Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33466.t1 | XP_003604599.2 | 99.5 | 625 | 2 | 1 | 17 | 641 | 65 | 688 | 0.00E+00 | 1295 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33466.t1 | O60942 | 33.8 | 609 | 315 | 19 | 43 | 612 | 4 | 563 | 1.1e-76 | 289.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33466.t1 | G7JLW2 | 99.5 | 625 | 2 | 1 | 17 | 641 | 61 | 684 | 0.0e+00 | 1295.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene33466 | 0.878219 | 3.35E-69 | -1.69E-46 |
| MS.gene049159 | MS.gene33466 | 0.815077 | 1.11E-51 | -1.69E-46 |
| MS.gene049254 | MS.gene33466 | 0.854673 | 1.05E-61 | -1.69E-46 |
| MS.gene049283 | MS.gene33466 | 0.843287 | 1.54E-58 | -1.69E-46 |
| MS.gene049343 | MS.gene33466 | 0.810069 | 1.38E-50 | -1.69E-46 |
| MS.gene049350 | MS.gene33466 | 0.824516 | 7.74E-54 | -1.69E-46 |
| MS.gene049368 | MS.gene33466 | 0.842042 | 3.29E-58 | -1.69E-46 |
| MS.gene049404 | MS.gene33466 | 0.812909 | 3.34E-51 | -1.69E-46 |
| MS.gene049435 | MS.gene33466 | 0.818323 | 2.08E-52 | -1.69E-46 |
| MS.gene049499 | MS.gene33466 | 0.828255 | 9.95E-55 | -1.69E-46 |
| MS.gene049711 | MS.gene33466 | 0.826634 | 2.44E-54 | -1.69E-46 |
| MS.gene049744 | MS.gene33466 | 0.837952 | 3.84E-57 | -1.69E-46 |
| MS.gene049850 | MS.gene33466 | 0.805268 | 1.45E-49 | -1.69E-46 |
| MS.gene049983 | MS.gene33466 | 0.83853 | 2.72E-57 | -1.69E-46 |
| MS.gene050213 | MS.gene33466 | 0.803409 | 3.53E-49 | -1.69E-46 |
| MS.gene050442 | MS.gene33466 | 0.806658 | 7.39E-50 | -1.69E-46 |
| MS.gene050551 | MS.gene33466 | 0.826679 | 2.38E-54 | -1.69E-46 |
| MS.gene050556 | MS.gene33466 | 0.822996 | 1.76E-53 | -1.69E-46 |
| MS.gene050559 | MS.gene33466 | 0.832789 | 7.73E-56 | -1.69E-46 |
| MS.gene050561 | MS.gene33466 | 0.837685 | 4.49E-57 | -1.69E-46 |
| MS.gene050562 | MS.gene33466 | 0.833043 | 6.69E-56 | -1.69E-46 |
| MS.gene050654 | MS.gene33466 | 0.835725 | 1.42E-56 | -1.69E-46 |
| MS.gene050759 | MS.gene33466 | 0.82918 | 5.95E-55 | -1.69E-46 |
| MS.gene050962 | MS.gene33466 | 0.81698 | 4.18E-52 | -1.69E-46 |
| MS.gene051198 | MS.gene33466 | 0.81892 | 1.52E-52 | -1.69E-46 |
| MS.gene051209 | MS.gene33466 | 0.800613 | 1.33E-48 | -1.69E-46 |
| MS.gene051247 | MS.gene33466 | 0.825151 | 5.48E-54 | -1.69E-46 |
| MS.gene051279 | MS.gene33466 | 0.835217 | 1.91E-56 | -1.69E-46 |
| MS.gene051332 | MS.gene33466 | 0.815568 | 8.65E-52 | -1.69E-46 |
| MS.gene051343 | MS.gene33466 | 0.806571 | 7.71E-50 | -1.69E-46 |
| MS.gene051363 | MS.gene33466 | 0.806258 | 8.98E-50 | -1.69E-46 |
| MS.gene051490 | MS.gene33466 | 0.818623 | 1.78E-52 | -1.69E-46 |
| MS.gene051676 | MS.gene33466 | 0.803576 | 3.26E-49 | -1.69E-46 |
| MS.gene051720 | MS.gene33466 | 0.814012 | 1.91E-51 | -1.69E-46 |
| MS.gene051744 | MS.gene33466 | 0.864932 | 8.52E-65 | -1.69E-46 |
| MS.gene051800 | MS.gene33466 | 0.826111 | 3.25E-54 | -1.69E-46 |
| MS.gene051975 | MS.gene33466 | 0.83821 | 3.29E-57 | -1.69E-46 |
| MS.gene052012 | MS.gene33466 | 0.825496 | 4.54E-54 | -1.69E-46 |
| MS.gene052016 | MS.gene33466 | 0.815413 | 9.36E-52 | -1.69E-46 |
| MS.gene052108 | MS.gene33466 | 0.804648 | 1.95E-49 | -1.69E-46 |
| MS.gene05215 | MS.gene33466 | 0.801618 | 8.27E-49 | -1.69E-46 |
| MS.gene052168 | MS.gene33466 | 0.843643 | 1.23E-58 | -1.69E-46 |
| MS.gene052307 | MS.gene33466 | 0.828026 | 1.13E-54 | -1.69E-46 |
| MS.gene052311 | MS.gene33466 | 0.80023 | 1.59E-48 | -1.69E-46 |
| MS.gene052463 | MS.gene33466 | 0.848513 | 5.84E-60 | -1.69E-46 |
| MS.gene052493 | MS.gene33466 | 0.807318 | 5.36E-50 | -1.69E-46 |
| MS.gene052516 | MS.gene33466 | 0.806427 | 8.27E-50 | -1.69E-46 |
| MS.gene052533 | MS.gene33466 | 0.803948 | 2.73E-49 | -1.69E-46 |
| MS.gene052582 | MS.gene33466 | 0.825623 | 4.24E-54 | -1.69E-46 |
| MS.gene052584 | MS.gene33466 | 0.833303 | 5.76E-56 | -1.69E-46 |
| MS.gene052609 | MS.gene33466 | 0.864369 | 1.28E-64 | -1.69E-46 |
| MS.gene052669 | MS.gene33466 | 0.815317 | 9.84E-52 | -1.69E-46 |
| MS.gene052674 | MS.gene33466 | 0.803005 | 4.29E-49 | -1.69E-46 |
| MS.gene052675 | MS.gene33466 | 0.8076 | 4.67E-50 | -1.69E-46 |
| MS.gene052677 | MS.gene33466 | 0.809362 | 1.96E-50 | -1.69E-46 |
| MS.gene052773 | MS.gene33466 | 0.865177 | 7.14E-65 | -1.69E-46 |
| MS.gene052775 | MS.gene33466 | 0.935931 | 3.89E-97 | -1.69E-46 |
| MS.gene052776 | MS.gene33466 | 0.898301 | 6.06E-77 | -1.69E-46 |
| MS.gene052932 | MS.gene33466 | 0.800026 | 1.75E-48 | -1.69E-46 |
| MS.gene053079 | MS.gene33466 | 0.883174 | 5.61E-71 | -1.69E-46 |
| MS.gene05308 | MS.gene33466 | 0.806107 | 9.66E-50 | -1.69E-46 |
| MS.gene053151 | MS.gene33466 | 0.811585 | 6.50E-51 | -1.69E-46 |
| MS.gene053226 | MS.gene33466 | 0.889237 | 2.90E-73 | -1.69E-46 |
| MS.gene053296 | MS.gene33466 | 0.818355 | 2.05E-52 | -1.69E-46 |
| MS.gene053621 | MS.gene33466 | 0.818328 | 2.08E-52 | -1.69E-46 |
| MS.gene05364 | MS.gene33466 | 0.825984 | 3.48E-54 | -1.69E-46 |
| MS.gene053931 | MS.gene33466 | 0.823249 | 1.53E-53 | -1.69E-46 |
| MS.gene054139 | MS.gene33466 | 0.810643 | 1.04E-50 | -1.69E-46 |
| MS.gene054178 | MS.gene33466 | 0.809483 | 1.85E-50 | -1.69E-46 |
| MS.gene054479 | MS.gene33466 | 0.855456 | 6.23E-62 | -1.69E-46 |
| MS.gene054576 | MS.gene33466 | 0.876336 | 1.51E-68 | -1.69E-46 |
| MS.gene05458 | MS.gene33466 | 0.833063 | 6.61E-56 | -1.69E-46 |
| MS.gene054641 | MS.gene33466 | 0.812885 | 3.38E-51 | -1.69E-46 |
| MS.gene054651 | MS.gene33466 | 0.857924 | 1.17E-62 | -1.69E-46 |
| MS.gene054775 | MS.gene33466 | 0.823666 | 1.22E-53 | -1.69E-46 |
| MS.gene054892 | MS.gene33466 | 0.822361 | 2.47E-53 | -1.69E-46 |
| MS.gene054893 | MS.gene33466 | 0.820978 | 5.15E-53 | -1.69E-46 |
| MS.gene054943 | MS.gene33466 | 0.830364 | 3.06E-55 | -1.69E-46 |
| MS.gene054991 | MS.gene33466 | 0.804126 | 2.51E-49 | -1.69E-46 |
| MS.gene05517 | MS.gene33466 | 0.815946 | 7.12E-52 | -1.69E-46 |
| MS.gene055222 | MS.gene33466 | 0.800109 | 1.68E-48 | -1.69E-46 |
| MS.gene055311 | MS.gene33466 | 0.80119 | 1.01E-48 | -1.69E-46 |
| MS.gene055313 | MS.gene33466 | 0.835862 | 1.31E-56 | -1.69E-46 |
| MS.gene055386 | MS.gene33466 | 0.830612 | 2.66E-55 | -1.69E-46 |
| MS.gene05539 | MS.gene33466 | 0.815473 | 9.08E-52 | -1.69E-46 |
| MS.gene055465 | MS.gene33466 | 0.806269 | 8.93E-50 | -1.69E-46 |
| MS.gene055469 | MS.gene33466 | 0.813963 | 1.96E-51 | -1.69E-46 |
| MS.gene055512 | MS.gene33466 | 0.801207 | 1.00E-48 | -1.69E-46 |
| MS.gene055513 | MS.gene33466 | 0.877954 | 4.15E-69 | -1.69E-46 |
| MS.gene055586 | MS.gene33466 | 0.82247 | 2.33E-53 | -1.69E-46 |
| MS.gene055841 | MS.gene33466 | 0.811104 | 8.27E-51 | -1.69E-46 |
| MS.gene055864 | MS.gene33466 | 0.852696 | 3.90E-61 | -1.69E-46 |
| MS.gene055926 | MS.gene33466 | 0.82213 | 2.79E-53 | -1.69E-46 |
| MS.gene056045 | MS.gene33466 | 0.863441 | 2.48E-64 | -1.69E-46 |
| MS.gene05604 | MS.gene33466 | 0.80666 | 7.38E-50 | -1.69E-46 |
| MS.gene056050 | MS.gene33466 | 0.855229 | 7.26E-62 | -1.69E-46 |
| MS.gene056173 | MS.gene33466 | 0.816925 | 4.30E-52 | -1.69E-46 |
| MS.gene056174 | MS.gene33466 | 0.839247 | 1.78E-57 | -1.69E-46 |
| MS.gene056181 | MS.gene33466 | 0.845792 | 3.26E-59 | -1.69E-46 |
| MS.gene056308 | MS.gene33466 | 0.845525 | 3.85E-59 | -1.69E-46 |
| MS.gene056366 | MS.gene33466 | 0.803635 | 3.17E-49 | -1.69E-46 |
| MS.gene056390 | MS.gene33466 | 0.809461 | 1.87E-50 | -1.69E-46 |
| MS.gene056506 | MS.gene33466 | 0.806792 | 6.93E-50 | -1.69E-46 |
| MS.gene056507 | MS.gene33466 | 0.854107 | 1.53E-61 | -1.69E-46 |
| MS.gene056509 | MS.gene33466 | 0.844283 | 8.32E-59 | -1.69E-46 |
| MS.gene056519 | MS.gene33466 | 0.820646 | 6.15E-53 | -1.69E-46 |
| MS.gene056699 | MS.gene33466 | 0.832322 | 1.01E-55 | -1.69E-46 |
| MS.gene056776 | MS.gene33466 | 0.828366 | 9.36E-55 | -1.69E-46 |
| MS.gene056779 | MS.gene33466 | 0.812952 | 3.27E-51 | -1.69E-46 |
| MS.gene056831 | MS.gene33466 | 0.80722 | 5.62E-50 | -1.69E-46 |
| MS.gene05686 | MS.gene33466 | 0.870857 | 1.06E-66 | -1.69E-46 |
| MS.gene05690 | MS.gene33466 | 0.803875 | 2.83E-49 | -1.69E-46 |
| MS.gene056973 | MS.gene33466 | 0.818632 | 1.77E-52 | -1.69E-46 |
| MS.gene056986 | MS.gene33466 | 0.806403 | 8.37E-50 | -1.69E-46 |
| MS.gene057034 | MS.gene33466 | 0.864156 | 1.49E-64 | -1.69E-46 |
| MS.gene057102 | MS.gene33466 | 0.808954 | 2.40E-50 | -1.69E-46 |
| MS.gene057155 | MS.gene33466 | 0.821645 | 3.62E-53 | -1.69E-46 |
| MS.gene057208 | MS.gene33466 | 0.83744 | 5.19E-57 | -1.69E-46 |
| MS.gene057360 | MS.gene33466 | 0.819733 | 9.95E-53 | -1.69E-46 |
| MS.gene057444 | MS.gene33466 | 0.80582 | 1.11E-49 | -1.69E-46 |
| MS.gene057598 | MS.gene33466 | 0.830021 | 3.71E-55 | -1.69E-46 |
| MS.gene057693 | MS.gene33466 | 0.803866 | 2.84E-49 | -1.69E-46 |
| MS.gene057855 | MS.gene33466 | 0.829447 | 5.12E-55 | -1.69E-46 |
| MS.gene057869 | MS.gene33466 | 0.812301 | 4.54E-51 | -1.69E-46 |
| MS.gene057915 | MS.gene33466 | 0.850518 | 1.61E-60 | -1.69E-46 |
| MS.gene058010 | MS.gene33466 | 0.838761 | 2.37E-57 | -1.69E-46 |
| MS.gene058081 | MS.gene33466 | 0.812807 | 3.52E-51 | -1.69E-46 |
| MS.gene058289 | MS.gene33466 | 0.866942 | 1.97E-65 | -1.69E-46 |
| MS.gene058292 | MS.gene33466 | 0.819094 | 1.39E-52 | -1.69E-46 |
| MS.gene058355 | MS.gene33466 | 0.811529 | 6.69E-51 | -1.69E-46 |
| MS.gene058427 | MS.gene33466 | 0.806081 | 9.78E-50 | -1.69E-46 |
| MS.gene05847 | MS.gene33466 | 0.812828 | 3.48E-51 | -1.69E-46 |
| MS.gene058625 | MS.gene33466 | 0.824333 | 8.54E-54 | -1.69E-46 |
| MS.gene058638 | MS.gene33466 | 0.80229 | 6.02E-49 | -1.69E-46 |
| MS.gene058639 | MS.gene33466 | 0.81302 | 3.16E-51 | -1.69E-46 |
| MS.gene058649 | MS.gene33466 | 0.800705 | 1.27E-48 | -1.69E-46 |
| MS.gene058668 | MS.gene33466 | 0.809687 | 1.67E-50 | -1.69E-46 |
| MS.gene058681 | MS.gene33466 | 0.825544 | 4.42E-54 | -1.69E-46 |
| MS.gene058829 | MS.gene33466 | 0.807212 | 5.64E-50 | -1.69E-46 |
| MS.gene058919 | MS.gene33466 | 0.81428 | 1.67E-51 | -1.69E-46 |
| MS.gene058979 | MS.gene33466 | 0.832798 | 7.69E-56 | -1.69E-46 |
| MS.gene05897 | MS.gene33466 | 0.823588 | 1.28E-53 | -1.69E-46 |
| MS.gene059170 | MS.gene33466 | 0.802391 | 5.74E-49 | -1.69E-46 |
| MS.gene059331 | MS.gene33466 | 0.810497 | 1.12E-50 | -1.69E-46 |
| MS.gene059335 | MS.gene33466 | 0.801038 | 1.09E-48 | -1.69E-46 |
| MS.gene059439 | MS.gene33466 | 0.831177 | 1.94E-55 | -1.69E-46 |
| MS.gene059570 | MS.gene33466 | 0.852699 | 3.89E-61 | -1.69E-46 |
| MS.gene059625 | MS.gene33466 | 0.82019 | 7.82E-53 | -1.69E-46 |
| MS.gene059725 | MS.gene33466 | 0.849696 | 2.74E-60 | -1.69E-46 |
| MS.gene05985 | MS.gene33466 | -0.81505 | 1.13E-51 | -1.69E-46 |
| MS.gene059965 | MS.gene33466 | 0.847482 | 1.12E-59 | -1.69E-46 |
| MS.gene060191 | MS.gene33466 | 0.802032 | 6.80E-49 | -1.69E-46 |
| MS.gene060365 | MS.gene33466 | 0.820218 | 7.70E-53 | -1.69E-46 |
| MS.gene060373 | MS.gene33466 | 0.815065 | 1.12E-51 | -1.69E-46 |
| MS.gene060435 | MS.gene33466 | 0.842722 | 2.17E-58 | -1.69E-46 |
| MS.gene06052 | MS.gene33466 | 0.833516 | 5.10E-56 | -1.69E-46 |
| MS.gene060637 | MS.gene33466 | 0.800695 | 1.28E-48 | -1.69E-46 |
| MS.gene060777 | MS.gene33466 | 0.836119 | 1.13E-56 | -1.69E-46 |
| MS.gene060785 | MS.gene33466 | 0.803482 | 3.41E-49 | -1.69E-46 |
| MS.gene060840 | MS.gene33466 | 0.80605 | 9.93E-50 | -1.69E-46 |
| MS.gene060932 | MS.gene33466 | 0.804564 | 2.03E-49 | -1.69E-46 |
| MS.gene060933 | MS.gene33466 | 0.870131 | 1.84E-66 | -1.69E-46 |
| MS.gene060935 | MS.gene33466 | 0.852946 | 3.31E-61 | -1.69E-46 |
| MS.gene060937 | MS.gene33466 | 0.857645 | 1.42E-62 | -1.69E-46 |
| MS.gene061100 | MS.gene33466 | 0.820095 | 8.22E-53 | -1.69E-46 |
| MS.gene061160 | MS.gene33466 | 0.802145 | 6.45E-49 | -1.69E-46 |
| MS.gene061188 | MS.gene33466 | 0.804502 | 2.09E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene93389 | MS.gene33466 | PPI |
| MS.gene33466 | MS.gene052776 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33466.t1 | MTR_4g014920 | 99.377 | 642 | 2 | 2 | 1 | 641 | 48 | 688 | 0.0 | 1328 |
| MS.gene33466.t1 | MTR_4g014920 | 99.377 | 642 | 2 | 2 | 1 | 641 | 44 | 684 | 0.0 | 1328 |
| MS.gene33466.t1 | MTR_4g014920 | 99.328 | 595 | 2 | 2 | 1 | 594 | 48 | 641 | 0.0 | 1234 |
| MS.gene33466.t1 | MTR_4g014920 | 99.237 | 524 | 2 | 2 | 1 | 523 | 48 | 570 | 0.0 | 1088 |
| MS.gene33466.t1 | MTR_7g066810 | 80.480 | 625 | 113 | 5 | 14 | 634 | 68 | 687 | 0.0 | 1031 |
| MS.gene33466.t1 | MTR_7g094670 | 66.174 | 609 | 194 | 7 | 36 | 641 | 33 | 632 | 0.0 | 835 |
| MS.gene33466.t1 | MTR_7g068260 | 42.675 | 157 | 37 | 2 | 418 | 574 | 29 | 132 | 5.32e-30 | 115 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33466.t1 | AT3G09100 | 71.337 | 621 | 165 | 6 | 16 | 630 | 55 | 668 | 0.0 | 911 |
| MS.gene33466.t1 | AT5G01290 | 67.044 | 619 | 190 | 6 | 16 | 630 | 45 | 653 | 0.0 | 842 |
| MS.gene33466.t1 | AT5G28210 | 57.143 | 595 | 216 | 15 | 45 | 629 | 48 | 613 | 0.0 | 650 |
| MS.gene33466.t1 | AT3G09100 | 70.588 | 408 | 113 | 4 | 16 | 418 | 55 | 460 | 0.0 | 593 |
Find 133 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTACTTGTATCATATGATTT+AGG | 0.203328 | 4.4:+86049505 | None:intergenic |
| TATACTTCTTTGACTGCTTT+TGG | 0.245704 | 4.4:+86044571 | None:intergenic |
| CTCTCCTGCTTATTTGAATC+TGG | 0.252109 | 4.4:+86038411 | None:intergenic |
| TTGCTGTATGATACCTTCTA+AGG | 0.257285 | 4.4:-86045463 | MS.gene33466:CDS |
| GGCAGATGGTCTTATATTTC+AGG | 0.279436 | 4.4:-86037766 | MS.gene33466:intron |
| TAGAACCTGTTGAGAGAAAC+TGG | 0.279933 | 4.4:+86040965 | None:intergenic |
| CATCTTCCATCTTTCATAGA+AGG | 0.284381 | 4.4:+86038054 | None:intergenic |
| AAAGTCAACTGAATTTAAAT+TGG | 0.286326 | 4.4:+86037477 | None:intergenic |
| GATATGATCTGGAACCATTC+AGG | 0.296869 | 4.4:-86037958 | MS.gene33466:CDS |
| GAAACTCTTGGATGGGAATA+AGG | 0.299659 | 4.4:-86037292 | MS.gene33466:CDS |
| TATATCCATACCTGCAAATC+AGG | 0.305254 | 4.4:+86044156 | None:intergenic |
| CTGTAAGTATTAAACTCATT+TGG | 0.310885 | 4.4:+86034440 | None:intergenic |
| GTACAATGCATCAATATAAT+CGG | 0.312682 | 4.4:+86044305 | None:intergenic |
| CTGTTATCAAACACTTAGAT+TGG | 0.314711 | 4.4:-86042524 | MS.gene33466:CDS |
| AGAACACTCGATGATCTTTC+CGG | 0.326134 | 4.4:+86034520 | None:intergenic |
| TTCAATGACTGCATCTTTCC+TGG | 0.327539 | 4.4:-86045423 | MS.gene33466:CDS |
| ATACCTTATATATGATCTTA+TGG | 0.335734 | 4.4:-86038385 | MS.gene33466:CDS |
| TCCAAATGAGGTTTCCTTGC+AGG | 0.339727 | 4.4:-86039823 | MS.gene33466:CDS |
| GACCCACCATTTCACATTGC+TGG | 0.345896 | 4.4:-86038460 | MS.gene33466:CDS |
| TTCAGTTGACTTTCTGTTTG+AGG | 0.348533 | 4.4:-86037467 | MS.gene33466:intron |
| AAACACTTAGATTGGGTGTT+GGG | 0.348829 | 4.4:-86042516 | MS.gene33466:CDS |
| CACACCCAGTTTCTCTCAAC+AGG | 0.355691 | 4.4:-86040970 | MS.gene33466:intron |
| AGTCCCAGGCCCTGATTTGC+AGG | 0.355862 | 4.4:-86044166 | MS.gene33466:intron |
| AGAGGGTATCAAGCATCTTA+AGG | 0.368989 | 4.4:-86044986 | MS.gene33466:intron |
| TCTTGATTTGCAGCTTGGTC+TGG | 0.383493 | 4.4:-86045061 | MS.gene33466:intron |
| TTGCCATAAGATCATATATA+AGG | 0.384966 | 4.4:+86038382 | None:intergenic |
| GAAAGATCATCGAGTGTTCT+TGG | 0.397309 | 4.4:-86034517 | MS.gene33466:CDS |
| TAATCGGGTTTATAGATTCC+TGG | 0.398054 | 4.4:+86044321 | None:intergenic |
| ACATAGCACGCATTAGATAA+TGG | 0.401286 | 4.4:+86044499 | None:intergenic |
| CAACCATGTTTCAGTAATAG+AGG | 0.418216 | 4.4:-86038358 | MS.gene33466:intron |
| TTCGCAGGAATATCCATTCC+AGG | 0.421148 | 4.4:+86034483 | None:intergenic |
| TCCTGCAAGGAAACCTCATT+TGG | 0.422217 | 4.4:+86039822 | None:intergenic |
| TCACCAAGAGGAACCTTAGA+AGG | 0.423450 | 4.4:+86045450 | None:intergenic |
| GAATCACCTTCGCTGCTTTG+CGG | 0.427455 | 4.4:+86034206 | None:intergenic |
| AGAGGACATACACAATTTCC+AGG | 0.428565 | 4.4:-86040995 | MS.gene33466:CDS |
| TGTAGTAAGGATTTCTGCTC+TGG | 0.435361 | 4.4:+86037981 | None:intergenic |
| TGCTTCCATCGGCAGGTTGA+AGG | 0.440873 | 4.4:-86037354 | MS.gene33466:intron |
| CACCATCCAGCAATGTGAAA+TGG | 0.442513 | 4.4:+86038454 | None:intergenic |
| TACAATGCATCAATATAATC+GGG | 0.448524 | 4.4:+86044306 | None:intergenic |
| AAAGATCATCGAGTGTTCTT+GGG | 0.450552 | 4.4:-86034516 | MS.gene33466:CDS |
| TGTTATCAAACACTTAGATT+GGG | 0.458416 | 4.4:-86042523 | MS.gene33466:CDS |
| TATGTCAATGTCTGTTACTC+AGG | 0.458504 | 4.4:-86044481 | MS.gene33466:intron |
| TGATGCACGGGTCTATCATC+TGG | 0.459875 | 4.4:+86049574 | None:intergenic |
| TGATGTCGTTCGTGATTCCT+AGG | 0.470600 | 4.4:+86038010 | None:intergenic |
| CAGCAAATCTCCTGGCCTGA+TGG | 0.473077 | 4.4:+86045480 | None:intergenic |
| TCCAGATCATATCTGTAGTA+AGG | 0.475878 | 4.4:+86037968 | None:intergenic |
| TCATGAGTACGTGGTACATA+AGG | 0.478867 | 4.4:+86037523 | None:intergenic |
| TGATACAAGTAGGCTTCCTC+CGG | 0.479076 | 4.4:-86049494 | MS.gene33466:CDS |
| TGTAAATCAGTTCGTCTATG+AGG | 0.480532 | 4.4:-86044812 | MS.gene33466:intron |
| GAGGATGATGATGGAGTCCC+AGG | 0.483153 | 4.4:-86044180 | MS.gene33466:CDS |
| TGGTTAGATTGCCCTCCATC+AGG | 0.483908 | 4.4:-86045495 | MS.gene33466:CDS |
| CATACCTGCAAATCAGGGCC+TGG | 0.484563 | 4.4:+86044162 | None:intergenic |
| TGGAAATTGTGTATGTCCTC+TGG | 0.487711 | 4.4:+86040997 | None:intergenic |
| GGGAATAAGGTTGCTTTCAA+AGG | 0.488951 | 4.4:-86037279 | MS.gene33466:intron |
| ATTTATCTGTTCTAATTCGC+AGG | 0.489727 | 4.4:+86034468 | None:intergenic |
| ATACCTTCTAAGGTTCCTCT+TGG | 0.491347 | 4.4:-86045453 | MS.gene33466:CDS |
| TCCTTACTACAGATATGATC+TGG | 0.492566 | 4.4:-86037969 | MS.gene33466:CDS |
| AGAGAAACTGGGTGTGAACC+TGG | 0.494965 | 4.4:+86040977 | None:intergenic |
| ATCGGCAGGTTGAAGGTGAT+CGG | 0.499299 | 4.4:-86037347 | MS.gene33466:intron |
| GGAGGACAAACTACCATCTC+AGG | 0.503101 | 4.4:+86044261 | None:intergenic |
| GATCTTTCCGGAATAAAATG+AGG | 0.503180 | 4.4:+86034532 | None:intergenic |
| ACTCCATCATCATCCTCGTC+AGG | 0.505855 | 4.4:+86044186 | None:intergenic |
| TCGGCAGGTTGAAGGTGATC+GGG | 0.508639 | 4.4:-86037346 | MS.gene33466:intron |
| TCATCTGTGAGCTTGTCTCA+TGG | 0.508881 | 4.4:+86042608 | None:intergenic |
| GGTAGTTTGTCCTCCTACTC+CGG | 0.511592 | 4.4:-86044253 | MS.gene33466:CDS |
| TACACATGGGCATAATCGTA+CGG | 0.511801 | 4.4:-86044535 | MS.gene33466:CDS |
| ATATGATCTGGAACCATTCA+GGG | 0.513320 | 4.4:-86037957 | MS.gene33466:intron |
| ATACCTGCAAATCAGGGCCT+GGG | 0.513462 | 4.4:+86044163 | None:intergenic |
| TCTTCTGAACTTGATCTCAA+TGG | 0.513742 | 4.4:-86044219 | MS.gene33466:CDS |
| TTCAAGATGCATGCCCTGAA+TGG | 0.520586 | 4.4:+86037944 | None:intergenic |
| ATCTTCCATCTTTCATAGAA+GGG | 0.521972 | 4.4:+86038055 | None:intergenic |
| CTCATGAAGGACTCTTAAAG+TGG | 0.522723 | 4.4:-86037507 | MS.gene33466:CDS |
| ATGATGTTAATAACAATGGA+TGG | 0.526023 | 4.4:-86039884 | MS.gene33466:CDS |
| CTCATGCCGCAAAGCAGCGA+AGG | 0.526270 | 4.4:-86034212 | MS.gene33466:CDS |
| TGAGTTTAATACTTACAGAA+AGG | 0.527213 | 4.4:-86034435 | MS.gene33466:intron |
| GCCTTCCCATGTATGCGGAC+AGG | 0.528594 | 4.4:-86034266 | MS.gene33466:CDS |
| ACGGGGAAAGAAGAAACTCT+TGG | 0.528706 | 4.4:-86037304 | MS.gene33466:CDS |
| CAAACACTTAGATTGGGTGT+TGG | 0.529106 | 4.4:-86042517 | MS.gene33466:CDS |
| CACATTGCTGGATGGTGAGA+TGG | 0.531583 | 4.4:-86038448 | MS.gene33466:CDS |
| CTTGCCAGATTCAAATAAGC+AGG | 0.531786 | 4.4:-86038415 | MS.gene33466:CDS |
| GTTCCTGACGAGGATGATGA+TGG | 0.533773 | 4.4:-86044189 | MS.gene33466:CDS |
| CAAATCTCCTGGCCTGATGG+AGG | 0.537610 | 4.4:+86045483 | None:intergenic |
| CACCATTTCACATTGCTGGA+TGG | 0.538269 | 4.4:-86038456 | MS.gene33466:CDS |
| ATTGTCGAAGGGTCCAAATG+AGG | 0.544433 | 4.4:-86039835 | MS.gene33466:CDS |
| GGAAAGAAGAAACTCTTGGA+TGG | 0.547625 | 4.4:-86037300 | MS.gene33466:CDS |
| CTGCTTATTTGAATCTGGCA+AGG | 0.557177 | 4.4:+86038416 | None:intergenic |
| TCCTGTCCGCATACATGGGA+AGG | 0.564771 | 4.4:+86034265 | None:intergenic |
| AGATTGCCCTCCATCAGGCC+AGG | 0.564806 | 4.4:-86045490 | MS.gene33466:CDS |
| CATCCAGCAATGTGAAATGG+TGG | 0.570886 | 4.4:+86038457 | None:intergenic |
| CTAAATCATATGATACAAGT+AGG | 0.572044 | 4.4:-86049504 | MS.gene33466:CDS |
| AACACTTAGATTGGGTGTTG+GGG | 0.573445 | 4.4:-86042515 | MS.gene33466:intron |
| AGCGACCCTTCTATGAAAGA+TGG | 0.580254 | 4.4:-86038060 | MS.gene33466:CDS |
| TTGCAGGAGTACTACTAATG+AGG | 0.583101 | 4.4:-86039807 | MS.gene33466:intron |
| GTATCATACAGCAAATCTCC+TGG | 0.583699 | 4.4:+86045472 | None:intergenic |
| TTGTTCAGATTCAATGCAGG+GGG | 0.583802 | 4.4:-86044861 | MS.gene33466:intron |
| TATGTACCACGTACTCATGA+AGG | 0.583824 | 4.4:-86037520 | MS.gene33466:CDS |
| TTATTATTATGCAACATGGA+AGG | 0.585034 | 4.4:-86039924 | MS.gene33466:CDS |
| AAATCTCCTGGCCTGATGGA+GGG | 0.585045 | 4.4:+86045484 | None:intergenic |
| CATCATATACCGTGTACCAT+CGG | 0.585178 | 4.4:+86039901 | None:intergenic |
| GATTCCTGGAGGGCGTGCAT+CGG | 0.585482 | 4.4:+86044335 | None:intergenic |
| GTATATGATGTTAATAACAA+TGG | 0.587170 | 4.4:-86039888 | MS.gene33466:CDS |
| CATGGAAGGCCGATGGTACA+CGG | 0.588207 | 4.4:-86039910 | MS.gene33466:CDS |
| ACACATGGGCATAATCGTAC+GGG | 0.596017 | 4.4:-86044534 | MS.gene33466:CDS |
| ATACTTGTTCATTGTACACA+TGG | 0.598629 | 4.4:-86044549 | MS.gene33466:CDS |
| AGAAAGAAGTGATTGAACCT+AGG | 0.602136 | 4.4:-86038027 | MS.gene33466:CDS |
| GAAAGAAGAAACTCTTGGAT+GGG | 0.603849 | 4.4:-86037299 | MS.gene33466:CDS |
| ATCTTTCCGGAATAAAATGA+GGG | 0.606895 | 4.4:+86034533 | None:intergenic |
| AAACTCTCACATGAGGCAGA+TGG | 0.608691 | 4.4:-86037780 | MS.gene33466:CDS |
| TTTATCCTGTCCGCATACAT+GGG | 0.615995 | 4.4:+86034261 | None:intergenic |
| AACGTTATTATTATGCAACA+TGG | 0.617616 | 4.4:-86039928 | MS.gene33466:CDS |
| TACTTGTTCATTGTACACAT+GGG | 0.617647 | 4.4:-86044548 | MS.gene33466:CDS |
| GATACAAGTAGGCTTCCTCC+GGG | 0.618003 | 4.4:-86049493 | MS.gene33466:intron |
| ATATCCATACCTGCAAATCA+GGG | 0.619101 | 4.4:+86044157 | None:intergenic |
| ACCACTAGTGTGCAGGCCAG+AGG | 0.620774 | 4.4:-86041013 | MS.gene33466:intron |
| CGGGTTTATAGATTCCTGGA+GGG | 0.626209 | 4.4:+86044325 | None:intergenic |
| GGTGACTGTGAATGATGCAC+GGG | 0.626615 | 4.4:+86049562 | None:intergenic |
| ATCCAGCAATGTGAAATGGT+GGG | 0.633078 | 4.4:+86038458 | None:intergenic |
| TGATGTTAATAACAATGGAT+GGG | 0.637271 | 4.4:-86039883 | MS.gene33466:CDS |
| TGGTGAAGCAGTTCCTGACG+AGG | 0.650559 | 4.4:-86044199 | MS.gene33466:CDS |
| TCATTGAATGATTCACCAAG+AGG | 0.656337 | 4.4:+86045438 | None:intergenic |
| AGGTGACTGTGAATGATGCA+CGG | 0.658854 | 4.4:+86049561 | None:intergenic |
| GAACCTCTATTACTGAAACA+TGG | 0.658855 | 4.4:+86038355 | None:intergenic |
| TCATTAGTAGTACTCCTGCA+AGG | 0.662132 | 4.4:+86039809 | None:intergenic |
| TATGCAACATGGAAGGCCGA+TGG | 0.664710 | 4.4:-86039917 | MS.gene33466:CDS |
| TTTGTCCTCCTACTCCGGAG+TGG | 0.668870 | 4.4:-86044248 | MS.gene33466:CDS |
| AATTCGCCTTCCCATGTATG+CGG | 0.681083 | 4.4:-86034271 | MS.gene33466:CDS |
| TTTGTTCAGATTCAATGCAG+GGG | 0.682706 | 4.4:-86044862 | MS.gene33466:intron |
| TCGGGTTTATAGATTCCTGG+AGG | 0.683414 | 4.4:+86044324 | None:intergenic |
| AGAACCTGTTGAGAGAAACT+GGG | 0.685395 | 4.4:+86040966 | None:intergenic |
| TATAGTTGTTGATCATATCG+AGG | 0.691004 | 4.4:+86049541 | None:intergenic |
| AAGAGTCCTTCATGAGTACG+TGG | 0.699809 | 4.4:+86037514 | None:intergenic |
| TGTCACTGGATAGTATCGAG+AGG | 0.717845 | 4.4:+86045020 | None:intergenic |
| CATAAAAGACAACATCACAG+AGG | 0.751598 | 4.4:-86034322 | MS.gene33466:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 86034209 | 86049635 | 86034209 | ID=MS.gene33466 |
| chr4.4 | mRNA | 86034209 | 86049635 | 86034209 | ID=MS.gene33466.t1;Parent=MS.gene33466 |
| chr4.4 | exon | 86049494 | 86049635 | 86049494 | ID=MS.gene33466.t1.exon1;Parent=MS.gene33466.t1 |
| chr4.4 | CDS | 86049494 | 86049635 | 86049494 | ID=cds.MS.gene33466.t1;Parent=MS.gene33466.t1 |
| chr4.4 | exon | 86045368 | 86045519 | 86045368 | ID=MS.gene33466.t1.exon2;Parent=MS.gene33466.t1 |
| chr4.4 | CDS | 86045368 | 86045519 | 86045368 | ID=cds.MS.gene33466.t1;Parent=MS.gene33466.t1 |
| chr4.4 | exon | 86044987 | 86045070 | 86044987 | ID=MS.gene33466.t1.exon3;Parent=MS.gene33466.t1 |
| chr4.4 | CDS | 86044987 | 86045070 | 86044987 | ID=cds.MS.gene33466.t1;Parent=MS.gene33466.t1 |
| chr4.4 | exon | 86044813 | 86044875 | 86044813 | ID=MS.gene33466.t1.exon4;Parent=MS.gene33466.t1 |
| chr4.4 | CDS | 86044813 | 86044875 | 86044813 | ID=cds.MS.gene33466.t1;Parent=MS.gene33466.t1 |
| chr4.4 | exon | 86044482 | 86044613 | 86044482 | ID=MS.gene33466.t1.exon5;Parent=MS.gene33466.t1 |
| chr4.4 | CDS | 86044482 | 86044613 | 86044482 | ID=cds.MS.gene33466.t1;Parent=MS.gene33466.t1 |
| chr4.4 | exon | 86044167 | 86044373 | 86044167 | ID=MS.gene33466.t1.exon6;Parent=MS.gene33466.t1 |
| chr4.4 | CDS | 86044167 | 86044373 | 86044167 | ID=cds.MS.gene33466.t1;Parent=MS.gene33466.t1 |
| chr4.4 | exon | 86042516 | 86042635 | 86042516 | ID=MS.gene33466.t1.exon7;Parent=MS.gene33466.t1 |
| chr4.4 | CDS | 86042516 | 86042635 | 86042516 | ID=cds.MS.gene33466.t1;Parent=MS.gene33466.t1 |
| chr4.4 | exon | 86040971 | 86041020 | 86040971 | ID=MS.gene33466.t1.exon8;Parent=MS.gene33466.t1 |
| chr4.4 | CDS | 86040971 | 86041020 | 86040971 | ID=cds.MS.gene33466.t1;Parent=MS.gene33466.t1 |
| chr4.4 | exon | 86039808 | 86039973 | 86039808 | ID=MS.gene33466.t1.exon9;Parent=MS.gene33466.t1 |
| chr4.4 | CDS | 86039808 | 86039973 | 86039808 | ID=cds.MS.gene33466.t1;Parent=MS.gene33466.t1 |
| chr4.4 | exon | 86038359 | 86038496 | 86038359 | ID=MS.gene33466.t1.exon10;Parent=MS.gene33466.t1 |
| chr4.4 | CDS | 86038359 | 86038496 | 86038359 | ID=cds.MS.gene33466.t1;Parent=MS.gene33466.t1 |
| chr4.4 | exon | 86037958 | 86038080 | 86037958 | ID=MS.gene33466.t1.exon11;Parent=MS.gene33466.t1 |
| chr4.4 | CDS | 86037958 | 86038080 | 86037958 | ID=cds.MS.gene33466.t1;Parent=MS.gene33466.t1 |
| chr4.4 | exon | 86037767 | 86037865 | 86037767 | ID=MS.gene33466.t1.exon12;Parent=MS.gene33466.t1 |
| chr4.4 | CDS | 86037767 | 86037865 | 86037767 | ID=cds.MS.gene33466.t1;Parent=MS.gene33466.t1 |
| chr4.4 | exon | 86037468 | 86037557 | 86037468 | ID=MS.gene33466.t1.exon13;Parent=MS.gene33466.t1 |
| chr4.4 | CDS | 86037468 | 86037557 | 86037468 | ID=cds.MS.gene33466.t1;Parent=MS.gene33466.t1 |
| chr4.4 | exon | 86037280 | 86037361 | 86037280 | ID=MS.gene33466.t1.exon14;Parent=MS.gene33466.t1 |
| chr4.4 | CDS | 86037280 | 86037361 | 86037280 | ID=cds.MS.gene33466.t1;Parent=MS.gene33466.t1 |
| chr4.4 | exon | 86034436 | 86034566 | 86034436 | ID=MS.gene33466.t1.exon15;Parent=MS.gene33466.t1 |
| chr4.4 | CDS | 86034436 | 86034566 | 86034436 | ID=cds.MS.gene33466.t1;Parent=MS.gene33466.t1 |
| chr4.4 | exon | 86034209 | 86034355 | 86034209 | ID=MS.gene33466.t1.exon16;Parent=MS.gene33466.t1 |
| chr4.4 | CDS | 86034209 | 86034355 | 86034209 | ID=cds.MS.gene33466.t1;Parent=MS.gene33466.t1 |
| Gene Sequence |
| Protein sequence |
