AlfalfaGEDB | MS.gene89702

M. sativa cultivar XinJiangDaYe / MS.gene89702

KEGG: -
GO: -
PFAM: PF03168.16

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene89702.t1	XP_013447130.1	91.8	147	12	0	1	147	81	227	1.40E-68	268.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene89702.t1	A0A072TUP3	91.8	147	12	0	1	147	81	227	1.0e-68	268.9

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049413	MS.gene89702	0.81659	5.11E-52	-1.69E-46
MS.gene050961	MS.gene89702	0.839494	1.53E-57	-1.69E-46
MS.gene051699	MS.gene89702	0.804372	2.23E-49	-1.69E-46
MS.gene051959	MS.gene89702	0.870066	1.93E-66	-1.69E-46
MS.gene051960	MS.gene89702	0.866078	3.71E-65	-1.69E-46
MS.gene052053	MS.gene89702	0.854965	8.66E-62	-1.69E-46
MS.gene052533	MS.gene89702	0.802913	4.48E-49	-1.69E-46
MS.gene052559	MS.gene89702	0.839007	2.05E-57	-1.69E-46
MS.gene052560	MS.gene89702	0.806517	7.92E-50	-1.69E-46
MS.gene052570	MS.gene89702	0.819732	9.95E-53	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene89702.t1	MTR_8g099035	91.837	147	12	0	1	147	81	227	1.70e-95	275
MS.gene89702.t1	MTR_8g028475	38.393	112	68	1	19	130	93	203	2.80e-21	85.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene89702.t1	AT2G46150	34.513	113	73	1	19	130	93	205	3.52e-19	80.5
MS.gene89702.t1	AT3G54200	31.868	91	62	0	25	115	114	204	7.37e-11	58.5

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Find 31 sgRNAs with CRISPR-Local

Find 34 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCTAAGGCGCAAAGAA+CGG	0.530162	4.4:-5041892	MS.gene89702:CDS
AAATATTGAATATGTTCAAG+AGG	0.596331	4.4:-5041746	MS.gene89702:CDS
AATAGTGTTACCCTTATAAG+TGG	0.474862	4.4:-5042068	MS.gene89702:CDS
AATATGTTCAAGAGGTCAAT+TGG	0.340166	4.4:-5041738	MS.gene89702:CDS
AATGGAATTGATATTGGAGG+AGG	0.560744	4.4:-5041930	MS.gene89702:CDS
AATTCATTCACTTTCAGGTA+TGG	0.412565	4.4:-5041978	MS.gene89702:CDS
AATTCCATTATAGAAAACAG+TGG	0.718426	4.4:+5041944	None:intergenic
ACAACCACCGGGAAAAGCTA+AGG	0.582230	4.4:-5041904	MS.gene89702:CDS
ACACGTGGTGATACTTGTAT+TGG	0.390721	4.4:-5041666	MS.gene89702:CDS
AGCTTGTGGACAATCAAGAT+TGG	0.439651	4.4:-5041833	MS.gene89702:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATAGTGTTACCCTTATAAG+TGG	-	chr4.4:5041653-5041672	MS.gene89702:CDS	30.0%
AATATGTTCAAGAGGTCAAT+TGG	-	chr4.4:5041983-5042002	MS.gene89702:CDS	30.0%
AGTACTTATACGAAGATCAA+TGG	-	chr4.4:5041944-5041963	MS.gene89702:CDS	30.0%
ATATGTTCAAGAGGTCAATT+GGG	-	chr4.4:5041984-5042003	MS.gene89702:CDS	30.0%
CTTATAAGTGGAAGTTTCAA+CGG	-	chr4.4:5041665-5041684	MS.gene89702:CDS	30.0%
GTTGAAACTTCCACTTATAA+GGG	+	chr4.4:5041666-5041685	None:intergenic	30.0%
AATGGAATTGATATTGGAGG+AGG	-	chr4.4:5041791-5041810	MS.gene89702:CDS	35.0%
CGTTGAAACTTCCACTTATA+AGG	+	chr4.4:5041667-5041686	None:intergenic	35.0%
GATTAATGCGAAAAAGCTTG+TGG	-	chr4.4:5041874-5041893	MS.gene89702:CDS	35.0%
TATGTTCAAGAGGTCAATTG+GGG	-	chr4.4:5041985-5042004	MS.gene89702:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.4	gene	5041650	5042093	5041650	ID=MS.gene89702
chr4.4	mRNA	5041650	5042093	5041650	ID=MS.gene89702.t1;Parent=MS.gene89702
chr4.4	exon	5041650	5042093	5041650	ID=MS.gene89702.t1.exon1;Parent=MS.gene89702.t1
chr4.4	CDS	5041650	5042093	5041650	ID=cds.MS.gene89702.t1;Parent=MS.gene89702.t1

Gene Sequence

>MS.gene89702

ATGAATAGTGTTACCCTTATAAGTGGAAGTTTCAACGGTAGCAACGCTTCGAATAACGTTACAATTCTTGCTGATATGTCTGTGAAGAATACAAATTCATTCACTTTCAGGTATGGGGCAGCAAACACCACTGTTTTCTATAATGGAATTGATATTGGAGGAGGAATACAACCACCGGGAAAAGCTAAGGCGCAAAGAACGGCAAGGGTAAACGTGACATTGGTGATTAATGCGAAAAAGCTTGTGGACAATCAAGATTGGATTATTGATGTTAGAGATCAAGCTTTGAATTTCAGTACTTATACGAAGATCAATGGAAAAGTGAAAATATTGAATATGTTCAAGAGGTCAATTGGGGTTGAGTTGAATTGTACTAGTACATACGATATCCCAACAGGTTCAATCACACGTGGTGATACTTGTATTGGATTCATTAATATTTAG

Protein sequence

>MS.gene89702.t1

MNSVTLISGSFNGSNASNNVTILADMSVKNTNSFTFRYGAANTTVFYNGIDIGGGIQPPGKAKAQRTARVNVTLVINAKKLVDNQDWIIDVRDQALNFSTYTKINGKVKILNMFKRSIGVELNCTSTYDIPTGSITRGDTCIGFINI