Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96102.t1 | XP_003605992.2 | 98.9 | 272 | 3 | 0 | 32 | 303 | 456 | 727 | 2.40E-147 | 531.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96102.t1 | Q9SHS7 | 87.1 | 271 | 30 | 3 | 36 | 303 | 465 | 733 | 5.4e-127 | 455.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96102.t1 | G7JET4 | 98.9 | 272 | 3 | 0 | 32 | 303 | 456 | 727 | 1.8e-147 | 531.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049283 | MS.gene96102 | 0.829277 | 5.63E-55 | -1.69E-46 |
| MS.gene049983 | MS.gene96102 | 0.812505 | 4.10E-51 | -1.69E-46 |
| MS.gene050084 | MS.gene96102 | 0.854356 | 1.30E-61 | -1.69E-46 |
| MS.gene050085 | MS.gene96102 | 0.864539 | 1.13E-64 | -1.69E-46 |
| MS.gene050213 | MS.gene96102 | 0.811399 | 7.14E-51 | -1.69E-46 |
| MS.gene050359 | MS.gene96102 | 0.855808 | 4.92E-62 | -1.69E-46 |
| MS.gene050361 | MS.gene96102 | 0.832506 | 9.09E-56 | -1.69E-46 |
| MS.gene050384 | MS.gene96102 | 0.813743 | 2.19E-51 | -1.69E-46 |
| MS.gene050386 | MS.gene96102 | 0.822626 | 2.14E-53 | -1.69E-46 |
| MS.gene050414 | MS.gene96102 | 0.833354 | 5.60E-56 | -1.69E-46 |
| MS.gene050646 | MS.gene96102 | 0.851283 | 9.81E-61 | -1.69E-46 |
| MS.gene050654 | MS.gene96102 | 0.852704 | 3.88E-61 | -1.69E-46 |
| MS.gene050931 | MS.gene96102 | 0.817074 | 3.98E-52 | -1.69E-46 |
| MS.gene050941 | MS.gene96102 | 0.806997 | 6.27E-50 | -1.69E-46 |
| MS.gene050945 | MS.gene96102 | 0.807507 | 4.89E-50 | -1.69E-46 |
| MS.gene051043 | MS.gene96102 | 0.802691 | 4.98E-49 | -1.69E-46 |
| MS.gene051102 | MS.gene96102 | 0.80217 | 6.37E-49 | -1.69E-46 |
| MS.gene051233 | MS.gene96102 | 0.804948 | 1.69E-49 | -1.69E-46 |
| MS.gene051234 | MS.gene96102 | 0.802947 | 4.41E-49 | -1.69E-46 |
| MS.gene051343 | MS.gene96102 | 0.829126 | 6.13E-55 | -1.69E-46 |
| MS.gene051381 | MS.gene96102 | 0.832114 | 1.14E-55 | -1.69E-46 |
| MS.gene051856 | MS.gene96102 | 0.803264 | 3.79E-49 | -1.69E-46 |
| MS.gene052242 | MS.gene96102 | -0.852623 | 4.09E-61 | -1.69E-46 |
| MS.gene052307 | MS.gene96102 | 0.827618 | 1.42E-54 | -1.69E-46 |
| MS.gene052342 | MS.gene96102 | 0.802184 | 6.33E-49 | -1.69E-46 |
| MS.gene052609 | MS.gene96102 | 0.837165 | 6.11E-57 | -1.69E-46 |
| MS.gene052776 | MS.gene96102 | 0.822197 | 2.69E-53 | -1.69E-46 |
| MS.gene052994 | MS.gene96102 | 0.828126 | 1.07E-54 | -1.69E-46 |
| MS.gene053058 | MS.gene96102 | 0.831691 | 1.45E-55 | -1.69E-46 |
| MS.gene053143 | MS.gene96102 | 0.814355 | 1.61E-51 | -1.69E-46 |
| MS.gene053486 | MS.gene96102 | 0.804036 | 2.62E-49 | -1.69E-46 |
| MS.gene053726 | MS.gene96102 | 0.840269 | 9.62E-58 | -1.69E-46 |
| MS.gene054893 | MS.gene96102 | 0.80793 | 3.97E-50 | -1.69E-46 |
| MS.gene055311 | MS.gene96102 | 0.809129 | 2.20E-50 | -1.69E-46 |
| MS.gene056045 | MS.gene96102 | 0.840145 | 1.04E-57 | -1.69E-46 |
| MS.gene056097 | MS.gene96102 | 0.890761 | 7.35E-74 | -1.69E-46 |
| MS.gene05615 | MS.gene96102 | 0.823347 | 1.45E-53 | -1.69E-46 |
| MS.gene056181 | MS.gene96102 | 0.845153 | 4.85E-59 | -1.69E-46 |
| MS.gene056578 | MS.gene96102 | 0.807893 | 4.05E-50 | -1.69E-46 |
| MS.gene056787 | MS.gene96102 | 0.813777 | 2.16E-51 | -1.69E-46 |
| MS.gene056849 | MS.gene96102 | 0.802071 | 6.67E-49 | -1.69E-46 |
| MS.gene058054 | MS.gene96102 | 0.823818 | 1.13E-53 | -1.69E-46 |
| MS.gene058292 | MS.gene96102 | 0.837647 | 4.59E-57 | -1.69E-46 |
| MS.gene058638 | MS.gene96102 | 0.833437 | 5.34E-56 | -1.69E-46 |
| MS.gene058639 | MS.gene96102 | 0.830249 | 3.27E-55 | -1.69E-46 |
| MS.gene058758 | MS.gene96102 | 0.80579 | 1.13E-49 | -1.69E-46 |
| MS.gene059007 | MS.gene96102 | 0.906125 | 2.07E-80 | -1.69E-46 |
| MS.gene060296 | MS.gene96102 | 0.80424 | 2.38E-49 | -1.69E-46 |
| MS.gene060563 | MS.gene96102 | 0.816559 | 5.20E-52 | -1.69E-46 |
| MS.gene060933 | MS.gene96102 | 0.846518 | 2.07E-59 | -1.69E-46 |
| MS.gene060937 | MS.gene96102 | 0.811049 | 8.50E-51 | -1.69E-46 |
| MS.gene061006 | MS.gene96102 | 0.832275 | 1.04E-55 | -1.69E-46 |
| MS.gene061100 | MS.gene96102 | 0.801493 | 8.77E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 95 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTAGCAGCAGTTGCACTTTC+TGG | 0.074910 | 4.2:+38950743 | None:intergenic |
| AGGGCACCAATTAAAATATT+TGG | 0.147759 | 4.2:-38949975 | MS.gene96102:CDS |
| AGAGACAAATATACCTTCTT+TGG | 0.185188 | 4.2:+38950683 | None:intergenic |
| AGCCTGATTCCACCAGAATT+TGG | 0.192994 | 4.2:+38950972 | None:intergenic |
| GTGATTTACATGGGCAGTTT+GGG | 0.211414 | 4.2:-38949953 | MS.gene96102:CDS |
| TGCTGATGGTGCAGTTGTTT+TGG | 0.234469 | 4.2:-38951825 | MS.gene96102:CDS |
| CACTGAAAATGCCTTGCTTC+AGG | 0.242308 | 4.2:-38951753 | MS.gene96102:CDS |
| GAATTTGGGCCTCCAGATTC+AGG | 0.267505 | 4.2:+38950987 | None:intergenic |
| ATGCGCCTCTTTGACGAGTA+TGG | 0.303119 | 4.2:-38949924 | MS.gene96102:CDS |
| GGTGATTTACATGGGCAGTT+TGG | 0.308128 | 4.2:-38949954 | MS.gene96102:CDS |
| GCCTGATTCCACCAGAATTT+GGG | 0.308521 | 4.2:+38950973 | None:intergenic |
| GAATCTGGAGGCCCAAATTC+TGG | 0.332172 | 4.2:-38950984 | MS.gene96102:CDS |
| TTATGCTGCAGGAATCTTGC+TGG | 0.359210 | 4.2:-38952008 | None:intergenic |
| TCCATTCTCTTGCCGTGCCT+TGG | 0.370864 | 4.2:+38951085 | None:intergenic |
| AACTGGTGGTTTCCAGCCAC+GGG | 0.386044 | 4.2:+38950091 | None:intergenic |
| GAGACAAATATACCTTCTTT+GGG | 0.386185 | 4.2:+38950684 | None:intergenic |
| GCAGAGACTGGTGGAGCATT+AGG | 0.392732 | 4.2:-38950833 | MS.gene96102:CDS |
| GAAGGCAGACGGGTCAGTTA+TGG | 0.394505 | 4.2:-38950770 | MS.gene96102:CDS |
| TAGCAAAGGAGTTGAGTATC+TGG | 0.402168 | 4.2:-38951159 | MS.gene96102:CDS |
| ACTGAAAATGCCTTGCTTCA+GGG | 0.402168 | 4.2:-38951752 | MS.gene96102:CDS |
| GATATGGATTTGTTGATGAT+AGG | 0.404718 | 4.2:-38951874 | MS.gene96102:CDS |
| GGAAGAGTACCAGGACGATA+TGG | 0.405806 | 4.2:-38951890 | MS.gene96102:CDS |
| GCCCAAATTCTGGTGGAATC+AGG | 0.409039 | 4.2:-38950974 | MS.gene96102:CDS |
| GTATACATGTCACCATTTAC+AGG | 0.414673 | 4.2:+38951785 | None:intergenic |
| AAGGCAGACGGGTCAGTTAT+GGG | 0.415806 | 4.2:-38950769 | MS.gene96102:CDS |
| TCCATGATTAAACCTGAATC+TGG | 0.419985 | 4.2:-38950999 | MS.gene96102:CDS |
| ATTGATCAGTTTGAAAATGA+AGG | 0.423462 | 4.2:-38950788 | MS.gene96102:CDS |
| AGCTGCGTCTGATGTACAAA+TGG | 0.426597 | 4.2:-38951912 | MS.gene96102:CDS |
| ACCTCTTAAAACCCCGTGGC+TGG | 0.426692 | 4.2:-38950103 | MS.gene96102:CDS |
| ATGCCTTGCTTCAGGGGTCT+AGG | 0.428340 | 4.2:-38951745 | MS.gene96102:intron |
| GCCAAGGCACGGCAAGAGAA+TGG | 0.432499 | 4.2:-38951086 | MS.gene96102:CDS |
| GAGCATTAGGTGGCATGGTT+AGG | 0.435993 | 4.2:-38950820 | MS.gene96102:CDS |
| AAAATATTTGGTGATTTACA+TGG | 0.439355 | 4.2:-38949963 | MS.gene96102:CDS |
| TCAGCCCCACGGTCCCGATC+AGG | 0.440492 | 4.2:+38951050 | None:intergenic |
| GTGGTTATTGCCGCAGAGAC+TGG | 0.443202 | 4.2:-38950845 | MS.gene96102:CDS |
| GCTATATCACCGGCAGTTGA+TGG | 0.459620 | 4.2:+38949897 | None:intergenic |
| CTGAAAATGCCTTGCTTCAG+GGG | 0.460104 | 4.2:-38951751 | MS.gene96102:CDS |
| CTGTATGACAGTTGGTTCGC+TGG | 0.466427 | 4.2:+38950001 | None:intergenic |
| CACTGGCTGCTGCCAAGGCA+CGG | 0.473002 | 4.2:-38951097 | MS.gene96102:CDS |
| TGATCGGGACCGTGGGGCTG+AGG | 0.474950 | 4.2:-38951048 | MS.gene96102:CDS |
| AACCAACTGTCATACAGCTT+AGG | 0.477320 | 4.2:-38949995 | MS.gene96102:CDS |
| TGCCACACTGGCTGCTGCCA+AGG | 0.487318 | 4.2:-38951102 | MS.gene96102:CDS |
| TCCAGATTCAGGTTTAATCA+TGG | 0.488374 | 4.2:+38950998 | None:intergenic |
| TGCTGCTTCGCATGCTGCTG+CGG | 0.496656 | 4.2:-38951939 | MS.gene96102:CDS |
| AGGAGTTGAATCACCTGATC+GGG | 0.508379 | 4.2:-38951063 | MS.gene96102:CDS |
| AAGATATTTGTTTCCCACTA+GGG | 0.508709 | 4.2:+38951021 | None:intergenic |
| ACCAACTGTCATACAGCTTA+GGG | 0.516291 | 4.2:-38949994 | MS.gene96102:CDS |
| GAACTGGTGGTTTCCAGCCA+CGG | 0.524769 | 4.2:+38950090 | None:intergenic |
| TATCAATAGTGTCCCAAAGA+AGG | 0.529780 | 4.2:-38950696 | MS.gene96102:intron |
| GTACAAATGGGAAGAGTACC+AGG | 0.531728 | 4.2:-38951899 | MS.gene96102:CDS |
| AATCACCTGATCGGGACCGT+GGG | 0.533321 | 4.2:-38951055 | MS.gene96102:CDS |
| GGGGCTGAGGCTACCCCTAG+TGG | 0.534590 | 4.2:-38951035 | MS.gene96102:CDS |
| GAAGATATTTGTTTCCCACT+AGG | 0.541129 | 4.2:+38951020 | None:intergenic |
| GGATTTGTTGATGATAGGAC+AGG | 0.545307 | 4.2:-38951869 | MS.gene96102:CDS |
| GCCCTAAGCTGTATGACAGT+TGG | 0.553062 | 4.2:+38949993 | None:intergenic |
| TGATTTACATGGGCAGTTTG+GGG | 0.553499 | 4.2:-38949952 | MS.gene96102:CDS |
| TGCTGAAGATCTTGCTGCTG+CGG | 0.557465 | 4.2:-38951972 | MS.gene96102:CDS |
| CAAGATCTTCAGCAACAAGC+AGG | 0.557929 | 4.2:+38951981 | None:intergenic |
| ATGTCCGACGTGGCTGCTGA+TGG | 0.559163 | 4.2:-38951839 | MS.gene96102:CDS |
| TGCCTTGGCAGCAGCCAGTG+TGG | 0.565287 | 4.2:+38951100 | None:intergenic |
| GCTGCGTCTGATGTACAAAT+GGG | 0.568768 | 4.2:-38951911 | MS.gene96102:CDS |
| GTTTGAAAATGAAGGCAGAC+GGG | 0.571368 | 4.2:-38950780 | MS.gene96102:CDS |
| TGGTGGAGCATTAGGTGGCA+TGG | 0.578886 | 4.2:-38950825 | MS.gene96102:CDS |
| TATACATGTCACCATTTACA+GGG | 0.579513 | 4.2:+38951786 | None:intergenic |
| GAGGAGTTGAATCACCTGAT+CGG | 0.581652 | 4.2:-38951064 | MS.gene96102:CDS |
| TCAACAAATCCATATCGTCC+TGG | 0.583635 | 4.2:+38951881 | None:intergenic |
| CTGCTAGAAAGTTATTAGAT+CGG | 0.583835 | 4.2:-38950727 | MS.gene96102:CDS |
| GGGCTGAGGCTACCCCTAGT+GGG | 0.585238 | 4.2:-38951034 | MS.gene96102:CDS |
| TCAGCAGCCACGTCGGACAT+TGG | 0.587242 | 4.2:+38951842 | None:intergenic |
| AAATATTTGGTGATTTACAT+GGG | 0.589386 | 4.2:-38949962 | MS.gene96102:CDS |
| GCTGGAAACCACCAGTTCGA+CGG | 0.590734 | 4.2:-38950085 | MS.gene96102:CDS |
| TAGGGGTAGCCTCAGCCCCA+CGG | 0.594389 | 4.2:+38951039 | None:intergenic |
| GAATCACCTGATCGGGACCG+TGG | 0.597024 | 4.2:-38951056 | MS.gene96102:CDS |
| AGTTTGAAAATGAAGGCAGA+CGG | 0.607904 | 4.2:-38950781 | MS.gene96102:CDS |
| GTTATTGCCGCAGAGACTGG+TGG | 0.610143 | 4.2:-38950842 | MS.gene96102:CDS |
| TATGGTTCACCATCAACTGC+CGG | 0.615823 | 4.2:-38949906 | MS.gene96102:CDS |
| TGAAGCTATCAGTGCCACAC+TGG | 0.621819 | 4.2:-38951114 | MS.gene96102:CDS |
| AGATATTTGTTTCCCACTAG+GGG | 0.622612 | 4.2:+38951022 | None:intergenic |
| ATACCTAGACCCCTGAAGCA+AGG | 0.626170 | 4.2:+38951742 | None:intergenic |
| AGGAACTTACGCTATATCAC+CGG | 0.628831 | 4.2:+38949887 | None:intergenic |
| GAGACTGGTGGAGCATTAGG+TGG | 0.638450 | 4.2:-38950830 | MS.gene96102:CDS |
| GTGAACCATACTCGTCAAAG+AGG | 0.650621 | 4.2:+38949919 | None:intergenic |
| TTGAACAGGAGAACTAGCAA+AGG | 0.651766 | 4.2:-38951173 | MS.gene96102:intron |
| ATGATTAAACCTGAATCTGG+AGG | 0.652183 | 4.2:-38950996 | MS.gene96102:CDS |
| TCTGGAGGCCCAAATTCTGG+TGG | 0.658527 | 4.2:-38950981 | MS.gene96102:CDS |
| TGCACCATCAGCAGCCACGT+CGG | 0.664420 | 4.2:+38951835 | None:intergenic |
| AAGGCACGGCAAGAGAATGG+AGG | 0.674733 | 4.2:-38951083 | MS.gene96102:CDS |
| ATCACCTGATCGGGACCGTG+GGG | 0.676953 | 4.2:-38951054 | MS.gene96102:CDS |
| ACTGGTGGTTTCCAGCCACG+GGG | 0.683656 | 4.2:+38950092 | None:intergenic |
| TACATGTCACCATTTACAGG+GGG | 0.712753 | 4.2:+38951788 | None:intergenic |
| AGGACAACCAATGTCCGACG+TGG | 0.725865 | 4.2:-38951849 | MS.gene96102:CDS |
| ATCTTTGTGATAGTGCAGAG+AGG | 0.731261 | 4.2:-38950031 | MS.gene96102:CDS |
| ATACATGTCACCATTTACAG+GGG | 0.733248 | 4.2:+38951787 | None:intergenic |
| GCACACCTCTTAAAACCCCG+TGG | 0.733416 | 4.2:-38950107 | MS.gene96102:CDS |
| TAATGCTCCACCAGTCTCTG+CGG | 0.733520 | 4.2:+38950835 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GATCAAAATTAATTTCTATT+AGG | - | chr4.2:38951399-38951418 | MS.gene96102:intron | 15.0% |
| !!! | AAAGTTTTTCATATAAATGA+TGG | + | chr4.2:38950703-38950722 | None:intergenic | 15.0% |
| !!! | AAATCACCAAATATTTTAAT+TGG | + | chr4.2:38951928-38951947 | None:intergenic | 15.0% |
| !!! | TAGTAAATTTTGATTACTAA+GGG | - | chr4.2:38950963-38950982 | MS.gene96102:CDS | 15.0% |
| !! | AAAAAAGGAAAAATCTATTG+GGG | + | chr4.2:38950316-38950335 | None:intergenic | 20.0% |
| !! | CAAAAAAGGAAAAATCTATT+GGG | + | chr4.2:38950317-38950336 | None:intergenic | 20.0% |
| !! | TAGTGAGATAATAAAAACTA+GGG | + | chr4.2:38950649-38950668 | None:intergenic | 20.0% |
| !! | TTATATGAAAAACTTTGAAC+AGG | - | chr4.2:38950707-38950726 | MS.gene96102:CDS | 20.0% |
| !! | TTCATTTAATAGTTAAGCAA+TGG | - | chr4.2:38951436-38951455 | MS.gene96102:intron | 20.0% |
| !! | TTTGACATTTAATCTATGAT+GGG | - | chr4.2:38950546-38950565 | MS.gene96102:intron | 20.0% |
| !!! | AAAATATTTGGTGATTTACA+TGG | - | chr4.2:38951931-38951950 | MS.gene96102:CDS | 20.0% |
| !!! | AAATATTTGGTGATTTACAT+GGG | - | chr4.2:38951932-38951951 | MS.gene96102:CDS | 20.0% |
| !!! | AGTGTCATTTAAATATCTAT+TGG | - | chr4.2:38950604-38950623 | MS.gene96102:intron | 20.0% |
| !!! | GTAGTAAATTTTGATTACTA+AGG | - | chr4.2:38950962-38950981 | MS.gene96102:CDS | 20.0% |
| !!! | TAGTTTTTATTATCTCACTA+GGG | - | chr4.2:38950649-38950668 | MS.gene96102:intron | 20.0% |
| !!! | TTTTGACATTTAATCTATGA+TGG | - | chr4.2:38950545-38950564 | MS.gene96102:intron | 20.0% |
| ! | AAAAAGGAAAAATCTATTGG+GGG | + | chr4.2:38950315-38950334 | None:intergenic | 25.0% |
| ! | AATGATAAACACTATTAGAG+AGG | + | chr4.2:38951339-38951358 | None:intergenic | 25.0% |
| ! | ATAATGTGAAAACACATGAT+TGG | - | chr4.2:38951374-38951393 | MS.gene96102:intron | 25.0% |
| ! | ATGATAAACACTATTAGAGA+GGG | + | chr4.2:38951338-38951357 | None:intergenic | 25.0% |
| ! | ATTGATCAGTTTGAAAATGA+AGG | - | chr4.2:38951106-38951125 | MS.gene96102:CDS | 25.0% |
| ! | CTAGTGAGATAATAAAAACT+AGG | + | chr4.2:38950650-38950669 | None:intergenic | 25.0% |
| ! | GCAAAAAAGGAAAAATCTAT+TGG | + | chr4.2:38950318-38950337 | None:intergenic | 25.0% |
| ! | TAATGTGAAAACACATGATT+GGG | - | chr4.2:38951375-38951394 | MS.gene96102:intron | 25.0% |
| ! | TACACTTATAGTTGCAAAAA+AGG | + | chr4.2:38950331-38950350 | None:intergenic | 25.0% |
| ! | TCTTCTATAAACTTGACAAT+AGG | - | chr4.2:38950466-38950485 | MS.gene96102:intron | 25.0% |
| ! | TTTATTGAATTCATCAAGCT+TGG | - | chr4.2:38951705-38951724 | MS.gene96102:intron | 25.0% |
| !! | AAATTTTGTGTGAAGTTCAA+AGG | + | chr4.2:38950439-38950458 | None:intergenic | 25.0% |
| !! | AGTTTTTATTATCTCACTAG+GGG | - | chr4.2:38950650-38950669 | MS.gene96102:intron | 25.0% |
| !! | ATATTAAAACTTTTCCTCTC+TGG | - | chr4.2:38950675-38950694 | MS.gene96102:intron | 25.0% |
| !! | ATTTAAATATCTATTGGCTG+AGG | - | chr4.2:38950610-38950629 | MS.gene96102:intron | 25.0% |
| !! | TATTCAAGTACATTTTTGTC+TGG | - | chr4.2:38951014-38951033 | MS.gene96102:CDS | 25.0% |
| !! | TTTAAATATCTATTGGCTGA+GGG | - | chr4.2:38950611-38950630 | MS.gene96102:intron | 25.0% |
| !!! | AGTGTGATTTTTGAAATTAG+AGG | - | chr4.2:38950574-38950593 | MS.gene96102:intron | 25.0% |
| !!! | CTAGTTTTTATTATCTCACT+AGG | - | chr4.2:38950648-38950667 | MS.gene96102:intron | 25.0% |
| AAGATATTTGTTTCCCACTA+GGG | + | chr4.2:38950876-38950895 | None:intergenic | 30.0% | |
| AATGCTGACATTTCCTTTAA+TGG | - | chr4.2:38951504-38951523 | MS.gene96102:intron | 30.0% | |
| AGAGACAAATATACCTTCTT+TGG | + | chr4.2:38951214-38951233 | None:intergenic | 30.0% | |
| AGGTATGAAAAACTCAACAT+CGG | + | chr4.2:38951657-38951676 | None:intergenic | 30.0% | |
| AGTTTCTTAACCTTCTATGT+AGG | - | chr4.2:38951759-38951778 | MS.gene96102:CDS | 30.0% | |
| ATCAGATGCATTATTCTGAT+TGG | - | chr4.2:38951459-38951478 | MS.gene96102:intron | 30.0% | |
| ATGTCAAAAGAAAACCACTT+TGG | + | chr4.2:38950534-38950553 | None:intergenic | 30.0% | |
| ATTTAAGTATCTCTCTCTAG+TGG | + | chr4.2:38950205-38950224 | None:intergenic | 30.0% | |
| CTGCTAGAAAGTTATTAGAT+CGG | - | chr4.2:38951167-38951186 | MS.gene96102:CDS | 30.0% | |
| GAAATAAATATGCTCCAAAG+TGG | - | chr4.2:38950517-38950536 | MS.gene96102:intron | 30.0% | |
| GAGAAGTGATTCAACAAAAT+AGG | + | chr4.2:38951677-38951696 | None:intergenic | 30.0% | |
| GAGACAAATATACCTTCTTT+GGG | + | chr4.2:38951213-38951232 | None:intergenic | 30.0% | |
| TATACATGTCACCATTTACA+GGG | + | chr4.2:38950111-38950130 | None:intergenic | 30.0% | |
| ! | ACATTTAATCTATGATGGGA+GGG | - | chr4.2:38950550-38950569 | MS.gene96102:intron | 30.0% |
| ! | AGGGCACCAATTAAAATATT+TGG | - | chr4.2:38951919-38951938 | MS.gene96102:CDS | 30.0% |
| ! | TCTAGGTATGATAGGTTTTA+CGG | - | chr4.2:38950166-38950185 | MS.gene96102:intron | 30.0% |
| !! | GATATGGATTTGTTGATGAT+AGG | - | chr4.2:38950020-38950039 | MS.gene96102:CDS | 30.0% |
| AACTTACTATTGAGTGCAGA+GGG | - | chr4.2:38951241-38951260 | MS.gene96102:intron | 35.0% | |
| AAGTTCAAAGGCCAATTAGT+AGG | + | chr4.2:38950427-38950446 | None:intergenic | 35.0% | |
| ACATCACATCTTTCTGATGA+TGG | - | chr4.2:38951599-38951618 | MS.gene96102:intron | 35.0% | |
| AGATATTTGTTTCCCACTAG+GGG | + | chr4.2:38950875-38950894 | None:intergenic | 35.0% | |
| AGTTCAAAGGCCAATTAGTA+GGG | + | chr4.2:38950426-38950445 | None:intergenic | 35.0% | |
| AGTTTGAAAATGAAGGCAGA+CGG | - | chr4.2:38951113-38951132 | MS.gene96102:CDS | 35.0% | |
| ATACATGTCACCATTTACAG+GGG | + | chr4.2:38950110-38950129 | None:intergenic | 35.0% | |
| ATGATTAAACCTGAATCTGG+AGG | - | chr4.2:38950898-38950917 | MS.gene96102:intron | 35.0% | |
| CACATTCCATCTTACAACTA+GGG | + | chr4.2:38950263-38950282 | None:intergenic | 35.0% | |
| CATCACATCTTTCTGATGAT+GGG | - | chr4.2:38951600-38951619 | MS.gene96102:intron | 35.0% | |
| GAAGATATTTGTTTCCCACT+AGG | + | chr4.2:38950877-38950896 | None:intergenic | 35.0% | |
| GTATACATGTCACCATTTAC+AGG | + | chr4.2:38950112-38950131 | None:intergenic | 35.0% | |
| TAACTTACTATTGAGTGCAG+AGG | - | chr4.2:38951240-38951259 | MS.gene96102:intron | 35.0% | |
| TATCAATAGTGTCCCAAAGA+AGG | - | chr4.2:38951198-38951217 | MS.gene96102:intron | 35.0% | |
| TCCATGATTAAACCTGAATC+TGG | - | chr4.2:38950895-38950914 | MS.gene96102:intron | 35.0% | |
| TGTAGTAGAACGACAACAAA+AGG | + | chr4.2:38951582-38951601 | None:intergenic | 35.0% | |
| ! | GACATTTAATCTATGATGGG+AGG | - | chr4.2:38950549-38950568 | MS.gene96102:intron | 35.0% |
| ! | TCCAGATTCAGGTTTAATCA+TGG | + | chr4.2:38950899-38950918 | None:intergenic | 35.0% |
| !! | TGGTGGAAAATGTTTTCAAG+TGG | - | chr4.2:38951277-38951296 | MS.gene96102:intron | 35.0% |
| !! | TTTTGTCTGGAATGTTTCTC+AGG | - | chr4.2:38951027-38951046 | MS.gene96102:CDS | 35.0% |
| AACCAACTGTCATACAGCTT+AGG | - | chr4.2:38951899-38951918 | MS.gene96102:CDS | 40.0% | |
| ACCAACTGTCATACAGCTTA+GGG | - | chr4.2:38951900-38951919 | MS.gene96102:CDS | 40.0% | |
| ACTGAAAATGCCTTGCTTCA+GGG | - | chr4.2:38950142-38950161 | MS.gene96102:intron | 40.0% | |
| ATGAAAACCCCCCTACTAAT+TGG | - | chr4.2:38950413-38950432 | MS.gene96102:intron | 40.0% | |
| GCACATTCCATCTTACAACT+AGG | + | chr4.2:38950264-38950283 | None:intergenic | 40.0% | |
| GTAGAACGACAACAAAAGGA+AGG | + | chr4.2:38951578-38951597 | None:intergenic | 40.0% | |
| GTGATTTACATGGGCAGTTT+GGG | - | chr4.2:38951941-38951960 | MS.gene96102:CDS | 40.0% | |
| GTTCAAAGGCCAATTAGTAG+GGG | + | chr4.2:38950425-38950444 | None:intergenic | 40.0% | |
| GTTTGAAAATGAAGGCAGAC+GGG | - | chr4.2:38951114-38951133 | MS.gene96102:CDS | 40.0% | |
| TACATGTCACCATTTACAGG+GGG | + | chr4.2:38950109-38950128 | None:intergenic | 40.0% | |
| TAGCAAAGGAGTTGAGTATC+TGG | - | chr4.2:38950735-38950754 | MS.gene96102:CDS | 40.0% | |
| TCAACAAATCCATATCGTCC+TGG | + | chr4.2:38950016-38950035 | None:intergenic | 40.0% | |
| TCCATCTTACAACTAGGGAA+AGG | + | chr4.2:38950258-38950277 | None:intergenic | 40.0% | |
| TCCTTTAATGGCTCAGCAAT+GGG | - | chr4.2:38951516-38951535 | MS.gene96102:intron | 40.0% | |
| TCCTTTCCCTAGTTGTAAGA+TGG | - | chr4.2:38950254-38950273 | MS.gene96102:intron | 40.0% | |
| TGATTTACATGGGCAGTTTG+GGG | - | chr4.2:38951942-38951961 | MS.gene96102:CDS | 40.0% | |
| TGTGCTATGACCTACATAGA+AGG | + | chr4.2:38951772-38951791 | None:intergenic | 40.0% | |
| TTCAAAGGCCAATTAGTAGG+GGG | + | chr4.2:38950424-38950443 | None:intergenic | 40.0% | |
| TTCCTTTAATGGCTCAGCAA+TGG | - | chr4.2:38951515-38951534 | MS.gene96102:intron | 40.0% | |
| TTGAACAGGAGAACTAGCAA+AGG | - | chr4.2:38950721-38950740 | MS.gene96102:CDS | 40.0% | |
| ! | ATCTTTGTGATAGTGCAGAG+AGG | - | chr4.2:38951863-38951882 | MS.gene96102:CDS | 40.0% |
| ! | TATAAATGATGGAGCCAGAG+AGG | + | chr4.2:38950692-38950711 | None:intergenic | 40.0% |
| !! | GGATTTGTTGATGATAGGAC+AGG | - | chr4.2:38950025-38950044 | MS.gene96102:CDS | 40.0% |
| AAGAAAAACTGCCGTCGAAC+TGG | + | chr4.2:38951823-38951842 | None:intergenic | 45.0% | |
| ACCCATTGCTGAGCCATTAA+AGG | + | chr4.2:38951520-38951539 | None:intergenic | 45.0% | |
| AGCCTGATTCCACCAGAATT+TGG | + | chr4.2:38950925-38950944 | None:intergenic | 45.0% | |
| AGCTGCGTCTGATGTACAAA+TGG | - | chr4.2:38949982-38950001 | MS.gene96102:CDS | 45.0% | |
| AGGAGTTGAATCACCTGATC+GGG | - | chr4.2:38950831-38950850 | MS.gene96102:CDS | 45.0% | |
| AGGGTGCATATAACTGATGG+TGG | - | chr4.2:38951260-38951279 | MS.gene96102:intron | 45.0% | |
| CAAGATCTTCAGCAACAAGC+AGG | + | chr4.2:38949916-38949935 | None:intergenic | 45.0% | |
| CACTGAAAATGCCTTGCTTC+AGG | - | chr4.2:38950141-38950160 | MS.gene96102:intron | 45.0% | |
| CAGATTCAGGACAACACACT+CGG | + | chr4.2:38951632-38951651 | None:intergenic | 45.0% | |
| CTGAAAATGCCTTGCTTCAG+GGG | - | chr4.2:38950143-38950162 | MS.gene96102:intron | 45.0% | |
| GAGGAGTTGAATCACCTGAT+CGG | - | chr4.2:38950830-38950849 | MS.gene96102:CDS | 45.0% | |
| GCCTGATTCCACCAGAATTT+GGG | + | chr4.2:38950924-38950943 | None:intergenic | 45.0% | |
| GCTGCGTCTGATGTACAAAT+GGG | - | chr4.2:38949983-38950002 | MS.gene96102:CDS | 45.0% | |
| GGTGATTTACATGGGCAGTT+TGG | - | chr4.2:38951940-38951959 | MS.gene96102:CDS | 45.0% | |
| GTGAACCATACTCGTCAAAG+AGG | + | chr4.2:38951978-38951997 | None:intergenic | 45.0% | |
| TATGGTTCACCATCAACTGC+CGG | - | chr4.2:38951988-38952007 | MS.gene96102:CDS | 45.0% | |
| TCAAAGGCCAATTAGTAGGG+GGG | + | chr4.2:38950423-38950442 | None:intergenic | 45.0% | |
| TTCAGGGGTCTAGGTATGAT+AGG | - | chr4.2:38950158-38950177 | MS.gene96102:intron | 45.0% | |
| ! | AGTTCGACGGCAGTTTTTCT+TGG | - | chr4.2:38951822-38951841 | MS.gene96102:CDS | 45.0% |
| ! | CAGAGGGTGCATATAACTGA+TGG | - | chr4.2:38951257-38951276 | MS.gene96102:intron | 45.0% |
| ! | TGTCTGGAATGTTTCTCAGG+TGG | - | chr4.2:38951030-38951049 | MS.gene96102:CDS | 45.0% |
| !! | GCTGATGGTGCAGTTGTTTT+GGG | - | chr4.2:38950070-38950089 | MS.gene96102:CDS | 45.0% |
| !! | GTACAAATGGGAAGAGTACC+AGG | - | chr4.2:38949995-38950014 | MS.gene96102:CDS | 45.0% |
| !! | TGCTGATGGTGCAGTTGTTT+TGG | - | chr4.2:38950069-38950088 | MS.gene96102:CDS | 45.0% |
| AAAAACTGCCGTCGAACTGG+TGG | + | chr4.2:38951820-38951839 | None:intergenic | 50.0% | |
| AAGGCAGACGGGTCAGTTAT+GGG | - | chr4.2:38951125-38951144 | MS.gene96102:CDS | 50.0% | |
| ATACCTAGACCCCTGAAGCA+AGG | + | chr4.2:38950155-38950174 | None:intergenic | 50.0% | |
| ATGCGCCTCTTTGACGAGTA+TGG | - | chr4.2:38951970-38951989 | MS.gene96102:CDS | 50.0% | |
| CGAGTGTGTTGTCCTGAATC+TGG | - | chr4.2:38951630-38951649 | MS.gene96102:intron | 50.0% | |
| CTAGCAGCAGTTGCACTTTC+TGG | + | chr4.2:38951154-38951173 | None:intergenic | 50.0% | |
| CTCAACATCGGACCAGATTC+AGG | + | chr4.2:38951645-38951664 | None:intergenic | 50.0% | |
| GAATCTGGAGGCCCAAATTC+TGG | - | chr4.2:38950910-38950929 | MS.gene96102:intron | 50.0% | |
| GAATTTGGGCCTCCAGATTC+AGG | + | chr4.2:38950910-38950929 | None:intergenic | 50.0% | |
| GAGCATTAGGTGGCATGGTT+AGG | - | chr4.2:38951074-38951093 | MS.gene96102:CDS | 50.0% | |
| GCCCAAATTCTGGTGGAATC+AGG | - | chr4.2:38950920-38950939 | MS.gene96102:intron | 50.0% | |
| GCCCTAAGCTGTATGACAGT+TGG | + | chr4.2:38951904-38951923 | None:intergenic | 50.0% | |
| GCTATATCACCGGCAGTTGA+TGG | + | chr4.2:38952000-38952019 | None:intergenic | 50.0% | |
| TAATGCTCCACCAGTCTCTG+CGG | + | chr4.2:38951062-38951081 | None:intergenic | 50.0% | |
| TAATGGCTCAGCAATGGGTC+AGG | - | chr4.2:38951521-38951540 | MS.gene96102:intron | 50.0% | |
| TGAAGCTATCAGTGCCACAC+TGG | - | chr4.2:38950780-38950799 | MS.gene96102:CDS | 50.0% | |
| TGCTGAAGATCTTGCTGCTG+CGG | - | chr4.2:38949922-38949941 | MS.gene96102:CDS | 50.0% | |
| !! | CTGTATGACAGTTGGTTCGC+TGG | + | chr4.2:38951896-38951915 | None:intergenic | 50.0% |
| !! | GGAAGAGTACCAGGACGATA+TGG | - | chr4.2:38950004-38950023 | MS.gene96102:CDS | 50.0% |
| AACTGGTGGTTTCCAGCCAC+GGG | + | chr4.2:38951806-38951825 | None:intergenic | 55.0% | |
| AAGGCACGGCAAGAGAATGG+AGG | - | chr4.2:38950811-38950830 | MS.gene96102:CDS | 55.0% | |
| AATCACCTGATCGGGACCGT+GGG | - | chr4.2:38950839-38950858 | MS.gene96102:CDS | 55.0% | |
| ACCTCTTAAAACCCCGTGGC+TGG | - | chr4.2:38951791-38951810 | MS.gene96102:CDS | 55.0% | |
| AGGACAACCAATGTCCGACG+TGG | - | chr4.2:38950045-38950064 | MS.gene96102:CDS | 55.0% | |
| ATGCCTTGCTTCAGGGGTCT+AGG | - | chr4.2:38950149-38950168 | MS.gene96102:intron | 55.0% | |
| CCAGTTGCTCCCCCTGTAAA+TGG | - | chr4.2:38950097-38950116 | MS.gene96102:CDS | 55.0% | |
| CCATTTACAGGGGGAGCAAC+TGG | + | chr4.2:38950100-38950119 | None:intergenic | 55.0% | |
| GAACTGGTGGTTTCCAGCCA+CGG | + | chr4.2:38951807-38951826 | None:intergenic | 55.0% | |
| GAAGGCAGACGGGTCAGTTA+TGG | - | chr4.2:38951124-38951143 | MS.gene96102:CDS | 55.0% | |
| GCACACCTCTTAAAACCCCG+TGG | - | chr4.2:38951787-38951806 | MS.gene96102:CDS | 55.0% | |
| GCTGGAAACCACCAGTTCGA+CGG | - | chr4.2:38951809-38951828 | MS.gene96102:CDS | 55.0% | |
| GTGGTTATTGCCGCAGAGAC+TGG | - | chr4.2:38951049-38951068 | MS.gene96102:CDS | 55.0% | |
| GTTATTGCCGCAGAGACTGG+TGG | - | chr4.2:38951052-38951071 | MS.gene96102:CDS | 55.0% | |
| TCCATTCTCTTGCCGTGCCT+TGG | + | chr4.2:38950812-38950831 | None:intergenic | 55.0% | |
| TCTGGAGGCCCAAATTCTGG+TGG | - | chr4.2:38950913-38950932 | MS.gene96102:intron | 55.0% | |
| ! | GAGACTGGTGGAGCATTAGG+TGG | - | chr4.2:38951064-38951083 | MS.gene96102:CDS | 55.0% |
| ! | GCAGAGACTGGTGGAGCATT+AGG | - | chr4.2:38951061-38951080 | MS.gene96102:CDS | 55.0% |
| ! | TGGTGGAGCATTAGGTGGCA+TGG | - | chr4.2:38951069-38951088 | MS.gene96102:CDS | 55.0% |
| !!! | TCCAGCCACGGGGTTTTAAG+AGG | + | chr4.2:38951795-38951814 | None:intergenic | 55.0% |
| ACTGGTGGTTTCCAGCCACG+GGG | + | chr4.2:38951805-38951824 | None:intergenic | 60.0% | |
| ATCACCTGATCGGGACCGTG+GGG | - | chr4.2:38950840-38950859 | MS.gene96102:CDS | 60.0% | |
| ATGTCCGACGTGGCTGCTGA+TGG | - | chr4.2:38950055-38950074 | MS.gene96102:CDS | 60.0% | |
| GAATCACCTGATCGGGACCG+TGG | - | chr4.2:38950838-38950857 | MS.gene96102:CDS | 60.0% | |
| GCCAAGGCACGGCAAGAGAA+TGG | - | chr4.2:38950808-38950827 | MS.gene96102:CDS | 60.0% | |
| TCAGCAGCCACGTCGGACAT+TGG | + | chr4.2:38950055-38950074 | None:intergenic | 60.0% | |
| TGCACCATCAGCAGCCACGT+CGG | + | chr4.2:38950062-38950081 | None:intergenic | 60.0% | |
| ! | TGCTGCTTCGCATGCTGCTG+CGG | - | chr4.2:38949955-38949974 | MS.gene96102:CDS | 60.0% |
| GGGCTGAGGCTACCCCTAGT+GGG | - | chr4.2:38950860-38950879 | MS.gene96102:intron | 65.0% | |
| TAGGGGTAGCCTCAGCCCCA+CGG | + | chr4.2:38950858-38950877 | None:intergenic | 65.0% | |
| TGCCTTGGCAGCAGCCAGTG+TGG | + | chr4.2:38950797-38950816 | None:intergenic | 65.0% | |
| ! | CACTGGCTGCTGCCAAGGCA+CGG | - | chr4.2:38950797-38950816 | MS.gene96102:CDS | 65.0% |
| ! | TGCCACACTGGCTGCTGCCA+AGG | - | chr4.2:38950792-38950811 | MS.gene96102:CDS | 65.0% |
| GGGGCTGAGGCTACCCCTAG+TGG | - | chr4.2:38950859-38950878 | MS.gene96102:intron | 70.0% | |
| TCAGCCCCACGGTCCCGATC+AGG | + | chr4.2:38950847-38950866 | None:intergenic | 70.0% | |
| TGATCGGGACCGTGGGGCTG+AGG | - | chr4.2:38950846-38950865 | MS.gene96102:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 38949897 | 38952019 | 38949897 | ID=MS.gene96102 |
| chr4.2 | mRNA | 38949897 | 38952019 | 38949897 | ID=MS.gene96102.t1;Parent=MS.gene96102 |
| chr4.2 | exon | 38951746 | 38952019 | 38951746 | ID=MS.gene96102.t1.exon1;Parent=MS.gene96102.t1 |
| chr4.2 | CDS | 38951746 | 38952019 | 38951746 | ID=cds.MS.gene96102.t1;Parent=MS.gene96102.t1 |
| chr4.2 | exon | 38950959 | 38951187 | 38950959 | ID=MS.gene96102.t1.exon2;Parent=MS.gene96102.t1 |
| chr4.2 | CDS | 38950959 | 38951187 | 38950959 | ID=cds.MS.gene96102.t1;Parent=MS.gene96102.t1 |
| chr4.2 | exon | 38950697 | 38950867 | 38950697 | ID=MS.gene96102.t1.exon3;Parent=MS.gene96102.t1 |
| chr4.2 | CDS | 38950697 | 38950867 | 38950697 | ID=cds.MS.gene96102.t1;Parent=MS.gene96102.t1 |
| chr4.2 | exon | 38949897 | 38950135 | 38949897 | ID=MS.gene96102.t1.exon4;Parent=MS.gene96102.t1 |
| chr4.2 | CDS | 38949897 | 38950135 | 38949897 | ID=cds.MS.gene96102.t1;Parent=MS.gene96102.t1 |
| Gene Sequence |
| Protein sequence |
