Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88170.t1 | XP_024636344.1 | 87.2 | 882 | 71 | 6 | 1 | 855 | 1 | 867 | 0.00E+00 | 1508.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88170.t1 | Q9FQ03 | 47.7 | 757 | 296 | 12 | 1 | 674 | 1 | 740 | 1.2e-179 | 631.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88170.t1 | G7JH90 | 86.0 | 879 | 66 | 6 | 1 | 855 | 1 | 846 | 0.0e+00 | 1475.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene88170 | 0.839306 | 1.71E-57 | -1.69E-46 |
| MS.gene049254 | MS.gene88170 | 0.842808 | 2.06E-58 | -1.69E-46 |
| MS.gene049404 | MS.gene88170 | 0.825336 | 4.96E-54 | -1.69E-46 |
| MS.gene049711 | MS.gene88170 | 0.820756 | 5.80E-53 | -1.69E-46 |
| MS.gene049850 | MS.gene88170 | 0.811712 | 6.11E-51 | -1.69E-46 |
| MS.gene050156 | MS.gene88170 | 0.845676 | 3.50E-59 | -1.69E-46 |
| MS.gene05045 | MS.gene88170 | 0.805788 | 1.13E-49 | -1.69E-46 |
| MS.gene050559 | MS.gene88170 | 0.812391 | 4.34E-51 | -1.69E-46 |
| MS.gene050561 | MS.gene88170 | 0.817252 | 3.63E-52 | -1.69E-46 |
| MS.gene050562 | MS.gene88170 | 0.812596 | 3.91E-51 | -1.69E-46 |
| MS.gene051247 | MS.gene88170 | 0.834799 | 2.43E-56 | -1.69E-46 |
| MS.gene051279 | MS.gene88170 | 0.832858 | 7.44E-56 | -1.69E-46 |
| MS.gene051719 | MS.gene88170 | 0.803649 | 3.15E-49 | -1.69E-46 |
| MS.gene051720 | MS.gene88170 | 0.808004 | 3.83E-50 | -1.69E-46 |
| MS.gene051744 | MS.gene88170 | 0.82953 | 4.89E-55 | -1.69E-46 |
| MS.gene051957 | MS.gene88170 | 0.828883 | 7.02E-55 | -1.69E-46 |
| MS.gene052208 | MS.gene88170 | 0.804418 | 2.18E-49 | -1.69E-46 |
| MS.gene052516 | MS.gene88170 | 0.821573 | 3.76E-53 | -1.69E-46 |
| MS.gene052582 | MS.gene88170 | 0.808653 | 2.79E-50 | -1.69E-46 |
| MS.gene052584 | MS.gene88170 | 0.815566 | 8.66E-52 | -1.69E-46 |
| MS.gene052611 | MS.gene88170 | 0.81116 | 8.04E-51 | -1.69E-46 |
| MS.gene052773 | MS.gene88170 | 0.813859 | 2.07E-51 | -1.69E-46 |
| MS.gene053226 | MS.gene88170 | 0.840313 | 9.38E-58 | -1.69E-46 |
| MS.gene053998 | MS.gene88170 | 0.840192 | 1.01E-57 | -1.69E-46 |
| MS.gene05415 | MS.gene88170 | 0.820632 | 6.19E-53 | -1.69E-46 |
| MS.gene054467 | MS.gene88170 | 0.811277 | 7.59E-51 | -1.69E-46 |
| MS.gene054651 | MS.gene88170 | 0.836724 | 7.91E-57 | -1.69E-46 |
| MS.gene054775 | MS.gene88170 | 0.811961 | 5.39E-51 | -1.69E-46 |
| MS.gene054991 | MS.gene88170 | 0.803751 | 3.00E-49 | -1.69E-46 |
| MS.gene055227 | MS.gene88170 | 0.828181 | 1.04E-54 | -1.69E-46 |
| MS.gene055818 | MS.gene88170 | 0.836123 | 1.12E-56 | -1.69E-46 |
| MS.gene05604 | MS.gene88170 | 0.822555 | 2.22E-53 | -1.69E-46 |
| MS.gene056050 | MS.gene88170 | 0.8679 | 9.73E-66 | -1.69E-46 |
| MS.gene056173 | MS.gene88170 | 0.821552 | 3.80E-53 | -1.69E-46 |
| MS.gene056174 | MS.gene88170 | 0.827497 | 1.51E-54 | -1.69E-46 |
| MS.gene056366 | MS.gene88170 | 0.820709 | 5.94E-53 | -1.69E-46 |
| MS.gene056595 | MS.gene88170 | 0.808506 | 3.00E-50 | -1.69E-46 |
| MS.gene05686 | MS.gene88170 | 0.842658 | 2.26E-58 | -1.69E-46 |
| MS.gene057132 | MS.gene88170 | 0.813006 | 3.18E-51 | -1.69E-46 |
| MS.gene057444 | MS.gene88170 | 0.829781 | 4.25E-55 | -1.69E-46 |
| MS.gene057855 | MS.gene88170 | 0.80759 | 4.69E-50 | -1.69E-46 |
| MS.gene057915 | MS.gene88170 | 0.81315 | 2.96E-51 | -1.69E-46 |
| MS.gene058010 | MS.gene88170 | 0.825833 | 3.78E-54 | -1.69E-46 |
| MS.gene058625 | MS.gene88170 | 0.84115 | 5.66E-58 | -1.69E-46 |
| MS.gene058979 | MS.gene88170 | 0.826321 | 2.89E-54 | -1.69E-46 |
| MS.gene059015 | MS.gene88170 | 0.826905 | 2.10E-54 | -1.69E-46 |
| MS.gene059272 | MS.gene88170 | 0.835619 | 1.51E-56 | -1.69E-46 |
| MS.gene059570 | MS.gene88170 | 0.810281 | 1.25E-50 | -1.69E-46 |
| MS.gene059584 | MS.gene88170 | 0.808477 | 3.04E-50 | -1.69E-46 |
| MS.gene059625 | MS.gene88170 | 0.800292 | 1.54E-48 | -1.69E-46 |
| MS.gene060167 | MS.gene88170 | 0.809929 | 1.48E-50 | -1.69E-46 |
| MS.gene060312 | MS.gene88170 | 0.806935 | 6.46E-50 | -1.69E-46 |
| MS.gene060521 | MS.gene88170 | 0.812373 | 4.38E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88170.t1 | MTR_4g051920 | 86.007 | 879 | 66 | 6 | 1 | 855 | 1 | 846 | 0.0 | 1522 |
| MS.gene88170.t1 | MTR_7g114570 | 45.718 | 689 | 252 | 11 | 1 | 641 | 1 | 615 | 0.0 | 570 |
| MS.gene88170.t1 | MTR_7g114570 | 45.718 | 689 | 252 | 11 | 1 | 641 | 1 | 615 | 0.0 | 570 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88170.t1 | AT1G75660 | 45.487 | 842 | 309 | 20 | 1 | 712 | 1 | 822 | 0.0 | 627 |
| MS.gene88170.t1 | AT5G42540 | 42.792 | 874 | 346 | 18 | 1 | 751 | 1 | 843 | 0.0 | 608 |
| MS.gene88170.t1 | AT5G42540 | 42.421 | 884 | 346 | 18 | 1 | 751 | 1 | 854 | 0.0 | 605 |
| MS.gene88170.t1 | AT1G54490 | 47.493 | 678 | 235 | 10 | 1 | 632 | 1 | 603 | 0.0 | 592 |
| MS.gene88170.t1 | AT1G54490 | 48.167 | 600 | 216 | 7 | 60 | 632 | 14 | 545 | 2.00e-178 | 537 |
Find 156 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTCATGATCGATCCTTTC+TGG | 0.136189 | 4.4:+50524612 | None:intergenic |
| CCTTAAGAGCCTTTGAAATT+TGG | 0.147817 | 4.4:+50530002 | None:intergenic |
| GCTTGCAGCTCTTGCATATT+TGG | 0.157293 | 4.4:-50529015 | MS.gene88170:intron |
| CTCACTTAAGTTAAACAAAT+TGG | 0.162061 | 4.4:-50525616 | MS.gene88170:CDS |
| TCCATTTGCTTCGGACTTAA+AGG | 0.176185 | 4.4:-50527189 | MS.gene88170:CDS |
| ACATTTGTAGTGTTTGTGTT+AGG | 0.225392 | 4.4:+50531428 | None:intergenic |
| CCAAATTTCAAAGGCTCTTA+AGG | 0.227180 | 4.4:-50530002 | MS.gene88170:CDS |
| AGTCAGCAATATAATCGTTT+TGG | 0.243811 | 4.4:-50524987 | MS.gene88170:CDS |
| TCTGCCTCACTTGCCATCTT+TGG | 0.255825 | 4.4:-50528870 | MS.gene88170:CDS |
| ATCTTCATTTGTTTCTTTGC+TGG | 0.261003 | 4.4:-50528902 | MS.gene88170:CDS |
| GACACTTCACATTCTTGTTT+TGG | 0.261610 | 4.4:+50530064 | None:intergenic |
| GCTGGTGTTGGATGGGGTTC+AGG | 0.272833 | 4.4:-50524645 | MS.gene88170:CDS |
| CCACCGACATTGAGCTAAAA+AGG | 0.295526 | 4.4:-50527766 | MS.gene88170:CDS |
| AACACGGTCCACTGTCTATA+TGG | 0.301590 | 4.4:-50529702 | MS.gene88170:CDS |
| GCCTCGCAAGCTATTGTATA+TGG | 0.302733 | 4.4:-50531165 | MS.gene88170:CDS |
| ATCAATCGTGCATAGGATTT+AGG | 0.310775 | 4.4:+50526971 | None:intergenic |
| TTATCTGATGCTAATGTTCC+TGG | 0.318479 | 4.4:-50529789 | MS.gene88170:CDS |
| TACACGCATTTCATCGTCTT+TGG | 0.335886 | 4.4:+50530248 | None:intergenic |
| CCACCAAAACTAGTCGAGTT+AGG | 0.337473 | 4.4:+50524714 | None:intergenic |
| TCCATTATGGAAGGGTATTA+TGG | 0.337543 | 4.4:-50529951 | MS.gene88170:intron |
| GGATATCCTCTGATCCATTA+TGG | 0.339612 | 4.4:-50529964 | MS.gene88170:CDS |
| CCAATTCCAACAGCTCATTT+AGG | 0.346839 | 4.4:-50524434 | MS.gene88170:CDS |
| CAACGTTCGAGTGCGCCTTT+TGG | 0.353812 | 4.4:-50524516 | MS.gene88170:CDS |
| CAAATTTCAAAGGCTCTTAA+GGG | 0.364695 | 4.4:-50530001 | MS.gene88170:CDS |
| GCTCCTTTGTGAATTGATTC+CGG | 0.366798 | 4.4:+50524666 | None:intergenic |
| TATAGACAGTGGACCGTGTT+TGG | 0.368333 | 4.4:+50529705 | None:intergenic |
| CCTAAATGAGCTGTTGGAAT+TGG | 0.368748 | 4.4:+50524434 | None:intergenic |
| CATTTGTAGTGTTTGTGTTA+GGG | 0.370412 | 4.4:+50531429 | None:intergenic |
| ATGACAGTCCAAGCATTATA+AGG | 0.371121 | 4.4:+50529578 | None:intergenic |
| TTGTTGTTGTTATCATCATT+AGG | 0.371287 | 4.4:+50531350 | None:intergenic |
| TTGAACCGCTTTGGAGCATT+TGG | 0.372267 | 4.4:+50529115 | None:intergenic |
| GATTAAACCTTGAACCGCTT+TGG | 0.375630 | 4.4:+50529106 | None:intergenic |
| AACAAATGCATAAAAGATAA+AGG | 0.380478 | 4.4:-50528055 | MS.gene88170:CDS |
| CCATTTGCTTCGGACTTAAA+GGG | 0.386749 | 4.4:-50527188 | MS.gene88170:CDS |
| TTAATGTCTTCAAACACCTT+TGG | 0.388588 | 4.4:+50531452 | None:intergenic |
| AAAATCTTCAATAAAAGAAC+TGG | 0.397229 | 4.4:-50528469 | MS.gene88170:CDS |
| ACCATAATACCCTTCCATAA+TGG | 0.397535 | 4.4:+50529950 | None:intergenic |
| AAGAAAGAGTTCGGTAAACT+TGG | 0.398193 | 4.4:-50528710 | MS.gene88170:CDS |
| TAATCCATTCTTGAGTTCTC+TGG | 0.403742 | 4.4:+50526605 | None:intergenic |
| AAGCTATTGTATATGGCTAT+TGG | 0.413300 | 4.4:-50531158 | MS.gene88170:intron |
| GGTCAAATAATCAAGACAAT+TGG | 0.416873 | 4.4:-50524776 | MS.gene88170:CDS |
| ACTGAGGAAGGAATTTGAAA+TGG | 0.428253 | 4.4:-50530104 | MS.gene88170:CDS |
| TAGATTAAATTGGGAACTGT+TGG | 0.428693 | 4.4:-50527833 | MS.gene88170:CDS |
| CACCAAAACTAGTCGAGTTA+GGG | 0.432605 | 4.4:+50524715 | None:intergenic |
| TTAAGGGTTATATTTCTTCA+AGG | 0.435607 | 4.4:-50529985 | MS.gene88170:CDS |
| CATAAACAACCTAATGATCA+TGG | 0.436115 | 4.4:-50524555 | MS.gene88170:CDS |
| CTTGCATATTTGGTTGTTGA+GGG | 0.437057 | 4.4:-50529005 | MS.gene88170:CDS |
| TAAAACGTCTAGTTCTTTGC+TGG | 0.439072 | 4.4:+50530277 | None:intergenic |
| AATATTTGACTTGTATCCTC+AGG | 0.445467 | 4.4:-50526930 | MS.gene88170:CDS |
| TGCAGCTTCTCATAGTAGTT+AGG | 0.445944 | 4.4:+50529139 | None:intergenic |
| ACAAATTGGATACAAGCATA+AGG | 0.446462 | 4.4:-50525602 | MS.gene88170:intron |
| TACGATCCTCCATGATCATT+AGG | 0.453549 | 4.4:+50524546 | None:intergenic |
| CCCTTTAAGTCCGAAGCAAA+TGG | 0.454665 | 4.4:+50527188 | None:intergenic |
| CAAAGGAGCTGGTGTTGGAT+GGG | 0.455954 | 4.4:-50524652 | MS.gene88170:CDS |
| AAAGGAGACTTGTTTAAGAG+TGG | 0.458064 | 4.4:-50528037 | MS.gene88170:CDS |
| TGCTTCGGACTTAAAGGGCA+TGG | 0.458670 | 4.4:-50527183 | MS.gene88170:CDS |
| CCACTATGGTCCATTTGCTT+CGG | 0.459238 | 4.4:-50527198 | MS.gene88170:CDS |
| TCATTAGGTTGTTTATGAAA+AGG | 0.459890 | 4.4:+50524561 | None:intergenic |
| ATCTTATGTTCCCCTTCTCC+AGG | 0.461936 | 4.4:+50529771 | None:intergenic |
| AGTTGATCAAAAGGTAAGAA+TGG | 0.463553 | 4.4:+50527128 | None:intergenic |
| ACACTTAAAAGTTGATCAAA+AGG | 0.465449 | 4.4:+50527119 | None:intergenic |
| TGCTCCTCCAACAACATTTG+TGG | 0.467498 | 4.4:-50531240 | MS.gene88170:CDS |
| GTTGGATGGGGTTCAGGCAG+AGG | 0.469950 | 4.4:-50524639 | MS.gene88170:CDS |
| AACACTTCCACAAATGTTGT+TGG | 0.470462 | 4.4:+50531233 | None:intergenic |
| AAATGCTCCAAAGCGGTTCA+AGG | 0.473649 | 4.4:-50529113 | MS.gene88170:intron |
| TGGTGTAAACCTTCCAGAAA+AGG | 0.474840 | 4.4:-50525246 | MS.gene88170:intron |
| ACTGTTTACAAGAAAGAGTT+CGG | 0.474900 | 4.4:-50528719 | MS.gene88170:CDS |
| GCTTCGGACTTAAAGGGCAT+GGG | 0.480049 | 4.4:-50527182 | MS.gene88170:CDS |
| TAAGTGTTCTCCCTCAAAAG+AGG | 0.480997 | 4.4:-50527103 | MS.gene88170:intron |
| ATAAGATTATGTCATTCATA+AGG | 0.484859 | 4.4:-50529755 | MS.gene88170:CDS |
| CAGGACTTGCTTCATGGACA+TGG | 0.486268 | 4.4:-50527516 | MS.gene88170:intron |
| ACAGCTCATTTAGGCCTCAA+TGG | 0.490917 | 4.4:-50524425 | MS.gene88170:CDS |
| ACATGACGCGTACCACCAAC+AGG | 0.495288 | 4.4:+50525284 | None:intergenic |
| GTATACTGAAGGTCTGTTGT+GGG | 0.502298 | 4.4:-50527557 | MS.gene88170:CDS |
| ACAGAATGAATGCGATTACA+TGG | 0.506206 | 4.4:-50528301 | MS.gene88170:CDS |
| CGACCTCGTCCACGACCAAA+AGG | 0.509238 | 4.4:+50524501 | None:intergenic |
| ACAAAGGAGCTGGTGTTGGA+TGG | 0.510814 | 4.4:-50524653 | MS.gene88170:CDS |
| TATTAGTGATCATGAACAAT+CGG | 0.512774 | 4.4:-50528419 | MS.gene88170:intron |
| AGGAAAGCGCTTCATGTGGC+AGG | 0.513892 | 4.4:-50526808 | MS.gene88170:intron |
| GAAACCAGAGAACTCAAGAA+TGG | 0.519565 | 4.4:-50526609 | MS.gene88170:CDS |
| AAAGAGTTCGGTAAACTTGG+AGG | 0.519768 | 4.4:-50528707 | MS.gene88170:CDS |
| ATGCTAATGTTCCTGGAGAA+GGG | 0.520161 | 4.4:-50529782 | MS.gene88170:CDS |
| TTGAGGCCTAAATGAGCTGT+TGG | 0.520881 | 4.4:+50524428 | None:intergenic |
| GATGCTAATGTTCCTGGAGA+AGG | 0.521838 | 4.4:-50529783 | MS.gene88170:CDS |
| ACCTCGTGAATATCCAAAGA+TGG | 0.523973 | 4.4:+50528857 | None:intergenic |
| ATCCTATGCACGATTGATGT+TGG | 0.527109 | 4.4:-50526966 | MS.gene88170:CDS |
| CAAATAATCAAGACAATTGG+AGG | 0.527407 | 4.4:-50524773 | MS.gene88170:CDS |
| TTTAGCAGCGACAGCATTGG+AGG | 0.532289 | 4.4:-50525467 | MS.gene88170:intron |
| ATTCACAAAGGAGCTGGTGT+TGG | 0.536127 | 4.4:-50524657 | MS.gene88170:CDS |
| AAAGGAGCTGGTGTTGGATG+GGG | 0.537514 | 4.4:-50524651 | MS.gene88170:CDS |
| GATGCTGACCTTATAATGCT+TGG | 0.541003 | 4.4:-50529586 | MS.gene88170:CDS |
| CATGTTCAGCATCTACTACA+TGG | 0.544550 | 4.4:-50525266 | MS.gene88170:CDS |
| GCGCACTCGAACGTTGATGA+TGG | 0.544916 | 4.4:+50524523 | None:intergenic |
| TCTTGCATATTTGGTTGTTG+AGG | 0.545104 | 4.4:-50529006 | MS.gene88170:CDS |
| AGTATACTGAAGGTCTGTTG+TGG | 0.546161 | 4.4:-50527558 | MS.gene88170:CDS |
| TGGAGGAATTCAAGCAGAGA+AGG | 0.546559 | 4.4:-50524756 | MS.gene88170:CDS |
| AGGAAGGAATTTGAAATGGA+AGG | 0.549315 | 4.4:-50530100 | MS.gene88170:CDS |
| GAATCAATTCACAAAGGAGC+TGG | 0.552611 | 4.4:-50524663 | MS.gene88170:CDS |
| ACTTCGTCTTTGATCTTGAG+CGG | 0.552614 | 4.4:-50528940 | MS.gene88170:CDS |
| ATCCTCTGATCCATTATGGA+AGG | 0.554798 | 4.4:-50529960 | MS.gene88170:CDS |
| GCCTCAATGGAGTGATTCAA+AGG | 0.557141 | 4.4:-50524412 | MS.gene88170:CDS |
| TAACACAAACACTACAAATG+TGG | 0.557233 | 4.4:-50531426 | MS.gene88170:CDS |
| TCCTTTGAATCACTCCATTG+AGG | 0.564584 | 4.4:+50524411 | None:intergenic |
| ACCAAAACTAGTCGAGTTAG+GGG | 0.565124 | 4.4:+50524716 | None:intergenic |
| ACTTCCACAAATGTTGTTGG+AGG | 0.568177 | 4.4:+50531236 | None:intergenic |
| CTTCGGACTTAAAGGGCATG+GGG | 0.579342 | 4.4:-50527181 | MS.gene88170:CDS |
| GTTCATGCACCAAATTTCAA+AGG | 0.582293 | 4.4:-50530011 | MS.gene88170:CDS |
| TAGGTTCAAAAGTATACTGA+AGG | 0.584641 | 4.4:-50527568 | MS.gene88170:CDS |
| TGCTAATGTTCCTGGAGAAG+GGG | 0.588627 | 4.4:-50529781 | MS.gene88170:CDS |
| GCCATATACAATAGCTTGCG+AGG | 0.591780 | 4.4:+50531164 | None:intergenic |
| TGTATGCAAACTTCCATACA+TGG | 0.591908 | 4.4:-50526652 | MS.gene88170:CDS |
| CTTGTATTTATAGGAAGTCG+AGG | 0.592321 | 4.4:-50530134 | MS.gene88170:intron |
| CGAGGAAGAGAGACTGAGGA+AGG | 0.595085 | 4.4:-50530116 | MS.gene88170:CDS |
| ATCAGACTGAGGACAAACAT+TGG | 0.595255 | 4.4:+50528218 | None:intergenic |
| TAAACTTGGAGGATATATTG+TGG | 0.602255 | 4.4:-50528696 | MS.gene88170:CDS |
| TTAGCAGCGACAGCATTGGA+GGG | 0.602382 | 4.4:-50525466 | MS.gene88170:intron |
| GCAAATGGACCATAGTGGTA+GGG | 0.606211 | 4.4:+50527203 | None:intergenic |
| ACCCTTCCATAATGGATCAG+AGG | 0.608192 | 4.4:+50529958 | None:intergenic |
| TGGTGCATGAACTCAGTCCC+TGG | 0.609128 | 4.4:+50530022 | None:intergenic |
| ATATTTGACTTGTATCCTCA+GGG | 0.609542 | 4.4:-50526929 | MS.gene88170:intron |
| AAATACGAGCATCCTGTTGG+TGG | 0.610921 | 4.4:-50525296 | MS.gene88170:CDS |
| TCCTCTGATCCATTATGGAA+GGG | 0.614366 | 4.4:-50529959 | MS.gene88170:CDS |
| AGCAAATGGACCATAGTGGT+AGG | 0.618914 | 4.4:+50527202 | None:intergenic |
| CAGGCAGAGGAAAACCAGAA+AGG | 0.620411 | 4.4:-50524626 | MS.gene88170:CDS |
| CCGAAGCAAATGGACCATAG+TGG | 0.629001 | 4.4:+50527198 | None:intergenic |
| TAGCAGCGACAGCATTGGAG+GGG | 0.633577 | 4.4:-50525465 | MS.gene88170:CDS |
| ATCCAACATCAATCGTGCAT+AGG | 0.633799 | 4.4:+50526964 | None:intergenic |
| GTCAAATACGAGCATCCTGT+TGG | 0.634197 | 4.4:-50525299 | MS.gene88170:CDS |
| GTTACTTAACAAATATCCAA+AGG | 0.635055 | 4.4:-50531468 | MS.gene88170:CDS |
| TGTCGTTCTCAACACACTCG+TGG | 0.635298 | 4.4:+50525429 | None:intergenic |
| ATATCCAAAGATGGCAAGTG+AGG | 0.636990 | 4.4:+50528866 | None:intergenic |
| TGAAAACGACATAAATGAGA+CGG | 0.639736 | 4.4:-50525027 | MS.gene88170:CDS |
| AGAATTTCAATGTGTACACA+TGG | 0.639863 | 4.4:-50524470 | MS.gene88170:CDS |
| GATTCTAATATAATAACACC+AGG | 0.640483 | 4.4:-50530040 | MS.gene88170:CDS |
| GTGATTCAAAGGATAGAAGT+CGG | 0.641506 | 4.4:-50524401 | MS.gene88170:CDS |
| TCATCATTAGGATGAAAGCA+TGG | 0.643391 | 4.4:+50531362 | None:intergenic |
| CCTTTGTGAATTGATTCCGG+AGG | 0.644128 | 4.4:+50524669 | None:intergenic |
| TGGAGATTTCTTGACTGACA+AGG | 0.644849 | 4.4:-50528017 | MS.gene88170:intron |
| GCCATCTTTGGATATTCACG+AGG | 0.647327 | 4.4:-50528858 | MS.gene88170:intron |
| AAGTCGAGGAAGAGAGACTG+AGG | 0.648676 | 4.4:-50530120 | MS.gene88170:CDS |
| GGTCCACTGTCTATATGGAT+CGG | 0.650979 | 4.4:-50529697 | MS.gene88170:intron |
| AGTAACCATCTATAAAACGA+TGG | 0.659634 | 4.4:+50531485 | None:intergenic |
| TAGAAGGAAAGCGCTTCATG+TGG | 0.670368 | 4.4:-50526812 | MS.gene88170:CDS |
| TTCTGATTATGATCCAAACA+CGG | 0.670995 | 4.4:-50529718 | MS.gene88170:CDS |
| CCAAAACTAGTCGAGTTAGG+GGG | 0.676446 | 4.4:+50524717 | None:intergenic |
| ATATATTGTGGACATAAACA+AGG | 0.676816 | 4.4:-50528684 | MS.gene88170:intron |
| CTTACTTCTTCATCAGACTG+AGG | 0.677507 | 4.4:+50528207 | None:intergenic |
| TGCAACCAAATGCTCCAAAG+CGG | 0.679567 | 4.4:-50529120 | MS.gene88170:CDS |
| AAACAGTTAGGGGAGAAACA+TGG | 0.682040 | 4.4:-50528553 | MS.gene88170:intron |
| ACATAAATGAGACGGTACTG+TGG | 0.689993 | 4.4:-50525019 | MS.gene88170:CDS |
| ATACCGATCCATATAGACAG+TGG | 0.691742 | 4.4:+50529694 | None:intergenic |
| CCTCCGGAATCAATTCACAA+AGG | 0.701480 | 4.4:-50524669 | MS.gene88170:CDS |
| ATTCAAAGGATAGAAGTCGG+TGG | 0.717801 | 4.4:-50524398 | MS.gene88170:CDS |
| AAACAACCTAATGATCATGG+AGG | 0.725320 | 4.4:-50524552 | MS.gene88170:CDS |
| ATTCTAATATAATAACACCA+GGG | 0.743037 | 4.4:-50530039 | MS.gene88170:CDS |
| TCATTCATAAGGAAACAGCG+TGG | 0.793260 | 4.4:-50529744 | MS.gene88170:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 50524395 | 50531516 | 50524395 | ID=MS.gene88170 |
| chr4.4 | mRNA | 50524395 | 50531516 | 50524395 | ID=MS.gene88170.t1;Parent=MS.gene88170 |
| chr4.4 | exon | 50531349 | 50531516 | 50531349 | ID=MS.gene88170.t1.exon1;Parent=MS.gene88170.t1 |
| chr4.4 | CDS | 50531349 | 50531516 | 50531349 | ID=cds.MS.gene88170.t1;Parent=MS.gene88170.t1 |
| chr4.4 | exon | 50531159 | 50531264 | 50531159 | ID=MS.gene88170.t1.exon2;Parent=MS.gene88170.t1 |
| chr4.4 | CDS | 50531159 | 50531264 | 50531159 | ID=cds.MS.gene88170.t1;Parent=MS.gene88170.t1 |
| chr4.4 | exon | 50530251 | 50530327 | 50530251 | ID=MS.gene88170.t1.exon3;Parent=MS.gene88170.t1 |
| chr4.4 | CDS | 50530251 | 50530327 | 50530251 | ID=cds.MS.gene88170.t1;Parent=MS.gene88170.t1 |
| chr4.4 | exon | 50529952 | 50530143 | 50529952 | ID=MS.gene88170.t1.exon4;Parent=MS.gene88170.t1 |
| chr4.4 | CDS | 50529952 | 50530143 | 50529952 | ID=cds.MS.gene88170.t1;Parent=MS.gene88170.t1 |
| chr4.4 | exon | 50529698 | 50529817 | 50529698 | ID=MS.gene88170.t1.exon5;Parent=MS.gene88170.t1 |
| chr4.4 | CDS | 50529698 | 50529817 | 50529698 | ID=cds.MS.gene88170.t1;Parent=MS.gene88170.t1 |
| chr4.4 | exon | 50529546 | 50529608 | 50529546 | ID=MS.gene88170.t1.exon6;Parent=MS.gene88170.t1 |
| chr4.4 | CDS | 50529546 | 50529608 | 50529546 | ID=cds.MS.gene88170.t1;Parent=MS.gene88170.t1 |
| chr4.4 | exon | 50529114 | 50529167 | 50529114 | ID=MS.gene88170.t1.exon7;Parent=MS.gene88170.t1 |
| chr4.4 | CDS | 50529114 | 50529167 | 50529114 | ID=cds.MS.gene88170.t1;Parent=MS.gene88170.t1 |
| chr4.4 | exon | 50528859 | 50529029 | 50528859 | ID=MS.gene88170.t1.exon8;Parent=MS.gene88170.t1 |
| chr4.4 | CDS | 50528859 | 50529029 | 50528859 | ID=cds.MS.gene88170.t1;Parent=MS.gene88170.t1 |
| chr4.4 | exon | 50528685 | 50528762 | 50528685 | ID=MS.gene88170.t1.exon9;Parent=MS.gene88170.t1 |
| chr4.4 | CDS | 50528685 | 50528762 | 50528685 | ID=cds.MS.gene88170.t1;Parent=MS.gene88170.t1 |
| chr4.4 | exon | 50528420 | 50528569 | 50528420 | ID=MS.gene88170.t1.exon10;Parent=MS.gene88170.t1 |
| chr4.4 | CDS | 50528420 | 50528569 | 50528420 | ID=cds.MS.gene88170.t1;Parent=MS.gene88170.t1 |
| chr4.4 | exon | 50528212 | 50528331 | 50528212 | ID=MS.gene88170.t1.exon11;Parent=MS.gene88170.t1 |
| chr4.4 | CDS | 50528212 | 50528331 | 50528212 | ID=cds.MS.gene88170.t1;Parent=MS.gene88170.t1 |
| chr4.4 | exon | 50528018 | 50528113 | 50528018 | ID=MS.gene88170.t1.exon12;Parent=MS.gene88170.t1 |
| chr4.4 | CDS | 50528018 | 50528113 | 50528018 | ID=cds.MS.gene88170.t1;Parent=MS.gene88170.t1 |
| chr4.4 | exon | 50527757 | 50527852 | 50527757 | ID=MS.gene88170.t1.exon13;Parent=MS.gene88170.t1 |
| chr4.4 | CDS | 50527757 | 50527852 | 50527757 | ID=cds.MS.gene88170.t1;Parent=MS.gene88170.t1 |
| chr4.4 | exon | 50527517 | 50527587 | 50527517 | ID=MS.gene88170.t1.exon14;Parent=MS.gene88170.t1 |
| chr4.4 | CDS | 50527517 | 50527587 | 50527517 | ID=cds.MS.gene88170.t1;Parent=MS.gene88170.t1 |
| chr4.4 | exon | 50527104 | 50527232 | 50527104 | ID=MS.gene88170.t1.exon15;Parent=MS.gene88170.t1 |
| chr4.4 | CDS | 50527104 | 50527232 | 50527104 | ID=cds.MS.gene88170.t1;Parent=MS.gene88170.t1 |
| chr4.4 | exon | 50526930 | 50527006 | 50526930 | ID=MS.gene88170.t1.exon16;Parent=MS.gene88170.t1 |
| chr4.4 | CDS | 50526930 | 50527006 | 50526930 | ID=cds.MS.gene88170.t1;Parent=MS.gene88170.t1 |
| chr4.4 | exon | 50526809 | 50526849 | 50526809 | ID=MS.gene88170.t1.exon17;Parent=MS.gene88170.t1 |
| chr4.4 | CDS | 50526809 | 50526849 | 50526809 | ID=cds.MS.gene88170.t1;Parent=MS.gene88170.t1 |
| chr4.4 | exon | 50526602 | 50526676 | 50526602 | ID=MS.gene88170.t1.exon18;Parent=MS.gene88170.t1 |
| chr4.4 | CDS | 50526602 | 50526676 | 50526602 | ID=cds.MS.gene88170.t1;Parent=MS.gene88170.t1 |
| chr4.4 | exon | 50525603 | 50525655 | 50525603 | ID=MS.gene88170.t1.exon19;Parent=MS.gene88170.t1 |
| chr4.4 | CDS | 50525603 | 50525655 | 50525603 | ID=cds.MS.gene88170.t1;Parent=MS.gene88170.t1 |
| chr4.4 | exon | 50525410 | 50525484 | 50525410 | ID=MS.gene88170.t1.exon20;Parent=MS.gene88170.t1 |
| chr4.4 | CDS | 50525410 | 50525484 | 50525410 | ID=cds.MS.gene88170.t1;Parent=MS.gene88170.t1 |
| chr4.4 | exon | 50525247 | 50525325 | 50525247 | ID=MS.gene88170.t1.exon21;Parent=MS.gene88170.t1 |
| chr4.4 | CDS | 50525247 | 50525325 | 50525247 | ID=cds.MS.gene88170.t1;Parent=MS.gene88170.t1 |
| chr4.4 | exon | 50524984 | 50525057 | 50524984 | ID=MS.gene88170.t1.exon22;Parent=MS.gene88170.t1 |
| chr4.4 | CDS | 50524984 | 50525057 | 50524984 | ID=cds.MS.gene88170.t1;Parent=MS.gene88170.t1 |
| chr4.4 | exon | 50524395 | 50524797 | 50524395 | ID=MS.gene88170.t1.exon23;Parent=MS.gene88170.t1 |
| chr4.4 | CDS | 50524395 | 50524797 | 50524395 | ID=cds.MS.gene88170.t1;Parent=MS.gene88170.t1 |
| Gene Sequence |
| Protein sequence |
