Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91237.t1 | XP_003615964.1 | 92.6 | 189 | 13 | 1 | 1 | 188 | 1 | 189 | 2.30E-95 | 358.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91237.t1 | Q8GWL2 | 47.3 | 186 | 92 | 3 | 3 | 186 | 1 | 182 | 1.2e-36 | 154.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91237.t1 | G7KFJ1 | 92.6 | 189 | 13 | 1 | 1 | 188 | 1 | 189 | 1.7e-95 | 358.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene91237 | MS.gene87767 | PPI |
| MS.gene91237 | MS.gene87769 | PPI |
| MS.gene91237 | MS.gene87038 | PPI |
| MS.gene91237 | MS.gene42100 | PPI |
| MS.gene91237 | MS.gene42103 | PPI |
| MS.gene91237 | MS.gene87765 | PPI |
| MS.gene91237 | MS.gene42096 | PPI |
| MS.gene91237 | MS.gene87043 | PPI |
| MS.gene91237 | MS.gene42098 | PPI |
| MS.gene91237 | MS.gene42848 | PPI |
| MS.gene91237 | MS.gene87039 | PPI |
| MS.gene91237 | MS.gene87041 | PPI |
| MS.gene91237 | MS.gene87768 | PPI |
| MS.gene91237 | MS.gene42099 | PPI |
| MS.gene42098 | MS.gene91237 | PPI |
| MS.gene91237 | MS.gene87040 | PPI |
| MS.gene91237 | MS.gene87046 | PPI |
| MS.gene91237 | MS.gene42097 | PPI |
| MS.gene87043 | MS.gene91237 | PPI |
| MS.gene91237 | MS.gene87762 | PPI |
| MS.gene91237 | MS.gene42091 | PPI |
| MS.gene87767 | MS.gene91237 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91237.t1 | MTR_5g074560 | 92.593 | 189 | 13 | 1 | 1 | 188 | 1 | 189 | 4.15e-128 | 358 |
| MS.gene91237.t1 | MTR_5g074550 | 77.665 | 197 | 32 | 4 | 3 | 188 | 1 | 196 | 1.90e-102 | 293 |
| MS.gene91237.t1 | MTR_7g072270 | 33.721 | 172 | 104 | 5 | 20 | 183 | 32 | 201 | 4.28e-23 | 92.0 |
| MS.gene91237.t1 | MTR_7g072170 | 32.948 | 173 | 105 | 6 | 20 | 183 | 33 | 203 | 3.42e-21 | 87.4 |
| MS.gene91237.t1 | MTR_7g072120 | 32.370 | 173 | 106 | 6 | 20 | 183 | 33 | 203 | 2.02e-20 | 84.7 |
| MS.gene91237.t1 | MTR_7g072140 | 31.214 | 173 | 108 | 6 | 20 | 183 | 33 | 203 | 1.49e-18 | 80.1 |
| MS.gene91237.t1 | MTR_7g072270 | 34.328 | 134 | 79 | 4 | 20 | 145 | 32 | 164 | 1.89e-16 | 73.2 |
| MS.gene91237.t1 | MTR_7g071710 | 31.481 | 108 | 70 | 3 | 78 | 183 | 5 | 110 | 1.03e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91237.t1 | AT2G30270 | 47.312 | 186 | 92 | 3 | 3 | 186 | 1 | 182 | 6.39e-43 | 142 |
| MS.gene91237.t1 | AT3G11740 | 28.161 | 174 | 113 | 7 | 20 | 183 | 13 | 184 | 2.18e-12 | 63.2 |
Find 50 sgRNAs with CRISPR-Local
Find 147 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATCCCTGCTGGGGTATCTT+TGG | 0.283581 | 5.1:+57237961 | None:intergenic |
| ACATGGAACTCCGGCCTCTT+TGG | 0.293965 | 5.1:+57240070 | None:intergenic |
| GTTTGCGACTTAAAAGTTAT+TGG | 0.298838 | 5.1:-57238922 | MS.gene91237:CDS |
| GAGAAATGGTGATGAGAATA+AGG | 0.306353 | 5.1:-57239034 | MS.gene91237:CDS |
| ATTGGAATCAAGCAAGAGTT+TGG | 0.352102 | 5.1:+57239980 | None:intergenic |
| TTTCGCCTGACAATCTTTCC+TGG | 0.371331 | 5.1:-57237936 | MS.gene91237:CDS |
| CAGGCGAAATTTATCCCTGC+TGG | 0.373283 | 5.1:+57237950 | None:intergenic |
| CACCTTGAAAACCATGTTCC+CGG | 0.373489 | 5.1:+57240022 | None:intergenic |
| CATTTCTAAAGATGGTGATT+TGG | 0.375415 | 5.1:-57238875 | MS.gene91237:CDS |
| TGCTGGGGTATCTTTGGATA+AGG | 0.389702 | 5.1:+57237967 | None:intergenic |
| AAATGGAAACTTCAGAAGAT+TGG | 0.396214 | 5.1:-57240142 | MS.gene91237:CDS |
| TTGGAATCAAGCAAGAGTTT+GGG | 0.419781 | 5.1:+57239981 | None:intergenic |
| TTTGGATAAGGTTGTACATC+AGG | 0.420788 | 5.1:+57237979 | None:intergenic |
| ATCAAGCAAGAGTTTGGGAT+TGG | 0.427325 | 5.1:+57239986 | None:intergenic |
| AATGGAAACTTCAGAAGATT+GGG | 0.430383 | 5.1:-57240141 | MS.gene91237:CDS |
| GATTGGGATGTGTTCATCTT+CGG | 0.437653 | 5.1:+57240106 | None:intergenic |
| GGAGAATAGAGGATTATCAT+TGG | 0.453902 | 5.1:+57239962 | None:intergenic |
| TGGAAATGTTACAAGAGAAA+TGG | 0.454502 | 5.1:-57239048 | MS.gene91237:CDS |
| TTCTAAAGATGGTGATTTGG+TGG | 0.461988 | 5.1:-57238872 | MS.gene91237:CDS |
| CTAACGTTCACTGATGCATC+CGG | 0.465094 | 5.1:-57240041 | MS.gene91237:CDS |
| CGGATGCATCAGTGAACGTT+AGG | 0.475705 | 5.1:+57240042 | None:intergenic |
| TTGGAACAGAAGAGATCGAT+TGG | 0.479549 | 5.1:+57240089 | None:intergenic |
| TTCGCCTGACAATCTTTCCT+GGG | 0.479694 | 5.1:-57237935 | MS.gene91237:CDS |
| TCAAGCAAGAGTTTGGGATT+GGG | 0.489749 | 5.1:+57239987 | None:intergenic |
| TGATCCCAGGAAAGATTGTC+AGG | 0.502195 | 5.1:+57237931 | None:intergenic |
| CACTGATGCATCCGGGAACA+TGG | 0.502309 | 5.1:-57240033 | MS.gene91237:CDS |
| ACTAACGTGACGACGGTGGA+TGG | 0.504748 | 5.1:+57239941 | None:intergenic |
| CTCTTCTGTTCCAAAGAGGC+CGG | 0.506612 | 5.1:-57240080 | MS.gene91237:CDS |
| TCAGAAGATTGGGAGTATAC+AGG | 0.511784 | 5.1:-57240131 | MS.gene91237:CDS |
| AGATGGTGATTTGGTGGCAC+AGG | 0.523496 | 5.1:-57238866 | MS.gene91237:intron |
| AGGCGAAATTTATCCCTGCT+GGG | 0.524089 | 5.1:+57237951 | None:intergenic |
| CATAGATCATGGTCTTATTG+TGG | 0.528955 | 5.1:-57237910 | MS.gene91237:CDS |
| TGGAACAGAAGAGATCGATT+GGG | 0.531250 | 5.1:+57240090 | None:intergenic |
| TCATGCAGCATTTCTAAAGA+TGG | 0.534516 | 5.1:-57238883 | MS.gene91237:CDS |
| AGCAAGAGTTTGGGATTGGG+TGG | 0.555142 | 5.1:+57239990 | None:intergenic |
| AGACCATGATCTATGATCCC+AGG | 0.556122 | 5.1:+57237918 | None:intergenic |
| TTTCCTGGGATCATAGATCA+TGG | 0.561295 | 5.1:-57237921 | MS.gene91237:CDS |
| TTATCCAAAGATACCCCAGC+AGG | 0.572022 | 5.1:-57237965 | MS.gene91237:CDS |
| CGACGGTGGATGGAGAATAG+AGG | 0.586292 | 5.1:+57239951 | None:intergenic |
| AGCTTGTGTTAAAAGTAAAG+AGG | 0.588306 | 5.1:-57239011 | MS.gene91237:CDS |
| CGATCTCTTCTGTTCCAAAG+AGG | 0.591924 | 5.1:-57240084 | MS.gene91237:CDS |
| TAGGATGCCACATGGAACTC+CGG | 0.593109 | 5.1:+57240061 | None:intergenic |
| TAACGTTCACTGATGCATCC+GGG | 0.593676 | 5.1:-57240040 | MS.gene91237:CDS |
| ATGCTGCATGATCTCATGAA+AGG | 0.599728 | 5.1:+57238895 | None:intergenic |
| AGAGACTAACGTGACGACGG+TGG | 0.605276 | 5.1:+57239937 | None:intergenic |
| GGCGAAATTTATCCCTGCTG+GGG | 0.649224 | 5.1:+57237952 | None:intergenic |
| CAGAGAGACTAACGTGACGA+CGG | 0.675593 | 5.1:+57239934 | None:intergenic |
| TATCCAAAGATACCCCAGCA+GGG | 0.680714 | 5.1:-57237964 | MS.gene91237:CDS |
| GTGAACGTTAGGATGCCACA+TGG | 0.693955 | 5.1:+57240053 | None:intergenic |
| AAAGAGGCCGGAGTTCCATG+TGG | 0.732945 | 5.1:-57240068 | MS.gene91237:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAAAAAGAAAGAAATTG+AGG | - | chr5.1:57238907-57238926 | MS.gene91237:CDS | 15.0% |
| !! | ATAAATCATATGAAAAAATG+TGG | + | chr5.1:57238277-57238296 | None:intergenic | 15.0% |
| !!! | TAGAAAAATAAACATTGATT+TGG | - | chr5.1:57239312-57239331 | MS.gene91237:intron | 15.0% |
| !!! | TGAAATATGTTGTTTTATTT+TGG | - | chr5.1:57238938-57238957 | MS.gene91237:CDS | 15.0% |
| !!! | TTGTTTGTAATATTTTTGAA+AGG | - | chr5.1:57240136-57240155 | MS.gene91237:CDS | 15.0% |
| !! | ACCAATAGTAATCTAAAAAA+TGG | + | chr5.1:57238380-57238399 | None:intergenic | 20.0% |
| !!! | TAAATATTTTTTCTAGGAGA+TGG | + | chr5.1:57238888-57238907 | None:intergenic | 20.0% |
| ! | AAAAAGAGAGGAATCAAATT+TGG | - | chr5.1:57239861-57239880 | MS.gene91237:intron | 25.0% |
| ! | ACAAATGTCTTAAACTCATT+TGG | + | chr5.1:57239505-57239524 | None:intergenic | 25.0% |
| ! | ACTGCGTATAATATATCAAT+TGG | - | chr5.1:57239722-57239741 | MS.gene91237:intron | 25.0% |
| ! | GAAAGTTATTATGATCACTT+TGG | - | chr5.1:57238501-57238520 | MS.gene91237:intron | 25.0% |
| ! | GACATTTGTGTATATTGAAT+AGG | - | chr5.1:57239516-57239535 | MS.gene91237:intron | 25.0% |
| ! | TGATATATTATACGCAGTTT+GGG | + | chr5.1:57239720-57239739 | None:intergenic | 25.0% |
| ! | TTGATATATTATACGCAGTT+TGG | + | chr5.1:57239721-57239740 | None:intergenic | 25.0% |
| !!! | GCCATTTTTTAGATTACTAT+TGG | - | chr5.1:57238376-57238395 | MS.gene91237:intron | 25.0% |
| !!! | TCAAAGAAGTGTTTAAAGAT+AGG | - | chr5.1:57238316-57238335 | MS.gene91237:intron | 25.0% |
| !!! | TTGTTTTATTTTGGTAGAGT+GGG | - | chr5.1:57238947-57238966 | MS.gene91237:CDS | 25.0% |
| !!! | TTTTTCGTCAATTAGTCTAT+TGG | - | chr5.1:57239389-57239408 | MS.gene91237:intron | 25.0% |
| AAATGGAAACTTCAGAAGAT+TGG | - | chr5.1:57237879-57237898 | MS.gene91237:CDS | 30.0% | |
| AATGGAAACTTCAGAAGATT+GGG | - | chr5.1:57237880-57237899 | MS.gene91237:CDS | 30.0% | |
| ACAGTACAGTTATGTATAGA+GGG | - | chr5.1:57239925-57239944 | MS.gene91237:intron | 30.0% | |
| AGCTTGTGTTAAAAGTAAAG+AGG | - | chr5.1:57239010-57239029 | MS.gene91237:CDS | 30.0% | |
| AGTTGAAACATGAAAAAGAG+AGG | - | chr5.1:57239849-57239868 | MS.gene91237:intron | 30.0% | |
| CGTTGAAAAATGTGAAATTG+TGG | + | chr5.1:57238221-57238240 | None:intergenic | 30.0% | |
| GATAAGAAGTAGAGTAATAC+AGG | - | chr5.1:57238575-57238594 | MS.gene91237:intron | 30.0% | |
| GTATTTGTGCTTCATAGTAT+AGG | - | chr5.1:57238744-57238763 | MS.gene91237:intron | 30.0% | |
| GTCTTCTATCATGTCTTTAT+GGG | - | chr5.1:57238445-57238464 | MS.gene91237:intron | 30.0% | |
| GTTTGCGACTTAAAAGTTAT+TGG | - | chr5.1:57239099-57239118 | MS.gene91237:intron | 30.0% | |
| TACAGTACAGTTATGTATAG+AGG | - | chr5.1:57239924-57239943 | MS.gene91237:intron | 30.0% | |
| TCATAGTATGTGATTAAGCA+AGG | - | chr5.1:57238834-57238853 | MS.gene91237:intron | 30.0% | |
| TGGAAATGTTACAAGAGAAA+TGG | - | chr5.1:57238973-57238992 | MS.gene91237:CDS | 30.0% | |
| TGTATATTGAATAGGCAACA+AGG | - | chr5.1:57239524-57239543 | MS.gene91237:intron | 30.0% | |
| TGTCTTCTATCATGTCTTTA+TGG | - | chr5.1:57238444-57238463 | MS.gene91237:intron | 30.0% | |
| ! | ACTTCTTTGATCAAAAGTGT+CGG | + | chr5.1:57238306-57238325 | None:intergenic | 30.0% |
| ! | ATTTTCAATTTTTCGCTGCA+AGG | + | chr5.1:57239464-57239483 | None:intergenic | 30.0% |
| ! | CAAGGACATTTAATGTTTTG+GGG | + | chr5.1:57239446-57239465 | None:intergenic | 30.0% |
| ! | CATTTCTAAAGATGGTGATT+TGG | - | chr5.1:57239146-57239165 | MS.gene91237:intron | 30.0% |
| ! | GAAGTGTTTAAAGATAGGTT+TGG | - | chr5.1:57238321-57238340 | MS.gene91237:intron | 30.0% |
| ! | GCAAGGACATTTAATGTTTT+GGG | + | chr5.1:57239447-57239466 | None:intergenic | 30.0% |
| ! | TGCAAGGACATTTAATGTTT+TGG | + | chr5.1:57239448-57239467 | None:intergenic | 30.0% |
| !! | AACATTGATTTGGTTAGACA+TGG | - | chr5.1:57239322-57239341 | MS.gene91237:intron | 30.0% |
| !! | AAGGACATTTAATGTTTTGG+GGG | + | chr5.1:57239445-57239464 | None:intergenic | 30.0% |
| !! | GATCACTTTGGTGTATTTTA+GGG | - | chr5.1:57238513-57238532 | MS.gene91237:intron | 30.0% |
| !! | TATCGGTTTAAAGAGTAGTA+TGG | + | chr5.1:57239792-57239811 | None:intergenic | 30.0% |
| !! | TGATCACTTTGGTGTATTTT+AGG | - | chr5.1:57238512-57238531 | MS.gene91237:intron | 30.0% |
| !! | TTACACAAGAAGCTTTTTCT+AGG | + | chr5.1:57239649-57239668 | None:intergenic | 30.0% |
| !!! | AAGTTAGAAGTGTTTTTTGC+TGG | - | chr5.1:57239057-57239076 | MS.gene91237:CDS | 30.0% |
| !!! | GGAACATGTTTTAGTTGTAA+TGG | - | chr5.1:57239343-57239362 | MS.gene91237:intron | 30.0% |
| !!! | GTTGTTTTATTTTGGTAGAG+TGG | - | chr5.1:57238946-57238965 | MS.gene91237:CDS | 30.0% |
| AATCACATACTATGAAGCAC+CGG | + | chr5.1:57238829-57238848 | None:intergenic | 35.0% | |
| ACATACACAGAGTTTGGAAA+GGG | + | chr5.1:57239754-57239773 | None:intergenic | 35.0% | |
| ATATTATACGCAGTTTGGGA+AGG | + | chr5.1:57239716-57239735 | None:intergenic | 35.0% | |
| ATTGGAATCAAGCAAGAGTT+TGG | + | chr5.1:57238044-57238063 | None:intergenic | 35.0% | |
| GCTTCTTGTGTAAAAACAAC+AGG | - | chr5.1:57239656-57239675 | MS.gene91237:intron | 35.0% | |
| GGAGAATAGAGGATTATCAT+TGG | + | chr5.1:57238062-57238081 | None:intergenic | 35.0% | |
| TATGAAGCACAAATACTCCT+TGG | + | chr5.1:57238740-57238759 | None:intergenic | 35.0% | |
| TATTATACGCAGTTTGGGAA+GGG | + | chr5.1:57239715-57239734 | None:intergenic | 35.0% | |
| TTGGAATCAAGCAAGAGTTT+GGG | + | chr5.1:57238043-57238062 | None:intergenic | 35.0% | |
| TTTCCAAACTCTGTGTATGT+GGG | - | chr5.1:57239754-57239773 | MS.gene91237:intron | 35.0% | |
| TTTGGATAAGGTTGTACATC+AGG | + | chr5.1:57240045-57240064 | None:intergenic | 35.0% | |
| ! | AATTAGTCTATTGGCCAGTA+GGG | - | chr5.1:57239398-57239417 | MS.gene91237:intron | 35.0% |
| ! | GAGAAATGGTGATGAGAATA+AGG | - | chr5.1:57238987-57239006 | MS.gene91237:CDS | 35.0% |
| ! | TCATGCAGCATTTCTAAAGA+TGG | - | chr5.1:57239138-57239157 | MS.gene91237:intron | 35.0% |
| ! | TTCTAAAGATGGTGATTTGG+TGG | - | chr5.1:57239149-57239168 | MS.gene91237:intron | 35.0% |
| !! | CATAGATCATGGTCTTATTG+TGG | - | chr5.1:57240111-57240130 | MS.gene91237:CDS | 35.0% |
| AAGATTGGGTGACTTTGTAG+AGG | + | chr5.1:57238802-57238821 | None:intergenic | 40.0% | |
| ACATGTAATTACATGCGTCG+TGG | + | chr5.1:57238350-57238369 | None:intergenic | 40.0% | |
| AGATTGGGTGACTTTGTAGA+GGG | + | chr5.1:57238801-57238820 | None:intergenic | 40.0% | |
| AGTGATATGTATCTGACACC+AGG | - | chr5.1:57238703-57238722 | MS.gene91237:intron | 40.0% | |
| ATGCTGCATGATCTCATGAA+AGG | + | chr5.1:57239129-57239148 | None:intergenic | 40.0% | |
| ATTATACGCAGTTTGGGAAG+GGG | + | chr5.1:57239714-57239733 | None:intergenic | 40.0% | |
| CAACAAGGAGAGTAGAATGT+TGG | - | chr5.1:57239539-57239558 | MS.gene91237:intron | 40.0% | |
| CACATACACAGAGTTTGGAA+AGG | + | chr5.1:57239755-57239774 | None:intergenic | 40.0% | |
| CATACACAGAGTTTGGAAAG+GGG | + | chr5.1:57239753-57239772 | None:intergenic | 40.0% | |
| CTCGTCTAAACTGATGCTAT+CGG | + | chr5.1:57239809-57239828 | None:intergenic | 40.0% | |
| CTTTCCAAACTCTGTGTATG+TGG | - | chr5.1:57239753-57239772 | MS.gene91237:intron | 40.0% | |
| GATTGGGATGTGTTCATCTT+CGG | + | chr5.1:57237918-57237937 | None:intergenic | 40.0% | |
| GCACAAATACTCCTTGGATT+AGG | + | chr5.1:57238734-57238753 | None:intergenic | 40.0% | |
| GTCGTAGGTGTAAGGAAAAT+TGG | - | chr5.1:57238858-57238877 | MS.gene91237:intron | 40.0% | |
| TCATATGTGTCGTATCGTGT+TGG | - | chr5.1:57238673-57238692 | MS.gene91237:intron | 40.0% | |
| TCTTTATGGGTGCATCAACA+AGG | - | chr5.1:57238458-57238477 | MS.gene91237:intron | 40.0% | |
| TGGAACAGAAGAGATCGATT+GGG | + | chr5.1:57237934-57237953 | None:intergenic | 40.0% | |
| TTGGAACAGAAGAGATCGAT+TGG | + | chr5.1:57237935-57237954 | None:intergenic | 40.0% | |
| TTTCCTGGGATCATAGATCA+TGG | - | chr5.1:57240100-57240119 | MS.gene91237:CDS | 40.0% | |
| ! | AAACTCATTTGGTAGCTGCA+AGG | + | chr5.1:57239494-57239513 | None:intergenic | 40.0% |
| ! | ATCAAGCAAGAGTTTGGGAT+TGG | + | chr5.1:57238038-57238057 | None:intergenic | 40.0% |
| ! | ATCACATACTATGAAGCACC+GGG | + | chr5.1:57238828-57238847 | None:intergenic | 40.0% |
| ! | CAATTAGTCTATTGGCCAGT+AGG | - | chr5.1:57239397-57239416 | MS.gene91237:intron | 40.0% |
| ! | TCAAGCAAGAGTTTGGGATT+GGG | + | chr5.1:57238037-57238056 | None:intergenic | 40.0% |
| ! | TCAGAAGATTGGGAGTATAC+AGG | - | chr5.1:57237890-57237909 | MS.gene91237:CDS | 40.0% |
| !!! | TATTTTGGTAGAGTGGGACT+TGG | - | chr5.1:57238953-57238972 | MS.gene91237:CDS | 40.0% |
| AAGTCACCCAATCTTTGTCC+CGG | - | chr5.1:57238807-57238826 | MS.gene91237:intron | 45.0% | |
| ACCAGGACATACCTAATCCA+AGG | - | chr5.1:57238720-57238739 | MS.gene91237:intron | 45.0% | |
| AGACCATGATCTATGATCCC+AGG | + | chr5.1:57240106-57240125 | None:intergenic | 45.0% | |
| AGGATCGAGTGACTTTAACG+AGG | - | chr5.1:57238478-57238497 | MS.gene91237:intron | 45.0% | |
| AGGCGAAATTTATCCCTGCT+GGG | + | chr5.1:57240073-57240092 | None:intergenic | 45.0% | |
| CACCTTGAAAACCATGTTCC+CGG | + | chr5.1:57238002-57238021 | None:intergenic | 45.0% | |
| CGATCTCTTCTGTTCCAAAG+AGG | - | chr5.1:57237937-57237956 | MS.gene91237:CDS | 45.0% | |
| CTAACGTTCACTGATGCATC+CGG | - | chr5.1:57237980-57237999 | MS.gene91237:CDS | 45.0% | |
| GACGTATTGTGACCATGTCT+GGG | + | chr5.1:57238611-57238630 | None:intergenic | 45.0% | |
| GATTGGGTGACTTTGTAGAG+GGG | + | chr5.1:57238800-57238819 | None:intergenic | 45.0% | |
| GGATCGAGTGACTTTAACGA+GGG | - | chr5.1:57238479-57238498 | MS.gene91237:intron | 45.0% | |
| TAACGTTCACTGATGCATCC+GGG | - | chr5.1:57237981-57238000 | MS.gene91237:CDS | 45.0% | |
| TATCCAAAGATACCCCAGCA+GGG | - | chr5.1:57240057-57240076 | MS.gene91237:CDS | 45.0% | |
| TATTGGCCAGTAGGGAATTG+CGG | - | chr5.1:57239406-57239425 | MS.gene91237:intron | 45.0% | |
| TGATCCCAGGAAAGATTGTC+AGG | + | chr5.1:57240093-57240112 | None:intergenic | 45.0% | |
| TTATCCAAAGATACCCCAGC+AGG | - | chr5.1:57240056-57240075 | MS.gene91237:CDS | 45.0% | |
| TTCGCCTGACAATCTTTCCT+GGG | - | chr5.1:57240086-57240105 | MS.gene91237:CDS | 45.0% | |
| TTTCGCCTGACAATCTTTCC+TGG | - | chr5.1:57240085-57240104 | MS.gene91237:CDS | 45.0% | |
| ! | ATCCGGGAACATGGTTTTCA+AGG | - | chr5.1:57237997-57238016 | MS.gene91237:intron | 45.0% |
| ! | TCCTTGGATTAGGTATGTCC+TGG | + | chr5.1:57238724-57238743 | None:intergenic | 45.0% |
| ! | TGCTGGGGTATCTTTGGATA+AGG | + | chr5.1:57240057-57240076 | None:intergenic | 45.0% |
| !! | GTGATTAAGCAAGGTGTCGT+AGG | - | chr5.1:57238843-57238862 | MS.gene91237:intron | 45.0% |
| !!! | TTTTTATAAATATTTTTTCT+AGG | + | chr5.1:57238894-57238913 | None:intergenic | 5.0% |
| ATTGGCCAGTAGGGAATTGC+GGG | - | chr5.1:57239407-57239426 | MS.gene91237:intron | 50.0% | |
| CAGAGAGACTAACGTGACGA+CGG | + | chr5.1:57238090-57238109 | None:intergenic | 50.0% | |
| CAGGCGAAATTTATCCCTGC+TGG | + | chr5.1:57240074-57240093 | None:intergenic | 50.0% | |
| CGACGTATTGTGACCATGTC+TGG | + | chr5.1:57238612-57238631 | None:intergenic | 50.0% | |
| CGGATGCATCAGTGAACGTT+AGG | + | chr5.1:57237982-57238001 | None:intergenic | 50.0% | |
| CTCAACCGAATCAACCGTCT+CGG | + | chr5.1:57238146-57238165 | None:intergenic | 50.0% | |
| CTCTTCTGTTCCAAAGAGGC+CGG | - | chr5.1:57237941-57237960 | MS.gene91237:CDS | 50.0% | |
| GCTCCCACATACACAGAGTT+TGG | + | chr5.1:57239760-57239779 | None:intergenic | 50.0% | |
| GGCGAAATTTATCCCTGCTG+GGG | + | chr5.1:57240072-57240091 | None:intergenic | 50.0% | |
| GGTGTGGTGCGTGTAAAAGA+AGG | + | chr5.1:57238123-57238142 | None:intergenic | 50.0% | |
| GTGAACGTTAGGATGCCACA+TGG | + | chr5.1:57237971-57237990 | None:intergenic | 50.0% | |
| TAGGATGCCACATGGAACTC+CGG | + | chr5.1:57237963-57237982 | None:intergenic | 50.0% | |
| TCAACCGAATCAACCGTCTC+GGG | + | chr5.1:57238145-57238164 | None:intergenic | 50.0% | |
| ! | AGCAAGAGTTTGGGATTGGG+TGG | + | chr5.1:57238034-57238053 | None:intergenic | 50.0% |
| ! | GTGTCGTATCGTGTTGGTGA+TGG | - | chr5.1:57238679-57238698 | MS.gene91237:intron | 50.0% |
| ! | TATCCCTGCTGGGGTATCTT+TGG | + | chr5.1:57240063-57240082 | None:intergenic | 50.0% |
| !! | AGATGGTGATTTGGTGGCAC+AGG | - | chr5.1:57239155-57239174 | MS.gene91237:intron | 50.0% |
| !! | AGCAAGGTGTCGTAGGTGTA+AGG | - | chr5.1:57238850-57238869 | MS.gene91237:intron | 50.0% |
| !! | GAAGCACCGGGACAAAGATT+GGG | + | chr5.1:57238816-57238835 | None:intergenic | 50.0% |
| !! | TGAAGCACCGGGACAAAGAT+TGG | + | chr5.1:57238817-57238836 | None:intergenic | 50.0% |
| AAAGAGGCCGGAGTTCCATG+TGG | - | chr5.1:57237953-57237972 | MS.gene91237:CDS | 55.0% | |
| ACACCCCGAGACGGTTGATT+CGG | - | chr5.1:57238138-57238157 | MS.gene91237:intron | 55.0% | |
| ACATGGAACTCCGGCCTCTT+TGG | + | chr5.1:57237954-57237973 | None:intergenic | 55.0% | |
| ACTAACGTGACGACGGTGGA+TGG | + | chr5.1:57238083-57238102 | None:intergenic | 55.0% | |
| AGAGACTAACGTGACGACGG+TGG | + | chr5.1:57238087-57238106 | None:intergenic | 55.0% | |
| CAACCGAATCAACCGTCTCG+GGG | + | chr5.1:57238144-57238163 | None:intergenic | 55.0% | |
| CACTGATGCATCCGGGAACA+TGG | - | chr5.1:57237988-57238007 | MS.gene91237:intron | 55.0% | |
| CGACGGTGGATGGAGAATAG+AGG | + | chr5.1:57238073-57238092 | None:intergenic | 55.0% | |
| GGAGCTATGAAGCCCAGACA+TGG | - | chr5.1:57238596-57238615 | MS.gene91237:intron | 55.0% | |
| TCGAACCCGCAATTCCCTAC+TGG | + | chr5.1:57239415-57239434 | None:intergenic | 55.0% | |
| TGGGAAGGGGTCACACTGTT+TGG | + | chr5.1:57239701-57239720 | None:intergenic | 55.0% | |
| GAATCAACCGTCTCGGGGTG+TGG | + | chr5.1:57238139-57238158 | None:intergenic | 60.0% | |
| ACACGCACCACACCCCGAGA+CGG | - | chr5.1:57238129-57238148 | MS.gene91237:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 57237875 | 57240168 | 57237875 | ID=MS.gene91237 |
| chr5.1 | mRNA | 57237875 | 57240168 | 57237875 | ID=MS.gene91237.t1;Parent=MS.gene91237 |
| chr5.1 | exon | 57239947 | 57240168 | 57239947 | ID=MS.gene91237.t1.exon1;Parent=MS.gene91237.t1 |
| chr5.1 | CDS | 57239947 | 57240168 | 57239947 | ID=cds.MS.gene91237.t1;Parent=MS.gene91237.t1 |
| chr5.1 | exon | 57238867 | 57239079 | 57238867 | ID=MS.gene91237.t1.exon2;Parent=MS.gene91237.t1 |
| chr5.1 | CDS | 57238867 | 57239079 | 57238867 | ID=cds.MS.gene91237.t1;Parent=MS.gene91237.t1 |
| chr5.1 | exon | 57237875 | 57238006 | 57237875 | ID=MS.gene91237.t1.exon3;Parent=MS.gene91237.t1 |
| chr5.1 | CDS | 57237875 | 57238006 | 57237875 | ID=cds.MS.gene91237.t1;Parent=MS.gene91237.t1 |
| Gene Sequence |
| Protein sequence |
