AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene85401


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene85401.t1 MTR_6g071595 98.730 315 4 0 1 315 1 315 0.0 646
MS.gene85401.t1 MTR_1g112520 88.254 315 37 0 1 315 1 315 0.0 563
MS.gene85401.t1 MTR_6g071615 87.302 315 40 0 1 315 1 315 0.0 559
MS.gene85401.t1 MTR_6g071605 83.492 315 52 0 1 315 1 315 0.0 553
MS.gene85401.t1 MTR_8g107640 77.070 314 72 0 1 314 1 314 0.0 520
MS.gene85401.t1 MTR_6g071595 98.400 250 4 0 1 250 1 250 0.0 511
MS.gene85401.t1 MTR_1g033560 60.063 318 121 3 1 315 1 315 5.01e-137 390
MS.gene85401.t1 MTR_8g038150 38.170 317 189 3 1 312 1 315 1.28e-69 219
MS.gene85401.t1 MTR_8g038180 37.025 316 196 3 1 315 1 314 2.95e-66 210
MS.gene85401.t1 MTR_8g038220 37.261 314 192 4 1 312 1 311 1.91e-64 206
MS.gene85401.t1 MTR_8g038220 36.624 314 193 4 1 312 1 310 4.52e-63 202
MS.gene85401.t1 MTR_5g063670 35.759 316 199 4 1 314 1 314 7.74e-63 202
MS.gene85401.t1 MTR_3g018780 35.238 315 201 3 1 314 1 313 1.60e-62 201
MS.gene85401.t1 MTR_3g018790 36.422 313 196 3 1 312 1 311 1.32e-60 196
MS.gene85401.t1 MTR_0276s0050 36.076 316 194 4 1 312 1 312 6.98e-60 194
MS.gene85401.t1 MTR_2g031980 34.824 313 201 3 1 312 1 311 2.55e-58 190
MS.gene85401.t1 MTR_8g038210 35.256 312 200 2 1 312 1 310 3.20e-58 190
MS.gene85401.t1 MTR_8g038210 34.295 312 203 2 1 312 1 310 1.91e-56 185
MS.gene85401.t1 MTR_6g028030 33.453 278 169 7 45 310 34 307 1.18e-38 139
MS.gene85401.t1 MTR_3g018790 31.950 241 162 2 74 313 19 258 2.30e-36 131
MS.gene85401.t1 MTR_8g038170 29.412 306 193 6 23 312 13 311 4.43e-35 129
MS.gene85401.t1 MTR_8g038170 29.412 306 193 6 23 312 13 311 4.43e-35 129
MS.gene85401.t1 MTR_3g018920 31.604 212 112 3 1 212 1 179 1.61e-25 100
MS.gene85401.t1 MTR_3g018925 42.391 92 53 0 222 313 16 107 8.07e-16 72.8
MS.gene85401.t1 MTR_8g038090 41.772 79 44 2 236 312 12 90 2.60e-12 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene85401.t1 AT1G68090 53.943 317 141 2 1 314 1 315 2.45e-123 356
MS.gene85401.t1 AT1G68090 51.190 252 118 2 1 249 1 250 4.11e-88 264
MS.gene85401.t1 AT1G68090 25.352 213 138 5 108 311 37 237 6.31e-13 67.8
MS.gene85401.t1 AT5G10230 38.608 316 192 2 1 315 1 315 2.06e-75 234
MS.gene85401.t1 AT5G10220 38.050 318 193 3 1 315 1 317 4.44e-74 231
MS.gene85401.t1 AT5G65020 39.683 315 185 4 1 312 1 313 5.17e-74 231
MS.gene85401.t1 AT1G35720 37.658 316 194 3 1 314 1 315 7.60e-67 212
MS.gene85401.t1 AT5G65020 38.621 290 173 4 26 312 11 298 4.44e-64 204
MS.gene85401.t1 AT5G12380 35.016 317 195 5 1 312 1 311 2.89e-61 197
MS.gene85401.t1 AT2G38760 33.125 320 204 5 1 312 1 318 2.02e-51 172
MS.gene85401.t1 AT2G38750 30.449 312 190 8 22 314 15 318 5.11e-33 124
MS.gene85401.t1 AT2G38750 30.195 308 188 8 26 314 2 301 1.79e-32 122

Find 66 sgRNAs with CRISPR-Local

Find 207 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTCCGTTCACTGAATATT+TGG 0.211500 6.4:-49260293 None:intergenic
TATAAGGCAATGAAAGGTTT+AGG 0.249516 6.4:+49260805 MS.gene85401:CDS
CTCGATGCAGGTGTTGTATA+AGG 0.335847 6.4:+49260789 MS.gene85401:intron
ACCTTTGCAAAATACTTTGC+TGG 0.342116 6.4:-49260524 None:intergenic
AATGAAGCATCCGGGAATTT+CGG 0.345214 6.4:+49260464 MS.gene85401:CDS
CAGTTATACCATTCAAAGTT+TGG 0.348370 6.4:+49259268 MS.gene85401:CDS
CAAAGCTGGGGAGAAGAAAC+TGG 0.361804 6.4:+49260248 MS.gene85401:CDS
TTACTTCCGTGGCCGCTTCA+AGG 0.381428 6.4:-49259207 None:intergenic
ATAAGGCAATGAAAGGTTTA+GGG 0.382653 6.4:+49260806 MS.gene85401:CDS
TGAACGGAGCAGCGCGCATT+TGG 0.389281 6.4:+49260305 MS.gene85401:CDS
TCTCTAGGAGAAGGAGGAAT+TGG 0.392592 6.4:-49257311 None:intergenic
ATGTTGCTTTGTATTCTTGT+TGG 0.414709 6.4:-49258863 None:intergenic
GCATCACGTGCTGCAGGGTC+AGG 0.420816 6.4:-49259148 None:intergenic
GAAATCGAATTAAACACTTC+CGG 0.423423 6.4:+49259307 MS.gene85401:CDS
GGAGCTGAAAGGAAAATTAG+AGG 0.424898 6.4:+49258917 MS.gene85401:CDS
AACATCTTTGACTAGTGATT+CGG 0.425606 6.4:-49260991 None:intergenic
AAGTGCGAGACCGAAATTCC+CGG 0.431810 6.4:-49260474 None:intergenic
TAATAGAGAAATTGCTCAAA+AGG 0.435118 6.4:+49260209 MS.gene85401:CDS
ATTTCTGCATCACGTGCTGC+AGG 0.436134 6.4:-49259154 None:intergenic
ATCAGACTGCAGTTCTACTT+TGG 0.440143 6.4:+49259122 MS.gene85401:intron
CTAATGATAGCACACTCATA+AGG 0.441949 6.4:+49260830 MS.gene85401:CDS
CATTAGGAAGTCGCTGGTTG+TGG 0.443829 6.4:+49259177 MS.gene85401:CDS
GATAAACGCCAAACTTTGAA+TGG 0.462297 6.4:-49259276 None:intergenic
GCAAAGGTTCTGTACAAAGC+TGG 0.473173 6.4:+49260234 MS.gene85401:CDS
CACGTGATGCAGAAATCATT+AGG 0.480060 6.4:+49259161 MS.gene85401:CDS
GCAGTAAAGAATGAAGCATC+CGG 0.483236 6.4:+49260455 MS.gene85401:CDS
TCGTATTATCATGACATGTA+TGG 0.483429 6.4:+49260339 MS.gene85401:CDS
CTGAAACATCAGGCAACTAC+AGG 0.485303 6.4:+49260944 MS.gene85401:CDS
CAAAGGTTCTGTACAAAGCT+GGG 0.486209 6.4:+49260235 MS.gene85401:CDS
TTTAGATATTGTAGTTGGGA+TGG 0.486564 6.4:-49259244 None:intergenic
CAGAAGCCTTGAAGCGGCCA+CGG 0.489696 6.4:+49259201 MS.gene85401:CDS
CCTCGAGGCCTTCGTGTCGA+GGG 0.494196 6.4:-49260185 None:intergenic
ACCTCGAGGCCTTCGTGTCG+AGG 0.495564 6.4:-49260186 None:intergenic
TTTGTATTCTTGTTGGAGGT+AGG 0.504801 6.4:-49258856 None:intergenic
GCTATCGAAACGCTTAGTTT+CGG 0.507005 6.4:+49258896 MS.gene85401:CDS
TTGCTTTGTATTCTTGTTGG+AGG 0.507782 6.4:-49258860 None:intergenic
TAATGATAGCACACTCATAA+GGG 0.514286 6.4:+49260831 MS.gene85401:CDS
GCAGTTCACTCTGAAACATC+AGG 0.517462 6.4:+49260934 MS.gene85401:CDS
CTAGGAGAAGGAGGAATTGG+AGG 0.521648 6.4:-49257308 None:intergenic
AGTTGCATGGCATCATCTCT+AGG 0.543315 6.4:-49257326 None:intergenic
AAAAGCACTGTAAAGTTGCA+TGG 0.543793 6.4:-49257339 None:intergenic
CGCTTAGTTTCGGAGCTGAA+AGG 0.547329 6.4:+49258906 MS.gene85401:CDS
AACTTGTCAAGATCTTGCTT+AGG 0.548123 6.4:+49260151 MS.gene85401:intron
CACTTCCGGAGATCATCAAA+AGG 0.568952 6.4:+49259321 MS.gene85401:CDS
CTCGAGGCCTTCGTGTCGAG+GGG 0.578942 6.4:-49260184 None:intergenic
AATTGCTCAAAAGGATGCAA+AGG 0.581121 6.4:+49260218 MS.gene85401:CDS
GAGGCCTTCGTGTCGAGGGG+TGG 0.584779 6.4:-49260181 None:intergenic
TTGTCCAAATATTCAGTGAA+CGG 0.584875 6.4:+49260289 MS.gene85401:CDS
GTATGGTCACTCATTGAAGA+AGG 0.585411 6.4:+49260356 MS.gene85401:CDS
GTGTTGTATAAGGCAATGAA+AGG 0.599181 6.4:+49260799 MS.gene85401:CDS
AGAAATCATTAGGAAGTCGC+TGG 0.602316 6.4:+49259171 MS.gene85401:CDS
CAGTAAAGAATGAAGCATCC+GGG 0.603685 6.4:+49260456 MS.gene85401:CDS
TGTGGACAGAAGCCTTGAAG+CGG 0.613077 6.4:+49259195 MS.gene85401:CDS
ATGGCATCATCTCTAGGAGA+AGG 0.615001 6.4:-49257320 None:intergenic
ATACAAAGCAACATATTCTG+AGG 0.622438 6.4:+49258872 MS.gene85401:CDS
GTCATGATAATACGAACTGA+CGG 0.635703 6.4:-49260331 None:intergenic
TTTCTGCATCACGTGCTGCA+GGG 0.638169 6.4:-49259153 None:intergenic
ACGCGAACATATTACTTCCG+TGG 0.638767 6.4:-49259218 None:intergenic
GCATCATCTCTAGGAGAAGG+AGG 0.640486 6.4:-49257317 None:intergenic
CCCTCGACACGAAGGCCTCG+AGG 0.644373 6.4:+49260185 MS.gene85401:CDS
AAAGGTTCTGTACAAAGCTG+GGG 0.669384 6.4:+49260236 MS.gene85401:CDS
CAATTTCTCTATTAACCTCG+AGG 0.673114 6.4:-49260200 None:intergenic
TGAAACATCAGGCAACTACA+GGG 0.675131 6.4:+49260945 MS.gene85401:CDS
AAAGCTGGGGAGAAGAAACT+GGG 0.680899 6.4:+49260249 MS.gene85401:CDS
TCATAAGGGTCATTGTAACA+AGG 0.683484 6.4:+49260845 MS.gene85401:CDS
TTAACCACCCCTCGACACGA+AGG 0.686957 6.4:+49260177 MS.gene85401:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAGACATAAAATACTTATT+AGG - chr6.4:49258646-49258665 None:intergenic 15.0%
!!! ATTGAAAGAAGAATTATTTT+TGG + chr6.4:49257576-49257595 MS.gene85401:intron 15.0%
!!! ATTTCAAGTTAATAAAACAA+AGG + chr6.4:49260091-49260110 MS.gene85401:intron 15.0%
!!! ATTTCAATTTTGTAATGATT+TGG - chr6.4:49258382-49258401 None:intergenic 15.0%
!!! CCAATTTTATGAAAATAATT+AGG - chr6.4:49258120-49258139 None:intergenic 15.0%
!!! CCTAATTATTTTCATAAAAT+TGG + chr6.4:49258117-49258136 MS.gene85401:intron 15.0%
!!! GATTTTTTGTAAAATAGTTT+TGG - chr6.4:49259667-49259686 None:intergenic 15.0%
!!! TAAAATTTTAGACGTTTAAA+AGG - chr6.4:49260737-49260756 None:intergenic 15.0%
!!! TTTCAATTTTGTAATGATTT+GGG - chr6.4:49258381-49258400 None:intergenic 15.0%
!! AAATTGCTATAATTAACTGA+TGG + chr6.4:49259738-49259757 MS.gene85401:intron 20.0%
!! ATCAGTTAATTATAGCAATT+TGG - chr6.4:49259739-49259758 None:intergenic 20.0%
!! GTCAATATTCATAAATCATA+AGG - chr6.4:49257429-49257448 None:intergenic 20.0%
!! TATTAGGACTGTTTAAAAAA+CGG + chr6.4:49259804-49259823 MS.gene85401:intron 20.0%
!! TATTATTGGCATAAGAATTA+TGG - chr6.4:49259914-49259933 None:intergenic 20.0%
!! TCATAAAATTGGATTGTAAA+GGG + chr6.4:49258128-49258147 MS.gene85401:intron 20.0%
!! TTCATAAAATTGGATTGTAA+AGG + chr6.4:49258127-49258146 MS.gene85401:intron 20.0%
!! TTCTAGATTCAAAATGTTAA+AGG + chr6.4:49259975-49259994 MS.gene85401:intron 20.0%
!!! ACTGATATGTTACATTATTT+TGG + chr6.4:49259555-49259574 MS.gene85401:intron 20.0%
!!! AGTAAAAGAAAGAATTTTAG+AGG - chr6.4:49257903-49257922 None:intergenic 20.0%
!!! ATAATCAATTTTACACATCT+AGG - chr6.4:49257502-49257521 None:intergenic 20.0%
!!! ATAATTGATTCTGATATGTT+TGG + chr6.4:49257637-49257656 MS.gene85401:intron 20.0%
!!! TACATCTCTAAAATCAATTT+TGG - chr6.4:49257618-49257637 None:intergenic 20.0%
!!! TTTCAAGTTAAATTCATATC+AGG + chr6.4:49260433-49260452 MS.gene85401:intron 20.0%
! AACTAAAAGTGAGTTATGTT+TGG - chr6.4:49257789-49257808 None:intergenic 25.0%
! ACTTAAAAGTCCTTATCTAA+AGG - chr6.4:49259944-49259963 None:intergenic 25.0%
! ACTTAGAAACATTATCATGA+AGG - chr6.4:49260069-49260088 None:intergenic 25.0%
! ATCTTAGGTATGAAAAACTT+TGG + chr6.4:49259450-49259469 MS.gene85401:intron 25.0%
! CTATAATTAACTGATGGTTA+AGG + chr6.4:49259744-49259763 MS.gene85401:intron 25.0%
! CTTTCATAAACACTGTTTAA+AGG - chr6.4:49258054-49258073 None:intergenic 25.0%
! GACATAAAATACTTATTAGG+AGG - chr6.4:49258643-49258662 None:intergenic 25.0%
! TAATAGAGAAATTGCTCAAA+AGG + chr6.4:49260209-49260228 MS.gene85401:CDS 25.0%
!! CATAGACAGTATAATTTTCT+CGG + chr6.4:49258410-49258429 MS.gene85401:intron 25.0%
!! TCTTGTATTATGCATAGTTT+TGG + chr6.4:49258081-49258100 MS.gene85401:intron 25.0%
!!! AACTTGTTTTAGTGTATGTT+TGG + chr6.4:49257473-49257492 MS.gene85401:intron 25.0%
!!! AATTGTTTTATGATCCCTAT+AGG - chr6.4:49259401-49259420 None:intergenic 25.0%
!!! ACTGTTTTAGATATTGTAGT+TGG - chr6.4:49259252-49259271 None:intergenic 25.0%
!!! ATTATGCATAGTTTTGGAAT+TGG + chr6.4:49258087-49258106 MS.gene85401:intron 25.0%
!!! ATTGTTTTATGATCCCTATA+GGG - chr6.4:49259400-49259419 None:intergenic 25.0%
!!! CAGTTTTGTTAGATTATGTT+TGG - chr6.4:49258300-49258319 None:intergenic 25.0%
!!! CTGTTTTAGATATTGTAGTT+GGG - chr6.4:49259251-49259270 None:intergenic 25.0%
!!! GACAAGTTTTTTACATAAAG+CGG - chr6.4:49260139-49260158 None:intergenic 25.0%
!!! GATTTTGACTAAAATTGAGT+TGG - chr6.4:49257988-49258007 None:intergenic 25.0%
AAAAAAAGGTTCCATTTGCA+CGG - chr6.4:49258746-49258765 None:intergenic 30.0%
AAACTGAACCGAATTGTTTA+TGG + chr6.4:49259580-49259599 MS.gene85401:intron 30.0%
AACAGTCCTAATATTTGAGT+TGG - chr6.4:49259797-49259816 None:intergenic 30.0%
AACTTCATGCTCAACATAAA+CGG - chr6.4:49259368-49259387 None:intergenic 30.0%
AAGTTACTGAACACTAACTA+CGG - chr6.4:49257458-49257477 None:intergenic 30.0%
AAGTTGAATGAAATCCCTAT+AGG + chr6.4:49259383-49259402 MS.gene85401:intron 30.0%
AATCAATTCTTGTGTGTGTT+TGG - chr6.4:49257865-49257884 None:intergenic 30.0%
ACTGATCCAACTCAAATATT+AGG + chr6.4:49259788-49259807 MS.gene85401:intron 30.0%
AGACTAACTAACTAACTAAC+TGG + chr6.4:49258604-49258623 MS.gene85401:intron 30.0%
AGTTGAATGAAATCCCTATA+GGG + chr6.4:49259384-49259403 MS.gene85401:intron 30.0%
ATAAGGCAATGAAAGGTTTA+GGG + chr6.4:49260806-49260825 MS.gene85401:CDS 30.0%
ATACAAAGCAACATATTCTG+AGG + chr6.4:49258872-49258891 MS.gene85401:CDS 30.0%
ATCACAAATTAGTCACGTTA+AGG + chr6.4:49259480-49259499 MS.gene85401:intron 30.0%
CAACTCTGACATGTAAATAT+CGG - chr6.4:49260674-49260693 None:intergenic 30.0%
CAGTTATACCATTCAAAGTT+TGG + chr6.4:49259268-49259287 MS.gene85401:CDS 30.0%
CGTTCAATTCAATGTTATGA+TGG - chr6.4:49258992-49259011 None:intergenic 30.0%
GAAATCGAATTAAACACTTC+CGG + chr6.4:49259307-49259326 MS.gene85401:CDS 30.0%
GAACTATGAACAATCCTAAA+AGG - chr6.4:49259511-49259530 None:intergenic 30.0%
GAATCAGGATGGAAAAAAAA+AGG - chr6.4:49258760-49258779 None:intergenic 30.0%
GAGTTTATCATAGACTATTG+CGG - chr6.4:49258251-49258270 None:intergenic 30.0%
GTAAGAGAGTAAAACTTGAA+TGG + chr6.4:49258515-49258534 MS.gene85401:intron 30.0%
GTTAAATCTCAGTTACAGTA+CGG + chr6.4:49259835-49259854 MS.gene85401:intron 30.0%
TAAAATTGGATTGTAAAGGG+TGG + chr6.4:49258131-49258150 MS.gene85401:intron 30.0%
TAACATAATCAGCACAAGTT+AGG - chr6.4:49257384-49257403 None:intergenic 30.0%
TAATGATAGCACACTCATAA+GGG + chr6.4:49260831-49260850 MS.gene85401:CDS 30.0%
TACCATATTATGACGAACTA+GGG + chr6.4:49258471-49258490 MS.gene85401:intron 30.0%
TATAAGGCAATGAAAGGTTT+AGG + chr6.4:49260805-49260824 MS.gene85401:CDS 30.0%
TCACAAATTAGTCACGTTAA+GGG + chr6.4:49259481-49259500 MS.gene85401:intron 30.0%
TCATCTTCACTTCAACTTTA+GGG + chr6.4:49260553-49260572 MS.gene85401:intron 30.0%
TCGTATTATCATGACATGTA+TGG + chr6.4:49260339-49260358 MS.gene85401:CDS 30.0%
TGTAACATATCAGTTCGATT+TGG - chr6.4:49259549-49259568 None:intergenic 30.0%
TTACCATATTATGACGAACT+AGG + chr6.4:49258470-49258489 MS.gene85401:intron 30.0%
TTCATCTTCACTTCAACTTT+AGG + chr6.4:49260552-49260571 MS.gene85401:intron 30.0%
TTGAATATAACCACATTTGC+CGG - chr6.4:49260626-49260645 None:intergenic 30.0%
TTGTCCAAATATTCAGTGAA+CGG + chr6.4:49260289-49260308 MS.gene85401:CDS 30.0%
TTTAGATATTGTAGTTGGGA+TGG - chr6.4:49259247-49259266 None:intergenic 30.0%
! ACACTGTTTAAAGGCTATTT+TGG - chr6.4:49258045-49258064 None:intergenic 30.0%
! CAACTTTACAGTGCTTTTAA+AGG + chr6.4:49257344-49257363 MS.gene85401:CDS 30.0%
! TTGGACAAATGTCTTTTCAT+CGG - chr6.4:49260277-49260296 None:intergenic 30.0%
!! ATGTTGCTTTGTATTCTTGT+TGG - chr6.4:49258866-49258885 None:intergenic 30.0%
!! ATTTGAGTTGGATCAGTATT+TGG - chr6.4:49259785-49259804 None:intergenic 30.0%
!! TCTATGGTTTTACAGGATTT+GGG + chr6.4:49258778-49258797 MS.gene85401:intron 30.0%
!! TTCTATGGTTTTACAGGATT+TGG + chr6.4:49258777-49258796 MS.gene85401:intron 30.0%
!!! ATTTTTGGTTTCACTTCTAG+AGG + chr6.4:49257591-49257610 MS.gene85401:intron 30.0%
!!! TTTTTGGTTTCACTTCTAGA+GGG + chr6.4:49257592-49257611 MS.gene85401:intron 30.0%
!!! TTTTTTCCATCCTGATTCTA+TGG + chr6.4:49258762-49258781 MS.gene85401:intron 30.0%
AAAACTGTCTCATGATTCCA+TGG + chr6.4:49260040-49260059 MS.gene85401:intron 35.0%
AACTAGGGGAAAATGTAGTT+TGG + chr6.4:49258486-49258505 MS.gene85401:intron 35.0%
AACTTGTCAAGATCTTGCTT+AGG + chr6.4:49260151-49260170 MS.gene85401:intron 35.0%
AATTGCTCAAAAGGATGCAA+AGG + chr6.4:49260218-49260237 MS.gene85401:CDS 35.0%
ACCATATTATGACGAACTAG+GGG + chr6.4:49258472-49258491 MS.gene85401:intron 35.0%
ACCTTTGCAAAATACTTTGC+TGG - chr6.4:49260527-49260546 None:intergenic 35.0%
AGTGTCGTGTTTCATAGATT+AGG + chr6.4:49260699-49260718 MS.gene85401:intron 35.0%
ATAGTGCATGCCTTTAGATA+AGG + chr6.4:49259931-49259950 MS.gene85401:intron 35.0%
CAATTTCTCTATTAACCTCG+AGG - chr6.4:49260203-49260222 None:intergenic 35.0%
CACAAGTTAGGAGAGAAATA+AGG - chr6.4:49257372-49257391 None:intergenic 35.0%
CTAATGATAGCACACTCATA+AGG + chr6.4:49260830-49260849 MS.gene85401:CDS 35.0%
CTATGAACAATCCTAAAAGG+AGG - chr6.4:49259508-49259527 None:intergenic 35.0%
GATAAACGCCAAACTTTGAA+TGG - chr6.4:49259279-49259298 None:intergenic 35.0%
GATTGTTCATAGTTCGATTC+AGG + chr6.4:49259516-49259535 MS.gene85401:intron 35.0%
GGATATATAGAGCATGACTT+AGG + chr6.4:49258207-49258226 MS.gene85401:intron 35.0%
GTAAAACCATAGAATCAGGA+TGG - chr6.4:49258771-49258790 None:intergenic 35.0%
GTAATGATATTCCGTGCAAA+TGG + chr6.4:49258732-49258751 MS.gene85401:intron 35.0%
GTCATGATAATACGAACTGA+CGG - chr6.4:49260334-49260353 None:intergenic 35.0%
GTGTTGTATAAGGCAATGAA+AGG + chr6.4:49260799-49260818 MS.gene85401:CDS 35.0%
GTTATGCGGTTATAAAGTGA+GGG - chr6.4:49258343-49258362 None:intergenic 35.0%
TATATAGAGCATGACTTAGG+TGG + chr6.4:49258210-49258229 MS.gene85401:intron 35.0%
TCATAAGGGTCATTGTAACA+AGG + chr6.4:49260845-49260864 MS.gene85401:CDS 35.0%
TCCTGTAAAACCATAGAATC+AGG - chr6.4:49258775-49258794 None:intergenic 35.0%
TGTACTTGTGTGTGAATCTT+AGG + chr6.4:49259435-49259454 MS.gene85401:intron 35.0%
TTATGCGGTTATAAAGTGAG+GGG - chr6.4:49258342-49258361 None:intergenic 35.0%
TTGCTTTGTATTCTTGTTGG+AGG - chr6.4:49258863-49258882 None:intergenic 35.0%
TTTGTATTCTTGTTGGAGGT+AGG - chr6.4:49258859-49258878 None:intergenic 35.0%
! CACACAAGAATTGATTCTTC+AGG + chr6.4:49257869-49257888 MS.gene85401:intron 35.0%
! CTAAAGGCATGCACTATTAT+TGG - chr6.4:49259928-49259947 None:intergenic 35.0%
! CTTGAATTACTAGCTTCAAG+TGG - chr6.4:49257705-49257724 None:intergenic 35.0%
! GATTTTCTTCTCGCACTTTT+GGG + chr6.4:49260967-49260986 MS.gene85401:CDS 35.0%
!! AAAAGCACTGTAAAGTTGCA+TGG - chr6.4:49257342-49257361 None:intergenic 35.0%
!! TAGGGAAAGTACTTCCTTTA+GGG + chr6.4:49260571-49260590 MS.gene85401:intron 35.0%
!! TCCAGCAAAGTATTTTGCAA+AGG + chr6.4:49260523-49260542 MS.gene85401:CDS 35.0%
!! TCCTGATTCTATGGTTTTAC+AGG + chr6.4:49258771-49258790 MS.gene85401:intron 35.0%
!! TTAGGGAAAGTACTTCCTTT+AGG + chr6.4:49260570-49260589 MS.gene85401:intron 35.0%
AAAGGTTCTGTACAAAGCTG+GGG + chr6.4:49260236-49260255 MS.gene85401:CDS 40.0%
AAGTGGAATCTCGATTCTTG+AGG - chr6.4:49257688-49257707 None:intergenic 40.0%
ACCAGACTGGTATAAAGCTT+AGG + chr6.4:49259613-49259632 MS.gene85401:intron 40.0%
AGAAATCATTAGGAAGTCGC+TGG + chr6.4:49259171-49259190 MS.gene85401:CDS 40.0%
ATCAGACTGCAGTTCTACTT+TGG + chr6.4:49259122-49259141 MS.gene85401:intron 40.0%
ATTTGGGTATAGCTGAACAG+CGG - chr6.4:49258365-49258384 None:intergenic 40.0%
CAAAGGTTCTGTACAAAGCT+GGG + chr6.4:49260235-49260254 MS.gene85401:CDS 40.0%
CAAGGAACAGCTAGAAACTA+TGG - chr6.4:49260011-49260030 None:intergenic 40.0%
CACGTGATGCAGAAATCATT+AGG + chr6.4:49259161-49259180 MS.gene85401:CDS 40.0%
CATTATCATGAAGGCAACCA+TGG - chr6.4:49260060-49260079 None:intergenic 40.0%
GCTATCGAAACGCTTAGTTT+CGG + chr6.4:49258896-49258915 MS.gene85401:CDS 40.0%
GGAGCTGAAAGGAAAATTAG+AGG + chr6.4:49258917-49258936 MS.gene85401:CDS 40.0%
GGGACGAACCATAAACAATT+CGG - chr6.4:49259591-49259610 None:intergenic 40.0%
GGTATAAAGCTTAGGTGCAT+TGG + chr6.4:49259621-49259640 MS.gene85401:intron 40.0%
GGTTATGCGGTTATAAAGTG+AGG - chr6.4:49258344-49258363 None:intergenic 40.0%
GTATGGTCACTCATTGAAGA+AGG + chr6.4:49260356-49260375 MS.gene85401:CDS 40.0%
GTTCATAGTTCGATTCAGGA+AGG + chr6.4:49259520-49259539 MS.gene85401:intron 40.0%
TCCCCTAGTTCGTCATAATA+TGG - chr6.4:49258476-49258495 None:intergenic 40.0%
TGAAACATCAGGCAACTACA+GGG + chr6.4:49260945-49260964 MS.gene85401:CDS 40.0%
TGCTCCGTTCACTGAATATT+TGG - chr6.4:49260296-49260315 None:intergenic 40.0%
TGCTCTATATATCCAGTCCT+AGG - chr6.4:49258201-49258220 None:intergenic 40.0%
! AATGAAGCATCCGGGAATTT+CGG + chr6.4:49260464-49260483 MS.gene85401:CDS 40.0%
! ACCTAAGCTTTATACCAGTC+TGG - chr6.4:49259617-49259636 None:intergenic 40.0%
! CAGTAAAGAATGAAGCATCC+GGG + chr6.4:49260456-49260475 MS.gene85401:CDS 40.0%
! GCAGTAAAGAATGAAGCATC+CGG + chr6.4:49260455-49260474 MS.gene85401:CDS 40.0%
! GGATTTTCTTCTCGCACTTT+TGG + chr6.4:49260966-49260985 MS.gene85401:CDS 40.0%
! TTTTTCGTAGCGGTTCAGTT+TGG + chr6.4:49259859-49259878 MS.gene85401:intron 40.0%
!! AAAACTGACTCGAGATGTGA+GGG + chr6.4:49258313-49258332 MS.gene85401:intron 40.0%
!! AGGGAAAGTACTTCCTTTAG+GGG + chr6.4:49260572-49260591 MS.gene85401:intron 40.0%
!! AGTTTCTAGCTGTTCCTTGT+TGG + chr6.4:49260012-49260031 MS.gene85401:intron 40.0%
!! GTTTCTAGCTGTTCCTTGTT+GGG + chr6.4:49260013-49260032 MS.gene85401:intron 40.0%
!!! ACAGTACGGTTTTTTCGTAG+CGG + chr6.4:49259849-49259868 MS.gene85401:intron 40.0%
AAAGCTGGGGAGAAGAAACT+GGG + chr6.4:49260249-49260268 MS.gene85401:CDS 45.0%
ACGCGAACATATTACTTCCG+TGG - chr6.4:49259221-49259240 None:intergenic 45.0%
AGTTGCATGGCATCATCTCT+AGG - chr6.4:49257329-49257348 None:intergenic 45.0%
ATAGCTGAACAGCGGTTATG+CGG - chr6.4:49258357-49258376 None:intergenic 45.0%
CACTTCCGGAGATCATCAAA+AGG + chr6.4:49259321-49259340 MS.gene85401:CDS 45.0%
CTGAAACATCAGGCAACTAC+AGG + chr6.4:49260944-49260963 MS.gene85401:CDS 45.0%
CTTATACAACACCTGCATCG+AGG - chr6.4:49260791-49260810 None:intergenic 45.0%
GCAAAGGTTCTGTACAAAGC+TGG + chr6.4:49260234-49260253 MS.gene85401:CDS 45.0%
GCTTTATACCAGTCTGGTCT+GGG - chr6.4:49259611-49259630 None:intergenic 45.0%
TATATCCAGTCCTAGGCATG+AGG - chr6.4:49258194-49258213 None:intergenic 45.0%
TTCATAGCATGCGATGTCAC+CGG + chr6.4:49260604-49260623 MS.gene85401:intron 45.0%
! ACGTTAAGGGTCCTCCTTTT+AGG + chr6.4:49259494-49259513 MS.gene85401:intron 45.0%
! AGCTTTATACCAGTCTGGTC+TGG - chr6.4:49259612-49259631 None:intergenic 45.0%
! ATGGCATCATCTCTAGGAGA+AGG - chr6.4:49257323-49257342 None:intergenic 45.0%
! CTCGATGCAGGTGTTGTATA+AGG + chr6.4:49260789-49260808 MS.gene85401:intron 45.0%
! TCTCTAGGAGAAGGAGGAAT+TGG - chr6.4:49257314-49257333 None:intergenic 45.0%
!! CAAAACTGACTCGAGATGTG+AGG + chr6.4:49258312-49258331 MS.gene85401:intron 45.0%
!! CCTCACCTTTTGATGATCTC+CGG - chr6.4:49259329-49259348 None:intergenic 45.0%
!! GAGGAAAGCGGGTTGAATAA+TGG - chr6.4:49258175-49258194 None:intergenic 45.0%
!! GCAGTTCACTCTGAAACATC+AGG + chr6.4:49260934-49260953 MS.gene85401:CDS 45.0%
AAGTGCGAGACCGAAATTCC+CGG - chr6.4:49260477-49260496 None:intergenic 50.0%
AGTCCTAGGCATGAGGAAAG+CGG - chr6.4:49258187-49258206 None:intergenic 50.0%
ATTTCTGCATCACGTGCTGC+AGG - chr6.4:49259157-49259176 None:intergenic 50.0%
CAAAGCTGGGGAGAAGAAAC+TGG + chr6.4:49260248-49260267 MS.gene85401:CDS 50.0%
CCGGAGATCATCAAAAGGTG+AGG + chr6.4:49259326-49259345 MS.gene85401:intron 50.0%
CGCTTAGTTTCGGAGCTGAA+AGG + chr6.4:49258906-49258925 MS.gene85401:CDS 50.0%
CTAGGAGAAGGAGGAATTGG+AGG - chr6.4:49257311-49257330 None:intergenic 50.0%
TGAAGCACAGACACCCCTAA+AGG - chr6.4:49260588-49260607 None:intergenic 50.0%
TGTGGACAGAAGCCTTGAAG+CGG + chr6.4:49259195-49259214 MS.gene85401:CDS 50.0%
TTTCTGCATCACGTGCTGCA+GGG - chr6.4:49259156-49259175 None:intergenic 50.0%
! CATTAGGAAGTCGCTGGTTG+TGG + chr6.4:49259177-49259196 MS.gene85401:CDS 50.0%
! GACAGTTTTTGCGCCCAACA+AGG - chr6.4:49260029-49260048 None:intergenic 50.0%
! GCATCATCTCTAGGAGAAGG+AGG - chr6.4:49257320-49257339 None:intergenic 50.0%
! TCACACTTTTGCCTCGATGC+AGG + chr6.4:49260777-49260796 MS.gene85401:intron 50.0%
!! GCTTAGGTGCATTGGTTCAG+TGG + chr6.4:49259629-49259648 MS.gene85401:intron 50.0%
AACCCGCTTTCCTCATGCCT+AGG + chr6.4:49258181-49258200 MS.gene85401:intron 55.0%
GCTTTCCTCATGCCTAGGAC+TGG + chr6.4:49258186-49258205 MS.gene85401:intron 55.0%
GTCCTAGGCATGAGGAAAGC+GGG - chr6.4:49258186-49258205 None:intergenic 55.0%
TGCGATGTCACCGGCAAATG+TGG + chr6.4:49260613-49260632 MS.gene85401:intron 55.0%
TTAACCACCCCTCGACACGA+AGG + chr6.4:49260177-49260196 MS.gene85401:CDS 55.0%
TTACTTCCGTGGCCGCTTCA+AGG - chr6.4:49259210-49259229 None:intergenic 55.0%
!! ACTGACTCGAGATGTGAGGG+TGG + chr6.4:49258316-49258335 MS.gene85401:intron 55.0%
CAGAAGCCTTGAAGCGGCCA+CGG + chr6.4:49259201-49259220 MS.gene85401:CDS 60.0%
TGAACGGAGCAGCGCGCATT+TGG + chr6.4:49260305-49260324 MS.gene85401:CDS 60.0%
TGGTTCGTCCCAGACCAGAC+TGG + chr6.4:49259600-49259619 MS.gene85401:intron 60.0%
ACCTCGAGGCCTTCGTGTCG+AGG - chr6.4:49260189-49260208 None:intergenic 65.0%
CCTCGAGGCCTTCGTGTCGA+GGG - chr6.4:49260188-49260207 None:intergenic 65.0%
CTCGAGGCCTTCGTGTCGAG+GGG - chr6.4:49260187-49260206 None:intergenic 65.0%
GCATCACGTGCTGCAGGGTC+AGG - chr6.4:49259151-49259170 None:intergenic 65.0%
CCCTCGACACGAAGGCCTCG+AGG + chr6.4:49260185-49260204 MS.gene85401:CDS 70.0%
GAGGCCTTCGTGTCGAGGGG+TGG - chr6.4:49260184-49260203 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr6.4 gene 49257290 49261002 49257290 ID=MS.gene85401
chr6.4 mRNA 49257290 49261002 49257290 ID=MS.gene85401.t1;Parent=MS.gene85401
chr6.4 exon 49257290 49257365 49257290 ID=MS.gene85401.t1.exon1;Parent=MS.gene85401.t1
chr6.4 CDS 49257290 49257365 49257290 ID=cds.MS.gene85401.t1;Parent=MS.gene85401.t1
chr6.4 exon 49258793 49258938 49258793 ID=MS.gene85401.t1.exon2;Parent=MS.gene85401.t1
chr6.4 CDS 49258793 49258938 49258793 ID=cds.MS.gene85401.t1;Parent=MS.gene85401.t1
chr6.4 exon 49259127 49259342 49259127 ID=MS.gene85401.t1.exon3;Parent=MS.gene85401.t1
chr6.4 CDS 49259127 49259342 49259127 ID=cds.MS.gene85401.t1;Parent=MS.gene85401.t1
chr6.4 exon 49260162 49260377 49260162 ID=MS.gene85401.t1.exon4;Parent=MS.gene85401.t1
chr6.4 CDS 49260162 49260377 49260162 ID=cds.MS.gene85401.t1;Parent=MS.gene85401.t1
chr6.4 exon 49260455 49260544 49260455 ID=MS.gene85401.t1.exon5;Parent=MS.gene85401.t1
chr6.4 CDS 49260455 49260544 49260455 ID=cds.MS.gene85401.t1;Parent=MS.gene85401.t1
chr6.4 exon 49260799 49261002 49260799 ID=MS.gene85401.t1.exon6;Parent=MS.gene85401.t1
chr6.4 CDS 49260799 49261002 49260799 ID=cds.MS.gene85401.t1;Parent=MS.gene85401.t1
Gene Sequence

>MS.gene85401

ATGGCTACACTAATTTTACCTCCAATTCCTCCTTCTCCTAGAGATGATGCCATGCAACTTTACAGTGCTTTTAAAGGTACCTTATTTCTCTCCTAACTTGTGCTGATTATGTTACATATATATGCTTTTAATCATACCTTATGATTTATGAATATTGACTTTGTACCGTAGTTAGTGTTCAGTAACTTGTTTTAGTGTATGTTTGGTTTCCTAGATGTGTAAAATTGATTATGATATGTTTGATAGTACACAGAATTGATATGTTTTGCTCTAGAATTGATTATAAATTGAAAGAAGAATTATTTTTGGTTTCACTTCTAGAGGGCCAAAATTGATTTTAGAGATGTATAATTGATTCTGATATGTTTGGTTGCTCTGAAGTATAATTGATTTTGCCTCAAGAATCGAGATTCCACTTGAAGCTAGTAATTCAAGCTTTTGATTCTAGAACTAGAATTGATTTTAACACTCAAATATATTGTTCAACTCAATGTATCCAAACATAACTCACTTTTAGTTAGAATCAATTTTACATGTTAATTCATTCAAAATCAATTTTTGTCAACGCAAAACCAAACACACACAAGAATTGATTCTTCAGGAGTTTTTGCCTCTAAAATTCTTTCTTTTACTCAAATTTATTATTGAACTCAATTTCACGTGAATTTATACAAACATAATAACTTAATTTGCATCCAACTCAATTTTAGTCAAAATCACTTCGATCAAAATCAACTTTTGTTACTGTGAAACCAAAATAGCCTTTAAACAGTGTTTATGAAAGTAATCTTTCTTGTATTATGCATAGTTTTGGAATTGGATTTAAGCCTAATTATTTTCATAAAATTGGATTGTAAAGGGTGGATTGTCACTAGCTTGTGACCATTATTCAACCCGCTTTCCTCATGCCTAGGACTGGATATATAGAGCATGACTTAGGTGGCTCGATGACAAGTAGCCGCAATAGTCTATGATAAACTCTGTATCGTCTTAGAACTTCAGTTTTGCCAAACATAATCTAACAAAACTGACTCGAGATGTGAGGGTGGCCCCTCACTTTATAACCGCATAACCGCTGTTCAGCTATACCCAAATCATTACAAAATTGAAATTATTGCATCATAGACAGTATAATTTTCTCGGAAAATTGAAATATATGAAGCTACTAGATCGACATTTTTTACCATATTATGACGAACTAGGGGAAAATGTAGTTTGGAAATTTGTAAGAGAGTAAAACTTGAATGGTTTCATATTTGATACAAGATAGTAAAATGTGATGCATGATGCTGAATTTATAAAGAGCTCACTGCAAGACTAACTAACTAACTAACTGGAAGAAACTTTTATCCTCCTAATAAGTATTTTATGTCTAATTTCATTTTAGAAAAAAGTGTACTGTGATGTCTGTATGATTCTTTGTATAAAGAGATTACTTATGAGTAATGATATTCCGTGCAAATGGAACCTTTTTTTTTCCATCCTGATTCTATGGTTTTACAGGATTTGGGTGTGACACAACTGCTGTGATCAATATTCTTGCTCATAGAGACGCTACACAGCGTGCCTACCTCCAACAAGAATACAAAGCAACATATTCTGAGGAGCTATCGAAACGCTTAGTTTCGGAGCTGAAAGGAAAATTAGAGGTACTAATTTACTTATATAATAGCTTATAGTAAATGCAAAATCAATCATTCCATCATAACATTGAATTGAACGTTCTTACAATAGTAGATCAAGTTTTCAATAACTTTGAATTGTTTTCTATGAATTTTCTACTTATTGCTTTTCGTGTAATGTTTCATTGTTTATCTTACACTTTTCTATTTATCAGACTGCAGTTCTACTTTGGTTGCCTGACCCTGCAGCACGTGATGCAGAAATCATTAGGAAGTCGCTGGTTGTGGACAGAAGCCTTGAAGCGGCCACGGAAGTAATATGTTCGCGTACTCCATCCCAACTACAATATCTAAAACAGTTATACCATTCAAAGTTTGGCGTTTATCTTGAGCATGAAATCGAATTAAACACTTCCGGAGATCATCAAAAGGTGAGGTTTCTATGTGTAAATGCCGTTTATGTTGAGCATGAAGTTGAATGAAATCCCTATAGGGATCATAAAACAATTGCAGCTTATCTTATTGTACTTGTGTGTGAATCTTAGGTATGAAAAACTTTGGCTATCACATCACAAATTAGTCACGTTAAGGGTCCTCCTTTTAGGATTGTTCATAGTTCGATTCAGGAAGGAAACCAAATCGAACTGATATGTTACATTATTTTGGTAAAACTGAACCGAATTGTTTATGGTTCGTCCCAGACCAGACTGGTATAAAGCTTAGGTGCATTGGTTCAGTGGTTTCGAGCAGTACCAAAACTATTTTACAAAAAATCTCTAACGTAGCTTTTCGAACTGAACTGATTCTTTGTGAAGAAAACTGTACCAAATTGCTATAATTAACTGATGGTTAAGGACTTTCGTGAAAAAACCAAATACTGATCCAACTCAAATATTAGGACTGTTTAAAAAACGGTTCAGATCGTTAAATCTCAGTTACAGTACGGTTTTTTCGTAGCGGTTCAGTTTGGTTCTGTTTATTGTTTTAGAACATTTCAAACCATAATTCTTATGCCAATAATAGTGCATGCCTTTAGATAAGGACTTTTAAGTGTTTATGTCTTTTCTAGATTCAAAATGTTAAAGGTCAAAATTCACCATAGTTTCTAGCTGTTCCTTGTTGGGCGCAAAAACTGTCTCATGATTCCATGGTTGCCTTCATGATAATGTTTCTAAGTTAATTTCAAGTTAATAAAACAAAGGAGCTGCAACAACTGAAGACTAACCGCTTTATGTAAAAAACTTGTCAAGATCTTGCTTAGGTATTTAACCACCCCTCGACACGAAGGCCTCGAGGTTAATAGAGAAATTGCTCAAAAGGATGCAAAGGTTCTGTACAAAGCTGGGGAGAAGAAACTGGGAACCGATGAAAAGACATTTGTCCAAATATTCAGTGAACGGAGCAGCGCGCATTTGGCTGCCGTCAGTTCGTATTATCATGACATGTATGGTCACTCATTGAAGAAGGTAACTTCGCTTTATTCTTATCAACTCAACTTCATTTATCTATTGAGATATTCAATTTCAAGTTAAATTCATATCAGGCAGTAAAGAATGAAGCATCCGGGAATTTCGGTCTCGCACTTTTGACAATAACTGAATGTGCTACTAATCCAGCAAAGTATTTTGCAAAGGTATTCATTCATCTTCACTTCAACTTTAGGGAAAGTACTTCCTTTAGGGGTGTCTGTGCTTCATAGCATGCGATGTCACCGGCAAATGTGGTTATATTCAATCACTTCTATTTTTTAATATTATTACCGATATTTACATGTCAGAGTTGTGTACAGTGTCGTGTTTCATAGATTAGGAATATTATAGAACCTTTTAAACGTCTAAAATTTTAATTACACAAAATTTGTATATTCACACTTTTGCCTCGATGCAGGTGTTGTATAAGGCAATGAAAGGTTTAGGGACTAATGATAGCACACTCATAAGGGTCATTGTAACAAGGACTGAGATTGATATGCAGTATATCAAAGCTGAATATGCAAAGAAATACAAGAAAACACTGAATGATGCAGTTCACTCTGAAACATCAGGCAACTACAGGGATTTTCTTCTCGCACTTTTGGGTCCGAATCACTAG

Protein sequence

>MS.gene85401.t1

MATLILPPIPPSPRDDAMQLYSAFKGFGCDTTAVINILAHRDATQRAYLQQEYKATYSEELSKRLVSELKGKLETAVLLWLPDPAARDAEIIRKSLVVDRSLEAATEVICSRTPSQLQYLKQLYHSKFGVYLEHEIELNTSGDHQKILLRYLTTPRHEGLEVNREIAQKDAKVLYKAGEKKLGTDEKTFVQIFSERSSAHLAAVSSYYHDMYGHSLKKAVKNEASGNFGLALLTITECATNPAKYFAKVLYKAMKGLGTNDSTLIRVIVTRTEIDMQYIKAEYAKKYKKTLNDAVHSETSGNYRDFLLALLGPNH