Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97823.t1 | XP_003626244.1 | 91.5 | 319 | 27 | 0 | 1 | 319 | 1 | 319 | 7.70E-176 | 626.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97823.t1 | I6YGS0 | 35.0 | 326 | 180 | 8 | 7 | 316 | 7 | 316 | 6.0e-52 | 206.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97823.t1 | A2Q321 | 91.5 | 319 | 27 | 0 | 1 | 319 | 1 | 319 | 5.5e-176 | 626.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050380 | MS.gene97823 | 0.809557 | 1.78E-50 | -1.69E-46 |
| MS.gene054290 | MS.gene97823 | 0.806084 | 9.77E-50 | -1.69E-46 |
| MS.gene054742 | MS.gene97823 | 0.806964 | 6.37E-50 | -1.69E-46 |
| MS.gene056899 | MS.gene97823 | 0.800065 | 1.72E-48 | -1.69E-46 |
| MS.gene058177 | MS.gene97823 | 0.824427 | 8.12E-54 | -1.69E-46 |
| MS.gene058218 | MS.gene97823 | 0.805795 | 1.12E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene071504 | MS.gene97823 | PPI |
| MS.gene012063 | MS.gene97823 | PPI |
| MS.gene071502 | MS.gene97823 | PPI |
| MS.gene066360 | MS.gene97823 | PPI |
| MS.gene89620 | MS.gene97823 | PPI |
| MS.gene07001 | MS.gene97823 | PPI |
| MS.gene066361 | MS.gene97823 | PPI |
| MS.gene035369 | MS.gene97823 | PPI |
| MS.gene76453 | MS.gene97823 | PPI |
| MS.gene025707 | MS.gene97823 | PPI |
| MS.gene035373 | MS.gene97823 | PPI |
| MS.gene071500 | MS.gene97823 | PPI |
| MS.gene22955 | MS.gene97823 | PPI |
| MS.gene035371 | MS.gene97823 | PPI |
| MS.gene035367 | MS.gene97823 | PPI |
| MS.gene77823 | MS.gene97823 | PPI |
| MS.gene041604 | MS.gene97823 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97823.t1 | MTR_7g113030 | 91.536 | 319 | 27 | 0 | 1 | 319 | 1 | 319 | 0.0 | 618 |
| MS.gene97823.t1 | MTR_7g113050 | 91.223 | 319 | 28 | 0 | 1 | 319 | 1 | 319 | 0.0 | 615 |
| MS.gene97823.t1 | MTR_7g112615 | 90.282 | 319 | 31 | 0 | 1 | 319 | 1 | 319 | 0.0 | 605 |
| MS.gene97823.t1 | MTR_7g112620 | 87.774 | 319 | 39 | 0 | 1 | 319 | 1 | 319 | 0.0 | 590 |
| MS.gene97823.t1 | MTR_7g113020 | 86.520 | 319 | 43 | 0 | 1 | 319 | 1 | 319 | 0.0 | 585 |
| MS.gene97823.t1 | MTR_7g112960 | 75.701 | 321 | 74 | 2 | 1 | 319 | 1 | 319 | 0.0 | 513 |
| MS.gene97823.t1 | MTR_7g112963 | 76.324 | 321 | 72 | 2 | 1 | 319 | 1 | 319 | 0.0 | 506 |
| MS.gene97823.t1 | MTR_7g112970 | 74.922 | 319 | 77 | 2 | 1 | 319 | 1 | 316 | 0.0 | 504 |
| MS.gene97823.t1 | MTR_4g005160 | 70.898 | 323 | 89 | 3 | 1 | 319 | 1 | 322 | 5.10e-177 | 493 |
| MS.gene97823.t1 | MTR_7g113050 | 90.336 | 238 | 23 | 0 | 1 | 238 | 1 | 238 | 3.11e-164 | 457 |
| MS.gene97823.t1 | MTR_7g112615 | 89.496 | 238 | 25 | 0 | 1 | 238 | 1 | 238 | 1.87e-162 | 452 |
| MS.gene97823.t1 | MTR_7g113010 | 72.792 | 283 | 73 | 2 | 1 | 281 | 1 | 281 | 4.42e-151 | 436 |
| MS.gene97823.t1 | MTR_4g120240 | 60.125 | 321 | 124 | 3 | 1 | 319 | 37 | 355 | 4.47e-140 | 400 |
| MS.gene97823.t1 | MTR_7g108825 | 61.129 | 319 | 122 | 2 | 1 | 319 | 1 | 317 | 3.01e-139 | 397 |
| MS.gene97823.t1 | MTR_8g076680 | 47.649 | 319 | 163 | 3 | 1 | 319 | 3 | 317 | 5.66e-105 | 310 |
| MS.gene97823.t1 | MTR_7g112615 | 89.308 | 159 | 17 | 0 | 1 | 159 | 1 | 159 | 2.35e-103 | 300 |
| MS.gene97823.t1 | MTR_7g108825 | 60.084 | 238 | 93 | 2 | 1 | 238 | 1 | 236 | 5.76e-97 | 286 |
| MS.gene97823.t1 | MTR_7g112910 | 59.839 | 249 | 45 | 5 | 72 | 319 | 1 | 195 | 5.69e-92 | 272 |
| MS.gene97823.t1 | MTR_1g083480 | 72.956 | 159 | 39 | 2 | 1 | 156 | 1 | 158 | 1.71e-83 | 250 |
| MS.gene97823.t1 | MTR_8g076680 | 48.739 | 238 | 120 | 2 | 1 | 238 | 3 | 238 | 5.19e-80 | 243 |
| MS.gene97823.t1 | MTR_3g024250 | 92.523 | 107 | 8 | 0 | 46 | 152 | 1 | 107 | 4.24e-68 | 209 |
| MS.gene97823.t1 | MTR_2g090240 | 35.826 | 321 | 192 | 7 | 1 | 318 | 1 | 310 | 1.65e-63 | 203 |
| MS.gene97823.t1 | MTR_4g089060 | 35.826 | 321 | 191 | 6 | 1 | 318 | 1 | 309 | 1.82e-61 | 198 |
| MS.gene97823.t1 | MTR_2g090245 | 34.579 | 321 | 196 | 7 | 1 | 318 | 1 | 310 | 2.27e-60 | 195 |
| MS.gene97823.t1 | MTR_4g089040 | 34.891 | 321 | 194 | 6 | 1 | 318 | 1 | 309 | 1.40e-58 | 191 |
| MS.gene97823.t1 | MTR_4g089060 | 33.333 | 348 | 190 | 7 | 1 | 318 | 1 | 336 | 1.98e-56 | 186 |
| MS.gene97823.t1 | MTR_4g089060 | 38.627 | 233 | 134 | 3 | 1 | 231 | 1 | 226 | 2.60e-51 | 169 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97823.t1 | AT3G05600 | 60.185 | 324 | 124 | 4 | 1 | 319 | 1 | 324 | 1.45e-146 | 416 |
| MS.gene97823.t1 | AT4G02340 | 57.053 | 319 | 134 | 3 | 1 | 319 | 1 | 316 | 1.90e-135 | 387 |
| MS.gene97823.t1 | AT2G26740 | 60.248 | 322 | 121 | 4 | 4 | 319 | 1 | 321 | 6.07e-125 | 360 |
| MS.gene97823.t1 | AT4G15960 | 52.308 | 325 | 148 | 3 | 1 | 319 | 51 | 374 | 1.92e-120 | 351 |
| MS.gene97823.t1 | AT2G26750 | 58.255 | 321 | 128 | 4 | 4 | 319 | 1 | 320 | 1.53e-119 | 347 |
| MS.gene97823.t1 | AT3G05600 | 61.728 | 243 | 88 | 4 | 1 | 238 | 1 | 243 | 3.71e-108 | 315 |
| MS.gene97823.t1 | AT4G15955 | 49.080 | 326 | 128 | 4 | 5 | 319 | 6 | 304 | 1.50e-104 | 308 |
| MS.gene97823.t1 | AT3G51000 | 45.872 | 327 | 156 | 6 | 3 | 319 | 4 | 319 | 9.68e-100 | 296 |
| MS.gene97823.t1 | AT4G15955 | 58.046 | 174 | 63 | 2 | 5 | 168 | 6 | 179 | 2.09e-68 | 212 |
| MS.gene97823.t1 | AT4G15955 | 58.182 | 165 | 59 | 2 | 5 | 159 | 6 | 170 | 3.39e-64 | 201 |
Find 88 sgRNAs with CRISPR-Local
Find 169 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACATAGGCTTTGATTCTTTC+AGG | 0.119767 | 3.4:-16957825 | None:intergenic |
| CCAATTGTCTTGTTTCTTCA+TGG | 0.206846 | 3.4:+16957555 | MS.gene97823:CDS |
| TTATTATATATGTAGATTTC+AGG | 0.260713 | 3.4:+16957926 | MS.gene97823:CDS |
| AAAATGCATATTGCTGAAAA+AGG | 0.266560 | 3.4:+16957522 | MS.gene97823:CDS |
| GTTGCACTTATAGACTTTCT+AGG | 0.271139 | 3.4:+16957732 | MS.gene97823:CDS |
| TACTCTCCCTTGGGAAATAT+TGG | 0.280214 | 3.4:-16959063 | None:intergenic |
| ACCACAGGAACCAGGCAAAA+TGG | 0.316985 | 3.4:+16958969 | MS.gene97823:intron |
| GCCCTCACAGCTCGGAAAAC+TGG | 0.342370 | 3.4:+16959036 | MS.gene97823:CDS |
| CCTAAAATCAGAACTGTTGA+TGG | 0.347446 | 3.4:+16957879 | MS.gene97823:CDS |
| TGTTTCTTGTGGCTCATGAT+TGG | 0.349713 | 3.4:+16957766 | MS.gene97823:CDS |
| ATATTTCCCAAGGGAGAGTA+TGG | 0.351665 | 3.4:+16959066 | MS.gene97823:CDS |
| GTTTCTTGTGGCTCATGATT+GGG | 0.353911 | 3.4:+16957767 | MS.gene97823:CDS |
| TTCATGGCTTCCTCGAACTC+TGG | 0.354346 | 3.4:+16957571 | MS.gene97823:CDS |
| GACAATCACTTCTTCCAGAT+TGG | 0.360761 | 3.4:-16959590 | None:intergenic |
| GATGGCATGCGTGCTGCTTA+TGG | 0.363820 | 3.4:+16957897 | MS.gene97823:CDS |
| CATGATTGGGGTGCCATCAT+TGG | 0.372270 | 3.4:+16957780 | MS.gene97823:CDS |
| CCCAAGGGAGAGTATGGAAC+TGG | 0.372941 | 3.4:+16959072 | MS.gene97823:CDS |
| GTCTCCAAAATTGAGAAAAC+AGG | 0.379912 | 3.4:+16959159 | MS.gene97823:CDS |
| GGTAAGGTGTCAGGAGTATC+CGG | 0.384128 | 3.4:-16959102 | None:intergenic |
| AGCCAAGAGGGTAAGGTGTC+AGG | 0.390169 | 3.4:-16959111 | None:intergenic |
| GAAGAAGTGATTGTCCAAAA+AGG | 0.401350 | 3.4:+16959598 | MS.gene97823:CDS |
| CTCCTGACACCTTACCCTCT+TGG | 0.407073 | 3.4:+16959109 | MS.gene97823:CDS |
| CAAAGAAGATGTGCCCAATC+TGG | 0.410756 | 3.4:+16959576 | MS.gene97823:CDS |
| ATTGAGAAAACAGGCTTCAC+TGG | 0.417402 | 3.4:+16959168 | MS.gene97823:CDS |
| GTACCTGTGAAATTCATTAC+AGG | 0.421276 | 3.4:+16959493 | MS.gene97823:CDS |
| TTACTTGTATTGCAGAAATT+GGG | 0.423076 | 3.4:+16959435 | MS.gene97823:intron |
| CATAGGCTTTGATTCTTTCA+GGG | 0.432762 | 3.4:-16957824 | None:intergenic |
| TCACCATAGCCACGGAGATC+AGG | 0.444071 | 3.4:-16957651 | None:intergenic |
| CAGCTACACAGGGTTTCATA+TGG | 0.449902 | 3.4:+16957698 | MS.gene97823:CDS |
| ACAATCACTTCTTCCAGATT+GGG | 0.454843 | 3.4:-16959589 | None:intergenic |
| CCATGAAGAAACAAGACAAT+TGG | 0.459751 | 3.4:-16957555 | None:intergenic |
| CCCAGTTCCATACTCTCCCT+TGG | 0.465033 | 3.4:-16959073 | None:intergenic |
| ATACACCTCACTAAACTTGA+AGG | 0.465604 | 3.4:+16959531 | MS.gene97823:CDS |
| TTCTGTAAGCCAAGAGGGTA+AGG | 0.483607 | 3.4:-16959118 | None:intergenic |
| GCTCCTGATCTCCGTGGCTA+TGG | 0.495716 | 3.4:+16957648 | MS.gene97823:CDS |
| CCAGTTCCATACTCTCCCTT+GGG | 0.505497 | 3.4:-16959072 | None:intergenic |
| TACACAGGGTTTCATATGGT+TGG | 0.511886 | 3.4:+16957702 | MS.gene97823:CDS |
| TCCTCGAACTCTGGTACTCA+TGG | 0.513549 | 3.4:+16957580 | MS.gene97823:CDS |
| CACAGAACAGTGGAAGTGAA+TGG | 0.515742 | 3.4:+16957495 | MS.gene97823:CDS |
| GTGTAGCTGCTTATTGAAGA+TGG | 0.516512 | 3.4:-16957684 | None:intergenic |
| TCTTCAATAAGCAGCTACAC+AGG | 0.519820 | 3.4:+16957687 | MS.gene97823:CDS |
| GGGAGCTGAGAGCTACAATC+TGG | 0.526144 | 3.4:-16957608 | None:intergenic |
| TTTAGGGTTTCTTCGGAGCA+AGG | 0.536936 | 3.4:-16957862 | None:intergenic |
| GAGCCACGGCATGGTAGCCG+AGG | 0.537610 | 3.4:-16957629 | None:intergenic |
| TTTCTTGTGGCTCATGATTG+GGG | 0.538324 | 3.4:+16957768 | MS.gene97823:CDS |
| AGGCAAAATGGAAGCTGAGA+TGG | 0.540634 | 3.4:+16958981 | MS.gene97823:CDS |
| GCAAAGGTACCAACCAATGA+TGG | 0.541082 | 3.4:-16957793 | None:intergenic |
| GCTTATTGAAGATGGAGAAT+CGG | 0.544508 | 3.4:-16957676 | None:intergenic |
| TCTCCCTTGGGAAATATTGG+AGG | 0.546141 | 3.4:-16959060 | None:intergenic |
| ATTGTAGCTCTCAGCTCCCT+CGG | 0.548619 | 3.4:+16957612 | MS.gene97823:CDS |
| CTCCCTCGGCTACCATGCCG+TGG | 0.565985 | 3.4:+16957626 | MS.gene97823:CDS |
| GAGCTGATGGCACCATGGAA+TGG | 0.569405 | 3.4:+16959457 | MS.gene97823:CDS |
| TGGTTCATACCACAGGAACC+AGG | 0.570796 | 3.4:+16958961 | MS.gene97823:intron |
| GAAGGAATATATCCATGGTG+GGG | 0.572924 | 3.4:+16959549 | MS.gene97823:CDS |
| GCCATGAGTACCAGAGTTCG+AGG | 0.573400 | 3.4:-16957581 | None:intergenic |
| ATTGGGGTGCCATCATTGGT+TGG | 0.574625 | 3.4:+16957784 | MS.gene97823:CDS |
| TTAGGGTTTCTTCGGAGCAA+GGG | 0.576719 | 3.4:-16957861 | None:intergenic |
| TGAAGGAATATATCCATGGT+GGG | 0.577926 | 3.4:+16959548 | MS.gene97823:CDS |
| TCACCTGTAATGAATTTCAC+AGG | 0.582821 | 3.4:-16959496 | None:intergenic |
| TGGTCCTCCAATATTTCCCA+AGG | 0.588717 | 3.4:+16959056 | MS.gene97823:CDS |
| AAGGAATATATCCATGGTGG+GGG | 0.588801 | 3.4:+16959550 | MS.gene97823:CDS |
| TCGTCTTCTGTAAGCCAAGA+GGG | 0.590014 | 3.4:-16959123 | None:intergenic |
| GAAGCTGAGATGGCTGAAGT+TGG | 0.590883 | 3.4:+16958991 | MS.gene97823:CDS |
| CTTCAATAAGCAGCTACACA+GGG | 0.595237 | 3.4:+16957688 | MS.gene97823:CDS |
| ATGGAATGGAGTGAAAATCA+AGG | 0.600933 | 3.4:+16959471 | MS.gene97823:CDS |
| GTATGGAACTGGGTTCGACC+CGG | 0.604103 | 3.4:+16959083 | MS.gene97823:CDS |
| GGAGATCAGGAGCCACGGCA+TGG | 0.605772 | 3.4:-16957638 | None:intergenic |
| AACTTGAAGGAATATATCCA+TGG | 0.609632 | 3.4:+16959544 | MS.gene97823:CDS |
| CCAAGGGAGAGTATGGAACT+GGG | 0.609678 | 3.4:+16959073 | MS.gene97823:CDS |
| TTGCAGAAATTGGGAGCTGA+TGG | 0.610067 | 3.4:+16959444 | MS.gene97823:intron |
| GAGAAAACAGGCTTCACTGG+AGG | 0.615767 | 3.4:+16959171 | MS.gene97823:CDS |
| AGCCACGGCATGGTAGCCGA+GGG | 0.617386 | 3.4:-16957628 | None:intergenic |
| GTAAGGTGTCAGGAGTATCC+GGG | 0.618284 | 3.4:-16959101 | None:intergenic |
| GGGAACACTGAGACAAACAT+AGG | 0.620100 | 3.4:-16957841 | None:intergenic |
| TTGAAGGAATATATCCATGG+TGG | 0.621968 | 3.4:+16959547 | MS.gene97823:CDS |
| CAACAATCAAGAAGCAGCAG+AGG | 0.622672 | 3.4:+16959633 | MS.gene97823:CDS |
| GCCACGGAGATCAGGAGCCA+CGG | 0.626919 | 3.4:-16957643 | None:intergenic |
| ATATTCCTTCAAGTTTAGTG+AGG | 0.634199 | 3.4:-16959536 | None:intergenic |
| TTTCAGGGCGAAACGTGCAA+AGG | 0.634614 | 3.4:-16957809 | None:intergenic |
| AGCTGAGAGCTACAATCTGG+TGG | 0.640204 | 3.4:-16957605 | None:intergenic |
| ATTGGGAGCTGATGGCACCA+TGG | 0.649732 | 3.4:+16959452 | MS.gene97823:CDS |
| AATCGGTGTCACCATAGCCA+CGG | 0.651627 | 3.4:-16957659 | None:intergenic |
| TGTTGATCAAGTGTTTCTTG+TGG | 0.654418 | 3.4:+16957755 | MS.gene97823:CDS |
| GTCGTCTTCTGTAAGCCAAG+AGG | 0.663533 | 3.4:-16959124 | None:intergenic |
| AGGAATAGAACACAGAACAG+TGG | 0.676997 | 3.4:+16957485 | MS.gene97823:CDS |
| GGTCCTCCAATATTTCCCAA+GGG | 0.706108 | 3.4:+16959057 | MS.gene97823:CDS |
| GAAAGTCTATAAGTGCAACA+AGG | 0.716399 | 3.4:-16957728 | None:intergenic |
| GCCGTGGCTCCTGATCTCCG+TGG | 0.726931 | 3.4:+16957642 | MS.gene97823:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAACAAAACATAAAAA+CGG | + | chr3.4:16958091-16958110 | MS.gene97823:intron | 10.0% |
| !! | GTTAAATTAAATATATTATG+TGG | - | chr3.4:16958465-16958484 | None:intergenic | 10.0% |
| !! | TTGAATATAACAATATTTAT+AGG | - | chr3.4:16959385-16959404 | None:intergenic | 10.0% |
| !! | AAAATTACAATTTATTTCCA+TGG | + | chr3.4:16958402-16958421 | MS.gene97823:intron | 15.0% |
| !! | GAAAATGTTTAATAGAATTT+AGG | + | chr3.4:16958021-16958040 | MS.gene97823:intron | 15.0% |
| !! | GAGTAATATTGAATATATTA+GGG | + | chr3.4:16958681-16958700 | MS.gene97823:intron | 15.0% |
| !! | TAATTTAGTGTTAAAATTTG+AGG | - | chr3.4:16958428-16958447 | None:intergenic | 15.0% |
| !! | TCTGATTCAAAATATTATAT+TGG | - | chr3.4:16958873-16958892 | None:intergenic | 15.0% |
| !! | TTATTATATATGTAGATTTC+AGG | + | chr3.4:16957926-16957945 | MS.gene97823:CDS | 15.0% |
| !!! | ATGGAAATAAATTGTAATTT+TGG | - | chr3.4:16958403-16958422 | None:intergenic | 15.0% |
| !!! | TATTTTAAATTTTGTGATCA+CGG | + | chr3.4:16958123-16958142 | MS.gene97823:intron | 15.0% |
| !!! | TCTATTTAATCTTTTTTTAG+TGG | + | chr3.4:16958209-16958228 | MS.gene97823:intron | 15.0% |
| !! | ATAACAATATTTATAGGTGT+CGG | - | chr3.4:16959379-16959398 | None:intergenic | 20.0% |
| !! | CGAGTAATATTGAATATATT+AGG | + | chr3.4:16958680-16958699 | MS.gene97823:intron | 20.0% |
| !! | TATTTATTCGAAAGGATTTA+TGG | + | chr3.4:16957993-16958012 | MS.gene97823:intron | 20.0% |
| !! | TTAATTTAACAGTCTAGATT+TGG | + | chr3.4:16958475-16958494 | MS.gene97823:intron | 20.0% |
| !! | TTTGGATATATTTATTCGAA+AGG | + | chr3.4:16957985-16958004 | MS.gene97823:intron | 20.0% |
| !! | TTTGTTTATGTAAAAAGAAG+TGG | + | chr3.4:16958897-16958916 | MS.gene97823:intron | 20.0% |
| !!! | ACTAATTTTACACTTTTGTT+TGG | + | chr3.4:16957967-16957986 | MS.gene97823:intron | 20.0% |
| !!! | ATATTATGTGGTTTAGAATA+TGG | - | chr3.4:16958453-16958472 | None:intergenic | 20.0% |
| !!! | ATTTAATCTTTTTTTAGTGG+TGG | + | chr3.4:16958212-16958231 | MS.gene97823:intron | 20.0% |
| !!! | TATATGTTGACAATACTTTT+TGG | + | chr3.4:16959266-16959285 | MS.gene97823:intron | 20.0% |
| ! | AAAATGCATATTGCTGAAAA+AGG | + | chr3.4:16957522-16957541 | MS.gene97823:CDS | 25.0% |
| ! | AAATACCAATATTCGATTGA+AGG | + | chr3.4:16958152-16958171 | MS.gene97823:intron | 25.0% |
| ! | ATGATATGTAGCAAAAAGAA+AGG | - | chr3.4:16958797-16958816 | None:intergenic | 25.0% |
| ! | ATTACTTGTATTGCAGAAAT+TGG | + | chr3.4:16959434-16959453 | MS.gene97823:intron | 25.0% |
| ! | TAAATCCTTCAATCGAATAT+TGG | - | chr3.4:16958160-16958179 | None:intergenic | 25.0% |
| ! | TATTGAATATATTAGGGTAC+CGG | + | chr3.4:16958687-16958706 | MS.gene97823:intron | 25.0% |
| ! | TTACTTGTATTGCAGAAATT+GGG | + | chr3.4:16959435-16959454 | MS.gene97823:intron | 25.0% |
| !! | CTGAATAACATAATTGCTTT+TGG | + | chr3.4:16958941-16958960 | MS.gene97823:intron | 25.0% |
| !! | GTTTAATAGAATTTAGGACA+TGG | + | chr3.4:16958027-16958046 | MS.gene97823:intron | 25.0% |
| AAATTGAAACCAACATCCAT+GGG | - | chr3.4:16958344-16958363 | None:intergenic | 30.0% | |
| AACTTGAAGGAATATATCCA+TGG | + | chr3.4:16959544-16959563 | MS.gene97823:CDS | 30.0% | |
| AATGCATCTTTCATTACTAG+TGG | - | chr3.4:16959414-16959433 | None:intergenic | 30.0% | |
| AGTATAGTCTAGATCAAAAG+AGG | + | chr3.4:16958576-16958595 | MS.gene97823:intron | 30.0% | |
| AGTATTGCATGACTTCATAA+TGG | + | chr3.4:16958744-16958763 | MS.gene97823:intron | 30.0% | |
| ATTGCTGAAAAAGGAAAACA+AGG | + | chr3.4:16957531-16957550 | MS.gene97823:CDS | 30.0% | |
| GGTCATACTTCAAAATTTAG+AGG | - | chr3.4:16958821-16958840 | None:intergenic | 30.0% | |
| TCATGCAATACTAAAGTTGA+TGG | - | chr3.4:16958736-16958755 | None:intergenic | 30.0% | |
| TTTCAAATTGAAGATGTGTC+TGG | + | chr3.4:16959333-16959352 | MS.gene97823:intron | 30.0% | |
| ! | ATATTCCTTCAAGTTTAGTG+AGG | - | chr3.4:16959539-16959558 | None:intergenic | 30.0% |
| !! | CATCAACAGTTCTGATTTTA+GGG | - | chr3.4:16957881-16957900 | None:intergenic | 30.0% |
| !! | GATACGATTCATTTTGAGTA+GGG | - | chr3.4:16958842-16958861 | None:intergenic | 30.0% |
| !! | TTTTGGAGACAAAATAAGCA+AGG | - | chr3.4:16959149-16959168 | None:intergenic | 30.0% |
| !!! | TTCTGATTTTAGGGTTTCTT+CGG | - | chr3.4:16957872-16957891 | None:intergenic | 30.0% |
| ACAATCACTTCTTCCAGATT+GGG | - | chr3.4:16959592-16959611 | None:intergenic | 35.0% | |
| ATACACCTCACTAAACTTGA+AGG | + | chr3.4:16959531-16959550 | MS.gene97823:CDS | 35.0% | |
| ATGGAATGGAGTGAAAATCA+AGG | + | chr3.4:16959471-16959490 | MS.gene97823:CDS | 35.0% | |
| CATAATATATGCAAGATCCG+AGG | - | chr3.4:16958250-16958269 | None:intergenic | 35.0% | |
| CCAAAATAAGACAACTTGAC+CGG | - | chr3.4:16958709-16958728 | None:intergenic | 35.0% | |
| CCATGAAGAAACAAGACAAT+TGG | - | chr3.4:16957558-16957577 | None:intergenic | 35.0% | |
| CCTAAAATCAGAACTGTTGA+TGG | + | chr3.4:16957879-16957898 | MS.gene97823:CDS | 35.0% | |
| GAAAGTCTATAAGTGCAACA+AGG | - | chr3.4:16957731-16957750 | None:intergenic | 35.0% | |
| GAAATTGAAACCAACATCCA+TGG | - | chr3.4:16958345-16958364 | None:intergenic | 35.0% | |
| GAAGAAGTGATTGTCCAAAA+AGG | + | chr3.4:16959598-16959617 | MS.gene97823:CDS | 35.0% | |
| GAATTAACCGATCAACCATA+AGG | - | chr3.4:16958605-16958624 | None:intergenic | 35.0% | |
| GATCAAAAGAGGAAACCTTA+TGG | + | chr3.4:16958587-16958606 | MS.gene97823:intron | 35.0% | |
| GCTTATTGAAGATGGAGAAT+CGG | - | chr3.4:16957679-16957698 | None:intergenic | 35.0% | |
| GTACCTGTGAAATTCATTAC+AGG | + | chr3.4:16959493-16959512 | MS.gene97823:CDS | 35.0% | |
| GTCTCCAAAATTGAGAAAAC+AGG | + | chr3.4:16959159-16959178 | MS.gene97823:CDS | 35.0% | |
| GTTGCACTTATAGACTTTCT+AGG | + | chr3.4:16957732-16957751 | MS.gene97823:CDS | 35.0% | |
| TATTTGTCGAAAACAACACG+AGG | - | chr3.4:16959248-16959267 | None:intergenic | 35.0% | |
| TCACCTGTAATGAATTTCAC+AGG | - | chr3.4:16959499-16959518 | None:intergenic | 35.0% | |
| TGAAGGAATATATCCATGGT+GGG | + | chr3.4:16959548-16959567 | MS.gene97823:CDS | 35.0% | |
| TGTTGATCAAGTGTTTCTTG+TGG | + | chr3.4:16957755-16957774 | MS.gene97823:CDS | 35.0% | |
| TTGAAGGAATATATCCATGG+TGG | + | chr3.4:16959547-16959566 | MS.gene97823:CDS | 35.0% | |
| ! | ACATAGGCTTTGATTCTTTC+AGG | - | chr3.4:16957828-16957847 | None:intergenic | 35.0% |
| ! | AGTGTTAAAATTTGAGGCCA+TGG | - | chr3.4:16958422-16958441 | None:intergenic | 35.0% |
| ! | CATAGGCTTTGATTCTTTCA+GGG | - | chr3.4:16957827-16957846 | None:intergenic | 35.0% |
| ! | GAAGCCTGTTTTCTCAATTT+TGG | - | chr3.4:16959166-16959185 | None:intergenic | 35.0% |
| ! | TTGATTTTCACTCCATTCCA+TGG | - | chr3.4:16959472-16959491 | None:intergenic | 35.0% |
| !! | CCAATTGTCTTGTTTCTTCA+TGG | + | chr3.4:16957555-16957574 | MS.gene97823:CDS | 35.0% |
| !! | CCATCAACAGTTCTGATTTT+AGG | - | chr3.4:16957882-16957901 | None:intergenic | 35.0% |
| !! | CGATACGATTCATTTTGAGT+AGG | - | chr3.4:16958843-16958862 | None:intergenic | 35.0% |
| !!! | AATCTTTTTTTAGTGGTGGC+CGG | + | chr3.4:16958216-16958235 | MS.gene97823:intron | 35.0% |
| !!! | CGGTCAAGTTGTCTTATTTT+GGG | + | chr3.4:16958707-16958726 | MS.gene97823:intron | 35.0% |
| AAGGAATATATCCATGGTGG+GGG | + | chr3.4:16959550-16959569 | MS.gene97823:CDS | 40.0% | |
| AGGAATAGAACACAGAACAG+TGG | + | chr3.4:16957485-16957504 | MS.gene97823:CDS | 40.0% | |
| AGTGATTGTCCAAAAAGGAG+TGG | + | chr3.4:16959603-16959622 | MS.gene97823:CDS | 40.0% | |
| ATATTTCCCAAGGGAGAGTA+TGG | + | chr3.4:16959066-16959085 | MS.gene97823:CDS | 40.0% | |
| ATCCATTAACATCAGGCGTA+AGG | - | chr3.4:16958514-16958533 | None:intergenic | 40.0% | |
| ATTGAGAAAACAGGCTTCAC+TGG | + | chr3.4:16959168-16959187 | MS.gene97823:CDS | 40.0% | |
| CTTCAATAAGCAGCTACACA+GGG | + | chr3.4:16957688-16957707 | MS.gene97823:CDS | 40.0% | |
| GAAGGAATATATCCATGGTG+GGG | + | chr3.4:16959549-16959568 | MS.gene97823:CDS | 40.0% | |
| GACAATCACTTCTTCCAGAT+TGG | - | chr3.4:16959593-16959612 | None:intergenic | 40.0% | |
| GAGGAAACCTTATGGTTGAT+CGG | + | chr3.4:16958595-16958614 | MS.gene97823:intron | 40.0% | |
| GAGTCAGATCCATTAACATC+AGG | - | chr3.4:16958521-16958540 | None:intergenic | 40.0% | |
| GTGTAGCTGCTTATTGAAGA+TGG | - | chr3.4:16957687-16957706 | None:intergenic | 40.0% | |
| GTTTCTTGTGGCTCATGATT+GGG | + | chr3.4:16957767-16957786 | MS.gene97823:CDS | 40.0% | |
| TAAAAAATGCCCTCACAGCT+CGG | + | chr3.4:16959028-16959047 | MS.gene97823:CDS | 40.0% | |
| TACACAGGGTTTCATATGGT+TGG | + | chr3.4:16957702-16957721 | MS.gene97823:CDS | 40.0% | |
| TACCTTACGCCTGATGTTAA+TGG | + | chr3.4:16958509-16958528 | MS.gene97823:intron | 40.0% | |
| TACTCTCCCTTGGGAAATAT+TGG | - | chr3.4:16959066-16959085 | None:intergenic | 40.0% | |
| TCTCCTTTCATGTGAGAGAT+CGG | + | chr3.4:16958363-16958382 | MS.gene97823:intron | 40.0% | |
| TCTTCAATAAGCAGCTACAC+AGG | + | chr3.4:16957687-16957706 | MS.gene97823:CDS | 40.0% | |
| TGTTTCTTGTGGCTCATGAT+TGG | + | chr3.4:16957766-16957785 | MS.gene97823:CDS | 40.0% | |
| TTTCTTGTGGCTCATGATTG+GGG | + | chr3.4:16957768-16957787 | MS.gene97823:CDS | 40.0% | |
| ! | ATTTTTCTCCCATAGTCCCA+TGG | + | chr3.4:16958325-16958344 | MS.gene97823:intron | 40.0% |
| !!! | ATCTTTTTTTAGTGGTGGCC+GGG | + | chr3.4:16958217-16958236 | MS.gene97823:intron | 40.0% |
| !!! | CCGGTCAAGTTGTCTTATTT+TGG | + | chr3.4:16958706-16958725 | MS.gene97823:intron | 40.0% |
| !!! | TTGCTTTTGGTTCATACCAC+AGG | + | chr3.4:16958954-16958973 | MS.gene97823:intron | 40.0% |
| AACCAACATCCATGGGACTA+TGG | - | chr3.4:16958337-16958356 | None:intergenic | 45.0% | |
| ACCAACATCCATGGGACTAT+GGG | - | chr3.4:16958336-16958355 | None:intergenic | 45.0% | |
| AGGCAAAATGGAAGCTGAGA+TGG | + | chr3.4:16958981-16959000 | MS.gene97823:CDS | 45.0% | |
| CAAAGAAGATGTGCCCAATC+TGG | + | chr3.4:16959576-16959595 | MS.gene97823:CDS | 45.0% | |
| CAACAATCAAGAAGCAGCAG+AGG | + | chr3.4:16959633-16959652 | MS.gene97823:CDS | 45.0% | |
| CACAGAACAGTGGAAGTGAA+TGG | + | chr3.4:16957495-16957514 | MS.gene97823:CDS | 45.0% | |
| CAGCTACACAGGGTTTCATA+TGG | + | chr3.4:16957698-16957717 | MS.gene97823:CDS | 45.0% | |
| GGGAACACTGAGACAAACAT+AGG | - | chr3.4:16957844-16957863 | None:intergenic | 45.0% | |
| GGTCCTCCAATATTTCCCAA+GGG | + | chr3.4:16959057-16959076 | MS.gene97823:CDS | 45.0% | |
| TCGTCTTCTGTAAGCCAAGA+GGG | - | chr3.4:16959126-16959145 | None:intergenic | 45.0% | |
| TCTCCCTTGGGAAATATTGG+AGG | - | chr3.4:16959063-16959082 | None:intergenic | 45.0% | |
| TGGTCCTCCAATATTTCCCA+AGG | + | chr3.4:16959056-16959075 | MS.gene97823:CDS | 45.0% | |
| TTAGGGTTTCTTCGGAGCAA+GGG | - | chr3.4:16957864-16957883 | None:intergenic | 45.0% | |
| TTCTGTAAGCCAAGAGGGTA+AGG | - | chr3.4:16959121-16959140 | None:intergenic | 45.0% | |
| TTGCAGAAATTGGGAGCTGA+TGG | + | chr3.4:16959444-16959463 | MS.gene97823:intron | 45.0% | |
| ! | ATCTCAGCTTCCATTTTGCC+TGG | - | chr3.4:16958982-16959001 | None:intergenic | 45.0% |
| ! | TGAGCTTAGCTCAGTTGGTA+GGG | - | chr3.4:16958279-16958298 | None:intergenic | 45.0% |
| ! | TTTAGGGTTTCTTCGGAGCA+AGG | - | chr3.4:16957865-16957884 | None:intergenic | 45.0% |
| !! | GCAAAGGTACCAACCAATGA+TGG | - | chr3.4:16957796-16957815 | None:intergenic | 45.0% |
| !!! | TCTTTTTTTAGTGGTGGCCG+GGG | + | chr3.4:16958218-16958237 | MS.gene97823:intron | 45.0% |
| AAGATCCGAGGTTCAAACCC+CGG | - | chr3.4:16958238-16958257 | None:intergenic | 50.0% | |
| ACCACAGGAACCAGGCAAAA+TGG | + | chr3.4:16958969-16958988 | MS.gene97823:intron | 50.0% | |
| AGCTGAGAGCTACAATCTGG+TGG | - | chr3.4:16957608-16957627 | None:intergenic | 50.0% | |
| ATTGTAGCTCTCAGCTCCCT+CGG | + | chr3.4:16957612-16957631 | MS.gene97823:CDS | 50.0% | |
| CCAACTGAGCTAAGCTCACA+AGG | + | chr3.4:16958281-16958300 | MS.gene97823:intron | 50.0% | |
| CCAGTTCCATACTCTCCCTT+GGG | - | chr3.4:16959075-16959094 | None:intergenic | 50.0% | |
| CCTTGTGAGCTTAGCTCAGT+TGG | - | chr3.4:16958284-16958303 | None:intergenic | 50.0% | |
| CTTCTTTGAATCCCCCACCA+TGG | - | chr3.4:16959564-16959583 | None:intergenic | 50.0% | |
| GAAGCTGAGATGGCTGAAGT+TGG | + | chr3.4:16958991-16959010 | MS.gene97823:CDS | 50.0% | |
| GAGAAAACAGGCTTCACTGG+AGG | + | chr3.4:16959171-16959190 | MS.gene97823:CDS | 50.0% | |
| GTCGTCTTCTGTAAGCCAAG+AGG | - | chr3.4:16959127-16959146 | None:intergenic | 50.0% | |
| GTGAGCTTAGCTCAGTTGGT+AGG | - | chr3.4:16958280-16958299 | None:intergenic | 50.0% | |
| TCCCATAGTCCCATGGATGT+TGG | + | chr3.4:16958332-16958351 | MS.gene97823:intron | 50.0% | |
| TCCTCGAACTCTGGTACTCA+TGG | + | chr3.4:16957580-16957599 | MS.gene97823:CDS | 50.0% | |
| TGGTTCATACCACAGGAACC+AGG | + | chr3.4:16958961-16958980 | MS.gene97823:intron | 50.0% | |
| TTCATGGCTTCCTCGAACTC+TGG | + | chr3.4:16957571-16957590 | MS.gene97823:CDS | 50.0% | |
| TTTCAGGGCGAAACGTGCAA+AGG | - | chr3.4:16957812-16957831 | None:intergenic | 50.0% | |
| ! | ACCAGTTTTCCGAGCTGTGA+GGG | - | chr3.4:16959040-16959059 | None:intergenic | 50.0% |
| ! | ATTGGGGTGCCATCATTGGT+TGG | + | chr3.4:16957784-16957803 | MS.gene97823:CDS | 50.0% |
| ! | CATGATTGGGGTGCCATCAT+TGG | + | chr3.4:16957780-16957799 | MS.gene97823:CDS | 50.0% |
| ! | CCAAGGGAGAGTATGGAACT+GGG | + | chr3.4:16959073-16959092 | MS.gene97823:CDS | 50.0% |
| ! | GCACCGATCTCTCACATGAA+AGG | - | chr3.4:16958369-16958388 | None:intergenic | 50.0% |
| ! | TCCATTTTGCCTGGTTCCTG+TGG | - | chr3.4:16958973-16958992 | None:intergenic | 50.0% |
| ! | TGTAGTGCGCCACTCCTTTT+TGG | - | chr3.4:16959615-16959634 | None:intergenic | 50.0% |
| !! | AATCGGTGTCACCATAGCCA+CGG | - | chr3.4:16957662-16957681 | None:intergenic | 50.0% |
| !! | GGTAAGGTGTCAGGAGTATC+CGG | - | chr3.4:16959105-16959124 | None:intergenic | 50.0% |
| !! | GTAAGGTGTCAGGAGTATCC+GGG | - | chr3.4:16959104-16959123 | None:intergenic | 50.0% |
| ATTGGGAGCTGATGGCACCA+TGG | + | chr3.4:16959452-16959471 | MS.gene97823:CDS | 55.0% | |
| CCCAGTTCCATACTCTCCCT+TGG | - | chr3.4:16959076-16959095 | None:intergenic | 55.0% | |
| CTCCTGACACCTTACCCTCT+TGG | + | chr3.4:16959109-16959128 | MS.gene97823:CDS | 55.0% | |
| GAGCTGATGGCACCATGGAA+TGG | + | chr3.4:16959457-16959476 | MS.gene97823:CDS | 55.0% | |
| GCCATGAGTACCAGAGTTCG+AGG | - | chr3.4:16957584-16957603 | None:intergenic | 55.0% | |
| GGGAGCTGAGAGCTACAATC+TGG | - | chr3.4:16957611-16957630 | None:intergenic | 55.0% | |
| GTATGGAACTGGGTTCGACC+CGG | + | chr3.4:16959083-16959102 | MS.gene97823:CDS | 55.0% | |
| TCACCATAGCCACGGAGATC+AGG | - | chr3.4:16957654-16957673 | None:intergenic | 55.0% | |
| ! | AGCCAAGAGGGTAAGGTGTC+AGG | - | chr3.4:16959114-16959133 | None:intergenic | 55.0% |
| ! | CCCAAGGGAGAGTATGGAAC+TGG | + | chr3.4:16959072-16959091 | MS.gene97823:CDS | 55.0% |
| ! | GACCAGTTTTCCGAGCTGTG+AGG | - | chr3.4:16959041-16959060 | None:intergenic | 55.0% |
| !! | GATGGCATGCGTGCTGCTTA+TGG | + | chr3.4:16957897-16957916 | MS.gene97823:CDS | 55.0% |
| GCCCTCACAGCTCGGAAAAC+TGG | + | chr3.4:16959036-16959055 | MS.gene97823:CDS | 60.0% | |
| GCTCCTGATCTCCGTGGCTA+TGG | + | chr3.4:16957648-16957667 | MS.gene97823:CDS | 60.0% | |
| AGCCACGGCATGGTAGCCGA+GGG | - | chr3.4:16957631-16957650 | None:intergenic | 65.0% | |
| GCCACGGAGATCAGGAGCCA+CGG | - | chr3.4:16957646-16957665 | None:intergenic | 65.0% | |
| GGAGATCAGGAGCCACGGCA+TGG | - | chr3.4:16957641-16957660 | None:intergenic | 65.0% | |
| GGTGGCCGGGGTTTGAACCT+CGG | + | chr3.4:16958230-16958249 | MS.gene97823:intron | 65.0% | |
| CTCCCTCGGCTACCATGCCG+TGG | + | chr3.4:16957626-16957645 | MS.gene97823:CDS | 70.0% | |
| GAGCCACGGCATGGTAGCCG+AGG | - | chr3.4:16957632-16957651 | None:intergenic | 70.0% | |
| GCCGTGGCTCCTGATCTCCG+TGG | + | chr3.4:16957642-16957661 | MS.gene97823:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 16957480 | 16959696 | 16957480 | ID=MS.gene97823 |
| chr3.4 | mRNA | 16957480 | 16959696 | 16957480 | ID=MS.gene97823.t1;Parent=MS.gene97823 |
| chr3.4 | exon | 16957480 | 16957947 | 16957480 | ID=MS.gene97823.t1.exon1;Parent=MS.gene97823.t1 |
| chr3.4 | CDS | 16957480 | 16957947 | 16957480 | ID=cds.MS.gene97823.t1;Parent=MS.gene97823.t1 |
| chr3.4 | exon | 16958976 | 16959220 | 16958976 | ID=MS.gene97823.t1.exon2;Parent=MS.gene97823.t1 |
| chr3.4 | CDS | 16958976 | 16959220 | 16958976 | ID=cds.MS.gene97823.t1;Parent=MS.gene97823.t1 |
| chr3.4 | exon | 16959450 | 16959696 | 16959450 | ID=MS.gene97823.t1.exon3;Parent=MS.gene97823.t1 |
| chr3.4 | CDS | 16959450 | 16959696 | 16959450 | ID=cds.MS.gene97823.t1;Parent=MS.gene97823.t1 |
| Gene Sequence |
| Protein sequence |
