Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45933.t1 | XP_024625892.1 | 97.2 | 690 | 19 | 0 | 1 | 690 | 1 | 690 | 0.00E+00 | 1308.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45933.t1 | O60942 | 35.5 | 592 | 328 | 17 | 96 | 665 | 4 | 563 | 5.6e-79 | 297.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45933.t1 | A0A072U100 | 97.2 | 690 | 19 | 0 | 1 | 690 | 1 | 690 | 0.0e+00 | 1308.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene45933 | 0.839509 | 1.52E-57 | -1.69E-46 |
| MS.gene049254 | MS.gene45933 | 0.800947 | 1.13E-48 | -1.69E-46 |
| MS.gene049404 | MS.gene45933 | 0.814629 | 1.40E-51 | -1.69E-46 |
| MS.gene049435 | MS.gene45933 | 0.803009 | 4.28E-49 | -1.69E-46 |
| MS.gene050119 | MS.gene45933 | 0.810885 | 9.23E-51 | -1.69E-46 |
| MS.gene050759 | MS.gene45933 | 0.806509 | 7.95E-50 | -1.69E-46 |
| MS.gene051198 | MS.gene45933 | 0.820036 | 8.48E-53 | -1.69E-46 |
| MS.gene051363 | MS.gene45933 | 0.828957 | 6.74E-55 | -1.69E-46 |
| MS.gene051365 | MS.gene45933 | 0.808138 | 3.59E-50 | -1.69E-46 |
| MS.gene051368 | MS.gene45933 | 0.813763 | 2.17E-51 | -1.69E-46 |
| MS.gene051744 | MS.gene45933 | 0.807977 | 3.88E-50 | -1.69E-46 |
| MS.gene052012 | MS.gene45933 | 0.801933 | 7.13E-49 | -1.69E-46 |
| MS.gene05215 | MS.gene45933 | 0.805732 | 1.16E-49 | -1.69E-46 |
| MS.gene052582 | MS.gene45933 | 0.802758 | 4.82E-49 | -1.69E-46 |
| MS.gene052954 | MS.gene45933 | 0.815504 | 8.94E-52 | -1.69E-46 |
| MS.gene053006 | MS.gene45933 | 0.820767 | 5.76E-53 | -1.69E-46 |
| MS.gene053008 | MS.gene45933 | 0.841255 | 5.31E-58 | -1.69E-46 |
| MS.gene053079 | MS.gene45933 | 0.801721 | 7.88E-49 | -1.69E-46 |
| MS.gene053080 | MS.gene45933 | 0.817917 | 2.57E-52 | -1.69E-46 |
| MS.gene053166 | MS.gene45933 | 0.821225 | 4.52E-53 | -1.69E-46 |
| MS.gene053226 | MS.gene45933 | 0.831803 | 1.36E-55 | -1.69E-46 |
| MS.gene05364 | MS.gene45933 | 0.821037 | 5.00E-53 | -1.69E-46 |
| MS.gene053931 | MS.gene45933 | 0.828497 | 8.70E-55 | -1.69E-46 |
| MS.gene054651 | MS.gene45933 | 0.839506 | 1.52E-57 | -1.69E-46 |
| MS.gene054657 | MS.gene45933 | 0.853894 | 1.77E-61 | -1.69E-46 |
| MS.gene054658 | MS.gene45933 | 0.808227 | 3.44E-50 | -1.69E-46 |
| MS.gene054994 | MS.gene45933 | 0.857554 | 1.51E-62 | -1.69E-46 |
| MS.gene055166 | MS.gene45933 | 0.800027 | 1.75E-48 | -1.69E-46 |
| MS.gene05517 | MS.gene45933 | 0.80771 | 4.43E-50 | -1.69E-46 |
| MS.gene055222 | MS.gene45933 | 0.81842 | 1.98E-52 | -1.69E-46 |
| MS.gene055512 | MS.gene45933 | 0.809099 | 2.24E-50 | -1.69E-46 |
| MS.gene055586 | MS.gene45933 | 0.837937 | 3.87E-57 | -1.69E-46 |
| MS.gene055701 | MS.gene45933 | 0.800935 | 1.14E-48 | -1.69E-46 |
| MS.gene055841 | MS.gene45933 | 0.842149 | 3.08E-58 | -1.69E-46 |
| MS.gene056366 | MS.gene45933 | 0.801441 | 8.99E-49 | -1.69E-46 |
| MS.gene056506 | MS.gene45933 | 0.811858 | 5.67E-51 | -1.69E-46 |
| MS.gene05686 | MS.gene45933 | 0.811147 | 8.10E-51 | -1.69E-46 |
| MS.gene056973 | MS.gene45933 | 0.814617 | 1.41E-51 | -1.69E-46 |
| MS.gene057060 | MS.gene45933 | 0.825882 | 3.68E-54 | -1.69E-46 |
| MS.gene057208 | MS.gene45933 | 0.84447 | 7.41E-59 | -1.69E-46 |
| MS.gene057598 | MS.gene45933 | 0.813295 | 2.75E-51 | -1.69E-46 |
| MS.gene057693 | MS.gene45933 | 0.842721 | 2.18E-58 | -1.69E-46 |
| MS.gene057869 | MS.gene45933 | 0.811819 | 5.78E-51 | -1.69E-46 |
| MS.gene058126 | MS.gene45933 | 0.81654 | 5.25E-52 | -1.69E-46 |
| MS.gene058548 | MS.gene45933 | 0.808091 | 3.67E-50 | -1.69E-46 |
| MS.gene058625 | MS.gene45933 | 0.813464 | 2.53E-51 | -1.69E-46 |
| MS.gene058783 | MS.gene45933 | 0.800728 | 1.26E-48 | -1.69E-46 |
| MS.gene058979 | MS.gene45933 | 0.837629 | 4.64E-57 | -1.69E-46 |
| MS.gene059161 | MS.gene45933 | 0.813064 | 3.09E-51 | -1.69E-46 |
| MS.gene05978 | MS.gene45933 | 0.824234 | 9.01E-54 | -1.69E-46 |
| MS.gene05979 | MS.gene45933 | 0.812493 | 4.12E-51 | -1.69E-46 |
| MS.gene059842 | MS.gene45933 | 0.812125 | 4.96E-51 | -1.69E-46 |
| MS.gene060310 | MS.gene45933 | 0.818901 | 1.54E-52 | -1.69E-46 |
| MS.gene060803 | MS.gene45933 | 0.814989 | 1.16E-51 | -1.69E-46 |
| MS.gene060935 | MS.gene45933 | 0.821504 | 3.90E-53 | -1.69E-46 |
| MS.gene060937 | MS.gene45933 | 0.801194 | 1.01E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene93389 | MS.gene45933 | PPI |
| MS.gene45933 | MS.gene052776 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45933.t1 | MTR_7g066810 | 97.536 | 690 | 17 | 0 | 1 | 690 | 1 | 690 | 0.0 | 1397 |
| MS.gene45933.t1 | MTR_4g014920 | 78.902 | 692 | 130 | 6 | 1 | 687 | 1 | 681 | 0.0 | 1077 |
| MS.gene45933.t1 | MTR_4g014920 | 79.215 | 688 | 127 | 6 | 5 | 687 | 1 | 677 | 0.0 | 1072 |
| MS.gene45933.t1 | MTR_4g014920 | 78.221 | 652 | 126 | 6 | 1 | 647 | 1 | 641 | 0.0 | 1015 |
| MS.gene45933.t1 | MTR_4g014920 | 80.069 | 582 | 100 | 6 | 1 | 577 | 1 | 571 | 0.0 | 910 |
| MS.gene45933.t1 | MTR_7g094670 | 63.003 | 646 | 217 | 9 | 53 | 690 | 2 | 633 | 0.0 | 820 |
| MS.gene45933.t1 | MTR_7g068260 | 53.205 | 156 | 23 | 2 | 474 | 629 | 29 | 134 | 1.62e-42 | 150 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45933.t1 | AT3G09100 | 66.619 | 695 | 204 | 9 | 1 | 690 | 1 | 672 | 0.0 | 909 |
| MS.gene45933.t1 | AT5G01290 | 63.623 | 690 | 214 | 11 | 5 | 690 | 1 | 657 | 0.0 | 848 |
| MS.gene45933.t1 | AT5G28210 | 56.053 | 603 | 224 | 16 | 98 | 690 | 48 | 619 | 0.0 | 643 |
| MS.gene45933.t1 | AT3G09100 | 64.435 | 478 | 148 | 5 | 1 | 474 | 1 | 460 | 0.0 | 603 |
Find 146 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACTTCCATCATATGATTTA+AGG | 0.113031 | 7.2:+45222283 | None:intergenic |
| TATATGACATGGAGCCTTTC+AGG | 0.186417 | 7.2:-45216388 | MS.gene45933:CDS |
| CTGCTTTCAGATACTCAAAT+TGG | 0.211849 | 7.2:-45219220 | MS.gene45933:CDS |
| ATGATTTAAGGATCTTATTA+TGG | 0.232235 | 7.2:+45222295 | None:intergenic |
| AATGACAAACGATGATGTTT+TGG | 0.244746 | 7.2:-45219286 | MS.gene45933:CDS |
| TCAGACCCCATGCTTTATTC+TGG | 0.261086 | 7.2:-45214773 | MS.gene45933:CDS |
| ATGGTACCGTTCATGATTCC+TGG | 0.271885 | 7.2:+45216430 | None:intergenic |
| CCACTTTCTATGTGCTCTTC+TGG | 0.283156 | 7.2:+45223277 | None:intergenic |
| TTTCGGCATGATACCTTCTA+AGG | 0.285277 | 7.2:-45221694 | MS.gene45933:CDS |
| CGCAGATGGTCTCATATTTC+AGG | 0.293837 | 7.2:-45216198 | MS.gene45933:intron |
| GCAGGACAGACTATCGTTTC+AGG | 0.301819 | 7.2:+45220382 | None:intergenic |
| CTTGAATGCCTCTCCTTTGC+CGG | 0.304993 | 7.2:-45223380 | MS.gene45933:CDS |
| TTGGACCTGTCTAAAGAAAC+TGG | 0.317774 | 7.2:+45218214 | None:intergenic |
| CCGCCATCAGATCATATATT+AGG | 0.327193 | 7.2:+45217342 | None:intergenic |
| ACATTGTGCGCATTAGATAA+TGG | 0.340793 | 7.2:+45220602 | None:intergenic |
| ATATATGATGCTAATAACTA+TGG | 0.345799 | 7.2:-45217639 | MS.gene45933:CDS |
| TACTCAGGTTTATAGATTCC+TGG | 0.355706 | 7.2:+45220442 | None:intergenic |
| ACTTGCACGGGCTTGTCATC+TGG | 0.361487 | 7.2:+45222348 | None:intergenic |
| CACCACTTCACATTACTTGA+TGG | 0.363178 | 7.2:-45217416 | MS.gene45933:CDS |
| TCATCATCGTCATCATTATC+TGG | 0.364129 | 7.2:+45220304 | None:intergenic |
| TCTTTCTTTAGATCTGATAC+TGG | 0.364157 | 7.2:+45221314 | None:intergenic |
| TGCTTTCAGATACTCAAATT+GGG | 0.364970 | 7.2:-45219219 | MS.gene45933:CDS |
| CTTGTAAGTATTGAAGTCAT+TGG | 0.367108 | 7.2:+45214673 | None:intergenic |
| TCTTATCCTGTCGGCATACA+TGG | 0.371242 | 7.2:+45214488 | None:intergenic |
| CGTTGGCTTGCAGCTTGGTC+TGG | 0.378002 | 7.2:-45221369 | MS.gene45933:intron |
| CCATTGAGATCAACAAGTTC+GGG | 0.379557 | 7.2:+45220337 | None:intergenic |
| TCACCCAATGGAACCTTAGA+AGG | 0.388575 | 7.2:+45221681 | None:intergenic |
| TGGAAATTGCATGTGTCCTC+TGG | 0.394540 | 7.2:+45218246 | None:intergenic |
| GTGTGTAATGACAATTTCTA+TGG | 0.394814 | 7.2:-45223404 | None:intergenic |
| AATGCATCTTGCTGATCATT+AGG | 0.395304 | 7.2:+45219252 | None:intergenic |
| ATGATCAGCAAGATGCATTT+CGG | 0.401431 | 7.2:-45219248 | MS.gene45933:CDS |
| ACCATTGAGATCAACAAGTT+CGG | 0.403010 | 7.2:+45220336 | None:intergenic |
| TCTCGTTTATTTCAGTCAAC+AGG | 0.403952 | 7.2:+45214523 | None:intergenic |
| AGAGGACACATGCAATTTCC+AGG | 0.406784 | 7.2:-45218244 | MS.gene45933:CDS |
| TGGTTGGATTGCCCTTCGTC+TGG | 0.413355 | 7.2:-45221726 | MS.gene45933:CDS |
| CTGAGCCGCGGCCCTTGCAT+TGG | 0.430652 | 7.2:+45221154 | None:intergenic |
| CTCTTCCACTCCGGAGTAGC+AGG | 0.432247 | 7.2:+45220364 | None:intergenic |
| CTGCTACTCCGGAGTGGAAG+AGG | 0.435765 | 7.2:-45220363 | MS.gene45933:CDS |
| GAAAGATCATCGAGTGTGCT+TGG | 0.437704 | 7.2:-45214751 | MS.gene45933:CDS |
| TTGTAAGTATTGAAGTCATT+GGG | 0.442744 | 7.2:+45214674 | None:intergenic |
| TTCAAATGAGGTTTCCATGC+AGG | 0.443363 | 7.2:-45217574 | MS.gene45933:CDS |
| AGAGGGTATCAAGCATGTTA+AGG | 0.443861 | 7.2:-45221294 | MS.gene45933:intron |
| TCATTATTGTGTCAATCTCA+TGG | 0.446224 | 7.2:+45219304 | None:intergenic |
| GGATTGCCCTTCGTCTGGCC+AGG | 0.452831 | 7.2:-45221721 | MS.gene45933:CDS |
| GTATCATGCCGAAAATTTCC+TGG | 0.453234 | 7.2:+45221703 | None:intergenic |
| CACACCCAGTTTCTTTAGAC+AGG | 0.457416 | 7.2:-45218219 | MS.gene45933:intron |
| AATGTCAATGTCTGTTACTC+AGG | 0.460206 | 7.2:-45220584 | MS.gene45933:intron |
| CCAGAAGAGCACATAGAAAG+TGG | 0.461582 | 7.2:-45223277 | MS.gene45933:CDS |
| GATACCTTCTAAGGTTCCAT+TGG | 0.465384 | 7.2:-45221685 | MS.gene45933:CDS |
| GATAGTCTGTCCTGCTACTC+CGG | 0.471499 | 7.2:-45220374 | MS.gene45933:CDS |
| TCTTCGACCTGGCCCTCAAA+AGG | 0.473582 | 7.2:+45223343 | None:intergenic |
| TCCATGTCATATATATAGTA+AGG | 0.476655 | 7.2:+45216398 | None:intergenic |
| TGATTGACAGATGAATTATC+AGG | 0.486142 | 7.2:+45221129 | None:intergenic |
| ACCACTTCACATTACTTGAT+GGG | 0.490316 | 7.2:-45217415 | MS.gene45933:CDS |
| CTCATGAAGGTCTCTTAAAG+TGG | 0.491856 | 7.2:-45215709 | MS.gene45933:CDS |
| CCCGAACTTGTTGATCTCAA+TGG | 0.492780 | 7.2:-45220337 | MS.gene45933:CDS |
| ATACCTTCTAAGGTTCCATT+GGG | 0.493016 | 7.2:-45221684 | MS.gene45933:CDS |
| TTATTTACATGCAGGTTGGT+TGG | 0.495751 | 7.2:-45221742 | MS.gene45933:intron |
| CAACTGCGTGTCTGTGATAG+AGG | 0.497145 | 7.2:-45217318 | MS.gene45933:intron |
| AGTATCAGATCTAAAGAAAG+AGG | 0.498017 | 7.2:-45221312 | MS.gene45933:CDS |
| TCATGAGTACGAGGTACATA+AGG | 0.503688 | 7.2:+45215725 | None:intergenic |
| TGATGGAAGTAAGCTTCCTC+CGG | 0.506250 | 7.2:-45222271 | MS.gene45933:CDS |
| GGGTTTATTGTTGCATTCGA+AGG | 0.510581 | 7.2:-45215468 | MS.gene45933:intron |
| TCTGCGTCGTGTGAGAGCTT+CGG | 0.511610 | 7.2:+45216215 | None:intergenic |
| AAGATCCTTAAATCATATGA+TGG | 0.512777 | 7.2:-45222288 | MS.gene45933:CDS |
| TGGAGCTGATATAGCTCGCC+GGG | 0.516184 | 7.2:-45223257 | MS.gene45933:intron |
| TGGTACCGTTCATGATTCCT+GGG | 0.518111 | 7.2:+45216431 | None:intergenic |
| AGGTAAAATATCGTCATTGA+AGG | 0.518433 | 7.2:+45221656 | None:intergenic |
| TATGAAATTCATACTTGCAA+CGG | 0.519874 | 7.2:+45220262 | None:intergenic |
| TCAAATGAGGTTTCCATGCA+GGG | 0.525334 | 7.2:-45217573 | MS.gene45933:CDS |
| AAAGAAACTGGGTGTGACCC+TGG | 0.527134 | 7.2:+45218226 | None:intergenic |
| ATCTTTCCAGAATAAAGCAT+GGG | 0.532742 | 7.2:+45214767 | None:intergenic |
| ACATCATTTGCAACCCTGCA+TGG | 0.534363 | 7.2:+45217560 | None:intergenic |
| AAAGGATCTTCATCTTCCTC+CGG | 0.535591 | 7.2:+45223361 | None:intergenic |
| GCCTTCCCATGTATGCCGAC+AGG | 0.536050 | 7.2:-45214494 | MS.gene45933:CDS |
| ATATGACATGGAGCCTTTCA+GGG | 0.538294 | 7.2:-45216387 | MS.gene45933:intron |
| TCGGGAGCCCTCTTCCACTC+CGG | 0.539359 | 7.2:+45220355 | None:intergenic |
| ATCTTCCACCGCTCACAGAA+AGG | 0.545618 | 7.2:+45216476 | None:intergenic |
| AGGTGGCTGTGATACTTGCA+CGG | 0.546527 | 7.2:+45222335 | None:intergenic |
| GCTTTCAGATACTCAAATTG+GGG | 0.546530 | 7.2:-45219218 | MS.gene45933:CDS |
| TATAATGAATCAATATACTC+AGG | 0.549904 | 7.2:+45220427 | None:intergenic |
| TCTTCATCTTCCTCCGGCAA+AGG | 0.550629 | 7.2:+45223367 | None:intergenic |
| TCAGAAATGCATACCCTGAA+AGG | 0.550897 | 7.2:+45216374 | None:intergenic |
| GCTATCGATTCTTATCCTGT+CGG | 0.551715 | 7.2:+45214479 | None:intergenic |
| TTCAGTCAACAGGACATCCT+CGG | 0.555159 | 7.2:+45214533 | None:intergenic |
| ATACCTAATATATGATCTGA+TGG | 0.556235 | 7.2:-45217345 | MS.gene45933:CDS |
| TAGATCCAATGCAAGGGCCG+CGG | 0.559315 | 7.2:-45221159 | MS.gene45933:CDS |
| TGCTACTCCGGAGTGGAAGA+GGG | 0.559470 | 7.2:-45220362 | MS.gene45933:CDS |
| CATACTTGCAACGGAGGACC+TGG | 0.559887 | 7.2:+45220271 | None:intergenic |
| GCAAAGGACATCATGTAGCT+AGG | 0.560997 | 7.2:-45214458 | MS.gene45933:CDS |
| ATCTTCCTCCGGCAAAGGAG+AGG | 0.560999 | 7.2:+45223372 | None:intergenic |
| AAAGATCATCGAGTGTGCTT+GGG | 0.561891 | 7.2:-45214750 | MS.gene45933:CDS |
| TCCTGTCGGCATACATGGGA+AGG | 0.564005 | 7.2:+45214493 | None:intergenic |
| AATGATGACGATGATGATGA+TGG | 0.565460 | 7.2:-45220298 | MS.gene45933:CDS |
| TATGCAACATGGAAAGCTGA+TGG | 0.568109 | 7.2:-45217668 | MS.gene45933:CDS |
| AGCAGCGGCCTTTCTGTGAG+CGG | 0.568282 | 7.2:-45216484 | MS.gene45933:intron |
| AAGCTCTCACACGACGCAGA+TGG | 0.569710 | 7.2:-45216212 | MS.gene45933:CDS |
| AAAATTTCCTGGCCAGACGA+AGG | 0.570217 | 7.2:+45221714 | None:intergenic |
| GCGCATTATACTCTTCGACC+TGG | 0.572801 | 7.2:+45223332 | None:intergenic |
| AAATTTCCTGGCCAGACGAA+GGG | 0.572890 | 7.2:+45221715 | None:intergenic |
| GGTGGCTGTGATACTTGCAC+GGG | 0.575874 | 7.2:+45222336 | None:intergenic |
| CCCCATCAAGTAATGTGAAG+TGG | 0.580537 | 7.2:+45217414 | None:intergenic |
| ACACATGGTCACAATCGTAC+AGG | 0.581359 | 7.2:-45220637 | MS.gene45933:CDS |
| ATGATGCTAATAACTATGGA+TGG | 0.584416 | 7.2:-45217635 | MS.gene45933:CDS |
| GTGCAAGTATCACAGCCACC+TGG | 0.585488 | 7.2:-45222333 | MS.gene45933:CDS |
| TATGTACCTCGTACTCATGA+AGG | 0.587394 | 7.2:-45215722 | MS.gene45933:CDS |
| TGTGGTTTAGATCCAATGCA+AGG | 0.587594 | 7.2:-45221166 | MS.gene45933:intron |
| AGCGGCCTTTCTGTGAGCGG+TGG | 0.587890 | 7.2:-45216481 | MS.gene45933:CDS |
| GATGATGATGATGGAGTACC+AGG | 0.588112 | 7.2:-45220289 | MS.gene45933:CDS |
| TGACTTCAATACTTACAAGA+AGG | 0.590135 | 7.2:-45214669 | MS.gene45933:intron |
| CTTATCCTGTCGGCATACAT+GGG | 0.592745 | 7.2:+45214489 | None:intergenic |
| GATGGAAGTAAGCTTCCTCC+GGG | 0.598868 | 7.2:-45222270 | MS.gene45933:intron |
| TCATTGAAGGATTCACCCAA+TGG | 0.602544 | 7.2:+45221669 | None:intergenic |
| GTGGAGCTGATATAGCTCGC+CGG | 0.603735 | 7.2:-45223258 | MS.gene45933:CDS |
| GAATGCCTCTCCTTTGCCGG+AGG | 0.607982 | 7.2:-45223377 | MS.gene45933:CDS |
| CCACTTCACATTACTTGATG+GGG | 0.609587 | 7.2:-45217414 | MS.gene45933:CDS |
| TTTCTGAATGTGCAGGCCAG+AGG | 0.611157 | 7.2:-45218262 | MS.gene45933:intron |
| TCTGAAATGATTAGGTGAGG+AGG | 0.612439 | 7.2:-45216289 | MS.gene45933:intron |
| GATCTTTCCAGAATAAAGCA+TGG | 0.617360 | 7.2:+45214766 | None:intergenic |
| GTGGTTTAGATCCAATGCAA+GGG | 0.629105 | 7.2:-45221165 | MS.gene45933:intron |
| ATACTTGTTCATTGTACACA+TGG | 0.630429 | 7.2:-45220652 | MS.gene45933:CDS |
| GAAATTCATACTTGCAACGG+AGG | 0.631537 | 7.2:+45220265 | None:intergenic |
| TCCTTACTATATATATGACA+TGG | 0.631783 | 7.2:-45216399 | MS.gene45933:CDS |
| AGGATAAGAATCGATAGCAA+AGG | 0.635554 | 7.2:-45214474 | MS.gene45933:CDS |
| TATAGTAAGGATGTTTGCGA+TGG | 0.637258 | 7.2:+45216411 | None:intergenic |
| GTATCAGATCTAAAGAAAGA+GGG | 0.640851 | 7.2:-45221311 | MS.gene45933:CDS |
| TGTCAATCACTTTGTGTACG+AGG | 0.643052 | 7.2:-45221115 | MS.gene45933:intron |
| TCTGTCCTGCTACTCCGGAG+TGG | 0.644223 | 7.2:-45220369 | MS.gene45933:CDS |
| TGGACCTGTCTAAAGAAACT+GGG | 0.648364 | 7.2:+45218215 | None:intergenic |
| GAGGACACATGCAATTTCCA+GGG | 0.649406 | 7.2:-45218243 | MS.gene45933:CDS |
| AGAAAGAAGTGATTGAACCC+AGG | 0.649900 | 7.2:-45216448 | MS.gene45933:CDS |
| ATGTTGCATAGTAGTAACGC+TGG | 0.651191 | 7.2:+45217681 | None:intergenic |
| AACGTGAAGAAAGAAAGAAA+CGG | 0.652918 | 7.2:-45222386 | MS.gene45933:CDS |
| GCGCAATATACTCTTCGACC+TGG | 0.662702 | 7.2:+45223299 | None:intergenic |
| AGCGTTACTACTATGCAACA+TGG | 0.671428 | 7.2:-45217679 | MS.gene45933:CDS |
| CTTTCAGATACTCAAATTGG+GGG | 0.674339 | 7.2:-45219217 | MS.gene45933:CDS |
| AATTATCAGGTACTGAGCCG+CGG | 0.676080 | 7.2:+45221142 | None:intergenic |
| TGTCGGCATACATGGGAAGG+CGG | 0.676239 | 7.2:+45214496 | None:intergenic |
| ATCATCGAGTGTGCTTGGGA+TGG | 0.677706 | 7.2:-45214746 | MS.gene45933:CDS |
| TTGAACCCAGGAATCATGAA+CGG | 0.698189 | 7.2:-45216436 | MS.gene45933:CDS |
| TCTTTCCAGAATAAAGCATG+GGG | 0.710208 | 7.2:+45214768 | None:intergenic |
| CCTAATATATGATCTGATGG+CGG | 0.716701 | 7.2:-45217342 | MS.gene45933:CDS |
| AAGAGACCTTCATGAGTACG+AGG | 0.716715 | 7.2:+45215716 | None:intergenic |
| TCAGGTTTATAGATTCCTGG+AGG | 0.718001 | 7.2:+45220445 | None:intergenic |
| GGGATGGTGATAGAAACGAA+TGG | 0.727257 | 7.2:-45214730 | MS.gene45933:CDS |
| CATAAAAGACAATATCACCG+AGG | 0.749317 | 7.2:-45214550 | MS.gene45933:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 45214449 | 45223419 | 45214449 | ID=MS.gene45933 |
| chr7.2 | mRNA | 45214449 | 45223419 | 45214449 | ID=MS.gene45933.t1;Parent=MS.gene45933 |
| chr7.2 | exon | 45223258 | 45223419 | 45223258 | ID=MS.gene45933.t1.exon1;Parent=MS.gene45933.t1 |
| chr7.2 | CDS | 45223258 | 45223419 | 45223258 | ID=cds.MS.gene45933.t1;Parent=MS.gene45933.t1 |
| chr7.2 | exon | 45222271 | 45222409 | 45222271 | ID=MS.gene45933.t1.exon2;Parent=MS.gene45933.t1 |
| chr7.2 | CDS | 45222271 | 45222409 | 45222271 | ID=cds.MS.gene45933.t1;Parent=MS.gene45933.t1 |
| chr7.2 | exon | 45221599 | 45221750 | 45221599 | ID=MS.gene45933.t1.exon3;Parent=MS.gene45933.t1 |
| chr7.2 | CDS | 45221599 | 45221750 | 45221599 | ID=cds.MS.gene45933.t1;Parent=MS.gene45933.t1 |
| chr7.2 | exon | 45221295 | 45221378 | 45221295 | ID=MS.gene45933.t1.exon4;Parent=MS.gene45933.t1 |
| chr7.2 | CDS | 45221295 | 45221378 | 45221295 | ID=cds.MS.gene45933.t1;Parent=MS.gene45933.t1 |
| chr7.2 | exon | 45221116 | 45221178 | 45221116 | ID=MS.gene45933.t1.exon5;Parent=MS.gene45933.t1 |
| chr7.2 | CDS | 45221116 | 45221178 | 45221116 | ID=cds.MS.gene45933.t1;Parent=MS.gene45933.t1 |
| chr7.2 | exon | 45220585 | 45220716 | 45220585 | ID=MS.gene45933.t1.exon6;Parent=MS.gene45933.t1 |
| chr7.2 | CDS | 45220585 | 45220716 | 45220585 | ID=cds.MS.gene45933.t1;Parent=MS.gene45933.t1 |
| chr7.2 | exon | 45220276 | 45220494 | 45220276 | ID=MS.gene45933.t1.exon7;Parent=MS.gene45933.t1 |
| chr7.2 | CDS | 45220276 | 45220494 | 45220276 | ID=cds.MS.gene45933.t1;Parent=MS.gene45933.t1 |
| chr7.2 | exon | 45219212 | 45219331 | 45219212 | ID=MS.gene45933.t1.exon8;Parent=MS.gene45933.t1 |
| chr7.2 | CDS | 45219212 | 45219331 | 45219212 | ID=cds.MS.gene45933.t1;Parent=MS.gene45933.t1 |
| chr7.2 | exon | 45218220 | 45218269 | 45218220 | ID=MS.gene45933.t1.exon9;Parent=MS.gene45933.t1 |
| chr7.2 | CDS | 45218220 | 45218269 | 45218220 | ID=cds.MS.gene45933.t1;Parent=MS.gene45933.t1 |
| chr7.2 | exon | 45217562 | 45217724 | 45217562 | ID=MS.gene45933.t1.exon10;Parent=MS.gene45933.t1 |
| chr7.2 | CDS | 45217562 | 45217724 | 45217562 | ID=cds.MS.gene45933.t1;Parent=MS.gene45933.t1 |
| chr7.2 | exon | 45217319 | 45217456 | 45217319 | ID=MS.gene45933.t1.exon11;Parent=MS.gene45933.t1 |
| chr7.2 | CDS | 45217319 | 45217456 | 45217319 | ID=cds.MS.gene45933.t1;Parent=MS.gene45933.t1 |
| chr7.2 | exon | 45216388 | 45216501 | 45216388 | ID=MS.gene45933.t1.exon12;Parent=MS.gene45933.t1 |
| chr7.2 | CDS | 45216388 | 45216501 | 45216388 | ID=cds.MS.gene45933.t1;Parent=MS.gene45933.t1 |
| chr7.2 | exon | 45216199 | 45216297 | 45216199 | ID=MS.gene45933.t1.exon13;Parent=MS.gene45933.t1 |
| chr7.2 | CDS | 45216199 | 45216297 | 45216199 | ID=cds.MS.gene45933.t1;Parent=MS.gene45933.t1 |
| chr7.2 | exon | 45215670 | 45215759 | 45215670 | ID=MS.gene45933.t1.exon14;Parent=MS.gene45933.t1 |
| chr7.2 | CDS | 45215670 | 45215759 | 45215670 | ID=cds.MS.gene45933.t1;Parent=MS.gene45933.t1 |
| chr7.2 | exon | 45215469 | 45215550 | 45215469 | ID=MS.gene45933.t1.exon15;Parent=MS.gene45933.t1 |
| chr7.2 | CDS | 45215469 | 45215550 | 45215469 | ID=cds.MS.gene45933.t1;Parent=MS.gene45933.t1 |
| chr7.2 | exon | 45214670 | 45214800 | 45214670 | ID=MS.gene45933.t1.exon16;Parent=MS.gene45933.t1 |
| chr7.2 | CDS | 45214670 | 45214800 | 45214670 | ID=cds.MS.gene45933.t1;Parent=MS.gene45933.t1 |
| chr7.2 | exon | 45214449 | 45214583 | 45214449 | ID=MS.gene45933.t1.exon17;Parent=MS.gene45933.t1 |
| chr7.2 | CDS | 45214449 | 45214583 | 45214449 | ID=cds.MS.gene45933.t1;Parent=MS.gene45933.t1 |
| Gene Sequence |
| Protein sequence |
