chr6.4:49258778-49258797 | MS.gene85401:intron | 30.0% |
!! | TTCTATGGTTTTACAGGATT+TGG | + | chr6.4:49258777-49258796 | MS.gene85401:intron | 30.0% |
!!! | ATTTTTGGTTTCACTTCTAG+AGG | + | chr6.4:49257591-49257610 | MS.gene85401:intron | 30.0% |
!!! | TTTTTGGTTTCACTTCTAGA+GGG | + | chr6.4:49257592-49257611 | MS.gene85401:intron | 30.0% |
!!! | TTTTTTCCATCCTGATTCTA+TGG | + | chr6.4:49258762-49258781 | MS.gene85401:intron | 30.0% |
AAAACTGTCTCATGATTCCA+TGG | + | chr6.4:49260040-49260059 | MS.gene85401:intron | 35.0% | |
AACTAGGGGAAAATGTAGTT+TGG | + | chr6.4:49258486-49258505 | MS.gene85401:intron | 35.0% | |
AACTTGTCAAGATCTTGCTT+AGG | + | chr6.4:49260151-49260170 | MS.gene85401:intron | 35.0% | |
AATTGCTCAAAAGGATGCAA+AGG | + | chr6.4:49260218-49260237 | MS.gene85401:CDS | 35.0% | |
ACCATATTATGACGAACTAG+GGG | + | chr6.4:49258472-49258491 | MS.gene85401:intron | 35.0% | |
ACCTTTGCAAAATACTTTGC+TGG | - | chr6.4:49260527-49260546 | None:intergenic | 35.0% | |
AGTGTCGTGTTTCATAGATT+AGG | + | chr6.4:49260699-49260718 | MS.gene85401:intron | 35.0% | |
ATAGTGCATGCCTTTAGATA+AGG | + | chr6.4:49259931-49259950 | MS.gene85401:intron | 35.0% | |
CAATTTCTCTATTAACCTCG+AGG | - | chr6.4:49260203-49260222 | None:intergenic | 35.0% | |
CACAAGTTAGGAGAGAAATA+AGG | - | chr6.4:49257372-49257391 | None:intergenic | 35.0% | |
CTAATGATAGCACACTCATA+AGG | + | chr6.4:49260830-49260849 | MS.gene85401:CDS | 35.0% | |
CTATGAACAATCCTAAAAGG+AGG | - | chr6.4:49259508-49259527 | None:intergenic | 35.0% | |
GATAAACGCCAAACTTTGAA+TGG | - | chr6.4:49259279-49259298 | None:intergenic | 35.0% | |
GATTGTTCATAGTTCGATTC+AGG | + | chr6.4:49259516-49259535 | MS.gene85401:intron | 35.0% | |
GGATATATAGAGCATGACTT+AGG | + | chr6.4:49258207-49258226 | MS.gene85401:intron | 35.0% | |
GTAAAACCATAGAATCAGGA+TGG | - | chr6.4:49258771-49258790 | None:intergenic | 35.0% | |
GTAATGATATTCCGTGCAAA+TGG | + | chr6.4:49258732-49258751 | MS.gene85401:intron | 35.0% | |
GTCATGATAATACGAACTGA+CGG | - | chr6.4:49260334-49260353 | None:intergenic | 35.0% | |
GTGTTGTATAAGGCAATGAA+AGG | + | chr6.4:49260799-49260818 | MS.gene85401:CDS | 35.0% | |
GTTATGCGGTTATAAAGTGA+GGG | - | chr6.4:49258343-49258362 | None:intergenic | 35.0% | |
TATATAGAGCATGACTTAGG+TGG | + | chr6.4:49258210-49258229 | MS.gene85401:intron | 35.0% | |
TCATAAGGGTCATTGTAACA+AGG | + | chr6.4:49260845-49260864 | MS.gene85401:CDS | 35.0% | |
TCCTGTAAAACCATAGAATC+AGG | - | chr6.4:49258775-49258794 | None:intergenic | 35.0% | |
TGTACTTGTGTGTGAATCTT+AGG | + | chr6.4:49259435-49259454 | MS.gene85401:intron | 35.0% | |
TTATGCGGTTATAAAGTGAG+GGG | - | chr6.4:49258342-49258361 | None:intergenic | 35.0% | |
TTGCTTTGTATTCTTGTTGG+AGG | - | chr6.4:49258863-49258882 | None:intergenic | 35.0% | |
TTTGTATTCTTGTTGGAGGT+AGG | - | chr6.4:49258859-49258878 | None:intergenic | 35.0% | |
! | CACACAAGAATTGATTCTTC+AGG | + | chr6.4:49257869-49257888 | MS.gene85401:intron | 35.0% |
! | CTAAAGGCATGCACTATTAT+TGG | - | chr6.4:49259928-49259947 | None:intergenic | 35.0% |
! | CTTGAATTACTAGCTTCAAG+TGG | - | chr6.4:49257705-49257724 | None:intergenic | 35.0% |
! | GATTTTCTTCTCGCACTTTT+GGG | + | chr6.4:49260967-49260986 | MS.gene85401:CDS | 35.0% |
!! | AAAAGCACTGTAAAGTTGCA+TGG | - | chr6.4:49257342-49257361 | None:intergenic | 35.0% |
!! | TAGGGAAAGTACTTCCTTTA+GGG | + | chr6.4:49260571-49260590 | MS.gene85401:intron | 35.0% |
!! | TCCAGCAAAGTATTTTGCAA+AGG | + | chr6.4:49260523-49260542 | MS.gene85401:CDS | 35.0% |
!! | TCCTGATTCTATGGTTTTAC+AGG | + | chr6.4:49258771-49258790 | MS.gene85401:intron | 35.0% |
!! | TTAGGGAAAGTACTTCCTTT+AGG | + | chr6.4:49260570-49260589 | MS.gene85401:intron | 35.0% |
AAAGGTTCTGTACAAAGCTG+GGG | + | chr6.4:49260236-49260255 | MS.gene85401:CDS | 40.0% | |
AAGTGGAATCTCGATTCTTG+AGG | - | chr6.4:49257688-49257707 | None:intergenic | 40.0% | |
ACCAGACTGGTATAAAGCTT+AGG | + | chr6.4:49259613-49259632 | MS.gene85401:intron | 40.0% | |
AGAAATCATTAGGAAGTCGC+TGG | + | chr6.4:49259171-49259190 | MS.gene85401:CDS | 40.0% | |
ATCAGACTGCAGTTCTACTT+TGG | + | chr6.4:49259122-49259141 | MS.gene85401:intron | 40.0% | |
ATTTGGGTATAGCTGAACAG+CGG | - | chr6.4:49258365-49258384 | None:intergenic | 40.0% | |
CAAAGGTTCTGTACAAAGCT+GGG | + | chr6.4:49260235-49260254 | MS.gene85401:CDS | 40.0% | |
CAAGGAACAGCTAGAAACTA+TGG | - | chr6.4:49260011-49260030 | None:intergenic | 40.0% | |
CACGTGATGCAGAAATCATT+AGG | + | chr6.4:49259161-49259180 | MS.gene85401:CDS | 40.0% | |
CATTATCATGAAGGCAACCA+TGG | - | chr6.4:49260060-49260079 | None:intergenic | 40.0% | |
GCTATCGAAACGCTTAGTTT+CGG | + | chr6.4:49258896-49258915 | MS.gene85401:CDS | 40.0% | |
GGAGCTGAAAGGAAAATTAG+AGG | + | chr6.4:49258917-49258936 | MS.gene85401:CDS | 40.0% | |
GGGACGAACCATAAACAATT+CGG | - | chr6.4:49259591-49259610 | None:intergenic | 40.0% | |
GGTATAAAGCTTAGGTGCAT+TGG | + | chr6.4:49259621-49259640 | MS.gene85401:intron | 40.0% | |
GGTTATGCGGTTATAAAGTG+AGG | - | chr6.4:49258344-49258363 | None:intergenic | 40.0% | |
GTATGGTCACTCATTGAAGA+AGG | + | chr6.4:49260356-49260375 | MS.gene85401:CDS | 40.0% | |
GTTCATAGTTCGATTCAGGA+AGG | + | chr6.4:49259520-49259539 | MS.gene85401:intron | 40.0% | |
TCCCCTAGTTCGTCATAATA+TGG | - | chr6.4:49258476-49258495 | None:intergenic | 40.0% | |
TGAAACATCAGGCAACTACA+GGG | + | chr6.4:49260945-49260964 | MS.gene85401:CDS | 40.0% | |
TGCTCCGTTCACTGAATATT+TGG | - | chr6.4:49260296-49260315 | None:intergenic | 40.0% | |
TGCTCTATATATCCAGTCCT+AGG | - | chr6.4:49258201-49258220 | None:intergenic | 40.0% | |
! | AATGAAGCATCCGGGAATTT+CGG | + | chr6.4:49260464-49260483 | MS.gene85401:CDS | 40.0% |
! | ACCTAAGCTTTATACCAGTC+TGG | - | chr6.4:49259617-49259636 | None:intergenic | 40.0% |
! | CAGTAAAGAATGAAGCATCC+GGG | + | chr6.4:49260456-49260475 | MS.gene85401:CDS | 40.0% |
! | GCAGTAAAGAATGAAGCATC+CGG | + | chr6.4:49260455-49260474 | MS.gene85401:CDS | 40.0% |
! | GGATTTTCTTCTCGCACTTT+TGG | + | chr6.4:49260966-49260985 | MS.gene85401:CDS | 40.0% |
! | TTTTTCGTAGCGGTTCAGTT+TGG | + | chr6.4:49259859-49259878 | MS.gene85401:intron | 40.0% |
!! | AAAACTGACTCGAGATGTGA+GGG | + | chr6.4:49258313-49258332 | MS.gene85401:intron | 40.0% |
!! | AGGGAAAGTACTTCCTTTAG+GGG | + | chr6.4:49260572-49260591 | MS.gene85401:intron | 40.0% |
!! | AGTTTCTAGCTGTTCCTTGT+TGG | + | chr6.4:49260012-49260031 | MS.gene85401:intron | 40.0% |
!! | GTTTCTAGCTGTTCCTTGTT+GGG | + | chr6.4:49260013-49260032 | MS.gene85401:intron | 40.0% |
!!! | ACAGTACGGTTTTTTCGTAG+CGG | + | chr6.4:49259849-49259868 | MS.gene85401:intron | 40.0% |
AAAGCTGGGGAGAAGAAACT+GGG | + | chr6.4:49260249-49260268 | MS.gene85401:CDS | 45.0% | |
ACGCGAACATATTACTTCCG+TGG | - | chr6.4:49259221-49259240 | None:intergenic | 45.0% | |
AGTTGCATGGCATCATCTCT+AGG | - | chr6.4:49257329-49257348 | None:intergenic | 45.0% | |
ATAGCTGAACAGCGGTTATG+CGG | - | chr6.4:49258357-49258376 | None:intergenic | 45.0% | |
CACTTCCGGAGATCATCAAA+AGG | + | chr6.4:49259321-49259340 | MS.gene85401:CDS | 45.0% | |
CTGAAACATCAGGCAACTAC+AGG | + | chr6.4:49260944-49260963 | MS.gene85401:CDS | 45.0% | |
CTTATACAACACCTGCATCG+AGG | - | chr6.4:49260791-49260810 | None:intergenic | 45.0% | |
GCAAAGGTTCTGTACAAAGC+TGG | + | chr6.4:49260234-49260253 | MS.gene85401:CDS | 45.0% | |
GCTTTATACCAGTCTGGTCT+GGG | - | chr6.4:49259611-49259630 | None:intergenic | 45.0% | |
TATATCCAGTCCTAGGCATG+AGG | - | chr6.4:49258194-49258213 | None:intergenic | 45.0% | |
TTCATAGCATGCGATGTCAC+CGG | + | chr6.4:49260604-49260623 | MS.gene85401:intron | 45.0% | |
! | ACGTTAAGGGTCCTCCTTTT+AGG | + | chr6.4:49259494-49259513 | MS.gene85401:intron | 45.0% |
! | AGCTTTATACCAGTCTGGTC+TGG | - | chr6.4:49259612-49259631 | None:intergenic | 45.0% |
! | ATGGCATCATCTCTAGGAGA+AGG | - | chr6.4:49257323-49257342 | None:intergenic | 45.0% |
! | CTCGATGCAGGTGTTGTATA+AGG | + | chr6.4:49260789-49260808 | MS.gene85401:intron | 45.0% |
! | TCTCTAGGAGAAGGAGGAAT+TGG | - | chr6.4:49257314-49257333 | None:intergenic | 45.0% |
!! | CAAAACTGACTCGAGATGTG+AGG | + | chr6.4:49258312-49258331 | MS.gene85401:intron | 45.0% |
!! | CCTCACCTTTTGATGATCTC+CGG | - | chr6.4:49259329-49259348 | None:intergenic | 45.0% |
!! | GAGGAAAGCGGGTTGAATAA+TGG | - | chr6.4:49258175-49258194 | None:intergenic | 45.0% |
!! | GCAGTTCACTCTGAAACATC+AGG | + | chr6.4:49260934-49260953 | MS.gene85401:CDS | 45.0% |
AAGTGCGAGACCGAAATTCC+CGG | - | chr6.4:49260477-49260496 | None:intergenic | 50.0% | |
AGTCCTAGGCATGAGGAAAG+CGG | - | chr6.4:49258187-49258206 | None:intergenic | 50.0% | |
ATTTCTGCATCACGTGCTGC+AGG | - | chr6.4:49259157-49259176 | None:intergenic | 50.0% | |
CAAAGCTGGGGAGAAGAAAC+TGG | + | chr6.4:49260248-49260267 | MS.gene85401:CDS | 50.0% | |
CCGGAGATCATCAAAAGGTG+AGG | + | chr6.4:49259326-49259345 | MS.gene85401:intron | 50.0% | |
CGCTTAGTTTCGGAGCTGAA+AGG | + | chr6.4:49258906-49258925 | MS.gene85401:CDS | 50.0% | |
CTAGGAGAAGGAGGAATTGG+AGG | - | chr6.4:49257311-49257330 | None:intergenic | 50.0% | |
TGAAGCACAGACACCCCTAA+AGG | - | chr6.4:49260588-49260607 | None:intergenic | 50.0% | |
TGTGGACAGAAGCCTTGAAG+CGG | + | chr6.4:49259195-49259214 | MS.gene85401:CDS | 50.0% | |
TTTCTGCATCACGTGCTGCA+GGG | - | chr6.4:49259156-49259175 | None:intergenic | 50.0% | |
! | CATTAGGAAGTCGCTGGTTG+TGG | + | chr6.4:49259177-49259196 | MS.gene85401:CDS | 50.0% |
! | GACAGTTTTTGCGCCCAACA+AGG | - | chr6.4:49260029-49260048 | None:intergenic | 50.0% |
! | GCATCATCTCTAGGAGAAGG+AGG | - | chr6.4:49257320-49257339 | None:intergenic | 50.0% |
! | TCACACTTTTGCCTCGATGC+AGG | + | chr6.4:49260777-49260796 | MS.gene85401:intron | 50.0% |
!! | GCTTAGGTGCATTGGTTCAG+TGG | + | chr6.4:49259629-49259648 | MS.gene85401:intron | 50.0% |
AACCCGCTTTCCTCATGCCT+AGG | + | chr6.4:49258181-49258200 | MS.gene85401:intron | 55.0% | |
GCTTTCCTCATGCCTAGGAC+TGG | + | chr6.4:49258186-49258205 | MS.gene85401:intron | 55.0% | |
GTCCTAGGCATGAGGAAAGC+GGG | - | chr6.4:49258186-49258205 | None:intergenic | 55.0% | |
TGCGATGTCACCGGCAAATG+TGG | + | chr6.4:49260613-49260632 | MS.gene85401:intron | 55.0% | |
TTAACCACCCCTCGACACGA+AGG | + | chr6.4:49260177-49260196 | MS.gene85401:CDS | 55.0% | |
TTACTTCCGTGGCCGCTTCA+AGG | - | chr6.4:49259210-49259229 | None:intergenic | 55.0% | |
!! | ACTGACTCGAGATGTGAGGG+TGG | + | chr6.4:49258316-49258335 | MS.gene85401:intron | 55.0% |
CAGAAGCCTTGAAGCGGCCA+CGG | + | chr6.4:49259201-49259220 | MS.gene85401:CDS | 60.0% | |
TGAACGGAGCAGCGCGCATT+TGG | + | chr6.4:49260305-49260324 | MS.gene85401:CDS | 60.0% | |
TGGTTCGTCCCAGACCAGAC+TGG | + | chr6.4:49259600-49259619 | MS.gene85401:intron | 60.0% | |
ACCTCGAGGCCTTCGTGTCG+AGG | - | chr6.4:49260189-49260208 | None:intergenic | 65.0% | |
CCTCGAGGCCTTCGTGTCGA+GGG | - | chr6.4:49260188-49260207 | None:intergenic | 65.0% | |
CTCGAGGCCTTCGTGTCGAG+GGG | - | chr6.4:49260187-49260206 | None:intergenic | 65.0% | |
GCATCACGTGCTGCAGGGTC+AGG | - | chr6.4:49259151-49259170 | None:intergenic | 65.0% | |
CCCTCGACACGAAGGCCTCG+AGG | + | chr6.4:49260185-49260204 | MS.gene85401:CDS | 70.0% | |
GAGGCCTTCGTGTCGAGGGG+TGG | - | chr6.4:49260184-49260203 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6.4 | gene | 49257290 | 49261002 | 49257290 | ID=MS.gene85401 |
chr6.4 | mRNA | 49257290 | 49261002 | 49257290 | ID=MS.gene85401.t1;Parent=MS.gene85401 |
chr6.4 | exon | 49257290 | 49257365 | 49257290 | ID=MS.gene85401.t1.exon1;Parent=MS.gene85401.t1 |
chr6.4 | CDS | 49257290 | 49257365 | 49257290 | ID=cds.MS.gene85401.t1;Parent=MS.gene85401.t1 |
chr6.4 | exon | 49258793 | 49258938 | 49258793 | ID=MS.gene85401.t1.exon2;Parent=MS.gene85401.t1 |
chr6.4 | CDS | 49258793 | 49258938 | 49258793 | ID=cds.MS.gene85401.t1;Parent=MS.gene85401.t1 |
chr6.4 | exon | 49259127 | 49259342 | 49259127 | ID=MS.gene85401.t1.exon3;Parent=MS.gene85401.t1 |
chr6.4 | CDS | 49259127 | 49259342 | 49259127 | ID=cds.MS.gene85401.t1;Parent=MS.gene85401.t1 |
chr6.4 | exon | 49260162 | 49260377 | 49260162 | ID=MS.gene85401.t1.exon4;Parent=MS.gene85401.t1 |
chr6.4 | CDS | 49260162 | 49260377 | 49260162 | ID=cds.MS.gene85401.t1;Parent=MS.gene85401.t1 |
chr6.4 | exon | 49260455 | 49260544 | 49260455 | ID=MS.gene85401.t1.exon5;Parent=MS.gene85401.t1 |
chr6.4 | CDS | 49260455 | 49260544 | 49260455 | ID=cds.MS.gene85401.t1;Parent=MS.gene85401.t1 |
chr6.4 | exon | 49260799 | 49261002 | 49260799 | ID=MS.gene85401.t1.exon6;Parent=MS.gene85401.t1 |
chr6.4 | CDS | 49260799 | 49261002 | 49260799 | ID=cds.MS.gene85401.t1;Parent=MS.gene85401.t1 |
Gene Sequence |
Protein sequence |