Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67346.t1 | XP_024625892.1 | 97.1 | 690 | 20 | 0 | 1 | 690 | 1 | 690 | 0.00E+00 | 1308.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67346.t1 | O60942 | 35.3 | 592 | 329 | 17 | 96 | 665 | 4 | 563 | 1.4e-77 | 292.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67346.t1 | A0A072U100 | 97.1 | 690 | 20 | 0 | 1 | 690 | 1 | 690 | 0.0e+00 | 1308.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene67346 | 0.855161 | 7.60E-62 | -1.69E-46 |
| MS.gene049254 | MS.gene67346 | 0.800232 | 1.59E-48 | -1.69E-46 |
| MS.gene049343 | MS.gene67346 | 0.811924 | 5.49E-51 | -1.69E-46 |
| MS.gene049419 | MS.gene67346 | -0.809056 | 2.28E-50 | -1.69E-46 |
| MS.gene049424 | MS.gene67346 | 0.806986 | 6.30E-50 | -1.69E-46 |
| MS.gene049653 | MS.gene67346 | 0.805236 | 1.47E-49 | -1.69E-46 |
| MS.gene049850 | MS.gene67346 | 0.807508 | 4.88E-50 | -1.69E-46 |
| MS.gene050105 | MS.gene67346 | 0.815066 | 1.12E-51 | -1.69E-46 |
| MS.gene050119 | MS.gene67346 | 0.808705 | 2.72E-50 | -1.69E-46 |
| MS.gene050355 | MS.gene67346 | 0.802739 | 4.86E-49 | -1.69E-46 |
| MS.gene050442 | MS.gene67346 | 0.809515 | 1.82E-50 | -1.69E-46 |
| MS.gene050605 | MS.gene67346 | 0.825826 | 3.79E-54 | -1.69E-46 |
| MS.gene050680 | MS.gene67346 | 0.801275 | 9.72E-49 | -1.69E-46 |
| MS.gene050689 | MS.gene67346 | 0.826977 | 2.02E-54 | -1.69E-46 |
| MS.gene050759 | MS.gene67346 | 0.806906 | 6.55E-50 | -1.69E-46 |
| MS.gene050905 | MS.gene67346 | -0.813211 | 2.87E-51 | -1.69E-46 |
| MS.gene050962 | MS.gene67346 | 0.800006 | 1.76E-48 | -1.69E-46 |
| MS.gene051198 | MS.gene67346 | 0.802518 | 5.40E-49 | -1.69E-46 |
| MS.gene051241 | MS.gene67346 | 0.801628 | 8.23E-49 | -1.69E-46 |
| MS.gene051243 | MS.gene67346 | 0.803626 | 3.19E-49 | -1.69E-46 |
| MS.gene05134 | MS.gene67346 | 0.801843 | 7.44E-49 | -1.69E-46 |
| MS.gene051363 | MS.gene67346 | 0.82291 | 1.84E-53 | -1.69E-46 |
| MS.gene051365 | MS.gene67346 | 0.818653 | 1.75E-52 | -1.69E-46 |
| MS.gene051368 | MS.gene67346 | 0.817069 | 3.99E-52 | -1.69E-46 |
| MS.gene051744 | MS.gene67346 | 0.803712 | 3.06E-49 | -1.69E-46 |
| MS.gene051975 | MS.gene67346 | 0.800212 | 1.60E-48 | -1.69E-46 |
| MS.gene052012 | MS.gene67346 | 0.813898 | 2.03E-51 | -1.69E-46 |
| MS.gene052108 | MS.gene67346 | 0.801515 | 8.68E-49 | -1.69E-46 |
| MS.gene052286 | MS.gene67346 | 0.802777 | 4.78E-49 | -1.69E-46 |
| MS.gene052426 | MS.gene67346 | 0.809214 | 2.11E-50 | -1.69E-46 |
| MS.gene052519 | MS.gene67346 | 0.824139 | 9.49E-54 | -1.69E-46 |
| MS.gene052611 | MS.gene67346 | 0.809992 | 1.44E-50 | -1.69E-46 |
| MS.gene052773 | MS.gene67346 | 0.80093 | 1.14E-48 | -1.69E-46 |
| MS.gene052863 | MS.gene67346 | 0.833413 | 5.41E-56 | -1.69E-46 |
| MS.gene052954 | MS.gene67346 | 0.826524 | 2.59E-54 | -1.69E-46 |
| MS.gene053006 | MS.gene67346 | 0.849345 | 3.43E-60 | -1.69E-46 |
| MS.gene053008 | MS.gene67346 | 0.858031 | 1.09E-62 | -1.69E-46 |
| MS.gene053080 | MS.gene67346 | 0.814221 | 1.72E-51 | -1.69E-46 |
| MS.gene053166 | MS.gene67346 | 0.807177 | 5.74E-50 | -1.69E-46 |
| MS.gene053226 | MS.gene67346 | 0.842559 | 2.40E-58 | -1.69E-46 |
| MS.gene05350 | MS.gene67346 | 0.802862 | 4.59E-49 | -1.69E-46 |
| MS.gene05364 | MS.gene67346 | 0.816891 | 4.38E-52 | -1.69E-46 |
| MS.gene053931 | MS.gene67346 | 0.832058 | 1.17E-55 | -1.69E-46 |
| MS.gene053962 | MS.gene67346 | 0.802867 | 4.58E-49 | -1.69E-46 |
| MS.gene05414 | MS.gene67346 | 0.80167 | 8.07E-49 | -1.69E-46 |
| MS.gene05415 | MS.gene67346 | 0.818105 | 2.33E-52 | -1.69E-46 |
| MS.gene054236 | MS.gene67346 | 0.800822 | 1.20E-48 | -1.69E-46 |
| MS.gene054479 | MS.gene67346 | 0.821584 | 3.74E-53 | -1.69E-46 |
| MS.gene054651 | MS.gene67346 | 0.836043 | 1.18E-56 | -1.69E-46 |
| MS.gene054657 | MS.gene67346 | 0.845264 | 4.53E-59 | -1.69E-46 |
| MS.gene054658 | MS.gene67346 | 0.804706 | 1.90E-49 | -1.69E-46 |
| MS.gene054994 | MS.gene67346 | 0.913438 | 6.15E-84 | -1.69E-46 |
| MS.gene05510 | MS.gene67346 | 0.825957 | 3.53E-54 | -1.69E-46 |
| MS.gene05517 | MS.gene67346 | 0.831869 | 1.31E-55 | -1.69E-46 |
| MS.gene055222 | MS.gene67346 | 0.840247 | 9.75E-58 | -1.69E-46 |
| MS.gene055230 | MS.gene67346 | 0.822611 | 2.16E-53 | -1.69E-46 |
| MS.gene055512 | MS.gene67346 | 0.831613 | 1.51E-55 | -1.69E-46 |
| MS.gene055623 | MS.gene67346 | 0.820258 | 7.54E-53 | -1.69E-46 |
| MS.gene055701 | MS.gene67346 | 0.805532 | 1.28E-49 | -1.69E-46 |
| MS.gene055818 | MS.gene67346 | 0.849341 | 3.44E-60 | -1.69E-46 |
| MS.gene055841 | MS.gene67346 | 0.818836 | 1.59E-52 | -1.69E-46 |
| MS.gene056174 | MS.gene67346 | 0.804117 | 2.52E-49 | -1.69E-46 |
| MS.gene056506 | MS.gene67346 | 0.804173 | 2.45E-49 | -1.69E-46 |
| MS.gene05686 | MS.gene67346 | 0.810347 | 1.21E-50 | -1.69E-46 |
| MS.gene057060 | MS.gene67346 | 0.818665 | 1.74E-52 | -1.69E-46 |
| MS.gene057208 | MS.gene67346 | 0.875337 | 3.34E-68 | -1.69E-46 |
| MS.gene057392 | MS.gene67346 | 0.833053 | 6.65E-56 | -1.69E-46 |
| MS.gene057693 | MS.gene67346 | 0.849224 | 3.71E-60 | -1.69E-46 |
| MS.gene057855 | MS.gene67346 | 0.835108 | 2.03E-56 | -1.69E-46 |
| MS.gene057869 | MS.gene67346 | 0.815923 | 7.21E-52 | -1.69E-46 |
| MS.gene057915 | MS.gene67346 | 0.85563 | 5.55E-62 | -1.69E-46 |
| MS.gene058008 | MS.gene67346 | 0.807615 | 4.63E-50 | -1.69E-46 |
| MS.gene058009 | MS.gene67346 | 0.819764 | 9.78E-53 | -1.69E-46 |
| MS.gene058010 | MS.gene67346 | 0.800773 | 1.23E-48 | -1.69E-46 |
| MS.gene058126 | MS.gene67346 | 0.810322 | 1.22E-50 | -1.69E-46 |
| MS.gene058399 | MS.gene67346 | 0.805102 | 1.57E-49 | -1.69E-46 |
| MS.gene058548 | MS.gene67346 | 0.835647 | 1.49E-56 | -1.69E-46 |
| MS.gene058549 | MS.gene67346 | 0.812145 | 4.91E-51 | -1.69E-46 |
| MS.gene058595 | MS.gene67346 | 0.824089 | 9.75E-54 | -1.69E-46 |
| MS.gene058625 | MS.gene67346 | 0.826012 | 3.43E-54 | -1.69E-46 |
| MS.gene058783 | MS.gene67346 | 0.847189 | 1.35E-59 | -1.69E-46 |
| MS.gene058979 | MS.gene67346 | 0.843204 | 1.62E-58 | -1.69E-46 |
| MS.gene059161 | MS.gene67346 | 0.818403 | 2.00E-52 | -1.69E-46 |
| MS.gene059317 | MS.gene67346 | 0.806351 | 8.58E-50 | -1.69E-46 |
| MS.gene05978 | MS.gene67346 | 0.816049 | 6.76E-52 | -1.69E-46 |
| MS.gene05979 | MS.gene67346 | 0.838625 | 2.57E-57 | -1.69E-46 |
| MS.gene059842 | MS.gene67346 | 0.85149 | 8.58E-61 | -1.69E-46 |
| MS.gene060011 | MS.gene67346 | 0.804326 | 2.28E-49 | -1.69E-46 |
| MS.gene060244 | MS.gene67346 | 0.800123 | 1.67E-48 | -1.69E-46 |
| MS.gene060310 | MS.gene67346 | 0.811849 | 5.70E-51 | -1.69E-46 |
| MS.gene060322 | MS.gene67346 | 0.823009 | 1.74E-53 | -1.69E-46 |
| MS.gene060683 | MS.gene67346 | 0.833786 | 4.37E-56 | -1.69E-46 |
| MS.gene060685 | MS.gene67346 | 0.832823 | 7.58E-56 | -1.69E-46 |
| MS.gene060803 | MS.gene67346 | 0.861574 | 9.32E-64 | -1.69E-46 |
| MS.gene060935 | MS.gene67346 | 0.840846 | 6.80E-58 | -1.69E-46 |
| MS.gene060937 | MS.gene67346 | 0.817158 | 3.81E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene93389 | MS.gene67346 | PPI |
| MS.gene67346 | MS.gene052776 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67346.t1 | MTR_7g066810 | 97.681 | 690 | 16 | 0 | 1 | 690 | 1 | 690 | 0.0 | 1397 |
| MS.gene67346.t1 | MTR_4g014920 | 78.757 | 692 | 131 | 6 | 1 | 687 | 1 | 681 | 0.0 | 1073 |
| MS.gene67346.t1 | MTR_4g014920 | 79.070 | 688 | 128 | 6 | 5 | 687 | 1 | 677 | 0.0 | 1069 |
| MS.gene67346.t1 | MTR_4g014920 | 78.067 | 652 | 127 | 6 | 1 | 647 | 1 | 641 | 0.0 | 1010 |
| MS.gene67346.t1 | MTR_4g014920 | 79.210 | 582 | 105 | 6 | 1 | 577 | 1 | 571 | 0.0 | 907 |
| MS.gene67346.t1 | MTR_7g094670 | 62.539 | 646 | 220 | 9 | 53 | 690 | 2 | 633 | 0.0 | 813 |
| MS.gene67346.t1 | MTR_7g068260 | 53.205 | 156 | 23 | 2 | 474 | 629 | 29 | 134 | 1.65e-42 | 150 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67346.t1 | AT3G09100 | 66.475 | 695 | 205 | 9 | 1 | 690 | 1 | 672 | 0.0 | 909 |
| MS.gene67346.t1 | AT5G01290 | 63.623 | 690 | 214 | 11 | 5 | 690 | 1 | 657 | 0.0 | 847 |
| MS.gene67346.t1 | AT5G28210 | 55.887 | 603 | 225 | 16 | 98 | 690 | 48 | 619 | 0.0 | 641 |
| MS.gene67346.t1 | AT3G09100 | 64.226 | 478 | 149 | 5 | 1 | 474 | 1 | 460 | 0.0 | 602 |
Find 146 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACTTCCATCATATGATTTA+AGG | 0.113031 | 7.3:-38086788 | None:intergenic |
| TATATGACATGGAGCCTTTC+AGG | 0.186417 | 7.3:+38092683 | MS.gene67346:CDS |
| CTGCTTTCAGATACTCAAAT+TGG | 0.211849 | 7.3:+38089855 | MS.gene67346:CDS |
| ATGATTTAAGGATCTTATTA+TGG | 0.232235 | 7.3:-38086776 | None:intergenic |
| AATGACAAACGATGATGTTT+TGG | 0.244746 | 7.3:+38089789 | MS.gene67346:CDS |
| TCAGACCCCATGCTTTATTC+TGG | 0.261086 | 7.3:+38094342 | MS.gene67346:CDS |
| ATGGTACCGTTCATGATTCC+TGG | 0.271885 | 7.3:-38092641 | None:intergenic |
| CCACTTTCTATGTGCTCTTC+TGG | 0.283156 | 7.3:-38085796 | None:intergenic |
| TTTCGGCATGATACCTTCTA+AGG | 0.285277 | 7.3:+38087377 | MS.gene67346:CDS |
| CGCAGATGGTCTCATATTTC+AGG | 0.293837 | 7.3:+38092873 | MS.gene67346:CDS |
| CTTGTAAGTATTTAAGTCAT+TGG | 0.300316 | 7.3:-38094442 | None:intergenic |
| GCAGGACAGACTATCGTTTC+AGG | 0.301819 | 7.3:-38088692 | None:intergenic |
| CTTGAATGCCTCTCCTTTGC+CGG | 0.304993 | 7.3:+38085693 | MS.gene67346:CDS |
| CCGCCATCAGATCATATATT+AGG | 0.327193 | 7.3:-38091727 | None:intergenic |
| TTGGACCTGTCTAACGAAAC+TGG | 0.330111 | 7.3:-38090839 | None:intergenic |
| ATATATGATGCTAATAACTA+TGG | 0.345799 | 7.3:+38091431 | MS.gene67346:CDS |
| TACTCAGGTTTATAGATTCC+TGG | 0.355706 | 7.3:-38088632 | None:intergenic |
| CACCACTTCACATTACTTGA+TGG | 0.363178 | 7.3:+38091653 | MS.gene67346:CDS |
| TCATCATCGTCATCATTATC+TGG | 0.364129 | 7.3:-38088770 | None:intergenic |
| TCTTTCTTTAGATCTGATAC+TGG | 0.364157 | 7.3:-38087763 | None:intergenic |
| TGCTTTCAGATACTCAAATT+GGG | 0.364970 | 7.3:+38089856 | MS.gene67346:CDS |
| ACTTGCACGGGCCTGTCATC+TGG | 0.368081 | 7.3:-38086723 | None:intergenic |
| TGGTTGGATTGCCCTTCATC+TGG | 0.368525 | 7.3:+38087345 | MS.gene67346:CDS |
| TCTTATCCTGTCGGCATACA+TGG | 0.371242 | 7.3:-38094627 | None:intergenic |
| CGTTGGCTTGCAGCTTGGTC+TGG | 0.378002 | 7.3:+38087708 | MS.gene67346:intron |
| CCATTGAGATCAACAAGTTC+GGG | 0.379557 | 7.3:-38088737 | None:intergenic |
| TCACCCAATGGAACCTTAGA+AGG | 0.388575 | 7.3:-38087390 | None:intergenic |
| TGGAAATTGCATGTGTCCTC+TGG | 0.394540 | 7.3:-38090807 | None:intergenic |
| AATGCATCTTGCTGATCATT+AGG | 0.395304 | 7.3:-38089823 | None:intergenic |
| ATGATCAGCAAGATGCATTT+CGG | 0.401431 | 7.3:+38089827 | MS.gene67346:CDS |
| ACCATTGAGATCAACAAGTT+CGG | 0.403010 | 7.3:-38088738 | None:intergenic |
| GTGTGTAATGACGATTTCTA+TGG | 0.403386 | 7.3:+38085669 | None:intergenic |
| TCTCGTTTATTTCAGTCAAC+AGG | 0.403952 | 7.3:-38094592 | None:intergenic |
| AGAGGACACATGCAATTTCC+AGG | 0.406784 | 7.3:+38090809 | MS.gene67346:CDS |
| TTGTAAGTATTTAAGTCATT+GGG | 0.424252 | 7.3:-38094441 | None:intergenic |
| CTGAGCCGCGGCCCTTGCAT+TGG | 0.430652 | 7.3:-38087923 | None:intergenic |
| CTCTTCCACTCCGGAGTAGC+AGG | 0.432247 | 7.3:-38088710 | None:intergenic |
| CTGCTACTCCGGAGTGGAAG+AGG | 0.435765 | 7.3:+38088711 | MS.gene67346:CDS |
| GAAAGATCATCGAGTGTGCT+TGG | 0.437704 | 7.3:+38094364 | MS.gene67346:CDS |
| TTCAAATGAGGTTTCCATGC+AGG | 0.443363 | 7.3:+38091496 | MS.gene67346:CDS |
| AGAGGGTATCAAGCATGTTA+AGG | 0.443861 | 7.3:+38087783 | MS.gene67346:CDS |
| GGGTTCATTGTTGCATTTGA+AGG | 0.445023 | 7.3:+38093605 | MS.gene67346:CDS |
| TCATTATTGTGTCAATCTCA+TGG | 0.446224 | 7.3:-38089771 | None:intergenic |
| GTATCATGCCGAAAATTTCC+TGG | 0.453234 | 7.3:-38087368 | None:intergenic |
| AATGTCAATGTCTGTTACTC+AGG | 0.460206 | 7.3:+38088492 | MS.gene67346:CDS |
| CCAGAAGAGCACATAGAAAG+TGG | 0.461582 | 7.3:+38085796 | MS.gene67346:CDS |
| GATACCTTCTAAGGTTCCAT+TGG | 0.465384 | 7.3:+38087386 | MS.gene67346:CDS |
| AAAATTTCCTGGCCAGATGA+AGG | 0.471143 | 7.3:-38087357 | None:intergenic |
| GATAGTCTGTCCTGCTACTC+CGG | 0.471499 | 7.3:+38088700 | MS.gene67346:CDS |
| TCTTCGACCTGGCCCTCAAA+AGG | 0.473582 | 7.3:-38085730 | None:intergenic |
| GGATTGCCCTTCATCTGGCC+AGG | 0.473609 | 7.3:+38087350 | MS.gene67346:CDS |
| TCCATGTCATATATATAGTA+AGG | 0.476655 | 7.3:-38092673 | None:intergenic |
| TGATTGACAGATGAATTATC+AGG | 0.486142 | 7.3:-38087948 | None:intergenic |
| ACCACTTCACATTACTTGAT+GGG | 0.490316 | 7.3:+38091654 | MS.gene67346:CDS |
| CTCATGAAGGTCTCTTAAAG+TGG | 0.491856 | 7.3:+38093364 | MS.gene67346:CDS |
| CCCGAACTTGTTGATCTCAA+TGG | 0.492780 | 7.3:+38088737 | MS.gene67346:CDS |
| ATACCTTCTAAGGTTCCATT+GGG | 0.493016 | 7.3:+38087387 | MS.gene67346:CDS |
| TTATTTACATGCAGGTTGGT+TGG | 0.495751 | 7.3:+38087329 | MS.gene67346:intron |
| CAACTGCGTGTCTGTGATAG+AGG | 0.497145 | 7.3:+38091751 | MS.gene67346:CDS |
| AGTATCAGATCTAAAGAAAG+AGG | 0.498017 | 7.3:+38087765 | MS.gene67346:CDS |
| CACACCCAGTTTCGTTAGAC+AGG | 0.501551 | 7.3:+38090834 | MS.gene67346:CDS |
| TCATGAGTACGAGGTACATA+AGG | 0.503688 | 7.3:-38093348 | None:intergenic |
| TGATGGAAGTAAGCTTCCTC+CGG | 0.506250 | 7.3:+38086800 | MS.gene67346:CDS |
| TCTGCGTCGTGTGAGAGCTT+CGG | 0.511610 | 7.3:-38092856 | None:intergenic |
| AAGATCCTTAAATCATATGA+TGG | 0.512777 | 7.3:+38086783 | MS.gene67346:CDS |
| TGGAGCTGATATAGCTCGCC+GGG | 0.516184 | 7.3:+38085816 | MS.gene67346:CDS |
| AACGAAACTGGGTGTGACCC+TGG | 0.516438 | 7.3:-38090827 | None:intergenic |
| TGGTACCGTTCATGATTCCT+GGG | 0.518111 | 7.3:-38092640 | None:intergenic |
| TATGAAATTCATACTTGCAA+CGG | 0.519874 | 7.3:-38088812 | None:intergenic |
| TCAAATGAGGTTTCCATGCA+GGG | 0.525334 | 7.3:+38091497 | MS.gene67346:CDS |
| ATCTTTCCAGAATAAAGCAT+GGG | 0.532742 | 7.3:-38094348 | None:intergenic |
| ACATCATTTGCAACCCTGCA+TGG | 0.534363 | 7.3:-38091510 | None:intergenic |
| AAAGGATCTTCATCTTCCTC+CGG | 0.535591 | 7.3:-38085712 | None:intergenic |
| GCCTTCCCATGTATGCCGAC+AGG | 0.536050 | 7.3:+38094621 | MS.gene67346:CDS |
| ATATGACATGGAGCCTTTCA+GGG | 0.538294 | 7.3:+38092684 | MS.gene67346:CDS |
| TCGGGAGCCCTCTTCCACTC+CGG | 0.539359 | 7.3:-38088719 | None:intergenic |
| AAAGAGAGCGTCCAGATGAC+AGG | 0.539782 | 7.3:+38086712 | MS.gene67346:CDS |
| AGGTGGCTGTGATACTTGCA+CGG | 0.543666 | 7.3:-38086736 | None:intergenic |
| ATCTTCCACCGCTCACAGAA+AGG | 0.545618 | 7.3:-38092595 | None:intergenic |
| GCTTTCAGATACTCAAATTG+GGG | 0.546530 | 7.3:+38089857 | MS.gene67346:CDS |
| TATAATGAATCAATATACTC+AGG | 0.549904 | 7.3:-38088647 | None:intergenic |
| TCTTCATCTTCCTCCGGCAA+AGG | 0.550629 | 7.3:-38085706 | None:intergenic |
| TCAGAAATGCATACCCTGAA+AGG | 0.550897 | 7.3:-38092697 | None:intergenic |
| GCTATCGATTCTTATCCTGT+CGG | 0.551715 | 7.3:-38094636 | None:intergenic |
| GGTGGCTGTGATACTTGCAC+GGG | 0.553801 | 7.3:-38086735 | None:intergenic |
| TTCAGTCAACAGGACATCCT+CGG | 0.555159 | 7.3:-38094582 | None:intergenic |
| ATACCTAATATATGATCTGA+TGG | 0.556235 | 7.3:+38091724 | MS.gene67346:CDS |
| TAGATCCAATGCAAGGGCCG+CGG | 0.559315 | 7.3:+38087918 | MS.gene67346:intron |
| TGCTACTCCGGAGTGGAAGA+GGG | 0.559470 | 7.3:+38088712 | MS.gene67346:CDS |
| CATACTTGCAACGGAGGACC+TGG | 0.559887 | 7.3:-38088803 | None:intergenic |
| GCAAAGGACATCATGTAGCT+AGG | 0.560997 | 7.3:+38094657 | MS.gene67346:CDS |
| ATCTTCCTCCGGCAAAGGAG+AGG | 0.560999 | 7.3:-38085701 | None:intergenic |
| AAATTTCCTGGCCAGATGAA+GGG | 0.561578 | 7.3:-38087356 | None:intergenic |
| AAAGATCATCGAGTGTGCTT+GGG | 0.561891 | 7.3:+38094365 | MS.gene67346:CDS |
| TCCTGTCGGCATACATGGGA+AGG | 0.564005 | 7.3:-38094622 | None:intergenic |
| AATGATGACGATGATGATGA+TGG | 0.565460 | 7.3:+38088776 | MS.gene67346:CDS |
| TATGCAACATGGAAAGCTGA+TGG | 0.568109 | 7.3:+38091402 | MS.gene67346:CDS |
| AGCAGCGGCCTTTCTGTGAG+CGG | 0.568282 | 7.3:+38092587 | MS.gene67346:intron |
| AAGCTCTCACACGACGCAGA+TGG | 0.569710 | 7.3:+38092859 | MS.gene67346:CDS |
| CCCCATCAAGTAATGTGAAG+TGG | 0.580537 | 7.3:-38091655 | None:intergenic |
| ACACATGGTCACAATCGTAC+AGG | 0.581359 | 7.3:+38088439 | MS.gene67346:CDS |
| TGACTTAAATACTTACAAGA+AGG | 0.583315 | 7.3:+38094446 | MS.gene67346:CDS |
| ATGATGCTAATAACTATGGA+TGG | 0.584416 | 7.3:+38091435 | MS.gene67346:CDS |
| GTGCAAGTATCACAGCCACC+TGG | 0.585488 | 7.3:+38086738 | MS.gene67346:CDS |
| TATGTACCTCGTACTCATGA+AGG | 0.587394 | 7.3:+38093351 | MS.gene67346:CDS |
| TGTGGTTTAGATCCAATGCA+AGG | 0.587594 | 7.3:+38087911 | MS.gene67346:intron |
| AGCGGCCTTTCTGTGAGCGG+TGG | 0.587890 | 7.3:+38092590 | MS.gene67346:intron |
| GATGATGATGATGGAGTACC+AGG | 0.588112 | 7.3:+38088785 | MS.gene67346:CDS |
| CTTATCCTGTCGGCATACAT+GGG | 0.592745 | 7.3:-38094626 | None:intergenic |
| GATGGAAGTAAGCTTCCTCC+GGG | 0.598868 | 7.3:+38086801 | MS.gene67346:CDS |
| AGGTAAAATATCGTCAGTGA+AGG | 0.602869 | 7.3:-38087415 | None:intergenic |
| GTGGAGCTGATATAGCTCGC+CGG | 0.603735 | 7.3:+38085815 | MS.gene67346:CDS |
| GAATGCCTCTCCTTTGCCGG+AGG | 0.607982 | 7.3:+38085696 | MS.gene67346:CDS |
| TCAGTGAAGGATTCACCCAA+TGG | 0.608491 | 7.3:-38087402 | None:intergenic |
| CCACTTCACATTACTTGATG+GGG | 0.609587 | 7.3:+38091655 | MS.gene67346:CDS |
| TTTCTGAATGTGCAGGCCAG+AGG | 0.611157 | 7.3:+38090791 | MS.gene67346:intron |
| TCTGAAATGATTAGGTGAGG+AGG | 0.612439 | 7.3:+38092782 | MS.gene67346:intron |
| TGGACCTGTCTAACGAAACT+GGG | 0.617238 | 7.3:-38090838 | None:intergenic |
| GATCTTTCCAGAATAAAGCA+TGG | 0.617360 | 7.3:-38094349 | None:intergenic |
| GAGCATTATACTCTTCGACC+TGG | 0.622098 | 7.3:-38085741 | None:intergenic |
| GTGGTTTAGATCCAATGCAA+GGG | 0.629105 | 7.3:+38087912 | MS.gene67346:intron |
| ATACTTGTTCATTGTACACA+TGG | 0.630429 | 7.3:+38088424 | MS.gene67346:CDS |
| GAAATTCATACTTGCAACGG+AGG | 0.631537 | 7.3:-38088809 | None:intergenic |
| TCCTTACTATATATATGACA+TGG | 0.631783 | 7.3:+38092672 | MS.gene67346:CDS |
| AGGATAAGAATCGATAGCAA+AGG | 0.635554 | 7.3:+38094641 | MS.gene67346:CDS |
| TATAGTAAGGATGTTTGCGA+TGG | 0.637258 | 7.3:-38092660 | None:intergenic |
| GTATCAGATCTAAAGAAAGA+GGG | 0.640851 | 7.3:+38087766 | MS.gene67346:CDS |
| TGTCAATCACTTTGTGTACG+AGG | 0.643052 | 7.3:+38087962 | MS.gene67346:CDS |
| TCTGTCCTGCTACTCCGGAG+TGG | 0.644223 | 7.3:+38088705 | MS.gene67346:CDS |
| GAGGACACATGCAATTTCCA+GGG | 0.649406 | 7.3:+38090810 | MS.gene67346:CDS |
| AGAAAGAAGTGATTGAACCC+AGG | 0.649900 | 7.3:+38092623 | MS.gene67346:CDS |
| ATGTTGCATAGTAGTAACGC+TGG | 0.651191 | 7.3:-38091389 | None:intergenic |
| AACGTGAAGAAAGAAAGAAA+CGG | 0.652918 | 7.3:+38086685 | MS.gene67346:CDS |
| GCGCAATATACTCTTCGACC+TGG | 0.662702 | 7.3:-38085774 | None:intergenic |
| GGGATGGTGATAGAAATGAA+TGG | 0.664533 | 7.3:+38094385 | MS.gene67346:CDS |
| AGCGTTACTACTATGCAACA+TGG | 0.671428 | 7.3:+38091391 | MS.gene67346:CDS |
| CTTTCAGATACTCAAATTGG+GGG | 0.674339 | 7.3:+38089858 | MS.gene67346:CDS |
| AATTATCAGGTACTGAGCCG+CGG | 0.676080 | 7.3:-38087935 | None:intergenic |
| TGTCGGCATACATGGGAAGG+CGG | 0.676239 | 7.3:-38094619 | None:intergenic |
| ATCATCGAGTGTGCTTGGGA+TGG | 0.677706 | 7.3:+38094369 | MS.gene67346:CDS |
| TTGAACCCAGGAATCATGAA+CGG | 0.698189 | 7.3:+38092635 | MS.gene67346:CDS |
| TCTTTCCAGAATAAAGCATG+GGG | 0.710208 | 7.3:-38094347 | None:intergenic |
| CCTAATATATGATCTGATGG+CGG | 0.716701 | 7.3:+38091727 | MS.gene67346:CDS |
| AAGAGACCTTCATGAGTACG+AGG | 0.716715 | 7.3:-38093357 | None:intergenic |
| TCAGGTTTATAGATTCCTGG+AGG | 0.718001 | 7.3:-38088629 | None:intergenic |
| CATAAAAGACAATATCACCG+AGG | 0.749317 | 7.3:+38094565 | MS.gene67346:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 38085676 | 38094688 | 38085676 | ID=MS.gene67346 |
| chr7.3 | mRNA | 38085676 | 38094688 | 38085676 | ID=MS.gene67346.t1;Parent=MS.gene67346 |
| chr7.3 | exon | 38085676 | 38085837 | 38085676 | ID=MS.gene67346.t1.exon1;Parent=MS.gene67346.t1 |
| chr7.3 | CDS | 38085676 | 38085837 | 38085676 | ID=cds.MS.gene67346.t1;Parent=MS.gene67346.t1 |
| chr7.3 | exon | 38086684 | 38086822 | 38086684 | ID=MS.gene67346.t1.exon2;Parent=MS.gene67346.t1 |
| chr7.3 | CDS | 38086684 | 38086822 | 38086684 | ID=cds.MS.gene67346.t1;Parent=MS.gene67346.t1 |
| chr7.3 | exon | 38087343 | 38087494 | 38087343 | ID=MS.gene67346.t1.exon3;Parent=MS.gene67346.t1 |
| chr7.3 | CDS | 38087343 | 38087494 | 38087343 | ID=cds.MS.gene67346.t1;Parent=MS.gene67346.t1 |
| chr7.3 | exon | 38087721 | 38087804 | 38087721 | ID=MS.gene67346.t1.exon4;Parent=MS.gene67346.t1 |
| chr7.3 | CDS | 38087721 | 38087804 | 38087721 | ID=cds.MS.gene67346.t1;Parent=MS.gene67346.t1 |
| chr7.3 | exon | 38087921 | 38087983 | 38087921 | ID=MS.gene67346.t1.exon5;Parent=MS.gene67346.t1 |
| chr7.3 | CDS | 38087921 | 38087983 | 38087921 | ID=cds.MS.gene67346.t1;Parent=MS.gene67346.t1 |
| chr7.3 | exon | 38088382 | 38088513 | 38088382 | ID=MS.gene67346.t1.exon6;Parent=MS.gene67346.t1 |
| chr7.3 | CDS | 38088382 | 38088513 | 38088382 | ID=cds.MS.gene67346.t1;Parent=MS.gene67346.t1 |
| chr7.3 | exon | 38088602 | 38088820 | 38088602 | ID=MS.gene67346.t1.exon7;Parent=MS.gene67346.t1 |
| chr7.3 | CDS | 38088602 | 38088820 | 38088602 | ID=cds.MS.gene67346.t1;Parent=MS.gene67346.t1 |
| chr7.3 | exon | 38089766 | 38089885 | 38089766 | ID=MS.gene67346.t1.exon8;Parent=MS.gene67346.t1 |
| chr7.3 | CDS | 38089766 | 38089885 | 38089766 | ID=cds.MS.gene67346.t1;Parent=MS.gene67346.t1 |
| chr7.3 | exon | 38090806 | 38090855 | 38090806 | ID=MS.gene67346.t1.exon9;Parent=MS.gene67346.t1 |
| chr7.3 | CDS | 38090806 | 38090855 | 38090806 | ID=cds.MS.gene67346.t1;Parent=MS.gene67346.t1 |
| chr7.3 | exon | 38091368 | 38091530 | 38091368 | ID=MS.gene67346.t1.exon10;Parent=MS.gene67346.t1 |
| chr7.3 | CDS | 38091368 | 38091530 | 38091368 | ID=cds.MS.gene67346.t1;Parent=MS.gene67346.t1 |
| chr7.3 | exon | 38091635 | 38091772 | 38091635 | ID=MS.gene67346.t1.exon11;Parent=MS.gene67346.t1 |
| chr7.3 | CDS | 38091635 | 38091772 | 38091635 | ID=cds.MS.gene67346.t1;Parent=MS.gene67346.t1 |
| chr7.3 | exon | 38092592 | 38092705 | 38092592 | ID=MS.gene67346.t1.exon12;Parent=MS.gene67346.t1 |
| chr7.3 | CDS | 38092592 | 38092705 | 38092592 | ID=cds.MS.gene67346.t1;Parent=MS.gene67346.t1 |
| chr7.3 | exon | 38092796 | 38092894 | 38092796 | ID=MS.gene67346.t1.exon13;Parent=MS.gene67346.t1 |
| chr7.3 | CDS | 38092796 | 38092894 | 38092796 | ID=cds.MS.gene67346.t1;Parent=MS.gene67346.t1 |
| chr7.3 | exon | 38093336 | 38093425 | 38093336 | ID=MS.gene67346.t1.exon14;Parent=MS.gene67346.t1 |
| chr7.3 | CDS | 38093336 | 38093425 | 38093336 | ID=cds.MS.gene67346.t1;Parent=MS.gene67346.t1 |
| chr7.3 | exon | 38093545 | 38093626 | 38093545 | ID=MS.gene67346.t1.exon15;Parent=MS.gene67346.t1 |
| chr7.3 | CDS | 38093545 | 38093626 | 38093545 | ID=cds.MS.gene67346.t1;Parent=MS.gene67346.t1 |
| chr7.3 | exon | 38094337 | 38094467 | 38094337 | ID=MS.gene67346.t1.exon16;Parent=MS.gene67346.t1 |
| chr7.3 | CDS | 38094337 | 38094467 | 38094337 | ID=cds.MS.gene67346.t1;Parent=MS.gene67346.t1 |
| chr7.3 | exon | 38094554 | 38094688 | 38094554 | ID=MS.gene67346.t1.exon17;Parent=MS.gene67346.t1 |
| chr7.3 | CDS | 38094554 | 38094688 | 38094554 | ID=cds.MS.gene67346.t1;Parent=MS.gene67346.t1 |
| Gene Sequence |
| Protein sequence |
