Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene98470.t1 | XP_024639230.1 | 59.5 | 751 | 23 | 5 | 1 | 474 | 1 | 747 | 1.30E-208 | 735.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene98470.t1 | A0A396HN66 | 59.5 | 751 | 23 | 5 | 1 | 474 | 1 | 747 | 9.6e-209 | 735.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049549 | MS.gene98470 | 0.822339 | 2.50E-53 | -1.69E-46 |
MS.gene050315 | MS.gene98470 | -0.800179 | 1.63E-48 | -1.69E-46 |
MS.gene051158 | MS.gene98470 | 0.806649 | 7.42E-50 | -1.69E-46 |
MS.gene051385 | MS.gene98470 | 0.80799 | 3.86E-50 | -1.69E-46 |
MS.gene051996 | MS.gene98470 | 0.830443 | 2.93E-55 | -1.69E-46 |
MS.gene052211 | MS.gene98470 | 0.80112 | 1.05E-48 | -1.69E-46 |
MS.gene052223 | MS.gene98470 | 0.832539 | 8.92E-56 | -1.69E-46 |
MS.gene05244 | MS.gene98470 | 0.801348 | 9.39E-49 | -1.69E-46 |
MS.gene053406 | MS.gene98470 | 0.826309 | 2.91E-54 | -1.69E-46 |
MS.gene054138 | MS.gene98470 | 0.820353 | 7.18E-53 | -1.69E-46 |
MS.gene054147 | MS.gene98470 | 0.827954 | 1.18E-54 | -1.69E-46 |
MS.gene054277 | MS.gene98470 | 0.804569 | 2.03E-49 | -1.69E-46 |
MS.gene054742 | MS.gene98470 | 0.858556 | 7.60E-63 | -1.69E-46 |
MS.gene056076 | MS.gene98470 | 0.803561 | 3.29E-49 | -1.69E-46 |
MS.gene056330 | MS.gene98470 | 0.850144 | 2.05E-60 | -1.69E-46 |
MS.gene056337 | MS.gene98470 | -0.805338 | 1.40E-49 | -1.69E-46 |
MS.gene056680 | MS.gene98470 | 0.84906 | 4.12E-60 | -1.69E-46 |
MS.gene056920 | MS.gene98470 | 0.82562 | 4.24E-54 | -1.69E-46 |
MS.gene056922 | MS.gene98470 | 0.803022 | 4.25E-49 | -1.69E-46 |
MS.gene056923 | MS.gene98470 | 0.819914 | 9.04E-53 | -1.69E-46 |
MS.gene056924 | MS.gene98470 | 0.823284 | 1.50E-53 | -1.69E-46 |
MS.gene058177 | MS.gene98470 | 0.800454 | 1.43E-48 | -1.69E-46 |
MS.gene059891 | MS.gene98470 | 0.806861 | 6.70E-50 | -1.69E-46 |
MS.gene059892 | MS.gene98470 | 0.824062 | 9.89E-54 | -1.69E-46 |
MS.gene060087 | MS.gene98470 | 0.828203 | 1.02E-54 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene85145 | MS.gene98470 | PPI |
MS.gene98470 | MS.gene76530 | PPI |
MS.gene98470 | MS.gene069865 | PPI |
MS.gene36347 | MS.gene98470 | PPI |
MS.gene36348 | MS.gene98470 | PPI |
MS.gene85146 | MS.gene98470 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene98470.t1 | MTR_5g028190 | 68.627 | 204 | 57 | 3 | 76 | 276 | 1 | 200 | 3.31e-84 | 269 |
MS.gene98470.t1 | MTR_5g028190 | 87.692 | 130 | 16 | 0 | 343 | 472 | 404 | 533 | 1.11e-69 | 231 |
MS.gene98470.t1 | MTR_5g028110 | 77.273 | 132 | 30 | 0 | 343 | 474 | 45 | 176 | 1.16e-65 | 209 |
MS.gene98470.t1 | MTR_5g028130 | 80.303 | 132 | 26 | 0 | 343 | 474 | 208 | 339 | 8.59e-65 | 213 |
MS.gene98470.t1 | MTR_5g028510 | 44.841 | 252 | 105 | 7 | 46 | 273 | 86 | 327 | 1.15e-49 | 173 |
MS.gene98470.t1 | MTR_5g028450 | 65.152 | 132 | 42 | 1 | 343 | 470 | 163 | 294 | 4.06e-43 | 154 |
MS.gene98470.t1 | MTR_6g017215 | 55.285 | 123 | 55 | 0 | 343 | 465 | 67 | 189 | 6.53e-35 | 130 |
MS.gene98470.t1 | MTR_5g028690 | 46.269 | 134 | 67 | 1 | 343 | 471 | 102 | 235 | 4.47e-33 | 125 |
MS.gene98470.t1 | MTR_5g091220 | 48.837 | 129 | 65 | 1 | 347 | 474 | 477 | 605 | 4.96e-29 | 120 |
MS.gene98470.t1 | MTR_5g091220 | 29.358 | 218 | 132 | 8 | 57 | 269 | 31 | 231 | 8.14e-12 | 67.8 |
MS.gene98470.t1 | MTR_5g028930 | 47.761 | 134 | 64 | 3 | 343 | 471 | 484 | 616 | 8.32e-27 | 114 |
MS.gene98470.t1 | MTR_5g028930 | 37.945 | 253 | 120 | 12 | 51 | 287 | 54 | 285 | 7.41e-22 | 99.4 |
MS.gene98470.t1 | MTR_2g438640 | 26.386 | 451 | 266 | 15 | 60 | 470 | 163 | 587 | 3.71e-26 | 112 |
MS.gene98470.t1 | MTR_3g055310 | 43.548 | 124 | 63 | 1 | 343 | 466 | 217 | 333 | 4.20e-26 | 109 |
MS.gene98470.t1 | MTR_3g055310 | 43.548 | 124 | 63 | 1 | 343 | 466 | 280 | 396 | 6.95e-26 | 109 |
MS.gene98470.t1 | MTR_3g055310 | 43.548 | 124 | 63 | 1 | 343 | 466 | 332 | 448 | 1.35e-25 | 109 |
MS.gene98470.t1 | MTR_3g055310 | 43.548 | 124 | 63 | 1 | 343 | 466 | 360 | 476 | 1.49e-25 | 109 |
MS.gene98470.t1 | MTR_3g055310 | 43.548 | 124 | 63 | 1 | 343 | 466 | 358 | 474 | 1.64e-25 | 109 |
MS.gene98470.t1 | MTR_3g055310 | 43.548 | 124 | 63 | 1 | 343 | 466 | 385 | 501 | 2.07e-25 | 109 |
MS.gene98470.t1 | MTR_2g438740 | 40.000 | 135 | 72 | 3 | 343 | 472 | 438 | 568 | 2.84e-22 | 100 |
MS.gene98470.t1 | MTR_2g438740 | 29.902 | 204 | 121 | 9 | 56 | 257 | 41 | 224 | 1.03e-11 | 67.4 |
MS.gene98470.t1 | MTR_2g438440 | 41.085 | 129 | 74 | 2 | 343 | 470 | 558 | 685 | 1.83e-20 | 95.1 |
MS.gene98470.t1 | MTR_5g028900 | 51.111 | 90 | 43 | 1 | 349 | 438 | 58 | 146 | 7.96e-20 | 86.7 |
MS.gene98470.t1 | MTR_2g438400 | 41.221 | 131 | 71 | 3 | 343 | 470 | 417 | 544 | 9.30e-20 | 92.4 |
MS.gene98470.t1 | MTR_2g438720 | 39.098 | 133 | 71 | 4 | 343 | 470 | 564 | 691 | 3.29e-19 | 91.3 |
MS.gene98470.t1 | MTR_2g438700 | 38.281 | 128 | 77 | 2 | 343 | 469 | 562 | 688 | 5.50e-19 | 90.5 |
MS.gene98470.t1 | MTR_2g020470 | 37.273 | 110 | 62 | 1 | 343 | 452 | 533 | 635 | 2.02e-18 | 88.6 |
MS.gene98470.t1 | MTR_2g020510 | 39.623 | 106 | 57 | 1 | 347 | 452 | 555 | 653 | 5.11e-18 | 87.4 |
MS.gene98470.t1 | MTR_3g455790 | 41.071 | 112 | 65 | 1 | 343 | 453 | 468 | 579 | 6.16e-18 | 87.0 |
MS.gene98470.t1 | MTR_3g455790 | 27.619 | 210 | 136 | 6 | 57 | 264 | 33 | 228 | 4.44e-11 | 65.5 |
MS.gene98470.t1 | MTR_2g438640 | 37.984 | 129 | 78 | 2 | 343 | 470 | 537 | 664 | 1.46e-17 | 85.9 |
MS.gene98470.t1 | MTR_2g438640 | 37.984 | 129 | 78 | 2 | 343 | 470 | 563 | 690 | 1.49e-17 | 85.9 |
MS.gene98470.t1 | MTR_5g028840 | 38.400 | 125 | 68 | 1 | 343 | 467 | 63 | 178 | 8.21e-17 | 79.3 |
MS.gene98470.t1 | MTR_2g438760 | 40.909 | 88 | 52 | 0 | 343 | 430 | 432 | 519 | 2.17e-15 | 79.0 |
MS.gene98470.t1 | MTR_2g438760 | 27.074 | 229 | 142 | 9 | 45 | 268 | 33 | 241 | 3.84e-11 | 65.9 |
MS.gene98470.t1 | MTR_5g085360 | 36.441 | 118 | 72 | 2 | 347 | 463 | 607 | 722 | 1.10e-14 | 77.0 |
MS.gene98470.t1 | MTR_3g055750 | 28.571 | 217 | 139 | 6 | 57 | 271 | 33 | 235 | 1.81e-14 | 75.5 |
MS.gene98470.t1 | MTR_3g051060 | 28.899 | 218 | 124 | 9 | 60 | 261 | 28 | 230 | 1.61e-12 | 70.1 |
MS.gene98470.t1 | MTR_2g020450 | 32.800 | 125 | 82 | 2 | 343 | 466 | 554 | 677 | 2.04e-12 | 69.7 |
MS.gene98470.t1 | MTR_2g020450 | 28.302 | 212 | 131 | 8 | 55 | 260 | 4 | 200 | 7.05e-11 | 65.1 |
MS.gene98470.t1 | MTR_3g452020 | 34.646 | 127 | 78 | 2 | 343 | 464 | 469 | 595 | 2.71e-12 | 69.3 |
MS.gene98470.t1 | MTR_3g452020 | 28.571 | 210 | 134 | 6 | 57 | 264 | 33 | 228 | 5.51e-12 | 68.6 |
MS.gene98470.t1 | MTR_3g452020 | 35.135 | 111 | 71 | 1 | 343 | 452 | 293 | 403 | 3.05e-12 | 68.6 |
MS.gene98470.t1 | MTR_2g017930 | 31.967 | 122 | 80 | 2 | 345 | 464 | 518 | 638 | 4.25e-12 | 68.9 |
MS.gene98470.t1 | MTR_3g058570 | 33.858 | 127 | 83 | 1 | 346 | 471 | 253 | 379 | 8.82e-12 | 67.0 |
MS.gene98470.t1 | MTR_3g058550 | 30.978 | 184 | 100 | 7 | 92 | 261 | 9 | 179 | 2.59e-11 | 63.5 |
MS.gene98470.t1 | MTR_3g050500 | 31.496 | 127 | 83 | 2 | 343 | 466 | 594 | 719 | 8.87e-11 | 64.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene98470.t1 | AT3G18670 | 47.761 | 134 | 66 | 3 | 343 | 474 | 511 | 642 | 1.46e-27 | 116 |
MS.gene98470.t1 | AT3G18670 | 33.184 | 223 | 125 | 8 | 57 | 270 | 50 | 257 | 2.88e-27 | 115 |
MS.gene98470.t1 | AT3G18670 | 47.761 | 134 | 66 | 3 | 343 | 474 | 456 | 587 | 1.54e-27 | 116 |
MS.gene98470.t1 | AT3G18670 | 33.803 | 213 | 117 | 8 | 57 | 260 | 50 | 247 | 1.08e-25 | 110 |
MS.gene98470.t1 | AT5G35810 | 36.957 | 138 | 81 | 2 | 343 | 474 | 198 | 335 | 2.88e-21 | 95.1 |
MS.gene98470.t1 | AT5G04700 | 41.176 | 136 | 77 | 3 | 338 | 470 | 520 | 655 | 6.83e-20 | 93.2 |
MS.gene98470.t1 | AT5G04700 | 27.650 | 217 | 142 | 4 | 56 | 270 | 80 | 283 | 2.23e-15 | 79.3 |
MS.gene98470.t1 | AT5G04730 | 38.889 | 126 | 77 | 0 | 345 | 470 | 463 | 588 | 2.23e-19 | 91.7 |
MS.gene98470.t1 | AT5G04690 | 40.741 | 135 | 77 | 3 | 338 | 470 | 498 | 631 | 3.02e-19 | 91.3 |
MS.gene98470.t1 | AT5G04690 | 26.809 | 235 | 141 | 7 | 48 | 279 | 67 | 273 | 2.92e-13 | 72.4 |
MS.gene98470.t1 | AT5G04690 | 40.741 | 135 | 77 | 3 | 338 | 470 | 512 | 645 | 3.25e-19 | 91.3 |
MS.gene98470.t1 | AT5G04690 | 28.205 | 234 | 153 | 5 | 48 | 279 | 67 | 287 | 1.16e-17 | 86.3 |
MS.gene98470.t1 | AT5G04690 | 40.741 | 135 | 77 | 3 | 338 | 470 | 478 | 611 | 3.72e-19 | 90.9 |
MS.gene98470.t1 | AT5G04690 | 29.302 | 215 | 137 | 5 | 48 | 260 | 67 | 268 | 9.77e-16 | 80.1 |
MS.gene98470.t1 | AT3G54065 | 42.268 | 97 | 50 | 1 | 343 | 433 | 83 | 179 | 3.85e-19 | 87.0 |
MS.gene98470.t1 | AT5G04680 | 34.884 | 129 | 83 | 1 | 343 | 470 | 508 | 636 | 3.25e-16 | 81.6 |
MS.gene98470.t1 | AT5G04680 | 34.884 | 129 | 83 | 1 | 343 | 470 | 522 | 650 | 3.84e-16 | 81.6 |
MS.gene98470.t1 | AT5G04680 | 30.137 | 219 | 134 | 9 | 56 | 270 | 67 | 270 | 2.73e-13 | 72.8 |
MS.gene98470.t1 | AT5G04680 | 34.884 | 129 | 83 | 1 | 343 | 470 | 399 | 527 | 4.44e-16 | 81.3 |
MS.gene98470.t1 | AT5G04680 | 34.884 | 129 | 83 | 1 | 343 | 470 | 551 | 679 | 4.50e-16 | 81.6 |
MS.gene98470.t1 | AT5G04680 | 30.137 | 219 | 134 | 9 | 56 | 270 | 67 | 270 | 2.94e-13 | 72.8 |
MS.gene98470.t1 | AT5G04700 | 27.650 | 217 | 142 | 4 | 56 | 270 | 80 | 283 | 4.19e-15 | 77.8 |
Find 106 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AATTCATGCACTTCTCTTTC+AGG | 0.124188 | 5.4:+18997977 | None:intergenic |
AACTTACCCAACTGCTTTAC+TGG | 0.201955 | 5.4:+18997732 | None:intergenic |
TGTATCACTGCAGAAATATT+TGG | 0.219312 | 5.4:-18999479 | MS.gene98470:intron |
TTCACTTGCTATGCTCTTAA+AGG | 0.220345 | 5.4:-18995889 | MS.gene98470:CDS |
TTAGAACGCGCACCAATTTC+AGG | 0.251761 | 5.4:+19007108 | None:intergenic |
CTTCGCTATATTCGTGTTTC+CGG | 0.254247 | 5.4:+19005830 | None:intergenic |
AATATATTCCACATCCTCTA+TGG | 0.260429 | 5.4:-19005991 | MS.gene98470:CDS |
GTGACCTCTATTCCTGAAAT+TGG | 0.292763 | 5.4:-19007120 | MS.gene98470:intron |
TTTCCAAGTGGTAGTGGATA+TGG | 0.311953 | 5.4:-18999264 | MS.gene98470:CDS |
ACTTCGGTCCTTCTCTTCAT+TGG | 0.319322 | 5.4:-18996029 | MS.gene98470:CDS |
CTTCACGTTGCGGTAGTTGC+TGG | 0.322177 | 5.4:-19005957 | MS.gene98470:CDS |
CCAAAGACAACTACGAAAAC+TGG | 0.369243 | 5.4:-19007191 | MS.gene98470:CDS |
CGAGGAAATTGTGAAGAAAT+TGG | 0.372095 | 5.4:-19005931 | MS.gene98470:CDS |
ATGCAAACTCGTTTATTAAG+AGG | 0.378242 | 5.4:-19006025 | MS.gene98470:CDS |
AACAGGGATTTCACCATCAT+TGG | 0.379563 | 5.4:+19005749 | None:intergenic |
TCACATGTCATTTCAGAATT+CGG | 0.380455 | 5.4:-18997464 | MS.gene98470:CDS |
CAAGCAGCAGCAAGAAGAAC+AGG | 0.386407 | 5.4:+19005732 | None:intergenic |
GATAAGTAATAAGTTTCAAT+TGG | 0.388393 | 5.4:+18995755 | None:intergenic |
GCTGCAGCTTTCACTGTCCC+TGG | 0.408383 | 5.4:-18996149 | MS.gene98470:intron |
TAGAAACCACAGAGAAGAAA+AGG | 0.416389 | 5.4:+18995931 | None:intergenic |
TTCCAAGTGGTAGTGGATAT+GGG | 0.416844 | 5.4:-18999263 | MS.gene98470:CDS |
TCACTTGCTATGCTCTTAAA+GGG | 0.427681 | 5.4:-18995888 | MS.gene98470:CDS |
CATTGGTCTTCATAGATAAC+AGG | 0.427879 | 5.4:+19005766 | None:intergenic |
ACCTTAGTGGCAATGACTTA+AGG | 0.429666 | 5.4:+18995973 | None:intergenic |
TTCACGTTGCGGTAGTTGCT+GGG | 0.432176 | 5.4:-19005956 | MS.gene98470:CDS |
CCACAAATCACACTTTGAAT+CGG | 0.443086 | 5.4:-18999331 | MS.gene98470:CDS |
TCTGTGTTTCCAAGTGGTAG+TGG | 0.443413 | 5.4:-18999270 | MS.gene98470:CDS |
TCGGTACTATTAAAGTTCTC+TGG | 0.448532 | 5.4:-18997445 | MS.gene98470:intron |
GACGGAACTAGAACGATAAC+AGG | 0.453839 | 5.4:+18995822 | None:intergenic |
CGATTCAAAGTGTGATTTGT+GGG | 0.456154 | 5.4:+18999332 | None:intergenic |
TATAGCGAAGTGTATGACTA+TGG | 0.458675 | 5.4:-19005817 | MS.gene98470:CDS |
TCCTTAAGTCATTGCCACTA+AGG | 0.460081 | 5.4:-18995974 | MS.gene98470:CDS |
TCTTGTGGGACATGGTCTGT+GGG | 0.464135 | 5.4:-19007148 | MS.gene98470:CDS |
TTTCAGCGTAACGAGCCGTT+AGG | 0.467061 | 5.4:+18996003 | None:intergenic |
TTGTGGGCAAGAGGCATTTG+AGG | 0.467341 | 5.4:+18999348 | None:intergenic |
CTTGTTAGAAACTATCTTGT+GGG | 0.467922 | 5.4:-19007162 | MS.gene98470:CDS |
ATGCGTGCCAATGCGTATAA+TGG | 0.471182 | 5.4:+18999297 | None:intergenic |
TGTGCAGCGATTTATATTGA+AGG | 0.474499 | 5.4:+19006075 | None:intergenic |
TCAGCTCAGCAACAAGAGCT+AGG | 0.486371 | 5.4:+19005853 | None:intergenic |
CATAGCAAGTGAAGCACAGA+AGG | 0.486804 | 5.4:+18995899 | None:intergenic |
ATCTTGTGGGACATGGTCTG+TGG | 0.486835 | 5.4:-19007149 | MS.gene98470:CDS |
GTGAAGAAATTGGTGAAGGA+AGG | 0.488215 | 5.4:-19005921 | MS.gene98470:CDS |
ATATATTCCACATCCTCTAT+GGG | 0.496055 | 5.4:-19005990 | MS.gene98470:CDS |
TTGTCTTGATTGTTTCCACC+AGG | 0.496117 | 5.4:+18996131 | None:intergenic |
TTGTACACCGTTGGAAGACC+TGG | 0.502955 | 5.4:-18999543 | MS.gene98470:CDS |
TGCGATAATTATCATCGGCC+AGG | 0.509460 | 5.4:+18999525 | None:intergenic |
TTGTGAAGCAGTAGAATGAC+AGG | 0.514230 | 5.4:-19007255 | None:intergenic |
CAATTCAAAGCTTCTTTCGT+AGG | 0.514295 | 5.4:-18997908 | MS.gene98470:intron |
TCTTTACCGTTGTACACCGT+TGG | 0.515694 | 5.4:-18999552 | MS.gene98470:CDS |
CGCACCAATTTCAGGAATAG+AGG | 0.521001 | 5.4:+19007116 | None:intergenic |
CTTTAGGAAGGTTATGTGGA+CGG | 0.525505 | 5.4:-18997770 | MS.gene98470:intron |
GCTCTTGTTGCTGAGCTGAC+CGG | 0.526277 | 5.4:-19005849 | MS.gene98470:CDS |
CCGATTCAAAGTGTGATTTG+TGG | 0.526820 | 5.4:+18999331 | None:intergenic |
TGCAAACTCGTTTATTAAGA+GGG | 0.527286 | 5.4:-19006024 | MS.gene98470:CDS |
TCTTGCAAATATTGCCAAAG+AGG | 0.534735 | 5.4:-18997936 | MS.gene98470:CDS |
TGTGATGTCGTGCAAGAACA+AGG | 0.535047 | 5.4:+18996100 | None:intergenic |
GAGGCATTTGAGGAAATCGT+TGG | 0.537554 | 5.4:+18999358 | None:intergenic |
ACAGAATGTCATCACTGCTA+AGG | 0.538381 | 5.4:-18999597 | MS.gene98470:intron |
GGTCCTCCCCATAGAGGATG+TGG | 0.539677 | 5.4:+19005983 | None:intergenic |
TCGTAGTTGTCTTTGGTCAG+TGG | 0.542773 | 5.4:+19007198 | None:intergenic |
TGTGCAACCATTATACGCAT+TGG | 0.543058 | 5.4:-18999304 | MS.gene98470:CDS |
AGTGCGAAAAGTAACCTTAG+TGG | 0.548121 | 5.4:+18995960 | None:intergenic |
TTATCGCCAGTAAAGCAGTT+GGG | 0.556264 | 5.4:-18997738 | MS.gene98470:intron |
AACCCATATCCACTACCACT+TGG | 0.557493 | 5.4:+18999261 | None:intergenic |
AAGTGTGATTTGTGGGCAAG+AGG | 0.558162 | 5.4:+18999339 | None:intergenic |
TCTTGTTAGAAACTATCTTG+TGG | 0.559427 | 5.4:-19007163 | MS.gene98470:CDS |
AGAAACTATCTTGTGGGACA+TGG | 0.562860 | 5.4:-19007156 | MS.gene98470:CDS |
AGAAACCACAGAGAAGAAAA+GGG | 0.563826 | 5.4:+18995932 | None:intergenic |
GCTTTAATTTGCAGGTGTGG+TGG | 0.564757 | 5.4:-19006108 | MS.gene98470:intron |
ACTTGAAAATCTCAAGGAAG+AGG | 0.567742 | 5.4:+18995790 | None:intergenic |
CAGAATGTCATCACTGCTAA+GGG | 0.569743 | 5.4:-18999596 | MS.gene98470:CDS |
GTTTCTTTAGGAAGGTTATG+TGG | 0.570625 | 5.4:-18997774 | MS.gene98470:intron |
GCCGATGATAATTATCGCAA+TGG | 0.574637 | 5.4:-18999521 | MS.gene98470:CDS |
TGAAGAAATTGGTGAAGGAA+GGG | 0.574748 | 5.4:-19005920 | MS.gene98470:CDS |
TTTATCGCCAGTAAAGCAGT+TGG | 0.576962 | 5.4:-18997739 | MS.gene98470:CDS |
CAGCTCAGCAACAAGAGCTA+GGG | 0.580236 | 5.4:+19005854 | None:intergenic |
TTATCTATGAAGACCAATGA+TGG | 0.582929 | 5.4:-19005762 | MS.gene98470:CDS |
TAAGAAAATATCACGGTCAG+AGG | 0.584733 | 5.4:-19005790 | MS.gene98470:CDS |
TGCGGTAGTTGCTGGGCACG+AGG | 0.589759 | 5.4:-19005949 | MS.gene98470:CDS |
TCTCTTCATTGGAATCCTAA+CGG | 0.591072 | 5.4:-18996018 | MS.gene98470:CDS |
CTGTAGACTTGAAAATCTCA+AGG | 0.594097 | 5.4:+18995784 | None:intergenic |
GCAGCTTTCACTGTCCCTGG+TGG | 0.601445 | 5.4:-18996146 | MS.gene98470:intron |
GGAACAAGCATTGCAGCGAG+TGG | 0.605832 | 5.4:-19007234 | MS.gene98470:CDS |
AGGAAGAGGCGCAATTGTGA+CGG | 0.607133 | 5.4:+18995804 | None:intergenic |
AGTATATTGAGAGCGGTGAG+TGG | 0.609550 | 5.4:-19006052 | MS.gene98470:CDS |
ACCATTGCGATAATTATCAT+CGG | 0.609954 | 5.4:+18999520 | None:intergenic |
TAGAACGATAACAGGAACAC+TGG | 0.611619 | 5.4:+18995830 | None:intergenic |
AACTACCGCAACGTGAAGAA+CGG | 0.612033 | 5.4:+19005962 | None:intergenic |
TTAGGATTCCAATGAAGAGA+AGG | 0.614556 | 5.4:+18996021 | None:intergenic |
ATGCCTTCTGTGTTTCCAAG+TGG | 0.615562 | 5.4:-18999276 | MS.gene98470:CDS |
CTTGTGGGACATGGTCTGTG+GGG | 0.619674 | 5.4:-19007147 | MS.gene98470:CDS |
CTACCACTTGGAAACACAGA+AGG | 0.622603 | 5.4:+18999273 | None:intergenic |
AAGAACGGTCCTCCCCATAG+AGG | 0.622685 | 5.4:+19005977 | None:intergenic |
AATTGTGAAGAAATTGGTGA+AGG | 0.625256 | 5.4:-19005925 | MS.gene98470:CDS |
GGTGGAAACAATCAAGACAA+TGG | 0.629811 | 5.4:-18996128 | MS.gene98470:CDS |
TGTCTTGATTGTTTCCACCA+GGG | 0.652150 | 5.4:+18996132 | None:intergenic |
GAGGACCGTTCTTCACGTTG+CGG | 0.655029 | 5.4:-19005967 | MS.gene98470:CDS |
GTGATGTCGTGCAAGAACAA+GGG | 0.659099 | 5.4:+18996101 | None:intergenic |
ATTCCACATCCTCTATGGGG+AGG | 0.660094 | 5.4:-19005986 | MS.gene98470:CDS |
AAGCAGCAGCAAGAAGAACA+GGG | 0.665135 | 5.4:+19005733 | None:intergenic |
GTGAAAATGAAAGACAATCG+AGG | 0.669964 | 5.4:-19005885 | MS.gene98470:CDS |
TCATCGGCCAGGTCTTCCAA+CGG | 0.671668 | 5.4:+18999536 | None:intergenic |
TGGTATATAAGAAAATATCA+CGG | 0.677081 | 5.4:-19005797 | MS.gene98470:CDS |
CTGCACAAGTATATTGAGAG+CGG | 0.680709 | 5.4:-19006059 | MS.gene98470:CDS |
GGTCTTCCAACGGTGTACAA+CGG | 0.687225 | 5.4:+18999546 | None:intergenic |
TATATTCCACATCCTCTATG+GGG | 0.688060 | 5.4:-19005989 | MS.gene98470:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.4 | gene | 18995770 | 19007262 | 18995770 | ID=MS.gene98470 |
chr5.4 | mRNA | 18995770 | 19007262 | 18995770 | ID=MS.gene98470.t1;Parent=MS.gene98470 |
chr5.4 | exon | 19007121 | 19007262 | 19007121 | ID=MS.gene98470.t1.exon1;Parent=MS.gene98470.t1 |
chr5.4 | CDS | 19007121 | 19007262 | 19007121 | ID=cds.MS.gene98470.t1;Parent=MS.gene98470.t1 |
chr5.4 | exon | 19005737 | 19006116 | 19005737 | ID=MS.gene98470.t1.exon2;Parent=MS.gene98470.t1 |
chr5.4 | CDS | 19005737 | 19006116 | 19005737 | ID=cds.MS.gene98470.t1;Parent=MS.gene98470.t1 |
chr5.4 | exon | 18999480 | 18999615 | 18999480 | ID=MS.gene98470.t1.exon3;Parent=MS.gene98470.t1 |
chr5.4 | CDS | 18999480 | 18999615 | 18999480 | ID=cds.MS.gene98470.t1;Parent=MS.gene98470.t1 |
chr5.4 | exon | 18999238 | 18999399 | 18999238 | ID=MS.gene98470.t1.exon4;Parent=MS.gene98470.t1 |
chr5.4 | CDS | 18999238 | 18999399 | 18999238 | ID=cds.MS.gene98470.t1;Parent=MS.gene98470.t1 |
chr5.4 | exon | 18997909 | 18998010 | 18997909 | ID=MS.gene98470.t1.exon5;Parent=MS.gene98470.t1 |
chr5.4 | CDS | 18997909 | 18998010 | 18997909 | ID=cds.MS.gene98470.t1;Parent=MS.gene98470.t1 |
chr5.4 | exon | 18997739 | 18997786 | 18997739 | ID=MS.gene98470.t1.exon6;Parent=MS.gene98470.t1 |
chr5.4 | CDS | 18997739 | 18997786 | 18997739 | ID=cds.MS.gene98470.t1;Parent=MS.gene98470.t1 |
chr5.4 | exon | 18997446 | 18997505 | 18997446 | ID=MS.gene98470.t1.exon7;Parent=MS.gene98470.t1 |
chr5.4 | CDS | 18997446 | 18997505 | 18997446 | ID=cds.MS.gene98470.t1;Parent=MS.gene98470.t1 |
chr5.4 | exon | 18995770 | 18996164 | 18995770 | ID=MS.gene98470.t1.exon8;Parent=MS.gene98470.t1 |
chr5.4 | CDS | 18995770 | 18996164 | 18995770 | ID=cds.MS.gene98470.t1;Parent=MS.gene98470.t1 |
Gene Sequence |
Protein sequence |