Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94949.t1 | XP_013460046.1 | 98.4 | 128 | 2 | 0 | 371 | 498 | 388 | 515 | 1.70E-62 | 251.1 |
| MS.gene94949.t1 | XP_013460046.1 | 94.9 | 39 | 2 | 0 | 1 | 39 | 1 | 39 | 8.10E-09 | 72.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94949.t1 | Q6AXS3 | 30.2 | 126 | 84 | 3 | 371 | 496 | 67 | 188 | 3.4e-08 | 62.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94949.t1 | A0A072UWT2 | 98.4 | 128 | 2 | 0 | 371 | 498 | 388 | 515 | 1.2e-62 | 251.1 |
| MS.gene94949.t1 | A0A072UWT2 | 94.9 | 39 | 2 | 0 | 1 | 39 | 1 | 39 | 5.8e-09 | 72.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04915 | MS.gene94949 | 0.802845 | 4.62E-49 | -1.69E-46 |
| MS.gene049703 | MS.gene94949 | -0.849427 | 3.26E-60 | -1.69E-46 |
| MS.gene049756 | MS.gene94949 | 0.801735 | 7.83E-49 | -1.69E-46 |
| MS.gene04984 | MS.gene94949 | 0.805414 | 1.35E-49 | -1.69E-46 |
| MS.gene049887 | MS.gene94949 | 0.802279 | 6.05E-49 | -1.69E-46 |
| MS.gene050317 | MS.gene94949 | 0.81808 | 2.36E-52 | -1.69E-46 |
| MS.gene050689 | MS.gene94949 | 0.818054 | 2.39E-52 | -1.69E-46 |
| MS.gene050762 | MS.gene94949 | 0.809521 | 1.82E-50 | -1.69E-46 |
| MS.gene050763 | MS.gene94949 | 0.811702 | 6.13E-51 | -1.69E-46 |
| MS.gene050815 | MS.gene94949 | 0.819671 | 1.03E-52 | -1.69E-46 |
| MS.gene051102 | MS.gene94949 | 0.821816 | 3.30E-53 | -1.69E-46 |
| MS.gene051245 | MS.gene94949 | 0.828705 | 7.75E-55 | -1.69E-46 |
| MS.gene052397 | MS.gene94949 | 0.812757 | 3.61E-51 | -1.69E-46 |
| MS.gene052434 | MS.gene94949 | 0.816992 | 4.16E-52 | -1.69E-46 |
| MS.gene052863 | MS.gene94949 | 0.806915 | 6.52E-50 | -1.69E-46 |
| MS.gene052896 | MS.gene94949 | 0.828119 | 1.07E-54 | -1.69E-46 |
| MS.gene053008 | MS.gene94949 | 0.806 | 1.02E-49 | -1.69E-46 |
| MS.gene053381 | MS.gene94949 | 0.862712 | 4.17E-64 | -1.69E-46 |
| MS.gene054379 | MS.gene94949 | 0.811919 | 5.50E-51 | -1.69E-46 |
| MS.gene05462 | MS.gene94949 | 0.804421 | 2.18E-49 | -1.69E-46 |
| MS.gene054823 | MS.gene94949 | 0.809954 | 1.47E-50 | -1.69E-46 |
| MS.gene055311 | MS.gene94949 | 0.826708 | 2.34E-54 | -1.69E-46 |
| MS.gene056181 | MS.gene94949 | 0.808325 | 3.27E-50 | -1.69E-46 |
| MS.gene056432 | MS.gene94949 | 0.823675 | 1.22E-53 | -1.69E-46 |
| MS.gene056760 | MS.gene94949 | 0.802001 | 6.90E-49 | -1.69E-46 |
| MS.gene057057 | MS.gene94949 | 0.82926 | 5.69E-55 | -1.69E-46 |
| MS.gene057140 | MS.gene94949 | 0.804206 | 2.41E-49 | -1.69E-46 |
| MS.gene057234 | MS.gene94949 | 0.800754 | 1.24E-48 | -1.69E-46 |
| MS.gene058182 | MS.gene94949 | 0.819616 | 1.06E-52 | -1.69E-46 |
| MS.gene058399 | MS.gene94949 | 0.821796 | 3.34E-53 | -1.69E-46 |
| MS.gene058646 | MS.gene94949 | 0.836126 | 1.12E-56 | -1.69E-46 |
| MS.gene058654 | MS.gene94949 | 0.836244 | 1.05E-56 | -1.69E-46 |
| MS.gene058758 | MS.gene94949 | 0.822061 | 2.90E-53 | -1.69E-46 |
| MS.gene058906 | MS.gene94949 | 0.819738 | 9.92E-53 | -1.69E-46 |
| MS.gene059713 | MS.gene94949 | 0.824111 | 9.63E-54 | -1.69E-46 |
| MS.gene060084 | MS.gene94949 | 0.809171 | 2.16E-50 | -1.69E-46 |
| MS.gene060296 | MS.gene94949 | 0.813214 | 2.87E-51 | -1.69E-46 |
| MS.gene060463 | MS.gene94949 | 0.836371 | 9.73E-57 | -1.69E-46 |
| MS.gene060465 | MS.gene94949 | 0.844446 | 7.52E-59 | -1.69E-46 |
| MS.gene060637 | MS.gene94949 | 0.801982 | 6.96E-49 | -1.69E-46 |
| MS.gene060702 | MS.gene94949 | 0.813376 | 2.64E-51 | -1.69E-46 |
| MS.gene060803 | MS.gene94949 | 0.8106 | 1.06E-50 | -1.69E-46 |
| MS.gene060869 | MS.gene94949 | 0.814868 | 1.24E-51 | -1.69E-46 |
| MS.gene060870 | MS.gene94949 | 0.817333 | 3.48E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94949.t1 | MTR_3g058970 | 93.404 | 758 | 33 | 3 | 1 | 741 | 1 | 758 | 0.0 | 1059 |
| MS.gene94949.t1 | MTR_5g095720 | 50.375 | 800 | 320 | 20 | 1 | 740 | 48 | 830 | 2.01e-167 | 506 |
| MS.gene94949.t1 | MTR_3g098990 | 37.857 | 420 | 217 | 9 | 354 | 755 | 91 | 484 | 2.66e-63 | 222 |
| MS.gene94949.t1 | MTR_5g096450 | 38.690 | 168 | 70 | 5 | 334 | 483 | 46 | 198 | 1.76e-22 | 97.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94949.t1 | AT4G26630 | 51.619 | 494 | 190 | 16 | 276 | 741 | 236 | 708 | 2.87e-100 | 327 |
| MS.gene94949.t1 | AT4G26630 | 51.619 | 494 | 190 | 16 | 276 | 741 | 236 | 708 | 2.87e-100 | 327 |
| MS.gene94949.t1 | AT5G55660 | 51.981 | 429 | 180 | 11 | 329 | 740 | 297 | 716 | 6.03e-99 | 324 |
| MS.gene94949.t1 | AT3G48710 | 38.072 | 415 | 207 | 11 | 354 | 755 | 53 | 430 | 1.12e-59 | 209 |
| MS.gene94949.t1 | AT5G63550 | 53.403 | 191 | 83 | 4 | 356 | 542 | 95 | 283 | 2.10e-53 | 194 |
| MS.gene94949.t1 | AT5G63550 | 53.125 | 192 | 83 | 5 | 356 | 542 | 95 | 284 | 6.47e-52 | 190 |
Find 182 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTCATCCTCTTCCATTTCT+TGG | 0.132393 | 3.1:-44557905 | None:intergenic |
| AAGGAAGATAAGAGTGATTC+TGG | 0.208382 | 3.1:+44563077 | MS.gene94949:CDS |
| CTGGTATTTGATGATTTCTT+AGG | 0.280013 | 3.1:-44563236 | None:intergenic |
| CTTTGCGATGTGTAATTCTT+TGG | 0.290042 | 3.1:-44558414 | None:intergenic |
| TTTCTTTGCAGATGATGTTT+TGG | 0.306714 | 3.1:-44563138 | None:intergenic |
| TAATCCTTTGCAGGCAGTTC+AGG | 0.309307 | 3.1:+44560444 | MS.gene94949:intron |
| AAGGAAATCAGTTGAGAGAT+TGG | 0.324108 | 3.1:+44558367 | MS.gene94949:CDS |
| CGATCACTAGTTGGAGTCTT+AGG | 0.336735 | 3.1:-44558332 | None:intergenic |
| GGAAGAAGTAAAAGATGATA+TGG | 0.337785 | 3.1:+44557833 | MS.gene94949:CDS |
| GCTAGTACTTCAAGAGGTTC+TGG | 0.338404 | 3.1:+44561162 | MS.gene94949:CDS |
| TGAATCTGAGAATGAGAAAA+TGG | 0.338891 | 3.1:+44557938 | MS.gene94949:CDS |
| AATGGAGTTGAAAAGTAATA+TGG | 0.345694 | 3.1:+44566380 | MS.gene94949:CDS |
| TTCTTCCTAGAAAATACCTT+TGG | 0.355080 | 3.1:-44563290 | None:intergenic |
| GAAGGAAGAGGGCGATGAAA+AGG | 0.357929 | 3.1:+44558130 | MS.gene94949:CDS |
| GATTTCTTAGGAGCTCTCTT+AGG | 0.361522 | 3.1:-44563224 | None:intergenic |
| ACTATCATCAGTCTTCCTTC+TGG | 0.367147 | 3.1:-44560195 | None:intergenic |
| TTGTTCCATACAATCCTCTT+TGG | 0.367750 | 3.1:+44560224 | MS.gene94949:CDS |
| ATAGTTCTGTGGAGATTTGC+GGG | 0.368886 | 3.1:+44566322 | MS.gene94949:CDS |
| AGCGTTCCGGTGAAATCATT+AGG | 0.380910 | 3.1:+44557327 | MS.gene94949:CDS |
| GGAAGAAGTAAAAGAGGATA+AGG | 0.387155 | 3.1:+44557761 | MS.gene94949:CDS |
| GCGTTCCGGTGAAATCATTA+GGG | 0.399042 | 3.1:+44557328 | MS.gene94949:CDS |
| TCCTTCCAAAGAGGATTGTA+TGG | 0.410961 | 3.1:-44560229 | None:intergenic |
| TGATGATGACATCCAAGAAA+TGG | 0.412541 | 3.1:+44557893 | MS.gene94949:CDS |
| AAATTCTCTATTGTGGGAAA+TGG | 0.413078 | 3.1:+44566362 | MS.gene94949:CDS |
| CCTTTCAATTTGCAGGGCCG+TGG | 0.427849 | 3.1:+44558580 | MS.gene94949:intron |
| CTAAGCAGAAAAGGTTACTA+AGG | 0.430405 | 3.1:+44563626 | MS.gene94949:intron |
| TCAAAGTCCAAAGAGAAAAC+TGG | 0.434080 | 3.1:+44563371 | MS.gene94949:CDS |
| GGATGTTGATGCTGAGGTTA+AGG | 0.436639 | 3.1:+44557959 | MS.gene94949:CDS |
| GTGTAATAAAGAGAAGTTAC+TGG | 0.440933 | 3.1:+44560741 | MS.gene94949:CDS |
| GAAGAAGATAAGAAAGTTGA+GGG | 0.441554 | 3.1:+44557447 | MS.gene94949:CDS |
| AGGATAAGAAAGATGAAGAT+GGG | 0.442056 | 3.1:+44557487 | MS.gene94949:CDS |
| AAAGAGGAGAAGAAAGATGA+TGG | 0.445699 | 3.1:+44557735 | MS.gene94949:CDS |
| AAAGAGGAGAAGAAAGATGA+TGG | 0.447587 | 3.1:+44557699 | MS.gene94949:CDS |
| ACAAACCTTTGTTGTTGACT+TGG | 0.451597 | 3.1:-44560794 | None:intergenic |
| CTCCTCATTAACCTTCCCTC+TGG | 0.452194 | 3.1:-44558270 | None:intergenic |
| AAAGAGGATAAGGAAGTTGA+TGG | 0.453853 | 3.1:+44557771 | MS.gene94949:CDS |
| AGCAGAGACGGAGGAGGAGG+AGG | 0.454107 | 3.1:+44558163 | MS.gene94949:CDS |
| TTCAAATGGAGGTAGCGTTC+CGG | 0.454980 | 3.1:+44557314 | MS.gene94949:CDS |
| TACAGAAGATAAAGAAGAAA+AGG | 0.455304 | 3.1:+44557986 | MS.gene94949:CDS |
| AATAGTTCTGTGGAGATTTG+CGG | 0.456152 | 3.1:+44566321 | MS.gene94949:CDS |
| GAAAACTGAAGTAGAGGAGA+AGG | 0.456878 | 3.1:+44558064 | MS.gene94949:CDS |
| TGAAGCAGAGACGGAGGAGG+AGG | 0.457761 | 3.1:+44558160 | MS.gene94949:CDS |
| GAGGATAAGAAAGATGAAGA+TGG | 0.461328 | 3.1:+44557486 | MS.gene94949:CDS |
| AGAGACGGAGGAGGAGGAGG+AGG | 0.464333 | 3.1:+44558166 | MS.gene94949:CDS |
| AGATAAGGCAGAGGGTAGTA+AGG | 0.465340 | 3.1:+44558223 | MS.gene94949:CDS |
| ACTGATTTCCTTTCTCGCAC+AGG | 0.466431 | 3.1:-44558356 | None:intergenic |
| GAAAGTTGAGGGTGTGGAAA+AGG | 0.466680 | 3.1:+44557458 | MS.gene94949:CDS |
| CTAGTTGGAGTCTTAGGCTC+TGG | 0.467049 | 3.1:-44558326 | None:intergenic |
| AGAAGAAAAGTGAGCAAGGG+GGG | 0.467351 | 3.1:+44563309 | MS.gene94949:CDS |
| GAGGAAGACTTGGTTGGAGT+TGG | 0.468240 | 3.1:-44563350 | None:intergenic |
| TAAAGAAGTTGACTTCAATA+CGG | 0.473503 | 3.1:+44563722 | MS.gene94949:CDS |
| TTAGGAGCTCTCTTAGGTGG+TGG | 0.477724 | 3.1:-44563218 | None:intergenic |
| TCGATATCATCATCAGACTT+TGG | 0.479807 | 3.1:-44563260 | None:intergenic |
| GTTTCATCTTCAGATTTCTC+AGG | 0.481662 | 3.1:-44563038 | None:intergenic |
| GTGATCGCCCTGTGCGAGAA+AGG | 0.482309 | 3.1:+44558348 | MS.gene94949:CDS |
| AGGAAGATAAGAGTGATTCT+GGG | 0.482607 | 3.1:+44563078 | MS.gene94949:CDS |
| GAAAAGGTTACTAAGGGAAA+AGG | 0.483043 | 3.1:+44563633 | MS.gene94949:intron |
| TTTGGACTTTGAGGAAGACT+TGG | 0.485697 | 3.1:-44563360 | None:intergenic |
| TGCGGTGGAAGAAGTGAAAG+AGG | 0.489024 | 3.1:+44557683 | MS.gene94949:CDS |
| TTGAAAAGTAATATGGAGGA+TGG | 0.490653 | 3.1:+44566387 | MS.gene94949:CDS |
| AACTGATGGAGGGAAAGTCT+TGG | 0.495923 | 3.1:+44557377 | MS.gene94949:CDS |
| GTTTCTAAGACTGATTCAAA+TGG | 0.497991 | 3.1:+44557300 | MS.gene94949:CDS |
| GACTTTGAGGAAGACTTGGT+TGG | 0.500717 | 3.1:-44563356 | None:intergenic |
| CGCACAGGGCGATCACTAGT+TGG | 0.500745 | 3.1:-44558341 | None:intergenic |
| AGATAAGAAAGTTGAGGGTG+TGG | 0.501886 | 3.1:+44557452 | MS.gene94949:CDS |
| CTGATTTCCTTTCTCGCACA+GGG | 0.502349 | 3.1:-44558355 | None:intergenic |
| AAAGAGGATAAGAAAGCTGA+TGG | 0.502851 | 3.1:+44557522 | MS.gene94949:CDS |
| AAGAGGAGAAGAAAGATGAT+GGG | 0.505907 | 3.1:+44557736 | MS.gene94949:CDS |
| CTGATCATCTGTGGGACTTG+AGG | 0.506815 | 3.1:-44563673 | None:intergenic |
| TGTAGCTGATGAAGTAAAAG+AGG | 0.506876 | 3.1:+44557614 | MS.gene94949:CDS |
| TGTGGTACTTGCAGATAAAG+AGG | 0.509300 | 3.1:+44560969 | MS.gene94949:CDS |
| AAGAAAGACTTGGGAACTGA+TGG | 0.509413 | 3.1:+44557363 | MS.gene94949:CDS |
| AAGTAAAAGAAAAGCTAGAC+AGG | 0.509647 | 3.1:+44560719 | MS.gene94949:CDS |
| AGAGACAGAGGAGAAGGAAG+AGG | 0.509912 | 3.1:+44558118 | MS.gene94949:CDS |
| GGAGAAGAAAGATGATGGGG+TGG | 0.510926 | 3.1:+44557740 | MS.gene94949:CDS |
| GGAGATTTGCGGGAATCAGA+TGG | 0.512416 | 3.1:+44566332 | MS.gene94949:CDS |
| AGGTCAAGAGTAATATATTG+AGG | 0.513587 | 3.1:+44560464 | MS.gene94949:CDS |
| ATCTGCAAGTACCACAGTTG+TGG | 0.516319 | 3.1:-44560962 | None:intergenic |
| TAAATCAAAAGAAGAAGATA+AGG | 0.520812 | 3.1:+44558208 | MS.gene94949:CDS |
| ATCATCATCAGACTTTGGTC+TGG | 0.520904 | 3.1:-44563255 | None:intergenic |
| TGAAGAAGATAAGAAAGTTG+AGG | 0.521925 | 3.1:+44557446 | MS.gene94949:CDS |
| GGTGGAAAAGAAAGATAATG+AGG | 0.524990 | 3.1:+44557809 | MS.gene94949:CDS |
| TTCTTAGGAGCTCTCTTAGG+TGG | 0.526942 | 3.1:-44563221 | None:intergenic |
| CACAGTTGTGGTTGCATGAG+GGG | 0.528551 | 3.1:-44560950 | None:intergenic |
| TGAGGAGAAAACTGAAGTAG+AGG | 0.528696 | 3.1:+44558058 | MS.gene94949:CDS |
| TAAGAAAGATGAAGATGGGG+TGG | 0.530937 | 3.1:+44557491 | MS.gene94949:CDS |
| TGATGTGGGAGAAGTAAAAG+AGG | 0.530959 | 3.1:+44557647 | MS.gene94949:CDS |
| AAATGAAGATTCTGCAGGAG+TGG | 0.531285 | 3.1:+44562929 | MS.gene94949:CDS |
| AGCATTGAGGAGAAAGAAGA+GGG | 0.531988 | 3.1:+44558029 | MS.gene94949:CDS |
| AGAGGATAAGAAAGATGATG+TGG | 0.533254 | 3.1:+44557632 | MS.gene94949:CDS |
| AAGAGGAGAAGAAAGATGAT+GGG | 0.534575 | 3.1:+44557700 | MS.gene94949:CDS |
| TGGGGCTGATGAAGTAAAAG+AGG | 0.535147 | 3.1:+44557719 | MS.gene94949:CDS |
| GAAGTAGAGGAGAAGGAAGA+AGG | 0.536555 | 3.1:+44558071 | MS.gene94949:CDS |
| TGATAGTGTGAAAGAAGCAG+TGG | 0.537441 | 3.1:+44557860 | MS.gene94949:CDS |
| TGGGGTGGGAGAAGTAAAAG+AGG | 0.537965 | 3.1:+44557506 | MS.gene94949:CDS |
| CCTTCCCTCTCCTTCCAAAG+AGG | 0.541109 | 3.1:-44560238 | None:intergenic |
| TCCATACAATCCTCTTTGGA+AGG | 0.542692 | 3.1:+44560228 | MS.gene94949:CDS |
| GAGGGTAGTAAGGCTGAGAA+AGG | 0.543123 | 3.1:+44558233 | MS.gene94949:CDS |
| AACGCCACAGAAATCTGAAA+AGG | 0.544460 | 3.1:+44563058 | MS.gene94949:CDS |
| AAACGAGGTACACCAAGGTC+TGG | 0.545991 | 3.1:+44561135 | MS.gene94949:CDS |
| AACTGAAGCAGAGACGGAGG+AGG | 0.546642 | 3.1:+44558157 | MS.gene94949:CDS |
| AGTTGTTGAGAAGAAAGACT+TGG | 0.547694 | 3.1:+44557353 | MS.gene94949:CDS |
| GGAGAAAACTGAAGCAGAGA+CGG | 0.548254 | 3.1:+44558151 | MS.gene94949:CDS |
| GAGACAGAGGAGAAGGAAGA+GGG | 0.548993 | 3.1:+44558119 | MS.gene94949:CDS |
| TGAAGAAGAGACAGAGGAGA+AGG | 0.551387 | 3.1:+44558112 | MS.gene94949:CDS |
| GAGGTACACCAAGGTCTGGT+GGG | 0.555694 | 3.1:+44561139 | MS.gene94949:CDS |
| GAAAGAAGAGGGTAATGATG+AGG | 0.555999 | 3.1:+44558040 | MS.gene94949:CDS |
| GTGGAAAAGAAAGATAATGA+GGG | 0.556797 | 3.1:+44557810 | MS.gene94949:CDS |
| TGGGGTGGAAGAAGTAAAAG+AGG | 0.558470 | 3.1:+44557755 | MS.gene94949:CDS |
| TGCCAGAGGGAAGGTTAATG+AGG | 0.559631 | 3.1:+44558268 | MS.gene94949:CDS |
| AAAAGAAGAAGATAAGGCAG+AGG | 0.559965 | 3.1:+44558214 | MS.gene94949:CDS |
| TGACATCCAAGAAATGGAAG+AGG | 0.563136 | 3.1:+44557899 | MS.gene94949:CDS |
| ACCGAGTAGTTTCAGAATGT+CGG | 0.565823 | 3.1:-44564315 | None:intergenic |
| GTACTAGCCCCACCAGACCT+TGG | 0.566752 | 3.1:-44561147 | None:intergenic |
| CGAGGTACACCAAGGTCTGG+TGG | 0.566882 | 3.1:+44561138 | MS.gene94949:CDS |
| TGGGGACGATGAAGTAAAAG+AGG | 0.568049 | 3.1:+44557542 | MS.gene94949:CDS |
| TTCTGAACTAAATAGTTCTG+TGG | 0.568605 | 3.1:+44566311 | MS.gene94949:CDS |
| TTTCAGAATGTCGGTAAATG+TGG | 0.569605 | 3.1:-44564306 | None:intergenic |
| TGGAAAAGAAAGATAATGAG+GGG | 0.570434 | 3.1:+44557811 | MS.gene94949:CDS |
| GAGATTTGCGGGAATCAGAT+GGG | 0.570808 | 3.1:+44566333 | MS.gene94949:CDS |
| AGATGCAGAGGGTAGCATTG+AGG | 0.571029 | 3.1:+44558016 | MS.gene94949:CDS |
| ACCACAGTTGTGGTTGCATG+AGG | 0.573342 | 3.1:-44560952 | None:intergenic |
| AAAGACTTGGGAACTGATGG+AGG | 0.575253 | 3.1:+44557366 | MS.gene94949:CDS |
| AAGAAAGATGAAGATGGGGT+GGG | 0.575639 | 3.1:+44557492 | MS.gene94949:CDS |
| GAAAACTGAAGCAGAGACGG+AGG | 0.576529 | 3.1:+44558154 | MS.gene94949:CDS |
| TAGTGTGAAAGAAGCAGTGG+AGG | 0.578257 | 3.1:+44557863 | MS.gene94949:CDS |
| GGAAGAAGAAAAGTGAGCAA+GGG | 0.579111 | 3.1:+44563306 | MS.gene94949:CDS |
| AGGAAGAAGAAAAGTGAGCA+AGG | 0.579169 | 3.1:+44563305 | MS.gene94949:CDS |
| ACTTCCCCTAATGATTTCAC+CGG | 0.579831 | 3.1:-44557333 | None:intergenic |
| GGAGTTGAAAAGTAATATGG+AGG | 0.581336 | 3.1:+44566383 | MS.gene94949:CDS |
| TAGCATTGAGGAGAAAGAAG+AGG | 0.581637 | 3.1:+44558028 | MS.gene94949:CDS |
| TCTAAGACTGATTCAAATGG+AGG | 0.582420 | 3.1:+44557303 | MS.gene94949:CDS |
| ACAATCCTCTTTGGAAGGAG+AGG | 0.583278 | 3.1:+44560233 | MS.gene94949:CDS |
| AAGCAAGATCAGTATGGGTG+AGG | 0.583972 | 3.1:+44557260 | None:intergenic |
| GAGGATAAGAAAGATGATGT+GGG | 0.584545 | 3.1:+44557633 | MS.gene94949:CDS |
| CAATCCTCTTTGGAAGGAGA+GGG | 0.585119 | 3.1:+44560234 | MS.gene94949:CDS |
| GGGTGTGGAAAAGGTACAAG+AGG | 0.588552 | 3.1:+44557467 | MS.gene94949:CDS |
| GGATAAGAAAGATGAAGATG+GGG | 0.592297 | 3.1:+44557488 | MS.gene94949:CDS |
| TCACGCAACTGATCATCTGT+GGG | 0.592688 | 3.1:-44563681 | None:intergenic |
| AGAGGAGAAGAAAGATGATG+GGG | 0.593216 | 3.1:+44557737 | MS.gene94949:CDS |
| AAGAGGATAAGAAAGCTGAT+GGG | 0.593551 | 3.1:+44557523 | MS.gene94949:CDS |
| CCACAGTTGTGGTTGCATGA+GGG | 0.596193 | 3.1:-44560951 | None:intergenic |
| AGAGGAGAAGAAAGATGATG+GGG | 0.596993 | 3.1:+44557701 | MS.gene94949:CDS |
| GTTGTTGAGAAGAAAGACTT+GGG | 0.597406 | 3.1:+44557354 | MS.gene94949:CDS |
| GAAGAAGAAAAGTGAGCAAG+GGG | 0.597718 | 3.1:+44563307 | MS.gene94949:CDS |
| TAAGCAGAAAAGGTTACTAA+GGG | 0.598561 | 3.1:+44563627 | MS.gene94949:intron |
| GGATAAGAAAGATGATGCGG+TGG | 0.599955 | 3.1:+44557668 | MS.gene94949:CDS |
| GGGAAAGTCTTGGAGAGTAA+CGG | 0.606902 | 3.1:+44557387 | MS.gene94949:CDS |
| TGACACAGAAGATGAATCAG+AGG | 0.610205 | 3.1:+44562968 | MS.gene94949:CDS |
| TGATGGTGCAGATGAAGTAA+AGG | 0.610805 | 3.1:+44557788 | MS.gene94949:CDS |
| AAAGAAGAAGATAAGGCAGA+GGG | 0.612875 | 3.1:+44558215 | MS.gene94949:CDS |
| GAAATCTGAAGAAGAGACAG+AGG | 0.614258 | 3.1:+44558106 | MS.gene94949:CDS |
| ATCACGCAACTGATCATCTG+TGG | 0.614796 | 3.1:-44563682 | None:intergenic |
| AATCAAAACTGAGAAAACTA+CGG | 0.615646 | 3.1:+44563175 | MS.gene94949:CDS |
| TATGGGTGAGGAAGAAGTAG+TGG | 0.616556 | 3.1:+44557272 | None:intergenic |
| TGGTGCAGATGAAGTAAAGG+TGG | 0.616571 | 3.1:+44557791 | MS.gene94949:CDS |
| ACCGACATTCTGAAACTACT+CGG | 0.616858 | 3.1:+44564314 | MS.gene94949:CDS |
| AAGAAGAAAAGTGAGCAAGG+GGG | 0.621185 | 3.1:+44563308 | MS.gene94949:CDS |
| TGGCATTTAAGTTATCCAGA+AGG | 0.627812 | 3.1:+44560180 | MS.gene94949:CDS |
| AGATATTATTGCTAAGCTGA+CGG | 0.633751 | 3.1:+44560915 | MS.gene94949:CDS |
| CAAAGAATTACACATCGCAA+AGG | 0.636803 | 3.1:+44558415 | MS.gene94949:CDS |
| AATTACCAAGTCAACAACAA+AGG | 0.637558 | 3.1:+44560789 | MS.gene94949:CDS |
| GGTGGGGCTAGTACTTCAAG+AGG | 0.642776 | 3.1:+44561156 | MS.gene94949:CDS |
| TCTGCAAAGAAAGAGTCCGC+CGG | 0.646881 | 3.1:+44563149 | MS.gene94949:CDS |
| ATCAGTCAAGCAAGAAGCGT+AGG | 0.648173 | 3.1:+44561103 | MS.gene94949:intron |
| AGAGGATAAGAAAGCTGATG+GGG | 0.650998 | 3.1:+44557524 | MS.gene94949:CDS |
| TACTTCAAGAGGTTCTGGAA+AGG | 0.652399 | 3.1:+44561167 | MS.gene94949:CDS |
| AGTCAAGCAAGAAGCGTAGG+CGG | 0.654264 | 3.1:+44561106 | MS.gene94949:intron |
| GGAGAGTAACGGAGTCAAAG+AGG | 0.655908 | 3.1:+44557398 | MS.gene94949:CDS |
| CCCTCATGCAACCACAACTG+TGG | 0.656212 | 3.1:+44560951 | MS.gene94949:CDS |
| GACACAGAAGATGAATCAGA+GGG | 0.663780 | 3.1:+44562969 | MS.gene94949:CDS |
| GAAAATGGATGTTGATGCTG+AGG | 0.663965 | 3.1:+44557953 | MS.gene94949:CDS |
| TGATATCGATGAAAGTCCAA+AGG | 0.664607 | 3.1:+44563274 | MS.gene94949:CDS |
| CCTTTAAAAGATATACCCAA+TGG | 0.668040 | 3.1:+44558607 | MS.gene94949:CDS |
| AAGACTTGGGAACTGATGGA+GGG | 0.668385 | 3.1:+44557367 | MS.gene94949:CDS |
| AGAGGATAAGAAAGATGATG+CGG | 0.668675 | 3.1:+44557665 | MS.gene94949:CDS |
| GGAAAAGAAAGATAATGAGG+GGG | 0.671001 | 3.1:+44557812 | MS.gene94949:CDS |
| CGTTCCGGTGAAATCATTAG+GGG | 0.675116 | 3.1:+44557329 | MS.gene94949:CDS |
| CCTCTTTGGAAGGAGAGGGA+AGG | 0.676579 | 3.1:+44560238 | MS.gene94949:CDS |
| AGGTACACCAAGGTCTGGTG+GGG | 0.685613 | 3.1:+44561140 | MS.gene94949:CDS |
| CGTAGGCGGACTGTCAAACG+AGG | 0.686061 | 3.1:+44561120 | MS.gene94949:CDS |
| CTGTCAAACGAGGTACACCA+AGG | 0.724868 | 3.1:+44561130 | MS.gene94949:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 44557273 | 44566443 | 44557273 | ID=MS.gene94949 |
| chr3.1 | mRNA | 44557273 | 44566443 | 44557273 | ID=MS.gene94949.t1;Parent=MS.gene94949 |
| chr3.1 | exon | 44557273 | 44558436 | 44557273 | ID=MS.gene94949.t1.exon1;Parent=MS.gene94949.t1 |
| chr3.1 | CDS | 44557273 | 44558436 | 44557273 | ID=cds.MS.gene94949.t1;Parent=MS.gene94949.t1 |
| chr3.1 | exon | 44558595 | 44558628 | 44558595 | ID=MS.gene94949.t1.exon2;Parent=MS.gene94949.t1 |
| chr3.1 | CDS | 44558595 | 44558628 | 44558595 | ID=cds.MS.gene94949.t1;Parent=MS.gene94949.t1 |
| chr3.1 | exon | 44560180 | 44560259 | 44560180 | ID=MS.gene94949.t1.exon3;Parent=MS.gene94949.t1 |
| chr3.1 | CDS | 44560180 | 44560259 | 44560180 | ID=cds.MS.gene94949.t1;Parent=MS.gene94949.t1 |
| chr3.1 | exon | 44560457 | 44560516 | 44560457 | ID=MS.gene94949.t1.exon4;Parent=MS.gene94949.t1 |
| chr3.1 | CDS | 44560457 | 44560516 | 44560457 | ID=cds.MS.gene94949.t1;Parent=MS.gene94949.t1 |
| chr3.1 | exon | 44560703 | 44560810 | 44560703 | ID=MS.gene94949.t1.exon5;Parent=MS.gene94949.t1 |
| chr3.1 | CDS | 44560703 | 44560810 | 44560703 | ID=cds.MS.gene94949.t1;Parent=MS.gene94949.t1 |
| chr3.1 | exon | 44560913 | 44560990 | 44560913 | ID=MS.gene94949.t1.exon6;Parent=MS.gene94949.t1 |
| chr3.1 | CDS | 44560913 | 44560990 | 44560913 | ID=cds.MS.gene94949.t1;Parent=MS.gene94949.t1 |
| chr3.1 | exon | 44561108 | 44561188 | 44561108 | ID=MS.gene94949.t1.exon7;Parent=MS.gene94949.t1 |
| chr3.1 | CDS | 44561108 | 44561188 | 44561108 | ID=cds.MS.gene94949.t1;Parent=MS.gene94949.t1 |
| chr3.1 | exon | 44562918 | 44563392 | 44562918 | ID=MS.gene94949.t1.exon8;Parent=MS.gene94949.t1 |
| chr3.1 | CDS | 44562918 | 44563392 | 44562918 | ID=cds.MS.gene94949.t1;Parent=MS.gene94949.t1 |
| chr3.1 | exon | 44563634 | 44563743 | 44563634 | ID=MS.gene94949.t1.exon9;Parent=MS.gene94949.t1 |
| chr3.1 | CDS | 44563634 | 44563743 | 44563634 | ID=cds.MS.gene94949.t1;Parent=MS.gene94949.t1 |
| chr3.1 | exon | 44564305 | 44564335 | 44564305 | ID=MS.gene94949.t1.exon10;Parent=MS.gene94949.t1 |
| chr3.1 | CDS | 44564305 | 44564335 | 44564305 | ID=cds.MS.gene94949.t1;Parent=MS.gene94949.t1 |
| chr3.1 | exon | 44566295 | 44566443 | 44566295 | ID=MS.gene94949.t1.exon11;Parent=MS.gene94949.t1 |
| chr3.1 | CDS | 44566295 | 44566443 | 44566295 | ID=cds.MS.gene94949.t1;Parent=MS.gene94949.t1 |
| Gene Sequence |
| Protein sequence |
