AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene058338


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene058338.t1 MTR_3g007470 94.603 315 15 1 1 313 1 315 0.0 577
MS.gene058338.t1 MTR_3g072830 62.458 301 110 3 11 309 75 374 2.57e-123 361
MS.gene058338.t1 MTR_3g072840 64.130 276 95 4 41 313 103 377 6.36e-104 311
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene058338.t1 AT2G41705 56.419 296 114 5 20 313 109 391 5.44e-90 276
MS.gene058338.t1 AT2G41705 56.419 296 114 5 20 313 109 391 5.44e-90 276
MS.gene058338.t1 AT2G41705 56.419 296 114 5 20 313 109 391 5.44e-90 276
MS.gene058338.t1 AT2G41705 56.419 296 114 5 20 313 109 391 5.44e-90 276

Find 67 sgRNAs with CRISPR-Local

Find 151 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAAAGAATTGCCAAAGTTAT+TGG 0.149331 3.2:+2097343 MS.gene058338:CDS
TATACTCTGGACAAGTTATT+TGG 0.190006 3.2:+2098180 MS.gene058338:CDS
GTTTCAAGTGGCTTCTTATA+AGG 0.252360 3.2:+2099565 MS.gene058338:CDS
TGCACTAACAACTGGTTACT+TGG 0.282862 3.2:+2098734 MS.gene058338:CDS
TGCTTCATATTTGATTCATT+TGG 0.285021 3.2:+2097370 MS.gene058338:CDS
GATCAAGAGGTTTGTTGAAT+TGG 0.285501 3.2:+2099838 MS.gene058338:CDS
ATGCTTGAACTCAGTGTTAC+TGG 0.290373 3.2:+2098792 MS.gene058338:CDS
TTCCACCTTTGCCTTGGTCT+TGG 0.290430 3.2:-2099622 None:intergenic
CCTTGACCTTCCTTCTAATA+TGG 0.294484 3.2:+2098245 MS.gene058338:CDS
CTAATCCATGTCCATTTAAT+CGG 0.327520 3.2:-2099815 None:intergenic
GGACATTTGTTCAGATGTTA+AGG 0.336499 3.2:-2097020 None:intergenic
CGATTAAATGGACATGGATT+AGG 0.339220 3.2:+2099816 MS.gene058338:CDS
ATCAAATGTGTCCAAGTATC+TGG 0.347261 3.2:+2098707 MS.gene058338:CDS
CTGTGGATCGCTTGCATTGT+TGG 0.347554 3.2:+2099759 MS.gene058338:CDS
GCTTGCATTGTTGGACCTAT+TGG 0.348772 3.2:+2099768 MS.gene058338:CDS
CTATTGGTGTGTGGATTAGA+TGG 0.352343 3.2:+2099784 MS.gene058338:CDS
AACTCAGTGTTACTGGGAAT+TGG 0.357866 3.2:+2098799 MS.gene058338:CDS
AATTGGCTCTTTGTTGTGCT+TGG 0.359346 3.2:+2098816 MS.gene058338:CDS
GTTGTGCTTGGCTTTCTAAT+AGG 0.360921 3.2:+2098828 MS.gene058338:CDS
AACTTTGGCAATTCTTTACT+AGG 0.383927 3.2:-2097338 None:intergenic
AACAAATTGCAGCTTCATCT+TGG 0.384111 3.2:+2096968 MS.gene058338:CDS
GAAGCCTTCCACCTTTGCCT+TGG 0.401735 3.2:-2099628 None:intergenic
CATCTAATCCACACACCAAT+AGG 0.415558 3.2:-2099783 None:intergenic
CAAAATAGAGGAGACAGAAT+TGG 0.415576 3.2:-2096996 None:intergenic
GTCTAACAACGTTCAGCGGC+TGG 0.427914 3.2:+2098760 MS.gene058338:CDS
TTGTTGAATTGGATGCGATT+TGG 0.438896 3.2:+2099849 MS.gene058338:CDS
CTGGCTGTTGCACTAACAAC+TGG 0.450496 3.2:+2098726 MS.gene058338:CDS
AAAGTAGAGACCATATTAGA+AGG 0.455328 3.2:-2098255 None:intergenic
GAAGCATTATCCAATAACTT+TGG 0.459077 3.2:-2097353 None:intergenic
TAGTGCAACAGCCAGATACT+TGG 0.469450 3.2:-2098718 None:intergenic
TATACCAAATATGATGGAAA+AGG 0.471958 3.2:-2099529 None:intergenic
TCTCTTTCAATGCTTAAAAG+AGG 0.475659 3.2:-2097043 None:intergenic
GACATTTGTTCAGATGTTAA+GGG 0.482779 3.2:-2097019 None:intergenic
AGGAAGGTCAAGGTAAAGAA+TGG 0.496325 3.2:-2098235 None:intergenic
CTAGTCACATGACCGACACT+AGG 0.497152 3.2:-2098204 None:intergenic
GCACTAACAACTGGTTACTT+GGG 0.497800 3.2:+2098735 MS.gene058338:CDS
TTTGGTATAGAAACAGCTAA+AGG 0.499560 3.2:+2099543 MS.gene058338:CDS
GGCTTGTTATGGGGTATTAG+CGG 0.501647 3.2:+2099693 MS.gene058338:CDS
TAAGGCTAAACGTGACTTCA+CGG 0.507240 3.2:+2099583 MS.gene058338:CDS
TGTCTCTGCTGCTTGTATCA+TGG 0.508900 3.2:+2099887 MS.gene058338:CDS
TAATCCATGTCCATTTAATC+GGG 0.510063 3.2:-2099814 None:intergenic
CTCTTTCAATGCTTAAAAGA+GGG 0.510773 3.2:-2097042 None:intergenic
ATGATTGCTGAATTCAAGAA+TGG 0.528647 3.2:+2099723 MS.gene058338:CDS
AGCCAAGACCAAGGCAAAGG+TGG 0.538663 3.2:+2099620 MS.gene058338:CDS
TGTTTCTATACCAAATATGA+TGG 0.543659 3.2:-2099535 None:intergenic
TGCTTGAACTCAGTGTTACT+GGG 0.546484 3.2:+2098793 MS.gene058338:CDS
ACATCACTTAGTAGTTATGC+TGG 0.551387 3.2:+2099653 MS.gene058338:CDS
AGATGTTAAGGGCAAAATAG+AGG 0.551740 3.2:-2097008 None:intergenic
GGTATTAACAAGATATACTC+TGG 0.561065 3.2:+2098167 MS.gene058338:intron
GGTCAAGGTAAAGAATGGTT+TGG 0.564374 3.2:-2098230 None:intergenic
AAGTTATTTGGCCCTAGTGT+CGG 0.566597 3.2:+2098192 MS.gene058338:CDS
CATGAAATGGAGCATGATGT+TGG 0.566790 3.2:+2096941 None:intergenic
TAGAGACCATATTAGAAGGA+AGG 0.567138 3.2:-2098251 None:intergenic
TGATTCTGAAGACATACAGC+AGG 0.567210 3.2:+2097066 MS.gene058338:CDS
GGACATGGATTAGGATCAAG+AGG 0.570024 3.2:+2099825 MS.gene058338:CDS
TTATCCCGATTAAATGGACA+TGG 0.574742 3.2:+2099810 MS.gene058338:CDS
TAGAGCCAAGACCAAGGCAA+AGG 0.580140 3.2:+2099617 MS.gene058338:CDS
AAGACCAAGGCAAAGGTGGA+AGG 0.581372 3.2:+2099624 MS.gene058338:CDS
CACTAACAACTGGTTACTTG+GGG 0.588421 3.2:+2098736 MS.gene058338:CDS
TTGTTGGACCTATTGGTGTG+TGG 0.595973 3.2:+2099775 MS.gene058338:CDS
AAACAGCTAAAGGTTTCAAG+TGG 0.608710 3.2:+2099553 MS.gene058338:CDS
TCTTTCAATGCTTAAAAGAG+GGG 0.609892 3.2:-2097041 None:intergenic
TAGTCACATGACCGACACTA+GGG 0.613234 3.2:-2098203 None:intergenic
CCATATTAGAAGGAAGGTCA+AGG 0.628711 3.2:-2098245 None:intergenic
AGCTAGTAGAGCCAAGACCA+AGG 0.636125 3.2:+2099611 MS.gene058338:CDS
ATGGTGAAAATGCTTATCTG+TGG 0.657260 3.2:+2099742 MS.gene058338:CDS
GGGAGTCTAACAACGTTCAG+CGG 0.685990 3.2:+2098756 MS.gene058338:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTAAATTTCAATTATTGTA+CGG + chr3.2:2097852-2097871 MS.gene058338:intron 10.0%
!!! TATATATTTTTAATGATTTG+AGG - chr3.2:2097196-2097215 None:intergenic 10.0%
!!! TATTTTAAATAATCAATCAT+AGG - chr3.2:2098518-2098537 None:intergenic 10.0%
!! AACAATAATCATGTATTATA+GGG + chr3.2:2099388-2099407 MS.gene058338:intron 15.0%
!!! TACTATTTTTTGTTTTCTTA+TGG + chr3.2:2097272-2097291 MS.gene058338:intron 15.0%
!!! TCATTTTCTGTTTATAATAT+CGG + chr3.2:2097783-2097802 MS.gene058338:intron 15.0%
!! ATAGGTAATGTTAATTAAGA+AGG + chr3.2:2098846-2098865 MS.gene058338:intron 20.0%
!! ATTATATTGCCCAAAAATAA+AGG - chr3.2:2098055-2098074 None:intergenic 20.0%
!! CAACAATAATCATGTATTAT+AGG + chr3.2:2099387-2099406 MS.gene058338:intron 20.0%
!! TATAATGAACTTATGAATTC+TGG + chr3.2:2098069-2098088 MS.gene058338:intron 20.0%
!! TTGATATCATTATGATACAA+AGG - chr3.2:2098341-2098360 None:intergenic 20.0%
!!! AAGATTCAAAACATTTTTGT+TGG + chr3.2:2097112-2097131 MS.gene058338:intron 20.0%
!!! AATTGTAAGTTTTGTAATAC+AGG + chr3.2:2099337-2099356 MS.gene058338:intron 20.0%
!!! TACTGTTCAATAACTTTTTA+CGG + chr3.2:2099095-2099114 MS.gene058338:intron 20.0%
!!! TTTTGTTTTCTTATGGTAAA+TGG + chr3.2:2097279-2097298 MS.gene058338:intron 20.0%
! AAATATCATAAAGCTGAAGT+TGG - chr3.2:2097639-2097658 None:intergenic 25.0%
! ATCATTATGATACAAAGGAA+TGG - chr3.2:2098336-2098355 None:intergenic 25.0%
! CAACTATAGTTTATGAGAAA+AGG + chr3.2:2098444-2098463 MS.gene058338:intron 25.0%
! GTTGTTCATACTTTATACAA+TGG - chr3.2:2097906-2097925 None:intergenic 25.0%
! TAAAGAATTGCCAAAGTTAT+TGG + chr3.2:2097343-2097362 MS.gene058338:CDS 25.0%
! TGAAATAAAACCTCATGTAA+TGG + chr3.2:2097719-2097738 MS.gene058338:intron 25.0%
! TGCTTCATATTTGATTCATT+TGG + chr3.2:2097370-2097389 MS.gene058338:CDS 25.0%
! TTTATATGAGAACTAGAGAA+GGG + chr3.2:2099166-2099185 MS.gene058338:intron 25.0%
!! AAAAGTGTAGACTTAATTTC+TGG + chr3.2:2098366-2098385 MS.gene058338:intron 25.0%
!! AACTTCAGCTTTATGATATT+TGG + chr3.2:2097638-2097657 MS.gene058338:intron 25.0%
!! ACTTTTATGAATGTCTTTCT+AGG + chr3.2:2098635-2098654 MS.gene058338:intron 25.0%
!! ATTTTATCATTGAAGTTCAG+AGG - chr3.2:2097428-2097447 None:intergenic 25.0%
!! GATTATCTTCATCATCTTTT+AGG + chr3.2:2097821-2097840 MS.gene058338:intron 25.0%
!! TATACCAAATATGATGGAAA+AGG - chr3.2:2099532-2099551 None:intergenic 25.0%
!! TGTTTCTATACCAAATATGA+TGG - chr3.2:2099538-2099557 None:intergenic 25.0%
!! TTTTATATGAGAACTAGAGA+AGG + chr3.2:2099165-2099184 MS.gene058338:intron 25.0%
!!! ATAAGTATGTTTTAGTGGTA+TGG + chr3.2:2098877-2098896 MS.gene058338:intron 25.0%
!!! GTTTGATAAGTATGTTTTAG+TGG + chr3.2:2098872-2098891 MS.gene058338:intron 25.0%
!!! TGTTGCATTCCTTTATTTTT+GGG + chr3.2:2098043-2098062 MS.gene058338:intron 25.0%
!!! TTGTTGCATTCCTTTATTTT+TGG + chr3.2:2098042-2098061 MS.gene058338:intron 25.0%
!!! TTGTTTTGCTATTATAATGC+AGG + chr3.2:2098146-2098165 MS.gene058338:intron 25.0%
AAAGTAGAGACCATATTAGA+AGG - chr3.2:2098258-2098277 None:intergenic 30.0%
AACTTTGGCAATTCTTTACT+AGG - chr3.2:2097341-2097360 None:intergenic 30.0%
ATGATTGCTGAATTCAAGAA+TGG + chr3.2:2099723-2099742 MS.gene058338:CDS 30.0%
CAGTGTAAAATGTTTCACAT+TGG - chr3.2:2097229-2097248 None:intergenic 30.0%
CGGAGCTTCTTAAAAATTTA+AGG - chr3.2:2098575-2098594 None:intergenic 30.0%
CTAATCCATGTCCATTTAAT+CGG - chr3.2:2099818-2099837 None:intergenic 30.0%
CTCTTTCAATGCTTAAAAGA+GGG - chr3.2:2097045-2097064 None:intergenic 30.0%
GACATTTGTTCAGATGTTAA+GGG - chr3.2:2097022-2097041 None:intergenic 30.0%
GGTATTAACAAGATATACTC+TGG + chr3.2:2098167-2098186 MS.gene058338:intron 30.0%
GTAATGGTCAAATGGAAATA+AGG - chr3.2:2097480-2097499 None:intergenic 30.0%
GTTTATAATATCGGTCGTAT+AGG + chr3.2:2097792-2097811 MS.gene058338:intron 30.0%
TAATCCATGTCCATTTAATC+GGG - chr3.2:2099817-2099836 None:intergenic 30.0%
TATACTCTGGACAAGTTATT+TGG + chr3.2:2098180-2098199 MS.gene058338:CDS 30.0%
TATTTCCATTTGACCATTAC+TGG + chr3.2:2097480-2097499 MS.gene058338:intron 30.0%
TCTCTTTCAATGCTTAAAAG+AGG - chr3.2:2097046-2097065 None:intergenic 30.0%
TCTTTCAATGCTTAAAAGAG+GGG - chr3.2:2097044-2097063 None:intergenic 30.0%
TGAGGATTAAGATTGAATGA+CGG - chr3.2:2097178-2097197 None:intergenic 30.0%
TTATGAATGTCTTTCTAGGT+TGG + chr3.2:2098639-2098658 MS.gene058338:intron 30.0%
TTTGGTATAGAAACAGCTAA+AGG + chr3.2:2099543-2099562 MS.gene058338:CDS 30.0%
! ACTATTTTCAGTTCATGATG+TGG + chr3.2:2097521-2097540 MS.gene058338:intron 30.0%
! GAAGCATTATCCAATAACTT+TGG - chr3.2:2097356-2097375 None:intergenic 30.0%
! TCAAAAAAGTCTGTTGCTTA+TGG - chr3.2:2098611-2098630 None:intergenic 30.0%
! TGGATTTTATCCCGATTAAA+TGG + chr3.2:2099804-2099823 MS.gene058338:CDS 30.0%
!! TTGATTCATTTGGCTGTTTT+CGG + chr3.2:2097380-2097399 MS.gene058338:CDS 30.0%
!!! TAGGTTGGTTCTTTTCTTAT+GGG + chr3.2:2098654-2098673 MS.gene058338:intron 30.0%
!!! TTCATCATCTTTTAGGATCT+AGG + chr3.2:2097828-2097847 MS.gene058338:intron 30.0%
AAACAGCTAAAGGTTTCAAG+TGG + chr3.2:2099553-2099572 MS.gene058338:CDS 35.0%
AACAAATTGCAGCTTCATCT+TGG + chr3.2:2096968-2096987 MS.gene058338:CDS 35.0%
AATATGTATGTCAGAGAGAG+AGG - chr3.2:2098300-2098319 None:intergenic 35.0%
ACACACACACATATATGAGA+AGG - chr3.2:2099427-2099446 None:intergenic 35.0%
ACATCACTTAGTAGTTATGC+TGG + chr3.2:2099653-2099672 MS.gene058338:CDS 35.0%
AGATGTTAAGGGCAAAATAG+AGG - chr3.2:2097011-2097030 None:intergenic 35.0%
AGGATGAGCTTGTGAATAAT+TGG + chr3.2:2099481-2099500 MS.gene058338:intron 35.0%
ATCAAATGTGTCCAAGTATC+TGG + chr3.2:2098707-2098726 MS.gene058338:CDS 35.0%
ATCGTAAATCCAACCAGTAA+TGG - chr3.2:2097496-2097515 None:intergenic 35.0%
ATGGTGAAAATGCTTATCTG+TGG + chr3.2:2099742-2099761 MS.gene058338:CDS 35.0%
CAAAATAGAGGAGACAGAAT+TGG - chr3.2:2096999-2097018 None:intergenic 35.0%
CGATTAAATGGACATGGATT+AGG + chr3.2:2099816-2099835 MS.gene058338:CDS 35.0%
CTGGTAACATTAGACAATGA+TGG + chr3.2:2098385-2098404 MS.gene058338:intron 35.0%
GAGAAGGGATCAAATTACAT+TGG + chr3.2:2099181-2099200 MS.gene058338:intron 35.0%
GGACATTTGTTCAGATGTTA+AGG - chr3.2:2097023-2097042 None:intergenic 35.0%
TAGAGACCATATTAGAAGGA+AGG - chr3.2:2098254-2098273 None:intergenic 35.0%
TATATGACAAAACTCACCGT+TGG + chr3.2:2099123-2099142 MS.gene058338:intron 35.0%
TCTGGTCATACTTTCATACA+AGG + chr3.2:2098087-2098106 MS.gene058338:intron 35.0%
TGAATAATTGGAGTTCTGCA+GGG + chr3.2:2099493-2099512 MS.gene058338:intron 35.0%
TTATCCCGATTAAATGGACA+TGG + chr3.2:2099810-2099829 MS.gene058338:CDS 35.0%
TTGTTGAATTGGATGCGATT+TGG + chr3.2:2099849-2099868 MS.gene058338:CDS 35.0%
! GTTGCCTTTTCCATCATATT+TGG + chr3.2:2099525-2099544 MS.gene058338:CDS 35.0%
! GTTTCAAGTGGCTTCTTATA+AGG + chr3.2:2099565-2099584 MS.gene058338:CDS 35.0%
! TCTTTTCTTATGGGATGGTT+TGG + chr3.2:2098663-2098682 MS.gene058338:CDS 35.0%
! TGCGAGTAGTTAATCGTTTT+TGG + chr3.2:2097449-2097468 MS.gene058338:intron 35.0%
! TTCCCTAGGTTGAAAAATAC+AGG - chr3.2:2097949-2097968 None:intergenic 35.0%
!! GATCAAGAGGTTTGTTGAAT+TGG + chr3.2:2099838-2099857 MS.gene058338:CDS 35.0%
!! GTCCTGTATTTTTCAACCTA+GGG + chr3.2:2097944-2097963 MS.gene058338:intron 35.0%
!! TGTCCTGTATTTTTCAACCT+AGG + chr3.2:2097943-2097962 MS.gene058338:intron 35.0%
!! TTGGTTCTTTTCTTATGGGA+TGG + chr3.2:2098658-2098677 MS.gene058338:CDS 35.0%
!!! CTAGGTTGGTTCTTTTCTTA+TGG + chr3.2:2098653-2098672 MS.gene058338:intron 35.0%
!!! CTGATTTTAGGCTTGTTATG+GGG + chr3.2:2099684-2099703 MS.gene058338:CDS 35.0%
!!! CTGGTGATTTTGCTGATTTT+AGG + chr3.2:2099672-2099691 MS.gene058338:CDS 35.0%
!!! GCTGATTTTAGGCTTGTTAT+GGG + chr3.2:2099683-2099702 MS.gene058338:CDS 35.0%
!!! TGCTGATTTTAGGCTTGTTA+TGG + chr3.2:2099682-2099701 MS.gene058338:CDS 35.0%
AAGTTATTTGGCCCTAGTGT+CGG + chr3.2:2098192-2098211 MS.gene058338:CDS 40.0%
AATTATCGCAGTCTATGCAG+CGG + chr3.2:2099449-2099468 MS.gene058338:intron 40.0%
ACATTGTACGCCATTACATG+AGG - chr3.2:2097732-2097751 None:intergenic 40.0%
AGGAAGGTCAAGGTAAAGAA+TGG - chr3.2:2098238-2098257 None:intergenic 40.0%
ATGCTTGAACTCAGTGTTAC+TGG + chr3.2:2098792-2098811 MS.gene058338:CDS 40.0%
CACTAACAACTGGTTACTTG+GGG + chr3.2:2098736-2098755 MS.gene058338:CDS 40.0%
CATCTAATCCACACACCAAT+AGG - chr3.2:2099786-2099805 None:intergenic 40.0%
CCATATTAGAAGGAAGGTCA+AGG - chr3.2:2098248-2098267 None:intergenic 40.0%
CCTTGACCTTCCTTCTAATA+TGG + chr3.2:2098245-2098264 MS.gene058338:CDS 40.0%
CTGAGGAACTTTCAATCCAA+CGG - chr3.2:2099142-2099161 None:intergenic 40.0%
CTTATGGAGAAGTTAGACGA+CGG - chr3.2:2098595-2098614 None:intergenic 40.0%
GCACTAACAACTGGTTACTT+GGG + chr3.2:2098735-2098754 MS.gene058338:CDS 40.0%
GGAATAAATGCAACTACTGC+AGG - chr3.2:2097885-2097904 None:intergenic 40.0%
GGTCAAGGTAAAGAATGGTT+TGG - chr3.2:2098233-2098252 None:intergenic 40.0%
GTGAATAATTGGAGTTCTGC+AGG + chr3.2:2099492-2099511 MS.gene058338:intron 40.0%
TAAGGCTAAACGTGACTTCA+CGG + chr3.2:2099583-2099602 MS.gene058338:CDS 40.0%
TCCAACCAGTAATGGTCAAA+TGG - chr3.2:2097488-2097507 None:intergenic 40.0%
TCCATTTGACCATTACTGGT+TGG + chr3.2:2097484-2097503 MS.gene058338:intron 40.0%
TGCACTAACAACTGGTTACT+TGG + chr3.2:2098734-2098753 MS.gene058338:CDS 40.0%
! AACTCAGTGTTACTGGGAAT+TGG + chr3.2:2098799-2098818 MS.gene058338:CDS 40.0%
! AATTGGCTCTTTGTTGTGCT+TGG + chr3.2:2098816-2098835 MS.gene058338:CDS 40.0%
! GTTGTGCTTGGCTTTCTAAT+AGG + chr3.2:2098828-2098847 MS.gene058338:CDS 40.0%
! TGATTCTGAAGACATACAGC+AGG + chr3.2:2097066-2097085 MS.gene058338:CDS 40.0%
! TGCTTGAACTCAGTGTTACT+GGG + chr3.2:2098793-2098812 MS.gene058338:CDS 40.0%
!! CTATTGGTGTGTGGATTAGA+TGG + chr3.2:2099784-2099803 MS.gene058338:CDS 40.0%
!! GTTCTCATATAAAAGCGCTG+AGG - chr3.2:2099159-2099178 None:intergenic 40.0%
!! TTGGCTGTTTTCGGTATTCT+CGG + chr3.2:2097389-2097408 MS.gene058338:CDS 40.0%
CTATGCAGCGGTGAATTGAT+AGG + chr3.2:2099461-2099480 MS.gene058338:intron 45.0%
GCTTGCATTGTTGGACCTAT+TGG + chr3.2:2099768-2099787 MS.gene058338:CDS 45.0%
TAGTCACATGACCGACACTA+GGG - chr3.2:2098206-2098225 None:intergenic 45.0%
TAGTGCAACAGCCAGATACT+TGG - chr3.2:2098721-2098740 None:intergenic 45.0%
TGACTGTTGTCTTCAGTTGC+AGG + chr3.2:2097313-2097332 MS.gene058338:intron 45.0%
TTGTTGGACCTATTGGTGTG+TGG + chr3.2:2099775-2099794 MS.gene058338:CDS 45.0%
! TGTCTCTGCTGCTTGTATCA+TGG + chr3.2:2099887-2099906 MS.gene058338:CDS 45.0%
!! GGACATGGATTAGGATCAAG+AGG + chr3.2:2099825-2099844 MS.gene058338:CDS 45.0%
!! GGCTTGTTATGGGGTATTAG+CGG + chr3.2:2099693-2099712 MS.gene058338:CDS 45.0%
!! TGGCTGTTTTCGGTATTCTC+GGG + chr3.2:2097390-2097409 MS.gene058338:CDS 45.0%
!!! CAGTTTTGAGCAGATTCCCT+AGG - chr3.2:2097963-2097982 None:intergenic 45.0%
AAGACCAAGGCAAAGGTGGA+AGG + chr3.2:2099624-2099643 MS.gene058338:CDS 50.0%
AGCTAGTAGAGCCAAGACCA+AGG + chr3.2:2099611-2099630 MS.gene058338:CDS 50.0%
CTAGTCACATGACCGACACT+AGG - chr3.2:2098207-2098226 None:intergenic 50.0%
CTGGCTGTTGCACTAACAAC+TGG + chr3.2:2098726-2098745 MS.gene058338:CDS 50.0%
CTGTGGATCGCTTGCATTGT+TGG + chr3.2:2099759-2099778 MS.gene058338:CDS 50.0%
GGGAGTCTAACAACGTTCAG+CGG + chr3.2:2098756-2098775 MS.gene058338:CDS 50.0%
TAGAGCCAAGACCAAGGCAA+AGG + chr3.2:2099617-2099636 MS.gene058338:CDS 50.0%
TTCCACCTTTGCCTTGGTCT+TGG - chr3.2:2099625-2099644 None:intergenic 50.0%
!! GGCTGTTTTCGGTATTCTCG+GGG + chr3.2:2097391-2097410 MS.gene058338:CDS 50.0%
AGAGAGGAACGAGCGAGGAA+GGG - chr3.2:2098284-2098303 None:intergenic 55.0%
AGCCAAGACCAAGGCAAAGG+TGG + chr3.2:2099620-2099639 MS.gene058338:CDS 55.0%
AGCGAGAGAGAGAGAGAGAG+AGG + chr3.2:2099036-2099055 MS.gene058338:intron 55.0%
GAAGCCTTCCACCTTTGCCT+TGG - chr3.2:2099631-2099650 None:intergenic 55.0%
GTCTAACAACGTTCAGCGGC+TGG + chr3.2:2098760-2098779 MS.gene058338:CDS 55.0%
CAGAGAGAGAGGAACGAGCG+AGG - chr3.2:2098289-2098308 None:intergenic 60.0%
GAGAGAGGAACGAGCGAGGA+AGG - chr3.2:2098285-2098304 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 2096947 2099947 2096947 ID=MS.gene058338
chr3.2 mRNA 2096947 2099947 2096947 ID=MS.gene058338.t1;Parent=MS.gene058338
chr3.2 exon 2096947 2097087 2096947 ID=MS.gene058338.t1.exon1;Parent=MS.gene058338.t1
chr3.2 CDS 2096947 2097087 2096947 ID=cds.MS.gene058338.t1;Parent=MS.gene058338.t1
chr3.2 exon 2097335 2097412 2097335 ID=MS.gene058338.t1.exon2;Parent=MS.gene058338.t1
chr3.2 CDS 2097335 2097412 2097335 ID=cds.MS.gene058338.t1;Parent=MS.gene058338.t1
chr3.2 exon 2098168 2098266 2098168 ID=MS.gene058338.t1.exon3;Parent=MS.gene058338.t1
chr3.2 CDS 2098168 2098266 2098168 ID=cds.MS.gene058338.t1;Parent=MS.gene058338.t1
chr3.2 exon 2098657 2098849 2098657 ID=MS.gene058338.t1.exon4;Parent=MS.gene058338.t1
chr3.2 CDS 2098657 2098849 2098657 ID=cds.MS.gene058338.t1;Parent=MS.gene058338.t1
chr3.2 exon 2099514 2099947 2099514 ID=MS.gene058338.t1.exon5;Parent=MS.gene058338.t1
chr3.2 CDS 2099514 2099947 2099514 ID=cds.MS.gene058338.t1;Parent=MS.gene058338.t1
Gene Sequence

>MS.gene058338

ATGGAGCATGATGTTGGAGTTAACAAATTGCAGCTTCATCTTGGTGCATCCAATTCTGTCTCCTCTATTTTGCCCTTAACATCTGAACAAATGTCCCCTCTTTTAAGCATTGAAAGAGATGATTCTGAAGACATACAGCAGGTATTTCTTTTAATAAGATGATGAAAGATTCAAAACATTTTTGTTGGATTTAATTCTTATGCATCGTCGATGTAAAGATTTTTTAAACCGTCATTCAATCTTAATCCTCAAATCATTAAAAATATATAAGATTTGTTGCCAATGTGAAACATTTTACACTGATAGTGTATCAAAATATTAATTGTACTATTTTTTGTTTTCTTATGGTAAATGGTGCTAGAGTAGTGACTGTTGTCTTCAGTTGCAGGAACCTAGTAAAGAATTGCCAAAGTTATTGGATAATGCTTCATATTTGATTCATTTGGCTGTTTTCGGTATTCTCGGGGTAATCTTCTATCCTCTGAACTTCAATGATAAAATATGCGAGTAGTTAATCGTTTTTGGTTAAGCCTTATTTCCATTTGACCATTACTGGTTGGATTTACGATATTTGACTATTTTCAGTTCATGATGTGGAAAATTTGACAATTGATTGTTTTTTGTGAACAAACATACATAACTTGAAGTTAACATGTTCATTATAGTACTCATATATAATAGAGAAATTTCCAACTTCAGCTTTATGATATTTGGACTGAAAACTTCTAGTTTAACTGTATGTCTCAATTACATAATAAATTGCTTTTGAAGTTGAAATAAAACCTCATGTAATGGCGTACAATGTTAGTTCTGTTCATTTGAAATCTTACTGATTTTCATTTTCTGTTTATAATATCGGTCGTATAGGAGACTTGATTATCTTCATCATCTTTTAGGATCTAGGCTTTAAATTTCAATTATTGTACGGACTTTTACCTGCAGTAGTTGCATTTATTCCATTGTATAAAGTATGAACAACAGTCTCTATTTGACATATGTCCTGTATTTTTCAACCTAGGGAATCTGCTCAAAACTGTCATGAACACAATTTCAATATAACTATACTATAGAATACAATGATTAGTTGTATGAATCTTGTTGCATTCCTTTATTTTTGGGCAATATAATGAACTTATGAATTCTGGTCATACTTTCATACAAGGATCTTAGTTTTTAGCATGATACTAATTCACTTGTTTTTGTTTTGCTATTATAATGCAGGTATTAACAAGATATACTCTGGACAAGTTATTTGGCCCTAGTGTCGGTCATGTGACTAGTGACCAAACCATTCTTTACCTTGACCTTCCTTCTAATATGGTCTCTACTTTGTTCCCTTCCTCGCTCGTTCCTCTCTCTCTGACATACATATTAGTTTTCTTATGTCCATTCCTTTGTATCATAATGATATCAATTAAGAAAAGTGTAGACTTAATTTCTGGTAACATTAGACAATGATGGTGTAAATTTACATGTATTTCAGTTGCACAGTAGTTTCAACTATAGTTTATGAGAAAAGGAAACTATAGTTTATGAGAAAAGAAAACGTTGAAAATTGAAATGCTCTACCTATGATTGATTATTTAAAATAGTGACTTTCTACATAAGTTTAAATAATTTATGCACCTTAAATTTTTAAGAAGCTCCGTCGTCTAACTTCTCCATAAGCAACAGACTTTTTTGATATAACTTTTATGAATGTCTTTCTAGGTTGGTTCTTTTCTTATGGGATGGTTTGGTGTTGTATTCAAAGAAGACATATCAAATGTGTCCAAGTATCTGGCTGTTGCACTAACAACTGGTTACTTGGGGAGTCTAACAACGTTCAGCGGCTGGAATCAGAAAATGCTTGAACTCAGTGTTACTGGGAATTGGCTCTTTGTTGTGCTTGGCTTTCTAATAGGTAATGTTAATTAAGAAGGAAAGTTTGATAAGTATGTTTTAGTGGTATGGTTTTCTCATTCAAAACTTGTCTGTTATGTCTCTTTCGCTTCACATTCAATATATATATATATATATATATATATATATATATATATATATATATATATATATACACACACACACACACACAGAGAGAGAGAGAGAGAGCGAGAGAGAGAGAGAGAGAGGATCAAATTACATCAGTGTAATACTTAGATATTGTCATACTGTTCAATAACTTTTTACGGATATCTATATGACAAAACTCACCGTTGGATTGAAAGTTCCTCAGCGCTTTTATATGAGAACTAGAGAAGGGATCAAATTACATTGGTGTTTACAGTTAACTCTGTATGCGCTTTTTATTTAATGACGTTAATCTCGACATATATCAATGATATATGAAATGTTTTTACATTTGCATAAAATTTTACAGAAATGATCAATATGATATAAACTTTCAATCAAATTGTAAGTTTTGTAATACAGGTGTCTTATAAAAAGTTTCTGATTAGTGCAACAATAATCATGTATTATAGGGATGTAATCTGATGCCTTCTCATATATGTGTGTGTGTGTAATTATCGCAGTCTATGCAGCGGTGAATTGATAGGATGAGCTTGTGAATAATTGGAGTTCTGCAGGGTTATTTCTTGTTGCCTTTTCCATCATATTTGGTATAGAAACAGCTAAAGGTTTCAAGTGGCTTCTTATAAGGCTAAACGTGACTTCACGGAGTGAAGCTAGTAGAGCCAAGACCAAGGCAAAGGTGGAAGGCTTCAAACATCACTTAGTAGTTATGCTGGTGATTTTGCTGATTTTAGGCTTGTTATGGGGTATTAGCGGTGTATTGATGATTGCTGAATTCAAGAATGGTGAAAATGCTTATCTGTGGATCGCTTGCATTGTTGGACCTATTGGTGTGTGGATTAGATGGATTTTATCCCGATTAAATGGACATGGATTAGGATCAAGAGGTTTGTTGAATTGGATGCGATTTGGAACTCTAACTGCAAATGTCTCTGCTGCTTGTATCATGGCTGCACTTGCTACAACAAAGATATATGTGAGTTTCTAG

Protein sequence

>MS.gene058338.t1

MEHDVGVNKLQLHLGASNSVSSILPLTSEQMSPLLSIERDDSEDIQQEPSKELPKLLDNASYLIHLAVFGILGVLTRYTLDKLFGPSVGHVTSDQTILYLDLPSNMVGSFLMGWFGVVFKEDISNVSKYLAVALTTGYLGSLTTFSGWNQKMLELSVTGNWLFVVLGFLIGLFLVAFSIIFGIETAKGFKWLLIRLNVTSRSEASRAKTKAKVEGFKHHLVVMLVILLILGLLWGISGVLMIAEFKNGENAYLWIACIVGPIGVWIRWILSRLNGHGLGSRGLLNWMRFGTLTANVSAACIMAALATTKIYVSF