Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91238.t1 | AES98921.1 | 89.6 | 154 | 15 | 1 | 1 | 154 | 1 | 153 | 1.60E-73 | 285.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91238.t1 | Q8GWL2 | 44.7 | 141 | 63 | 3 | 14 | 154 | 16 | 141 | 8.3e-23 | 108.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91238.t1 | G7KFJ0 | 89.6 | 154 | 15 | 1 | 1 | 154 | 1 | 153 | 1.1e-73 | 285.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene42848 | MS.gene91238 | PPI |
| MS.gene42103 | MS.gene91238 | PPI |
| MS.gene87038 | MS.gene91238 | PPI |
| MS.gene42098 | MS.gene91238 | PPI |
| MS.gene87043 | MS.gene91238 | PPI |
| MS.gene87765 | MS.gene91238 | PPI |
| MS.gene87767 | MS.gene91238 | PPI |
| MS.gene87039 | MS.gene91238 | PPI |
| MS.gene87046 | MS.gene91238 | PPI |
| MS.gene42099 | MS.gene91238 | PPI |
| MS.gene42091 | MS.gene91238 | PPI |
| MS.gene42100 | MS.gene91238 | PPI |
| MS.gene87040 | MS.gene91238 | PPI |
| MS.gene42096 | MS.gene91238 | PPI |
| MS.gene87768 | MS.gene91238 | PPI |
| MS.gene87041 | MS.gene91238 | PPI |
| MS.gene42097 | MS.gene91238 | PPI |
| MS.gene87762 | MS.gene91238 | PPI |
| MS.gene87769 | MS.gene91238 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91238.t1 | MTR_5g074550 | 89.610 | 154 | 15 | 1 | 1 | 154 | 1 | 153 | 1.06e-99 | 285 |
| MS.gene91238.t1 | MTR_5g074560 | 73.684 | 152 | 29 | 2 | 3 | 154 | 6 | 146 | 3.98e-76 | 225 |
| MS.gene91238.t1 | MTR_7g072120 | 34.028 | 144 | 81 | 4 | 17 | 155 | 33 | 167 | 2.25e-18 | 78.6 |
| MS.gene91238.t1 | MTR_7g072170 | 33.333 | 144 | 82 | 4 | 17 | 155 | 33 | 167 | 2.57e-18 | 78.6 |
| MS.gene91238.t1 | MTR_7g072270 | 34.028 | 144 | 80 | 5 | 17 | 155 | 32 | 165 | 5.87e-18 | 76.3 |
| MS.gene91238.t1 | MTR_7g072270 | 33.333 | 144 | 81 | 5 | 17 | 155 | 32 | 165 | 4.18e-17 | 75.1 |
| MS.gene91238.t1 | MTR_7g072140 | 31.250 | 144 | 85 | 4 | 17 | 155 | 33 | 167 | 3.84e-15 | 70.1 |
| MS.gene91238.t1 | MTR_7g072250 | 31.496 | 127 | 69 | 4 | 34 | 155 | 83 | 196 | 8.64e-12 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91238.t1 | AT2G30270 | 39.007 | 141 | 71 | 2 | 14 | 154 | 16 | 141 | 2.39e-23 | 90.9 |
| MS.gene91238.t1 | AT5G01750 | 27.778 | 144 | 90 | 5 | 17 | 155 | 37 | 171 | 1.81e-11 | 59.3 |
Find 41 sgRNAs with CRISPR-Local
Find 157 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTTGCGACTTAAAAGTAAT+TGG | 0.281487 | 5.1:-57232101 | MS.gene91238:CDS |
| CTTTGGAGACGAAGAGGAAT+TGG | 0.284571 | 5.1:+57233524 | None:intergenic |
| TGGGACTTGGAAATGTTATA+AGG | 0.293104 | 5.1:-57232240 | MS.gene91238:CDS |
| GGGAAGTGGTGATGAGAATA+AGG | 0.296657 | 5.1:-57232219 | MS.gene91238:CDS |
| AGCAAGAGTTTGGTATCCTT+TGG | 0.337774 | 5.1:+57233507 | None:intergenic |
| GGAAATGGGAACTTCAGATT+TGG | 0.359813 | 5.1:-57233688 | None:intergenic |
| CATTTCTAAAGATGGTGATT+TGG | 0.375415 | 5.1:-57232054 | MS.gene91238:CDS |
| ATTGGAATCAAGCAAGAGTT+TGG | 0.382566 | 5.1:+57233497 | None:intergenic |
| AATTACCCGAGTTGAGTTAG+AGG | 0.392515 | 5.1:-57232162 | MS.gene91238:CDS |
| AGACGAAGAGGAATTGGGAT+TGG | 0.410407 | 5.1:+57233530 | None:intergenic |
| GACGAAGAGGAATTGGGATT+GGG | 0.428563 | 5.1:+57233531 | None:intergenic |
| TGCTGCATGATCTCTTGAAA+GGG | 0.441228 | 5.1:+57232075 | None:intergenic |
| TTTGGAGACGAAGAGGAATT+GGG | 0.442315 | 5.1:+57233525 | None:intergenic |
| AATTGGGATTGGGTGGTTGA+CGG | 0.447331 | 5.1:+57233541 | None:intergenic |
| TTAGCGTTTGCTGATGCATC+GGG | 0.457884 | 5.1:-57233585 | MS.gene91238:CDS |
| TTCTAAAGATGGTGATTTGG+TGG | 0.461988 | 5.1:-57232051 | MS.gene91238:CDS |
| GAAGAACAGAGGATTATCAT+TGG | 0.463772 | 5.1:+57233479 | None:intergenic |
| GGGACTTGGAAATGTTATAA+GGG | 0.475852 | 5.1:-57232239 | MS.gene91238:CDS |
| TTGGAACCGAAAAGATCGAT+TGG | 0.478169 | 5.1:+57233636 | None:intergenic |
| GATTGGGATGTGTTGATCTT+CGG | 0.483082 | 5.1:+57233653 | None:intergenic |
| ATCGGGTAACATAGTCTTCA+AGG | 0.483954 | 5.1:-57233568 | MS.gene91238:CDS |
| TGGAACCGAAAAGATCGATT+GGG | 0.488185 | 5.1:+57233637 | None:intergenic |
| ATGCTGCATGATCTCTTGAA+AGG | 0.498992 | 5.1:+57232074 | None:intergenic |
| AGATGGTGATTTGGTGGCAC+AGG | 0.523496 | 5.1:-57232045 | MS.gene91238:intron |
| CTTAGCGTTTGCTGATGCAT+CGG | 0.528232 | 5.1:-57233586 | MS.gene91238:CDS |
| TGGAAATGTTATAAGGGAAG+TGG | 0.531416 | 5.1:-57232233 | MS.gene91238:CDS |
| TCATGCAGCATTTCTAAAGA+TGG | 0.534516 | 5.1:-57232062 | MS.gene91238:CDS |
| CAATTCCTCTTCGTCTCCAA+AGG | 0.553127 | 5.1:-57233523 | MS.gene91238:CDS |
| GAAGAGGAATTGGGATTGGG+TGG | 0.563577 | 5.1:+57233534 | None:intergenic |
| AAAACACCTCTAACTCAACT+CGG | 0.575143 | 5.1:+57232156 | None:intergenic |
| TAAGATTCCACGTGGAACTC+CGG | 0.595730 | 5.1:+57233605 | None:intergenic |
| AGCTTGTGTTAGAAGTGAAG+AGG | 0.604864 | 5.1:-57232196 | MS.gene91238:CDS |
| AAACACCTCTAACTCAACTC+GGG | 0.609005 | 5.1:+57232157 | None:intergenic |
| GGTATCCTTTGGAGACGAAG+AGG | 0.609702 | 5.1:+57233518 | None:intergenic |
| GCTGCATGATCTCTTGAAAG+GGG | 0.632578 | 5.1:+57232076 | None:intergenic |
| AAGAGAGACTAACATGATGA+CGG | 0.636080 | 5.1:+57233451 | None:intergenic |
| ACTTCAGATTTGGAGTACAC+AGG | 0.646841 | 5.1:-57233678 | MS.gene91238:CDS |
| AGAGACTAACATGATGACGG+TGG | 0.699942 | 5.1:+57233454 | None:intergenic |
| AAACAAGCCGGAGTTCCACG+TGG | 0.704987 | 5.1:-57233612 | MS.gene91238:CDS |
| TGACGGTGGATGAAGAACAG+AGG | 0.729871 | 5.1:+57233468 | None:intergenic |
| GCAAACGCTAAGATTCCACG+TGG | 0.780342 | 5.1:+57233597 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAAATACTGATTTAGTTAT+AGG | - | chr5.1:57233372-57233391 | MS.gene91238:intron | 15.0% |
| !!! | TTTTTTTTTTTTGGTAGAAT+GGG | - | chr5.1:57233034-57233053 | MS.gene91238:intron | 15.0% |
| !!! | TTTTTTTTTTTTTGGTAGAA+TGG | - | chr5.1:57233033-57233052 | MS.gene91238:intron | 15.0% |
| !! | AACATAAAAACAAGTTCTTA+TGG | + | chr5.1:57232381-57232400 | None:intergenic | 20.0% |
| !! | ACAAGTTAAGAAGTTAAAAA+TGG | - | chr5.1:57232130-57232149 | MS.gene91238:CDS | 20.0% |
| !! | GTTCTTAATTTATTCTAAGT+GGG | + | chr5.1:57232480-57232499 | None:intergenic | 20.0% |
| !! | TGTTCTTAATTTATTCTAAG+TGG | + | chr5.1:57232481-57232500 | None:intergenic | 20.0% |
| !! | TTAAATCAAAACTGCAAATA+CGG | + | chr5.1:57232916-57232935 | None:intergenic | 20.0% |
| !! | TTCTTCTTTATTATTCAATC+TGG | - | chr5.1:57231874-57231893 | MS.gene91238:intron | 20.0% |
| !!! | CAATCATTATATTTTTGCAT+TGG | - | chr5.1:57232499-57232518 | MS.gene91238:intron | 20.0% |
| !!! | GATGTTATTTTGATGAATTA+TGG | - | chr5.1:57233655-57233674 | MS.gene91238:CDS | 20.0% |
| !!! | GGATTGTAAATGTTATTTTT+AGG | - | chr5.1:57233676-57233695 | MS.gene91238:CDS | 20.0% |
| !!! | TTTTGAGTAAACAATCATTT+TGG | + | chr5.1:57232977-57232996 | None:intergenic | 20.0% |
| ! | AACATATCATAGAACAACAT+CGG | + | chr5.1:57232351-57232370 | None:intergenic | 25.0% |
| ! | AAGAAATTTGTGCAAGATAT+TGG | - | chr5.1:57232783-57232802 | MS.gene91238:intron | 25.0% |
| ! | AGAAATTTGTGCAAGATATT+GGG | - | chr5.1:57232784-57232803 | MS.gene91238:intron | 25.0% |
| ! | TTGCACAAATTTCTTAAATG+AGG | + | chr5.1:57232778-57232797 | None:intergenic | 25.0% |
| !! | AAGTCTTCAAAATTTAAGAC+CGG | + | chr5.1:57232320-57232339 | None:intergenic | 25.0% |
| !! | AATTTTAAATCATCTCCTCA+AGG | + | chr5.1:57232176-57232195 | None:intergenic | 25.0% |
| !! | TTTATGTTCTTCAAGCATTT+TGG | + | chr5.1:57232576-57232595 | None:intergenic | 25.0% |
| !! | TTTGAAATGAACTGTTATCT+AGG | + | chr5.1:57233338-57233357 | None:intergenic | 25.0% |
| !!! | AATACTGATTTAGTTATAGG+TGG | - | chr5.1:57233375-57233394 | MS.gene91238:intron | 25.0% |
| !!! | ATCCCTTTTAAAAAAGAGAA+AGG | - | chr5.1:57232272-57232291 | MS.gene91238:intron | 25.0% |
| !!! | TCCCTTTCTCTTTTTTAAAA+GGG | + | chr5.1:57232277-57232296 | None:intergenic | 25.0% |
| !!! | TCCCTTTTAAAAAAGAGAAA+GGG | - | chr5.1:57232273-57232292 | MS.gene91238:intron | 25.0% |
| !!! | TGTATGCGTGTATTTTTTTT+TGG | - | chr5.1:57233427-57233446 | MS.gene91238:intron | 25.0% |
| !!! | TTTTTGGTCAAATAGTCTAT+TGG | - | chr5.1:57233443-57233462 | MS.gene91238:intron | 25.0% |
| AATCAAGCAATTAACTCGAA+TGG | - | chr5.1:57232009-57232028 | MS.gene91238:intron | 30.0% | |
| ACAAGGAAATTTGATGTGTT+GGG | + | chr5.1:57233526-57233545 | None:intergenic | 30.0% | |
| ACCATATGAGTTGTACTTAT+GGG | - | chr5.1:57233550-57233569 | MS.gene91238:CDS | 30.0% | |
| AGTAATAAACAGTCTTACAG+CGG | + | chr5.1:57231936-57231955 | None:intergenic | 30.0% | |
| GCTAAACTTTACTTAACTTC+CGG | - | chr5.1:57232089-57232108 | MS.gene91238:CDS | 30.0% | |
| TACAAGGAAATTTGATGTGT+TGG | + | chr5.1:57233527-57233546 | None:intergenic | 30.0% | |
| TACCATATGAGTTGTACTTA+TGG | - | chr5.1:57233549-57233568 | MS.gene91238:CDS | 30.0% | |
| TGTTCTATGATATGTTCTTG+AGG | - | chr5.1:57232355-57232374 | MS.gene91238:intron | 30.0% | |
| ! | CATTTCTAAAGATGGTGATT+TGG | - | chr5.1:57233239-57233258 | MS.gene91238:intron | 30.0% |
| ! | GTTTTTATGTTCTATCCCAT+TGG | - | chr5.1:57232390-57232409 | MS.gene91238:intron | 30.0% |
| ! | TTTTGTTCTAGCATTGTAGA+TGG | - | chr5.1:57232596-57232615 | MS.gene91238:intron | 30.0% |
| !! | AATCATAAGTTTTGTCCTTG+AGG | - | chr5.1:57232158-57232177 | MS.gene91238:CDS | 30.0% |
| !! | ACATTAAGTGTTGGTAAGTA+GGG | - | chr5.1:57233478-57233497 | MS.gene91238:CDS | 30.0% |
| !! | CGTATTTTAAATAGGCAACA+AGG | - | chr5.1:57233580-57233599 | MS.gene91238:CDS | 30.0% |
| !! | GCTATCTGCGTATTTTAAAT+AGG | - | chr5.1:57233572-57233591 | MS.gene91238:CDS | 30.0% |
| !!! | GTCCCTTTCTCTTTTTTAAA+AGG | + | chr5.1:57232278-57232297 | None:intergenic | 30.0% |
| AAAACACCTCTAACTCAACT+CGG | + | chr5.1:57233140-57233159 | None:intergenic | 35.0% | |
| AAGAGAGACTAACATGATGA+CGG | + | chr5.1:57231845-57231864 | None:intergenic | 35.0% | |
| ACTTACCAACACTTAATGTG+TGG | + | chr5.1:57233477-57233496 | None:intergenic | 35.0% | |
| ATCAGAGAGAAAATTGGTTG+GGG | - | chr5.1:57232636-57232655 | MS.gene91238:intron | 35.0% | |
| ATCCAACTCAGGTTATGATT+AGG | + | chr5.1:57232048-57232067 | None:intergenic | 35.0% | |
| ATGGATTCCATGTTGAAGAA+CGG | - | chr5.1:57232424-57232443 | MS.gene91238:intron | 35.0% | |
| ATTGGAATCAAGCAAGAGTT+TGG | + | chr5.1:57231799-57231818 | None:intergenic | 35.0% | |
| CAACTCATATGGTAACTACA+AGG | + | chr5.1:57233543-57233562 | None:intergenic | 35.0% | |
| CAAGGAAATTTGATGTGTTG+GGG | + | chr5.1:57233525-57233544 | None:intergenic | 35.0% | |
| CATCAGAGAGAAAATTGGTT+GGG | - | chr5.1:57232635-57232654 | MS.gene91238:intron | 35.0% | |
| CATTGTAGATGGTACCTATT+AGG | - | chr5.1:57232607-57232626 | MS.gene91238:intron | 35.0% | |
| CTTACCAACACTTAATGTGT+GGG | + | chr5.1:57233476-57233495 | None:intergenic | 35.0% | |
| GAAATGATCGAGACTTTGTT+CGG | + | chr5.1:57231976-57231995 | None:intergenic | 35.0% | |
| GAACAAAGTCTCGATCATTT+CGG | - | chr5.1:57231975-57231994 | MS.gene91238:intron | 35.0% | |
| GAAGAACAGAGGATTATCAT+TGG | + | chr5.1:57231817-57231836 | None:intergenic | 35.0% | |
| GCAATTAACTCGAATGGTTA+AGG | - | chr5.1:57232015-57232034 | MS.gene91238:intron | 35.0% | |
| GCTTGCGACTTAAAAGTAAT+TGG | - | chr5.1:57233192-57233211 | MS.gene91238:intron | 35.0% | |
| GGGACTTGGAAATGTTATAA+GGG | - | chr5.1:57233054-57233073 | MS.gene91238:intron | 35.0% | |
| GTAGATCACACTTAAGATTG+AGG | + | chr5.1:57232692-57232711 | None:intergenic | 35.0% | |
| TATAACAGAGTTAGACCATC+CGG | - | chr5.1:57232298-57232317 | MS.gene91238:intron | 35.0% | |
| TGCATTGGAGTAAAACTACA+TGG | - | chr5.1:57232514-57232533 | MS.gene91238:intron | 35.0% | |
| TGGAAATGTTATAAGGGAAG+TGG | - | chr5.1:57233060-57233079 | MS.gene91238:intron | 35.0% | |
| TGGGACTTGGAAATGTTATA+AGG | - | chr5.1:57233053-57233072 | MS.gene91238:intron | 35.0% | |
| ! | AACCAATTTTCTCTCTGATG+GGG | + | chr5.1:57232635-57232654 | None:intergenic | 35.0% |
| ! | ATGTTCTTCAAGCATTTTGG+TGG | + | chr5.1:57232573-57232592 | None:intergenic | 35.0% |
| ! | CAACCAATTTTCTCTCTGAT+GGG | + | chr5.1:57232636-57232655 | None:intergenic | 35.0% |
| ! | CTGTTATCTAGGATCATCAA+CGG | + | chr5.1:57233327-57233346 | None:intergenic | 35.0% |
| ! | CTTCAAAATTTAAGACCGGA+TGG | + | chr5.1:57232316-57232335 | None:intergenic | 35.0% |
| ! | TCATGCAGCATTTCTAAAGA+TGG | - | chr5.1:57233231-57233250 | MS.gene91238:intron | 35.0% |
| ! | TTCTAAAGATGGTGATTTGG+TGG | - | chr5.1:57233242-57233261 | MS.gene91238:intron | 35.0% |
| !! | AGAGGGATTAAGTGTTGATA+AGG | - | chr5.1:57232809-57232828 | MS.gene91238:intron | 35.0% |
| !! | CACATTAAGTGTTGGTAAGT+AGG | - | chr5.1:57233477-57233496 | MS.gene91238:CDS | 35.0% |
| !! | TGTTCTTCAAGCATTTTGGT+GGG | + | chr5.1:57232572-57232591 | None:intergenic | 35.0% |
| !!! | TGGCACATGTTTTAGTTGTT+TGG | - | chr5.1:57233395-57233414 | MS.gene91238:intron | 35.0% |
| !!! | TTTTTTGGTAGAATGGGACT+TGG | - | chr5.1:57233040-57233059 | MS.gene91238:intron | 35.0% |
| AAACACCTCTAACTCAACTC+GGG | + | chr5.1:57233139-57233158 | None:intergenic | 40.0% | |
| ACACTTAATGTGTGGGATAC+TGG | + | chr5.1:57233469-57233488 | None:intergenic | 40.0% | |
| AGCAAGAGTTTGGTATCCTT+TGG | + | chr5.1:57231789-57231808 | None:intergenic | 40.0% | |
| AGCTTGTGTTAGAAGTGAAG+AGG | - | chr5.1:57233097-57233116 | MS.gene91238:intron | 40.0% | |
| AGTGAGACCTTTGGACTTAT+AGG | + | chr5.1:57232664-57232683 | None:intergenic | 40.0% | |
| AGTGTTCTCCAATGTTCTTC+AGG | + | chr5.1:57232455-57232474 | None:intergenic | 40.0% | |
| ATCGGGTAACATAGTCTTCA+AGG | - | chr5.1:57231725-57231744 | MS.gene91238:intron | 40.0% | |
| ATGCTGCATGATCTCTTGAA+AGG | + | chr5.1:57233222-57233241 | None:intergenic | 40.0% | |
| CAACTCAGGTTATGATTAGG+TGG | + | chr5.1:57232045-57232064 | None:intergenic | 40.0% | |
| CACCTAATCATAACCTGAGT+TGG | - | chr5.1:57232043-57232062 | MS.gene91238:intron | 40.0% | |
| CCATCAGAGAGAAAATTGGT+TGG | - | chr5.1:57232634-57232653 | MS.gene91238:intron | 40.0% | |
| GCCCATAAGTACAACTCATA+TGG | + | chr5.1:57233554-57233573 | None:intergenic | 40.0% | |
| GTATCCCACACATTAAGTGT+TGG | - | chr5.1:57233469-57233488 | MS.gene91238:CDS | 40.0% | |
| GTGTTCTCCAATGTTCTTCA+GGG | + | chr5.1:57232454-57232473 | None:intergenic | 40.0% | |
| TACCCCATCAGAGAGAAAAT+TGG | - | chr5.1:57232630-57232649 | MS.gene91238:intron | 40.0% | |
| TATGTTCTATCCCATTGGAG+TGG | - | chr5.1:57232395-57232414 | MS.gene91238:intron | 40.0% | |
| TATTTAAGTACCCCCCATTG+TGG | - | chr5.1:57232879-57232898 | MS.gene91238:intron | 40.0% | |
| TCAGAGAGAAAATTGGTTGG+GGG | - | chr5.1:57232637-57232656 | MS.gene91238:intron | 40.0% | |
| TGCTGCATGATCTCTTGAAA+GGG | + | chr5.1:57233221-57233240 | None:intergenic | 40.0% | |
| TGGAACCGAAAAGATCGATT+GGG | + | chr5.1:57231659-57231678 | None:intergenic | 40.0% | |
| TTCCGCATTGGAACAATTCT+CGG | - | chr5.1:57232067-57232086 | MS.gene91238:CDS | 40.0% | |
| TTCGGTTCCAAAAAACAAGC+CGG | - | chr5.1:57231669-57231688 | MS.gene91238:intron | 40.0% | |
| TTGGAACCGAAAAGATCGAT+TGG | + | chr5.1:57231660-57231679 | None:intergenic | 40.0% | |
| TTTGGAGACGAAGAGGAATT+GGG | + | chr5.1:57231771-57231790 | None:intergenic | 40.0% | |
| ! | AATTACCCGAGTTGAGTTAG+AGG | - | chr5.1:57233131-57233150 | MS.gene91238:intron | 40.0% |
| ! | ACTTCAGATTTGGAGTACAC+AGG | - | chr5.1:57231615-57231634 | MS.gene91238:intron | 40.0% |
| ! | CACATCCCAATCGATCTTTT+CGG | - | chr5.1:57231651-57231670 | MS.gene91238:intron | 40.0% |
| ! | CCAACCAATTTTCTCTCTGA+TGG | + | chr5.1:57232637-57232656 | None:intergenic | 40.0% |
| ! | GATTGGGATGTGTTGATCTT+CGG | + | chr5.1:57231643-57231662 | None:intergenic | 40.0% |
| ! | GTGCAAGATATTGGGTTAGA+GGG | - | chr5.1:57232792-57232811 | MS.gene91238:intron | 40.0% |
| ! | TGTGCAAGATATTGGGTTAG+AGG | - | chr5.1:57232791-57232810 | MS.gene91238:intron | 40.0% |
| ! | TGTTGGTAAGTAGGGAATTG+CGG | - | chr5.1:57233486-57233505 | MS.gene91238:CDS | 40.0% |
| !! | TTCTTAACTTGTGCCCTCTT+AGG | + | chr5.1:57232122-57232141 | None:intergenic | 40.0% |
| !!! | GAGTTAGAGGTGTTTTTTGC+TGG | - | chr5.1:57233144-57233163 | MS.gene91238:intron | 40.0% |
| AATTGGGATTGGGTGGTTGA+CGG | + | chr5.1:57231755-57231774 | None:intergenic | 45.0% | |
| AGACGAAGAGGAATTGGGAT+TGG | + | chr5.1:57231766-57231785 | None:intergenic | 45.0% | |
| AGCCGAGAATTGTTCCAATG+CGG | + | chr5.1:57232072-57232091 | None:intergenic | 45.0% | |
| CAATTCCTCTTCGTCTCCAA+AGG | - | chr5.1:57231770-57231789 | MS.gene91238:intron | 45.0% | |
| CCATGTCATTCCACTCCAAT+GGG | + | chr5.1:57232408-57232427 | None:intergenic | 45.0% | |
| GACGAAGAGGAATTGGGATT+GGG | + | chr5.1:57231765-57231784 | None:intergenic | 45.0% | |
| GAGGTTGTAAGTGAGACCTT+TGG | + | chr5.1:57232673-57232692 | None:intergenic | 45.0% | |
| GCTGCATGATCTCTTGAAAG+GGG | + | chr5.1:57233220-57233239 | None:intergenic | 45.0% | |
| GTTGATCTTGAATCCCCATG+TGG | - | chr5.1:57232536-57232555 | MS.gene91238:intron | 45.0% | |
| TAAGATTCCACGTGGAACTC+CGG | + | chr5.1:57231691-57231710 | None:intergenic | 45.0% | |
| TCCATGTCATTCCACTCCAA+TGG | + | chr5.1:57232409-57232428 | None:intergenic | 45.0% | |
| TTCCGGTCAAACTCCTAAGA+GGG | - | chr5.1:57232106-57232125 | MS.gene91238:CDS | 45.0% | |
| ! | CCTTTTAGCATCCACAATGG+GGG | + | chr5.1:57232893-57232912 | None:intergenic | 45.0% |
| ! | CTTAGCGTTTGCTGATGCAT+CGG | - | chr5.1:57231707-57231726 | MS.gene91238:intron | 45.0% |
| ! | CTTTGGAGACGAAGAGGAAT+TGG | + | chr5.1:57231772-57231791 | None:intergenic | 45.0% |
| ! | CTTTTAGCATCCACAATGGG+GGG | + | chr5.1:57232892-57232911 | None:intergenic | 45.0% |
| ! | GCCTTTTAGCATCCACAATG+GGG | + | chr5.1:57232894-57232913 | None:intergenic | 45.0% |
| ! | GGCCTTTTAGCATCCACAAT+GGG | + | chr5.1:57232895-57232914 | None:intergenic | 45.0% |
| ! | GGGAAGTGGTGATGAGAATA+AGG | - | chr5.1:57233074-57233093 | MS.gene91238:intron | 45.0% |
| ! | GTTGGTAAGTAGGGAATTGC+GGG | - | chr5.1:57233487-57233506 | MS.gene91238:CDS | 45.0% |
| ! | TCTCTGATGGGGTACCTAAT+AGG | + | chr5.1:57232624-57232643 | None:intergenic | 45.0% |
| ! | TTAGCGTTTGCTGATGCATC+GGG | - | chr5.1:57231708-57231727 | MS.gene91238:intron | 45.0% |
| !! | AGAGACTAACATGATGACGG+TGG | + | chr5.1:57231842-57231861 | None:intergenic | 45.0% |
| !!! | TGGAACTCCGGCTTGTTTTT+TGG | + | chr5.1:57231679-57231698 | None:intergenic | 45.0% |
| !!! | ATATGTATTTTTTTTTTTTT+TGG | - | chr5.1:57233025-57233044 | MS.gene91238:intron | 5.0% |
| CCCATTGGAGTGGAATGACA+TGG | - | chr5.1:57232405-57232424 | MS.gene91238:intron | 50.0% | |
| CCCCCATTGTGGATGCTAAA+AGG | - | chr5.1:57232890-57232909 | MS.gene91238:intron | 50.0% | |
| CGGTTCTCCCTGAAGAACAT+TGG | - | chr5.1:57232444-57232463 | MS.gene91238:intron | 50.0% | |
| CTTCCGGTCAAACTCCTAAG+AGG | - | chr5.1:57232105-57232124 | MS.gene91238:CDS | 50.0% | |
| GAAGAGGAATTGGGATTGGG+TGG | + | chr5.1:57231762-57231781 | None:intergenic | 50.0% | |
| GAATCCCCATGTGGCAATGA+TGG | - | chr5.1:57232545-57232564 | MS.gene91238:intron | 50.0% | |
| GCAAACGCTAAGATTCCACG+TGG | + | chr5.1:57231699-57231718 | None:intergenic | 50.0% | |
| GGGAGAACCGTTCTTCAACA+TGG | + | chr5.1:57232434-57232453 | None:intergenic | 50.0% | |
| TCCAATGCGGAATCCAACTC+AGG | + | chr5.1:57232059-57232078 | None:intergenic | 50.0% | |
| TGACGGTGGATGAAGAACAG+AGG | + | chr5.1:57231828-57231847 | None:intergenic | 50.0% | |
| TGCCCTCTTAGGAGTTTGAC+CGG | + | chr5.1:57232111-57232130 | None:intergenic | 50.0% | |
| TGGGGGTCCTATAAGTCCAA+AGG | - | chr5.1:57232654-57232673 | MS.gene91238:intron | 50.0% | |
| TGGGTCCATCATTGCCACAT+GGG | + | chr5.1:57232553-57232572 | None:intergenic | 50.0% | |
| ! | ACCTGAGTTGGATTCCGCAT+TGG | - | chr5.1:57232055-57232074 | MS.gene91238:CDS | 50.0% |
| ! | CGGCCTTTTAGCATCCACAA+TGG | + | chr5.1:57232896-57232915 | None:intergenic | 50.0% |
| ! | GGTATCCTTTGGAGACGAAG+AGG | + | chr5.1:57231778-57231797 | None:intergenic | 50.0% |
| !! | AGATGGTGATTTGGTGGCAC+AGG | - | chr5.1:57233248-57233267 | MS.gene91238:intron | 50.0% |
| AAACAAGCCGGAGTTCCACG+TGG | - | chr5.1:57231681-57231700 | MS.gene91238:intron | 55.0% | |
| GGGTCCATCATTGCCACATG+GGG | + | chr5.1:57232552-57232571 | None:intergenic | 55.0% | |
| GTGGGTCCATCATTGCCACA+TGG | + | chr5.1:57232554-57232573 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 57231609 | 57233706 | 57231609 | ID=MS.gene91238 |
| chr5.1 | mRNA | 57231609 | 57233706 | 57231609 | ID=MS.gene91238.t1;Parent=MS.gene91238 |
| chr5.1 | exon | 57233464 | 57233706 | 57233464 | ID=MS.gene91238.t1.exon1;Parent=MS.gene91238.t1 |
| chr5.1 | CDS | 57233464 | 57233706 | 57233464 | ID=cds.MS.gene91238.t1;Parent=MS.gene91238.t1 |
| chr5.1 | exon | 57232046 | 57232264 | 57232046 | ID=MS.gene91238.t1.exon2;Parent=MS.gene91238.t1 |
| chr5.1 | CDS | 57232046 | 57232264 | 57232046 | ID=cds.MS.gene91238.t1;Parent=MS.gene91238.t1 |
| chr5.1 | exon | 57231609 | 57231617 | 57231609 | ID=MS.gene91238.t1.exon3;Parent=MS.gene91238.t1 |
| chr5.1 | CDS | 57231609 | 57231617 | 57231609 | ID=cds.MS.gene91238.t1;Parent=MS.gene91238.t1 |
| Gene Sequence |
| Protein sequence |
