AlfalfaGEDB | MS.gene88340

M. sativa cultivar XinJiangDaYe / MS.gene88340

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030246 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28 PF00139.22

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene88340.t1	XP_003612439.2	94.4	698	39	0	1	698	1	698	0.00E+00	1274.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene88340.t1	Q9FG33	38.2	673	351	20	25	672	9	641	5.2e-117	423.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene88340.t1	G7K2N4	94.4	698	39	0	1	698	1	698	0.0e+00	1274.2

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049171	MS.gene88340	-0.831266	1.84E-55	-1.69E-46
MS.gene049281	MS.gene88340	0.822385	2.44E-53	-1.69E-46
MS.gene049609	MS.gene88340	-0.807577	4.72E-50	-1.69E-46
MS.gene049633	MS.gene88340	-0.8099	1.51E-50	-1.69E-46
MS.gene050363	MS.gene88340	0.824177	9.29E-54	-1.69E-46
MS.gene050381	MS.gene88340	0.824768	6.75E-54	-1.69E-46
MS.gene050547	MS.gene88340	0.801739	7.81E-49	-1.69E-46
MS.gene050612	MS.gene88340	-0.806935	6.46E-50	-1.69E-46
MS.gene050772	MS.gene88340	-0.808005	3.83E-50	-1.69E-46
MS.gene05080	MS.gene88340	-0.815588	8.56E-52	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene88340.t1	MTR_5g025020	96.418	698	25	0	1	698	1	698	0.0	1400
MS.gene88340.t1	MTR_0015s0030	38.997	618	332	14	61	657	43	636	3.03e-136	416
MS.gene88340.t1	MTR_8g067735	39.619	578	317	13	88	650	84	644	2.81e-131	403
MS.gene88340.t1	MTR_7g063030	39.812	638	308	19	80	675	52	655	1.69e-130	400
MS.gene88340.t1	MTR_7g063030	39.812	638	308	19	80	675	46	649	1.73e-130	400
MS.gene88340.t1	MTR_7g063010	40.753	584	292	13	88	644	61	617	1.13e-129	400
MS.gene88340.t1	MTR_4g093080	39.182	587	314	11	88	650	66	633	1.96e-128	400
MS.gene88340.t1	MTR_8g067930	37.937	601	338	15	88	672	65	646	1.45e-127	393
MS.gene88340.t1	MTR_8g068050	37.168	678	370	19	41	685	26	680	3.13e-125	388
MS.gene88340.t1	MTR_8g067690	39.298	570	310	14	88	650	101	641	3.28e-121	377

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene88340.t1	AT5G06740	39.759	664	353	20	25	672	9	641	1.34e-148	447
MS.gene88340.t1	AT5G06740	39.759	664	353	20	25	672	21	653	2.27e-148	447
MS.gene88340.t1	AT5G55830	39.404	604	313	14	86	652	68	655	3.58e-128	395
MS.gene88340.t1	AT2G37710	38.384	594	308	14	87	648	63	630	3.94e-122	379
MS.gene88340.t1	AT3G53810	37.419	620	330	16	85	669	61	657	1.70e-119	373
MS.gene88340.t1	AT5G03140	36.667	660	332	18	85	688	71	700	1.16e-115	363
MS.gene88340.t1	AT3G55550	37.943	593	319	13	88	653	63	633	1.28e-113	357
MS.gene88340.t1	AT4G02420	36.538	624	323	16	65	648	43	633	2.51e-112	353
MS.gene88340.t1	AT4G02410	37.018	597	320	16	86	648	64	638	1.19e-111	352
MS.gene88340.t1	AT5G10530	37.241	580	333	13	87	650	57	621	2.84e-111	350

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Find 152 sgRNAs with CRISPR-Local

Find 262 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACATCTTGTTAAGTTACA+AGG	0.537792	5.3:-14665585	MS.gene88340:intron
AAACTTGGACAAGGTGGATA+TGG	0.326853	5.3:-14665735	MS.gene88340:CDS
AAATATTTGAGTATTGGTTT+AGG	0.389709	5.3:-14665954	MS.gene88340:CDS
AAATCTTAGTGTCTACATGG+CGG	0.728575	5.3:-14666171	MS.gene88340:CDS
AAATGAGTATGATGTTGAAG+AGG	0.683213	5.3:-14663492	MS.gene88340:CDS
AACAGCGACAAAACGGTTGG+TGG	0.553304	5.3:+14666355	None:intergenic
AACATCTTTCGCTACAACAA+CGG	0.566888	5.3:-14666485	MS.gene88340:CDS
AACCACCGGAGCTATTGAGA+GGG	0.654131	5.3:+14666414	None:intergenic
AAGAAGAAGAGTGATGAACA+TGG	0.641789	5.3:-14665864	MS.gene88340:CDS
AAGCATAAACTTGGACAAGG+TGG	0.608169	5.3:-14665741	MS.gene88340:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGTTACGAAAAGCTGAAT+TGG	+	chr5.3:14665360-14665379	None:intergenic	30.0%
AAATGAGTATGATGTTGAAG+AGG	-	chr5.3:14666561-14666580	MS.gene88340:CDS	30.0%
AATATATGATGACTTTGGCT+TGG	-	chr5.3:14665419-14665438	MS.gene88340:intron	30.0%
AGTTAAACTGTGTACTTAGA+TGG	-	chr5.3:14664037-14664056	MS.gene88340:intron	30.0%
ATGTATCCAAATTCGTACTT+TGG	-	chr5.3:14665508-14665527	MS.gene88340:intron	30.0%
ATTCTCAGATAACAGTTCTT+TGG	-	chr5.3:14666831-14666850	MS.gene88340:CDS	30.0%
GCTAAAATCAAAACCAATAG+AGG	+	chr5.3:14664135-14664154	None:intergenic	30.0%
GGTTCTACTTCTCAAATAAT+GGG	-	chr5.3:14664210-14664229	MS.gene88340:intron	30.0%
GTTACCTATAGTGAAAAAAC+CGG	-	chr5.3:14663921-14663940	MS.gene88340:CDS	30.0%
TATACACCAAAGTACGAATT+TGG	+	chr5.3:14665517-14665536	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.3	gene	14663217	14666858	14663217	ID=MS.gene88340
chr5.3	mRNA	14663217	14666858	14663217	ID=MS.gene88340.t1;Parent=MS.gene88340
chr5.3	exon	14665586	14666858	14665586	ID=MS.gene88340.t1.exon1;Parent=MS.gene88340.t1
chr5.3	CDS	14665586	14666858	14665586	ID=cds.MS.gene88340.t1;Parent=MS.gene88340.t1
chr5.3	exon	14663217	14664040	14663217	ID=MS.gene88340.t1.exon2;Parent=MS.gene88340.t1
chr5.3	CDS	14663217	14664040	14663217	ID=cds.MS.gene88340.t1;Parent=MS.gene88340.t1

Gene Sequence

>MS.gene88340

ATGCTTTCCATTCAGTGTCGCCGCCGGCACAAGTCCGACATGGCTTACCTCACCGCCCTCATCGGCATTCTTCTCCTCTTCCCGGCGGCAACCTCCCAAGCTGAAATCCTCAAAAAAGAAACTCACTTCTTTGGTCCCTTCAACACCACCAATGAACACTATTTTCAAACTTTATCCACCGCATCCATCCATCTTGGTGCCCTTCAGGTCACCCCGGACAGCGCAGGAAGTTCAACCATCGTTCCCCTTTTCAACAACTCCGGTAGAGTCTTTTACAAAGACCCCTTTAAACTCTGGGATGGCTCCTCCTCCACCGGAAAACTTGTCTCCTTCAATACTTCATTTCTTATCAACATCTTTCGCTACAACAACGGTACCCCCGGTGAAGGTCTTGCTTTCATCATCGCACCTTCTCTAACCATCCCTCTCAATAGCTCCGGTGGTTACCTAGGGTTAACAAACGCAACCACAGACGGAAACTCCACCAACCGTTTTGTCGCTGTTGAACTTGACACGGTTAAACAAGACTTTGATGATGACAACAACCACATCGGACTTGACATAAACAGCGTTCGTTCCAACGTTAGTGTTCCTCTTGATTTGGAGCTCTCTCCAAACGGAACTAGATTCCATGTTTTATGGGTTGAATACGACGGTGACCGAAAAAATCTTAGTGTCTACATGGCGGAACAACCTTCACAGGAGTTACCTATAGTGAAAAAACCGGCTAAACCGATTATAAGTTCTGTTCTTGATCTAAGAAAAGTGGTGAGTCAAAATTCTTATTTTGGATTTTCTGCTTCAACGGGTGTTACAGTTGAGTTAAACTGTGTACTTAGATGGAATATTTCAGTTGAAGTGTTTGATAATGATAAAAATGAAAAATATTTGAGTATTGGTTTAGGTGTTGGGATTCCTCTATTGGTTTTGATTTTAGCTGGTGGTGGATTTTGGTATTATTATTTATGTAAGAAGAAGAAGAGTGATGAACATGGTTCTACTTCTCAAATAATGGGTACATTGAAAAGTTTACCAGGTACACCAAGAGAGTTTAGTTTTCAAGAATTGAAGAAAGCTACAAATAATTTTGATGAAAAGCATAAACTTGGACAAGGTGGATATGGTGTTGTTTATAGAGGAACTTTACCTAAGGAAAAATTAGAAGTTGCTGTTAAGATGTTTTCTAGAGATAAGATGAAAAGTACTGATGATTTCTTGGCTGAACTTACTATTATCAATCGTCTTCGTCATAAACATCTTGTTAAGTTACAAGGTCAGTTTCATTTTTCATTCATTCATTTATTTATTTCAGTTCTTTTTTTTTTTTTAATCTTAATTTAATTTTCATTAAGCTTTATCATTATTTCATTAAATTCTCTAAGTTAGAGGTTAGATCTAATATTAGATATGTCCAGATCATCATATAATTGTTTAGGAATGTTTGATACCATTTTGTCTGTGTTACCGTTATTGTTGATAATTGAATTATTGATACTTTTGACCAGCTATTGGTGAAGGTTGGTGGTGTGTCTGGTCTTTTAAAAGAGAAAATGCATTTTTGTAATCTAAAATAAAACATGCATTGTTGTGATCTAGCTAGGTACTTTACCTTGATTAGCTGTACTTTTGTTTTGCCCTATGATTTTGTTTTGGATTGAAAGTGACATTTGATTCTTATGACCGTATATGGTCAATATTAATTGCTATTCCAATAATTGAAAGAGCTTTTTCTGCCTTTTGTCCGTATGGTCAATACTTAGCTTAAGCTTCATTTCATTGAACCTTCTTCCTTCATCCATCCTCAACGCTGAAAATTGATGGAAAAAAAGAAGAAGAAAATATCAACGCCGAAATTGATATTACAAGCATAATATCCTTTTCAATCTAAATTTCCAACGTAACATTGTCAACTTATTAATTAGTCAAAATAAAAAAATTAATAGATTTTAGAGTAGAAAAAACTTAATTGAGTATCATCTTCTAGTTAATTAAGGCCCTAGTGGTAAACACAACCCTATCAGCCGGCCAGTGTTTCCACGAGTCTTCTTTTTTTATATGGTAAGATAAGATAAAAGCCACGAGTTATTATCATCAATAATCATAATATAATATATATTGATAATAACAATAATAATGCATACCAATTCAGCTTTTCGTAACTTTTAAGCATTGCCAACTAGTCTAACAAAAGAGTTCATAAATAATATATGATGACTTTGGCTTGGTTTGGTAAAGTAAAGACTAACCATGTTGCCAACTTGTCATCAAAGAGATGACGATGGATGTGTACTATGTATCCAAATTCGTACTTTGGTGTATAAAAATTCAATGTTTTTACTCTTATTGACTGAGTACCTAAATTCAATGTTTGAATGTAAGTCGATAATTGATAATATTATTGTCATTGAATCAAATGTTCATTTAAATATTTTTAGAGAGAGTTTATCATTCATTTAAGTTCAATAAAGATCGAGAGATTAGTCTCCACAATTGTACGTGGAGGAAATCCGGTTCACACCAAAAAAATGTTAGTTTAAATATGTTTGTTTGAGTCAAAATTCAATTTATCATTTGACAAAATTATGTGCCATTTTAGTCCTTTAAGAATGACATTAGTATCTTTTGAATGATAAAACTATTAAATTAAGGACTAACATGTCTTCATTTTATCATTCACCACGATTGATATGATTTTTTTCTCAGGACTGAAATGGTACACTCGGTTTTTATCAGAAACTAATTTGAACCATTATCCTTAAATATTTATCAGCTTATTTTATCTTTAATATACATAGATTAATTTGAAAATAATATGCAGGATGGTGCCACAAAAACGGAGTATTGCTCTTAGTATACGACTACATGCCTAACGGAAGCTTAGACAACCACATATTTTGCGAGGAAGGAACAAGCACAACCCCTCTAAGTTGGAATCTAAGGTACAAAATCCTCTCAGGCGTCGCTTCTGCATTGAACTACCTACACAACGAGTACGATCAAACCGTAGTCCACAGAGACCTTAAAGCAAGCAACATAATGCTAGACGTTGATTTCAATGCACGTTTAGGTGATTTCGGCTTAGCACGTGCACTAGAGAATGAAAAAACATCCTATGCAGAATTAGAAGGAGTACAAGGTACAATGGGATACATAGCACCAGAATGTTTCCACACAGGAAAAGCTTCAAGAGAATCAGATGTTTATGGACTTGGTGCTGTGTTTCTTGAAACAGTTTGTGGTCAAAGACCTTGGACTAAAATCGAAGGGTATCAATTTTTGGTGGATTGGGTTTGGTATTTACATCGTGAAGGAAGGATTTTAGAAGCAGTTGATCAAAGTGTTGGAAATGAGTATGATGTTGAAGAGGTAGAGAGGGTATTGAAATTGGGATTGGCTTGTTCTCATCCTATTGCTAGTGAGAGACCAAATTTGCAAATGATTGTTCAGATTTTATCTGGGTCAGTTAATGTGCCTCATGTGCCACCTTTTAAACCTTCTTTTATGTGGCCAGCTGTGGATTTAGCTAGTCTTGCAAGTACTGATTTTACAACAACAAATACTAGTGAGTACACACCAATCAATACTAGTAACTCACAATCTTCTATGCATGTTGGATTCTCAGATAACAGTTCTTTGGTCTAA

Protein sequence

>MS.gene88340.t1

MLSIQCRRRHKSDMAYLTALIGILLLFPAATSQAEILKKETHFFGPFNTTNEHYFQTLSTASIHLGALQVTPDSAGSSTIVPLFNNSGRVFYKDPFKLWDGSSSTGKLVSFNTSFLINIFRYNNGTPGEGLAFIIAPSLTIPLNSSGGYLGLTNATTDGNSTNRFVAVELDTVKQDFDDDNNHIGLDINSVRSNVSVPLDLELSPNGTRFHVLWVEYDGDRKNLSVYMAEQPSQELPIVKKPAKPIISSVLDLRKVVSQNSYFGFSASTGVTVELNCVLRWNISVEVFDNDKNEKYLSIGLGVGIPLLVLILAGGGFWYYYLCKKKKSDEHGSTSQIMGTLKSLPGTPREFSFQELKKATNNFDEKHKLGQGGYGVVYRGTLPKEKLEVAVKMFSRDKMKSTDDFLAELTIINRLRHKHLVKLQGWCHKNGVLLLVYDYMPNGSLDNHIFCEEGTSTTPLSWNLRYKILSGVASALNYLHNEYDQTVVHRDLKASNIMLDVDFNARLGDFGLARALENEKTSYAELEGVQGTMGYIAPECFHTGKASRESDVYGLGAVFLETVCGQRPWTKIEGYQFLVDWVWYLHREGRILEAVDQSVGNEYDVEEVERVLKLGLACSHPIASERPNLQMIVQILSGSVNVPHVPPFKPSFMWPAVDLASLASTDFTTTNTSEYTPINTSNSQSSMHVGFSDNSSLV