Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene93389.t1 | XP_003604599.2 | 92.9 | 589 | 39 | 3 | 1 | 587 | 5 | 592 | 0.00E+00 | 1079.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene93389.t1 | O60942 | 33.3 | 513 | 267 | 15 | 85 | 565 | 4 | 473 | 6.6e-65 | 250.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene93389.t1 | G7JLW2 | 92.9 | 589 | 39 | 3 | 1 | 587 | 1 | 588 | 0.0e+00 | 1079.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene052775 | MS.gene93389 | 0.855849 | 4.79E-62 | -1.69E-46 |
MS.gene052776 | MS.gene93389 | 0.820166 | 7.92E-53 | -1.69E-46 |
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene93389.t1 | MTR_4g014920 | 98.642 | 589 | 5 | 3 | 1 | 587 | 5 | 592 | 0.0 | 1208 |
MS.gene93389.t1 | MTR_4g014920 | 98.642 | 589 | 5 | 3 | 1 | 587 | 1 | 588 | 0.0 | 1206 |
MS.gene93389.t1 | MTR_4g014920 | 98.642 | 589 | 5 | 3 | 1 | 587 | 5 | 592 | 0.0 | 1204 |
MS.gene93389.t1 | MTR_4g014920 | 98.589 | 567 | 5 | 3 | 1 | 565 | 5 | 570 | 0.0 | 1161 |
MS.gene93389.t1 | MTR_7g066810 | 80.737 | 597 | 98 | 6 | 1 | 585 | 5 | 596 | 0.0 | 945 |
MS.gene93389.t1 | MTR_7g094670 | 63.024 | 549 | 187 | 7 | 41 | 586 | 2 | 537 | 0.0 | 709 |
MS.gene93389.t1 | MTR_7g068260 | 40.476 | 126 | 23 | 1 | 460 | 585 | 29 | 102 | 2.36e-20 | 87.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene93389.t1 | AT3G09100 | 69.595 | 592 | 160 | 8 | 1 | 586 | 5 | 582 | 0.0 | 808 |
MS.gene93389.t1 | AT5G01290 | 65.705 | 589 | 175 | 8 | 1 | 585 | 1 | 566 | 0.0 | 743 |
MS.gene93389.t1 | AT3G09100 | 68.172 | 465 | 134 | 6 | 1 | 460 | 5 | 460 | 0.0 | 617 |
MS.gene93389.t1 | AT5G28210 | 58.300 | 506 | 175 | 13 | 87 | 585 | 48 | 524 | 0.0 | 569 |
Find 126 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTACTTGTATCATATGATTT+AGG | 0.203328 | 4.1:+81381369 | None:intergenic |
TATACTTCTTTGACTGCTTT+TGG | 0.245704 | 4.1:+81376914 | None:intergenic |
CTCTCCTGCTTATTTGAATC+TGG | 0.252109 | 4.1:+81370643 | None:intergenic |
TTGCTGTATGATACCTTCTA+AGG | 0.257285 | 4.1:-81377806 | MS.gene93389:CDS |
GGCAGATGGTCTTATATTTC+AGG | 0.279436 | 4.1:-81369998 | MS.gene93389:intron |
TAGAACCTGTTGAGAGAAAC+TGG | 0.279933 | 4.1:+81373197 | None:intergenic |
CATCTTCCATCTTTCATAGA+AGG | 0.284381 | 4.1:+81370286 | None:intergenic |
AAAGTCAACTGAATTTAAAT+TGG | 0.286326 | 4.1:+81369709 | None:intergenic |
GATATGATCTGGAACCATTC+AGG | 0.296869 | 4.1:-81370190 | MS.gene93389:CDS |
GAAACTCTTGGATGGGAATA+AGG | 0.299659 | 4.1:-81369524 | None:intergenic |
TATATCCATACCTGCAAATC+AGG | 0.305254 | 4.1:+81376501 | None:intergenic |
GTACAATGCATCAATATAAT+CGG | 0.312682 | 4.1:+81376650 | None:intergenic |
CTGTTATCAAACACTTAGAT+TGG | 0.314711 | 4.1:-81374864 | MS.gene93389:CDS |
TTCAATGACTGCATCTTTCC+TGG | 0.327539 | 4.1:-81377766 | MS.gene93389:CDS |
ATACCTTATATATGATCTTA+TGG | 0.335734 | 4.1:-81370617 | MS.gene93389:CDS |
TCCAAATGAGGTTTCCTTGC+AGG | 0.339727 | 4.1:-81372055 | MS.gene93389:CDS |
GACCCACCATTTCACATTGC+TGG | 0.345896 | 4.1:-81370692 | MS.gene93389:CDS |
TTCAGTTGACTTTCTGTTTG+AGG | 0.348533 | 4.1:-81369699 | MS.gene93389:intron |
AAACACTTAGATTGGGTGTT+GGG | 0.348829 | 4.1:-81374856 | MS.gene93389:CDS |
CACACCCAGTTTCTCTCAAC+AGG | 0.355691 | 4.1:-81373202 | MS.gene93389:intron |
AGTCCCAGGCCCTGATTTGC+AGG | 0.355862 | 4.1:-81376511 | MS.gene93389:intron |
CCACTTTCTATACGTTCTTC+AGG | 0.357580 | 4.1:+81382519 | None:intergenic |
AGAGGGTATCAAGCATCTTA+AGG | 0.368989 | 4.1:-81377329 | MS.gene93389:intron |
TCTTGATTTGCAGCTTGGTC+TGG | 0.383493 | 4.1:-81377404 | MS.gene93389:intron |
TTGCCATAAGATCATATATA+AGG | 0.384966 | 4.1:+81370614 | None:intergenic |
TAATCGGGTTTATAGATTCC+TGG | 0.398054 | 4.1:+81376666 | None:intergenic |
ACATAGCACGCATTAGATAA+TGG | 0.401286 | 4.1:+81376842 | None:intergenic |
CAACCATGTTTCAGTAATAG+AGG | 0.418216 | 4.1:-81370590 | MS.gene93389:intron |
TCCTGCAAGGAAACCTCATT+TGG | 0.422217 | 4.1:+81372054 | None:intergenic |
TCACCAAGAGGAACCTTAGA+AGG | 0.423450 | 4.1:+81377793 | None:intergenic |
AGAGGACATACACAATTTCC+AGG | 0.428565 | 4.1:-81373227 | MS.gene93389:CDS |
TGTAGTAAGGATTTCTGCTC+TGG | 0.435361 | 4.1:+81370213 | None:intergenic |
TGCTTCCATCGGCAGGTTGA+AGG | 0.440873 | 4.1:-81369586 | MS.gene93389:intron |
CACCATCCAGCAATGTGAAA+TGG | 0.442513 | 4.1:+81370686 | None:intergenic |
TACAATGCATCAATATAATC+GGG | 0.448524 | 4.1:+81376651 | None:intergenic |
TGTTATCAAACACTTAGATT+GGG | 0.458416 | 4.1:-81374863 | MS.gene93389:CDS |
TATGTCAATGTCTGTTACTC+AGG | 0.458504 | 4.1:-81376824 | MS.gene93389:intron |
TGATGCACGGGTCTATCATC+TGG | 0.459875 | 4.1:+81381438 | None:intergenic |
TGATGTCGTTCGTGATTCCT+AGG | 0.470600 | 4.1:+81370242 | None:intergenic |
CAGCAAATCTCCTGGCCTGA+TGG | 0.473077 | 4.1:+81377823 | None:intergenic |
TCCAGATCATATCTGTAGTA+AGG | 0.475878 | 4.1:+81370200 | None:intergenic |
TCATGAGTACGTGGTACATA+AGG | 0.478867 | 4.1:+81369755 | None:intergenic |
TGATACAAGTAGGCTTCCTC+CGG | 0.479076 | 4.1:-81381358 | MS.gene93389:CDS |
TGTAAATCAGTTCGTCTATG+AGG | 0.480532 | 4.1:-81377155 | MS.gene93389:intron |
GAGGATGATGATGGAGTCCC+AGG | 0.483153 | 4.1:-81376525 | MS.gene93389:CDS |
TGGTTAGATTGCCCTCCATC+AGG | 0.483908 | 4.1:-81377838 | MS.gene93389:CDS |
CATACCTGCAAATCAGGGCC+TGG | 0.484563 | 4.1:+81376507 | None:intergenic |
TGGAAATTGTGTATGTCCTC+TGG | 0.487711 | 4.1:+81373229 | None:intergenic |
ATACCTTCTAAGGTTCCTCT+TGG | 0.491347 | 4.1:-81377796 | MS.gene93389:CDS |
TCCTTACTACAGATATGATC+TGG | 0.492566 | 4.1:-81370201 | MS.gene93389:CDS |
AGAGAAACTGGGTGTGAACC+TGG | 0.494965 | 4.1:+81373209 | None:intergenic |
ATCGGCAGGTTGAAGGTGAT+CGG | 0.499299 | 4.1:-81369579 | MS.gene93389:intron |
GGAGGACAAACTACCATCTC+AGG | 0.503101 | 4.1:+81376606 | None:intergenic |
ACTCCATCATCATCCTCGTC+AGG | 0.505855 | 4.1:+81376531 | None:intergenic |
TCGGCAGGTTGAAGGTGATC+GGG | 0.508639 | 4.1:-81369578 | MS.gene93389:intron |
TCATCTGTGAGCTTGTCTCA+TGG | 0.508881 | 4.1:+81374948 | None:intergenic |
GGTAGTTTGTCCTCCTACTC+CGG | 0.511592 | 4.1:-81376598 | MS.gene93389:CDS |
TACACATGGGCATAATCGTA+CGG | 0.511801 | 4.1:-81376878 | MS.gene93389:CDS |
TCTTCATCTTCCTCCGGTAC+CGG | 0.513155 | 4.1:+81382585 | None:intergenic |
ATATGATCTGGAACCATTCA+GGG | 0.513320 | 4.1:-81370189 | MS.gene93389:intron |
ATACCTGCAAATCAGGGCCT+GGG | 0.513462 | 4.1:+81376508 | None:intergenic |
TCTTCTGAACTTGATCTCAA+TGG | 0.513742 | 4.1:-81376564 | MS.gene93389:CDS |
TTCAAGATGCATGCCCTGAA+TGG | 0.520586 | 4.1:+81370176 | None:intergenic |
TTTGAATGCATCTCCGGTAC+CGG | 0.521510 | 4.1:-81382598 | MS.gene93389:CDS |
ATCTTCCATCTTTCATAGAA+GGG | 0.521972 | 4.1:+81370287 | None:intergenic |
CTCATGAAGGACTCTTAAAG+TGG | 0.522723 | 4.1:-81369739 | MS.gene93389:CDS |
ATGATGTTAATAACAATGGA+TGG | 0.526023 | 4.1:-81372116 | MS.gene93389:CDS |
ACGGGGAAAGAAGAAACTCT+TGG | 0.528706 | 4.1:-81369536 | MS.gene93389:CDS |
CAAACACTTAGATTGGGTGT+TGG | 0.529106 | 4.1:-81374857 | MS.gene93389:CDS |
CACATTGCTGGATGGTGAGA+TGG | 0.531583 | 4.1:-81370680 | MS.gene93389:CDS |
CTTGCCAGATTCAAATAAGC+AGG | 0.531786 | 4.1:-81370647 | MS.gene93389:CDS |
AATGGATTTGAATGCATCTC+CGG | 0.531795 | 4.1:-81382604 | MS.gene93389:CDS |
AAAATATCTTCATCTTCCTC+CGG | 0.532283 | 4.1:+81382579 | None:intergenic |
GTTCCTGACGAGGATGATGA+TGG | 0.533773 | 4.1:-81376534 | MS.gene93389:CDS |
CCTGAAGAACGTATAGAAAG+TGG | 0.534848 | 4.1:-81382519 | MS.gene93389:CDS |
CAAATCTCCTGGCCTGATGG+AGG | 0.537610 | 4.1:+81377826 | None:intergenic |
CACCATTTCACATTGCTGGA+TGG | 0.538269 | 4.1:-81370688 | MS.gene93389:CDS |
ATTGTCGAAGGGTCCAAATG+AGG | 0.544433 | 4.1:-81372067 | MS.gene93389:CDS |
GGAAAGAAGAAACTCTTGGA+TGG | 0.547625 | 4.1:-81369532 | MS.gene93389:CDS |
CTGCTTATTTGAATCTGGCA+AGG | 0.557177 | 4.1:+81370648 | None:intergenic |
TGGAGCTGATATAGCACGCC+GGG | 0.560602 | 4.1:-81382499 | MS.gene93389:intron |
AGATTGCCCTCCATCAGGCC+AGG | 0.564806 | 4.1:-81377833 | MS.gene93389:CDS |
CATCCAGCAATGTGAAATGG+TGG | 0.570886 | 4.1:+81370689 | None:intergenic |
CTAAATCATATGATACAAGT+AGG | 0.572044 | 4.1:-81381368 | MS.gene93389:CDS |
AACACTTAGATTGGGTGTTG+GGG | 0.573445 | 4.1:-81374855 | MS.gene93389:intron |
AGCGACCCTTCTATGAAAGA+TGG | 0.580254 | 4.1:-81370292 | MS.gene93389:CDS |
TTGCAGGAGTACTACTAATG+AGG | 0.583101 | 4.1:-81372039 | MS.gene93389:intron |
GTATCATACAGCAAATCTCC+TGG | 0.583699 | 4.1:+81377815 | None:intergenic |
TTGTTCAGATTCAATGCAGG+GGG | 0.583802 | 4.1:-81377204 | MS.gene93389:intron |
TATGTACCACGTACTCATGA+AGG | 0.583824 | 4.1:-81369752 | MS.gene93389:CDS |
TTATTATTATGCAACATGGA+AGG | 0.585034 | 4.1:-81372156 | MS.gene93389:CDS |
AAATCTCCTGGCCTGATGGA+GGG | 0.585045 | 4.1:+81377827 | None:intergenic |
CATCATATACCGTGTACCAT+CGG | 0.585178 | 4.1:+81372133 | None:intergenic |
GATTCCTGGAGGGCGTGCAT+CGG | 0.585482 | 4.1:+81376680 | None:intergenic |
GTATATGATGTTAATAACAA+TGG | 0.587170 | 4.1:-81372120 | MS.gene93389:CDS |
CATGGAAGGCCGATGGTACA+CGG | 0.588207 | 4.1:-81372142 | MS.gene93389:CDS |
ACACATGGGCATAATCGTAC+GGG | 0.596017 | 4.1:-81376877 | MS.gene93389:CDS |
ATACTTGTTCATTGTACACA+TGG | 0.598629 | 4.1:-81376892 | MS.gene93389:CDS |
ACATACTGTTGAGCATGTAT+CGG | 0.601317 | 4.1:+81382546 | None:intergenic |
AGAAAGAAGTGATTGAACCT+AGG | 0.602136 | 4.1:-81370259 | MS.gene93389:CDS |
GAAAGAAGAAACTCTTGGAT+GGG | 0.603849 | 4.1:-81369531 | MS.gene93389:CDS |
AAACTCTCACATGAGGCAGA+TGG | 0.608691 | 4.1:-81370012 | MS.gene93389:CDS |
AACGTTATTATTATGCAACA+TGG | 0.617616 | 4.1:-81372160 | MS.gene93389:CDS |
TACTTGTTCATTGTACACAT+GGG | 0.617647 | 4.1:-81376891 | MS.gene93389:CDS |
GATACAAGTAGGCTTCCTCC+GGG | 0.618003 | 4.1:-81381357 | MS.gene93389:intron |
ATATCCATACCTGCAAATCA+GGG | 0.619101 | 4.1:+81376502 | None:intergenic |
ACCACTAGTGTGCAGGCCAG+AGG | 0.620774 | 4.1:-81373245 | MS.gene93389:intron |
CGGGTTTATAGATTCCTGGA+GGG | 0.626209 | 4.1:+81376670 | None:intergenic |
GGTGACTGTGAATGATGCAC+GGG | 0.626615 | 4.1:+81381426 | None:intergenic |
ATCCAGCAATGTGAAATGGT+GGG | 0.633078 | 4.1:+81370690 | None:intergenic |
TGATGTTAATAACAATGGAT+GGG | 0.637271 | 4.1:-81372115 | MS.gene93389:CDS |
GAATGCATCTCCGGTACCGG+AGG | 0.637362 | 4.1:-81382595 | MS.gene93389:CDS |
TGGTGAAGCAGTTCCTGACG+AGG | 0.650559 | 4.1:-81376544 | MS.gene93389:CDS |
TCATTGAATGATTCACCAAG+AGG | 0.656337 | 4.1:+81377781 | None:intergenic |
AGGTGACTGTGAATGATGCA+CGG | 0.658854 | 4.1:+81381425 | None:intergenic |
GAACCTCTATTACTGAAACA+TGG | 0.658855 | 4.1:+81370587 | None:intergenic |
TCATTAGTAGTACTCCTGCA+AGG | 0.662132 | 4.1:+81372041 | None:intergenic |
TATGCAACATGGAAGGCCGA+TGG | 0.664710 | 4.1:-81372149 | MS.gene93389:CDS |
TTTGTCCTCCTACTCCGGAG+TGG | 0.668870 | 4.1:-81376593 | MS.gene93389:CDS |
TTTGTTCAGATTCAATGCAG+GGG | 0.682706 | 4.1:-81377205 | MS.gene93389:intron |
TCGGGTTTATAGATTCCTGG+AGG | 0.683414 | 4.1:+81376669 | None:intergenic |
AGAACCTGTTGAGAGAAACT+GGG | 0.685395 | 4.1:+81373198 | None:intergenic |
TATAGTTGTTGATCATATCG+AGG | 0.691004 | 4.1:+81381405 | None:intergenic |
GTGGAGCTGATATAGCACGC+CGG | 0.692109 | 4.1:-81382500 | MS.gene93389:CDS |
AAGAGTCCTTCATGAGTACG+TGG | 0.699809 | 4.1:+81369746 | None:intergenic |
TGTCACTGGATAGTATCGAG+AGG | 0.717845 | 4.1:+81377363 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.1 | gene | 81369525 | 81382625 | 81369525 | ID=MS.gene93389 |
chr4.1 | mRNA | 81369525 | 81382625 | 81369525 | ID=MS.gene93389.t1;Parent=MS.gene93389 |
chr4.1 | exon | 81382500 | 81382625 | 81382500 | ID=MS.gene93389.t1.exon1;Parent=MS.gene93389.t1 |
chr4.1 | CDS | 81382500 | 81382625 | 81382500 | ID=cds.MS.gene93389.t1;Parent=MS.gene93389.t1 |
chr4.1 | exon | 81381358 | 81381499 | 81381358 | ID=MS.gene93389.t1.exon2;Parent=MS.gene93389.t1 |
chr4.1 | CDS | 81381358 | 81381499 | 81381358 | ID=cds.MS.gene93389.t1;Parent=MS.gene93389.t1 |
chr4.1 | exon | 81377711 | 81377862 | 81377711 | ID=MS.gene93389.t1.exon3;Parent=MS.gene93389.t1 |
chr4.1 | CDS | 81377711 | 81377862 | 81377711 | ID=cds.MS.gene93389.t1;Parent=MS.gene93389.t1 |
chr4.1 | exon | 81377330 | 81377413 | 81377330 | ID=MS.gene93389.t1.exon4;Parent=MS.gene93389.t1 |
chr4.1 | CDS | 81377330 | 81377413 | 81377330 | ID=cds.MS.gene93389.t1;Parent=MS.gene93389.t1 |
chr4.1 | exon | 81377156 | 81377218 | 81377156 | ID=MS.gene93389.t1.exon5;Parent=MS.gene93389.t1 |
chr4.1 | CDS | 81377156 | 81377218 | 81377156 | ID=cds.MS.gene93389.t1;Parent=MS.gene93389.t1 |
chr4.1 | exon | 81376825 | 81376956 | 81376825 | ID=MS.gene93389.t1.exon6;Parent=MS.gene93389.t1 |
chr4.1 | CDS | 81376825 | 81376956 | 81376825 | ID=cds.MS.gene93389.t1;Parent=MS.gene93389.t1 |
chr4.1 | exon | 81376512 | 81376718 | 81376512 | ID=MS.gene93389.t1.exon7;Parent=MS.gene93389.t1 |
chr4.1 | CDS | 81376512 | 81376718 | 81376512 | ID=cds.MS.gene93389.t1;Parent=MS.gene93389.t1 |
chr4.1 | exon | 81374856 | 81374975 | 81374856 | ID=MS.gene93389.t1.exon8;Parent=MS.gene93389.t1 |
chr4.1 | CDS | 81374856 | 81374975 | 81374856 | ID=cds.MS.gene93389.t1;Parent=MS.gene93389.t1 |
chr4.1 | exon | 81373203 | 81373252 | 81373203 | ID=MS.gene93389.t1.exon9;Parent=MS.gene93389.t1 |
chr4.1 | CDS | 81373203 | 81373252 | 81373203 | ID=cds.MS.gene93389.t1;Parent=MS.gene93389.t1 |
chr4.1 | exon | 81372040 | 81372205 | 81372040 | ID=MS.gene93389.t1.exon10;Parent=MS.gene93389.t1 |
chr4.1 | CDS | 81372040 | 81372205 | 81372040 | ID=cds.MS.gene93389.t1;Parent=MS.gene93389.t1 |
chr4.1 | exon | 81370591 | 81370728 | 81370591 | ID=MS.gene93389.t1.exon11;Parent=MS.gene93389.t1 |
chr4.1 | CDS | 81370591 | 81370728 | 81370591 | ID=cds.MS.gene93389.t1;Parent=MS.gene93389.t1 |
chr4.1 | exon | 81370190 | 81370312 | 81370190 | ID=MS.gene93389.t1.exon12;Parent=MS.gene93389.t1 |
chr4.1 | CDS | 81370190 | 81370312 | 81370190 | ID=cds.MS.gene93389.t1;Parent=MS.gene93389.t1 |
chr4.1 | exon | 81369999 | 81370097 | 81369999 | ID=MS.gene93389.t1.exon13;Parent=MS.gene93389.t1 |
chr4.1 | CDS | 81369999 | 81370097 | 81369999 | ID=cds.MS.gene93389.t1;Parent=MS.gene93389.t1 |
chr4.1 | exon | 81369700 | 81369789 | 81369700 | ID=MS.gene93389.t1.exon14;Parent=MS.gene93389.t1 |
chr4.1 | CDS | 81369700 | 81369789 | 81369700 | ID=cds.MS.gene93389.t1;Parent=MS.gene93389.t1 |
chr4.1 | exon | 81369525 | 81369593 | 81369525 | ID=MS.gene93389.t1.exon15;Parent=MS.gene93389.t1 |
chr4.1 | CDS | 81369525 | 81369593 | 81369525 | ID=cds.MS.gene93389.t1;Parent=MS.gene93389.t1 |
Gene Sequence |
Protein sequence |