Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98521.t1 | Q07202.1 | 98.5 | 204 | 3 | 0 | 1 | 204 | 1 | 204 | 1.90E-23 | 119.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98521.t1 | Q07202 | 98.5 | 204 | 3 | 0 | 1 | 204 | 1 | 204 | 4.7e-26 | 119.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98521.t1 | G7K7D5 | 93.5 | 155 | 7 | 1 | 1 | 155 | 1 | 152 | 8.3e-16 | 93.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049758 | MS.gene98521 | 0.821895 | 3.17E-53 | -1.69E-46 |
| MS.gene050128 | MS.gene98521 | 0.817502 | 3.19E-52 | -1.69E-46 |
| MS.gene050406 | MS.gene98521 | 0.809313 | 2.01E-50 | -1.69E-46 |
| MS.gene050642 | MS.gene98521 | 0.804096 | 2.55E-49 | -1.69E-46 |
| MS.gene051535 | MS.gene98521 | 0.803581 | 3.26E-49 | -1.69E-46 |
| MS.gene051983 | MS.gene98521 | 0.816094 | 6.60E-52 | -1.69E-46 |
| MS.gene052340 | MS.gene98521 | 0.832733 | 7.99E-56 | -1.69E-46 |
| MS.gene053073 | MS.gene98521 | 0.85041 | 1.73E-60 | -1.69E-46 |
| MS.gene05316 | MS.gene98521 | 0.821812 | 3.31E-53 | -1.69E-46 |
| MS.gene053557 | MS.gene98521 | 0.837623 | 4.66E-57 | -1.69E-46 |
| MS.gene053836 | MS.gene98521 | 0.80937 | 1.96E-50 | -1.69E-46 |
| MS.gene053928 | MS.gene98521 | 0.805214 | 1.49E-49 | -1.69E-46 |
| MS.gene054327 | MS.gene98521 | 0.843213 | 1.61E-58 | -1.69E-46 |
| MS.gene054930 | MS.gene98521 | 0.807606 | 4.66E-50 | -1.69E-46 |
| MS.gene05553 | MS.gene98521 | 0.803096 | 4.10E-49 | -1.69E-46 |
| MS.gene056979 | MS.gene98521 | 0.802657 | 5.06E-49 | -1.69E-46 |
| MS.gene05702 | MS.gene98521 | 0.815966 | 7.05E-52 | -1.69E-46 |
| MS.gene057396 | MS.gene98521 | 0.828777 | 7.44E-55 | -1.69E-46 |
| MS.gene057449 | MS.gene98521 | 0.801105 | 1.05E-48 | -1.69E-46 |
| MS.gene057450 | MS.gene98521 | 0.808417 | 3.13E-50 | -1.69E-46 |
| MS.gene057690 | MS.gene98521 | 0.812488 | 4.13E-51 | -1.69E-46 |
| MS.gene057754 | MS.gene98521 | 0.80174 | 7.81E-49 | -1.69E-46 |
| MS.gene058002 | MS.gene98521 | 0.825488 | 4.56E-54 | -1.69E-46 |
| MS.gene058142 | MS.gene98521 | 0.806388 | 8.43E-50 | -1.69E-46 |
| MS.gene058239 | MS.gene98521 | 0.801549 | 8.54E-49 | -1.69E-46 |
| MS.gene058276 | MS.gene98521 | 0.802652 | 5.07E-49 | -1.69E-46 |
| MS.gene058435 | MS.gene98521 | 0.8101 | 1.36E-50 | -1.69E-46 |
| MS.gene059285 | MS.gene98521 | 0.810487 | 1.13E-50 | -1.69E-46 |
| MS.gene059788 | MS.gene98521 | 0.804706 | 1.90E-49 | -1.69E-46 |
| MS.gene059894 | MS.gene98521 | 0.863163 | 3.03E-64 | -1.69E-46 |
| MS.gene059899 | MS.gene98521 | 0.839651 | 1.40E-57 | -1.69E-46 |
| MS.gene060407 | MS.gene98521 | 0.810658 | 1.03E-50 | -1.69E-46 |
| MS.gene060495 | MS.gene98521 | 0.816353 | 5.78E-52 | -1.69E-46 |
| MS.gene061049 | MS.gene98521 | 0.830264 | 3.24E-55 | -1.69E-46 |
| MS.gene061112 | MS.gene98521 | 0.841538 | 4.47E-58 | -1.69E-46 |
| MS.gene061113 | MS.gene98521 | 0.8153 | 9.92E-52 | -1.69E-46 |
| MS.gene061159 | MS.gene98521 | 0.824 | 1.02E-53 | -1.69E-46 |
| MS.gene061265 | MS.gene98521 | 0.843212 | 1.61E-58 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98521.t1 | MTR_5g084470 | 62.443 | 221 | 43 | 4 | 1 | 204 | 1 | 198 | 4.46e-23 | 92.0 |
| MS.gene98521.t1 | MTR_5g084570 | 82.000 | 50 | 8 | 1 | 1 | 49 | 1 | 50 | 8.48e-21 | 85.5 |
| MS.gene98521.t1 | MTR_5g084530 | 55.429 | 175 | 33 | 3 | 1 | 174 | 1 | 131 | 3.05e-20 | 82.8 |
| MS.gene98521.t1 | MTR_5g084540 | 80.392 | 51 | 9 | 1 | 1 | 50 | 1 | 51 | 6.25e-20 | 82.8 |
| MS.gene98521.t1 | MTR_5g084530 | 94.000 | 50 | 3 | 0 | 1 | 50 | 1 | 50 | 9.57e-18 | 77.0 |
| MS.gene98521.t1 | MTR_5g084410 | 54.839 | 93 | 29 | 5 | 1 | 90 | 1 | 83 | 7.23e-11 | 57.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 99 sgRNAs with CRISPR-Local
Find 102 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTACTACCACCTCCATATT+TGG | 0.177321 | 5.2:+72160791 | None:intergenic |
| AACTTCCACTGATGCTAAAA+AGG | 0.209251 | 5.2:-72161444 | MS.gene98521:CDS |
| GTTGTAGCCACCACCATATT+TGG | 0.273817 | 5.2:+72161094 | None:intergenic |
| TTGAACAATGGATTCGAAAA+AGG | 0.281503 | 5.2:-72161537 | None:intergenic |
| GAAGTAAATGATGCCAAATA+TGG | 0.357966 | 5.2:-72160804 | MS.gene98521:CDS |
| GGTGGTTACAATGGTGGTGG+GGG | 0.404226 | 5.2:-72160969 | MS.gene98521:CDS |
| GAAGCAAATGATGCCAAATA+TGG | 0.409951 | 5.2:-72161107 | MS.gene98521:CDS |
| GGAGGTGGTTACAATGGTGG+TGG | 0.415260 | 5.2:-72160972 | MS.gene98521:CDS |
| GGTCACGGTGGTCACGGTGG+AGG | 0.419681 | 5.2:-72160948 | MS.gene98521:CDS |
| GGTGGAGGTCACGGTGGTCA+TGG | 0.421667 | 5.2:-72160870 | MS.gene98521:CDS |
| AGGTGGTTACAATGGTGGTG+GGG | 0.426416 | 5.2:-72160970 | MS.gene98521:CDS |
| CACGGTGGTCACGGTGGAGG+TGG | 0.441060 | 5.2:-72160945 | MS.gene98521:CDS |
| CACGGTGGACATGGTGGCCA+TGG | 0.451717 | 5.2:-72160696 | MS.gene98521:CDS |
| CATGCTAAGCCTCTTGGCTA+TGG | 0.452537 | 5.2:-72161507 | MS.gene98521:CDS |
| CACGGTGGACACGGTGGACA+TGG | 0.456773 | 5.2:-72160705 | MS.gene98521:CDS |
| GAGGTGGTTACAATGGTGGT+GGG | 0.460517 | 5.2:-72160971 | MS.gene98521:CDS |
| CATGGTGGCCATGGTGGTCA+CGG | 0.466257 | 5.2:-72160687 | MS.gene98521:CDS |
| CACGGTGGTCACGGTGGAGG+TGG | 0.469212 | 5.2:-72160903 | MS.gene98521:CDS |
| CACGGTGGTGGCTACAACCA+CGG | 0.484705 | 5.2:-72161038 | MS.gene98521:CDS |
| GGACACGGTGGTCACGGTGG+AGG | 0.486069 | 5.2:-72160906 | MS.gene98521:CDS |
| AATCCTCATGCTAAGCCTCT+TGG | 0.494599 | 5.2:-72161513 | MS.gene98521:CDS |
| GGTGGAGGACACGGTGGTCA+CGG | 0.494972 | 5.2:-72160912 | MS.gene98521:CDS |
| GGTGGTTACAATGGTGGTGG+AGG | 0.504299 | 5.2:-72160885 | MS.gene98521:CDS |
| TACAATGGTGGTGGAGGTCA+CGG | 0.506705 | 5.2:-72160879 | MS.gene98521:CDS |
| TTTCCTCAGTGATGTCCGCT+AGG | 0.509380 | 5.2:-72161478 | MS.gene98521:CDS |
| GGCTACAACCACGGTGGAGG+TGG | 0.510095 | 5.2:-72161029 | MS.gene98521:CDS |
| GGTGGTTACCACAATGGTGG+TGG | 0.512481 | 5.2:-72161011 | MS.gene98521:CDS |
| GGCGGTTACAACCACGGTGG+AGG | 0.514615 | 5.2:-72160990 | MS.gene98521:CDS |
| CATGGTGGTCACGGTGGACA+CGG | 0.515497 | 5.2:-72160678 | MS.gene98521:CDS |
| GGCTACAACCACGGTGGAGG+TGG | 0.515766 | 5.2:-72160750 | MS.gene98521:CDS |
| GGTGGCTACAACCACGGTGG+AGG | 0.521180 | 5.2:-72161032 | MS.gene98521:CDS |
| GGTGGCTACAACCATGGTGG+TGG | 0.524637 | 5.2:-72161083 | MS.gene98521:CDS |
| GGAGGTGGCCACGGTGGACA+CGG | 0.529064 | 5.2:-72160714 | MS.gene98521:CDS |
| GGTTACAACCACGGTGGAGG+TGG | 0.531058 | 5.2:-72160729 | MS.gene98521:CDS |
| AGTGTTGTCCTCAGTTTGCA+CGG | 0.535241 | 5.2:+72160653 | None:intergenic |
| GGTGGTTACAATGGTGGTGG+AGG | 0.535349 | 5.2:-72160927 | MS.gene98521:CDS |
| AGTAATTACAACGATGGTAG+AGG | 0.535647 | 5.2:-72160774 | MS.gene98521:CDS |
| GGTAGAGGTGGCTACAACCA+CGG | 0.539916 | 5.2:-72160759 | MS.gene98521:CDS |
| TTCCTCAGTGATGTCCGCTA+GGG | 0.540952 | 5.2:-72161477 | MS.gene98521:CDS |
| AACCACGGTGGAGGTGGCCA+CGG | 0.549270 | 5.2:-72160723 | MS.gene98521:CDS |
| TACAATGGTGGTGGAGGACA+CGG | 0.556001 | 5.2:-72160921 | MS.gene98521:CDS |
| GGAGGTGGTTACAATGGTGG+TGG | 0.559565 | 5.2:-72160888 | MS.gene98521:CDS |
| GGAGGTGGTTACAATGGTGG+TGG | 0.559565 | 5.2:-72160930 | MS.gene98521:CDS |
| GGTTACAACCACGGTGGAGG+TGG | 0.562762 | 5.2:-72160987 | MS.gene98521:CDS |
| CACGGTGGAGGTGGTTACAA+TGG | 0.563087 | 5.2:-72160894 | MS.gene98521:CDS |
| CACGGTGGAGGTGGTTACAA+TGG | 0.563087 | 5.2:-72160936 | MS.gene98521:CDS |
| GGTGGTTACAACCACGGTGG+AGG | 0.568751 | 5.2:-72160732 | MS.gene98521:CDS |
| TATGGTGGTGGCTACAACCA+TGG | 0.573559 | 5.2:-72161089 | MS.gene98521:CDS |
| GGTTACCACAATGGTGGTGG+CGG | 0.574406 | 5.2:-72161008 | MS.gene98521:CDS |
| CACGGTGGAGGTGGTTACAA+TGG | 0.582186 | 5.2:-72160978 | MS.gene98521:CDS |
| AATGATGCCAAATATGGAGG+TGG | 0.589889 | 5.2:-72160798 | MS.gene98521:CDS |
| GGAGGTTATAACCACGGTGG+TGG | 0.593426 | 5.2:-72161050 | MS.gene98521:CDS |
| GGTGGTGGTTACAATGGTGG+AGG | 0.603294 | 5.2:-72161068 | MS.gene98521:CDS |
| GGTGGCTACAACCACGGTGG+AGG | 0.603384 | 5.2:-72160753 | MS.gene98521:CDS |
| ATCTGTTACCGTGCAAACTG+AGG | 0.618883 | 5.2:-72160838 | MS.gene98521:CDS |
| CATGGTGGTGGTTACAATGG+TGG | 0.620372 | 5.2:-72161071 | MS.gene98521:CDS |
| GGTGGTGGCGGTTACAACCA+CGG | 0.630576 | 5.2:-72160996 | MS.gene98521:CDS |
| CACGGTGGAGGTGGCCACGG+TGG | 0.630965 | 5.2:-72160720 | MS.gene98521:CDS |
| AACCATGGTGGTGGTTACAA+TGG | 0.632166 | 5.2:-72161074 | MS.gene98521:CDS |
| GGTGGACATGGTGGCCATGG+TGG | 0.633718 | 5.2:-72160693 | MS.gene98521:CDS |
| TGTAACCGCCACCACCATTG+TGG | 0.638615 | 5.2:+72161003 | None:intergenic |
| GGAGGTCACGGTGGTCATGG+CGG | 0.640286 | 5.2:-72160867 | MS.gene98521:CDS |
| GGTGGCCACGGTGGACACGG+TGG | 0.642936 | 5.2:-72160711 | MS.gene98521:CDS |
| GGTGGCCATGGTGGTCACGG+TGG | 0.648775 | 5.2:-72160684 | MS.gene98521:CDS |
| AATGATGCCAAATATGGTGG+TGG | 0.651740 | 5.2:-72161101 | MS.gene98521:CDS |
| GGTGGAGGTGGTTACCACAA+TGG | 0.652457 | 5.2:-72161017 | MS.gene98521:CDS |
| AATTACAACGATGGTAGAGG+TGG | 0.652701 | 5.2:-72160771 | MS.gene98521:CDS |
| GGAGGACACGGTGGTCACGG+TGG | 0.653298 | 5.2:-72160909 | MS.gene98521:CDS |
| ACACGGTGCCGTGCAAACTG+AGG | 0.653858 | 5.2:-72160661 | MS.gene98521:CDS |
| GGTGGACACGGTGGACATGG+TGG | 0.654274 | 5.2:-72160702 | MS.gene98521:CDS |
| TAGCCAAGAGGCTTAGCATG+AGG | 0.658082 | 5.2:+72161510 | None:intergenic |
| CGTGTCCACCGTGACCACCA+TGG | 0.663650 | 5.2:+72160679 | None:intergenic |
| CACCATTGTAACCACCACCA+TGG | 0.664810 | 5.2:+72161072 | None:intergenic |
| GGTGGTAGTAATTACAACGA+TGG | 0.680382 | 5.2:-72160780 | MS.gene98521:CDS |
| GGTGGAGGTGGTTACAATGG+TGG | 0.682012 | 5.2:-72160891 | MS.gene98521:CDS |
| GGTGGAGGTGGTTACAATGG+TGG | 0.682012 | 5.2:-72160933 | MS.gene98521:CDS |
| GGTGGAGGTGGTTACAATGG+TGG | 0.682012 | 5.2:-72160975 | MS.gene98521:CDS |
| GGTGGAGGTGGTTACAACCA+CGG | 0.683488 | 5.2:-72160738 | MS.gene98521:CDS |
| CACCGTGGCCACCTCCACCG+TGG | 0.688584 | 5.2:+72160721 | None:intergenic |
| AGTTTCATTTAAGTCCCTAG+CGG | 0.691336 | 5.2:+72161463 | None:intergenic |
| GTAAATGATGCCAAATATGG+AGG | 0.695370 | 5.2:-72160801 | MS.gene98521:CDS |
| GGAGGTGGTTACCACAATGG+TGG | 0.699554 | 5.2:-72161014 | MS.gene98521:CDS |
| AAATAAGAGCCATAGCCAAG+AGG | 0.700367 | 5.2:+72161498 | None:intergenic |
| GCAAATGATGCCAAATATGG+TGG | 0.711177 | 5.2:-72161104 | MS.gene98521:CDS |
| AATGGTGGTGGAGGTCACGG+TGG | 0.715780 | 5.2:-72160876 | MS.gene98521:CDS |
| AATGGTGGAGGTTATAACCA+CGG | 0.716087 | 5.2:-72161056 | MS.gene98521:CDS |
| GGTTGTAACCACCTCCACCG+TGG | 0.717584 | 5.2:+72160742 | None:intergenic |
| TGTGGTAACCACCTCCACCG+TGG | 0.717584 | 5.2:+72161021 | None:intergenic |
| GTCCCTAGCGGACATCACTG+AGG | 0.722830 | 5.2:+72161475 | None:intergenic |
| CATGTCCACCGTGTCCACCG+TGG | 0.725749 | 5.2:+72160706 | None:intergenic |
| CATTGTAACCACCTCCACCG+TGG | 0.728784 | 5.2:+72160979 | None:intergenic |
| AATGGTGGTGGAGGACACGG+TGG | 0.730218 | 5.2:-72160918 | MS.gene98521:CDS |
| CGTGGTTGTAGCCACCACCG+TGG | 0.737277 | 5.2:+72161039 | None:intergenic |
| GGTGGTGGCTACAACCATGG+TGG | 0.749832 | 5.2:-72161086 | MS.gene98521:CDS |
| GGTGGTGGCTACAACCACGG+TGG | 0.776238 | 5.2:-72161035 | MS.gene98521:CDS |
| GGTGGCGGTTACAACCACGG+TGG | 0.777031 | 5.2:-72160993 | MS.gene98521:CDS |
| AGAGGTGGCTACAACCACGG+TGG | 0.781749 | 5.2:-72160756 | MS.gene98521:CDS |
| GGAGGTGGTTACAACCACGG+TGG | 0.797028 | 5.2:-72160735 | MS.gene98521:CDS |
| GGTGGAGGTTATAACCACGG+TGG | 0.800098 | 5.2:-72161053 | MS.gene98521:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCATTTTTTATATAATATTG+AGG | + | chr5.2:72160916-72160935 | None:intergenic | 10.0% |
| !! | GAATCTTTAAATGAATAATT+AGG | + | chr5.2:72161008-72161027 | None:intergenic | 15.0% |
| !! | AAATTATTCAAACATTACAC+CGG | - | chr5.2:72160970-72160989 | MS.gene98521:CDS | 20.0% |
| !! | GAATTATCCTTCAAAAAATT+AGG | + | chr5.2:72160823-72160842 | None:intergenic | 20.0% |
| !!! | ATTCTTTCCTAATTTTTTGA+AGG | - | chr5.2:72160813-72160832 | MS.gene98521:CDS | 20.0% |
| ! | AATTAGGAATATCAAATCAC+CGG | + | chr5.2:72160992-72161011 | None:intergenic | 25.0% |
| CATATATATTGTGTTTGCAG+AGG | - | chr5.2:72161027-72161046 | MS.gene98521:CDS | 30.0% | |
| GAAGTAAATGATGCCAAATA+TGG | - | chr5.2:72161370-72161389 | MS.gene98521:intron | 30.0% | |
| TTCAATAAGAAGTTGTTGAG+TGG | - | chr5.2:72160943-72160962 | MS.gene98521:CDS | 30.0% | |
| AACTTCCACTGATGCTAAAA+AGG | - | chr5.2:72160730-72160749 | MS.gene98521:CDS | 35.0% | |
| ACTTCCACTGATGCTAAAAA+GGG | - | chr5.2:72160731-72160750 | MS.gene98521:CDS | 35.0% | |
| AGTAATTACAACGATGGTAG+AGG | - | chr5.2:72161400-72161419 | MS.gene98521:intron | 35.0% | |
| AGTTTCATTTAAGTCCCTAG+CGG | + | chr5.2:72160714-72160733 | None:intergenic | 35.0% | |
| ATTACTACCACCTCCATATT+TGG | + | chr5.2:72161386-72161405 | None:intergenic | 35.0% | |
| GAAGCAAATGATGCCAAATA+TGG | - | chr5.2:72161067-72161086 | MS.gene98521:CDS | 35.0% | |
| GTAAATGATGCCAAATATGG+AGG | - | chr5.2:72161373-72161392 | MS.gene98521:intron | 35.0% | |
| AAATAAGAGCCATAGCCAAG+AGG | + | chr5.2:72160679-72160698 | None:intergenic | 40.0% | |
| AATGATGCCAAATATGGAGG+TGG | - | chr5.2:72161376-72161395 | MS.gene98521:intron | 40.0% | |
| AATGATGCCAAATATGGTGG+TGG | - | chr5.2:72161073-72161092 | MS.gene98521:CDS | 40.0% | |
| AATTACAACGATGGTAGAGG+TGG | - | chr5.2:72161403-72161422 | MS.gene98521:intron | 40.0% | |
| GCAAATGATGCCAAATATGG+TGG | - | chr5.2:72161070-72161089 | MS.gene98521:CDS | 40.0% | |
| GGTGGTAGTAATTACAACGA+TGG | - | chr5.2:72161394-72161413 | MS.gene98521:intron | 40.0% | |
| ! | AATGGTGGAGGTTATAACCA+CGG | - | chr5.2:72161118-72161137 | MS.gene98521:CDS | 40.0% |
| ! | AGTCTTTTCCTCAGTTTGCA+CGG | + | chr5.2:72161347-72161366 | None:intergenic | 40.0% |
| AATCCTCATGCTAAGCCTCT+TGG | - | chr5.2:72160661-72160680 | MS.gene98521:CDS | 45.0% | |
| AGTGTTGTCCTCAGTTTGCA+CGG | + | chr5.2:72161524-72161543 | None:intergenic | 45.0% | |
| ATCTGTTACCGTGCAAACTG+AGG | - | chr5.2:72161336-72161355 | MS.gene98521:intron | 45.0% | |
| GTTGTAGCCACCACCATATT+TGG | + | chr5.2:72161083-72161102 | None:intergenic | 45.0% | |
| !! | AACCATGGTGGTGGTTACAA+TGG | - | chr5.2:72161100-72161119 | MS.gene98521:CDS | 45.0% |
| !! | CTCACCCTTTTTAGCATCAG+TGG | + | chr5.2:72160738-72160757 | None:intergenic | 45.0% |
| CACCATTGTAACCACCACCA+TGG | + | chr5.2:72161105-72161124 | None:intergenic | 50.0% | |
| CATGCTAAGCCTCTTGGCTA+TGG | - | chr5.2:72160667-72160686 | MS.gene98521:CDS | 50.0% | |
| GAGGTGGTTACAATGGTGGT+GGG | - | chr5.2:72161203-72161222 | MS.gene98521:intron | 50.0% | |
| TAGCCAAGAGGCTTAGCATG+AGG | + | chr5.2:72160667-72160686 | None:intergenic | 50.0% | |
| TTCCTCAGTGATGTCCGCTA+GGG | - | chr5.2:72160697-72160716 | MS.gene98521:CDS | 50.0% | |
| TTTCCTCAGTGATGTCCGCT+AGG | - | chr5.2:72160696-72160715 | MS.gene98521:CDS | 50.0% | |
| ! | AGGTGGTTACAATGGTGGTG+GGG | - | chr5.2:72161204-72161223 | MS.gene98521:intron | 50.0% |
| !! | CATGGTGGTGGTTACAATGG+TGG | - | chr5.2:72161103-72161122 | MS.gene98521:CDS | 50.0% |
| !! | TACAATGGTGGTGGAGGACA+CGG | - | chr5.2:72161253-72161272 | MS.gene98521:intron | 50.0% |
| !! | TACAATGGTGGTGGAGGTCA+CGG | - | chr5.2:72161295-72161314 | MS.gene98521:intron | 50.0% |
| !! | TATGGTGGTGGCTACAACCA+TGG | - | chr5.2:72161085-72161104 | MS.gene98521:CDS | 50.0% |
| CACGGTGGAGGTGGTTACAA+TGG | - | chr5.2:72161196-72161215 | MS.gene98521:intron | 55.0% | |
| CATTGTAACCACCTCCACCG+TGG | + | chr5.2:72161198-72161217 | None:intergenic | 55.0% | |
| GGAGGTGGTTACAATGGTGG+TGG | - | chr5.2:72161202-72161221 | MS.gene98521:intron | 55.0% | |
| GGAGGTGGTTACCACAATGG+TGG | - | chr5.2:72161160-72161179 | MS.gene98521:intron | 55.0% | |
| GGAGGTTATAACCACGGTGG+TGG | - | chr5.2:72161124-72161143 | MS.gene98521:CDS | 55.0% | |
| GGTAGAGGTGGCTACAACCA+CGG | - | chr5.2:72161415-72161434 | MS.gene98521:intron | 55.0% | |
| GGTGGAGGTGGTTACAACCA+CGG | - | chr5.2:72161436-72161455 | MS.gene98521:intron | 55.0% | |
| GGTGGAGGTGGTTACAATGG+TGG | - | chr5.2:72161199-72161218 | MS.gene98521:intron | 55.0% | |
| GGTGGAGGTGGTTACCACAA+TGG | - | chr5.2:72161157-72161176 | MS.gene98521:intron | 55.0% | |
| GGTGGAGGTTATAACCACGG+TGG | - | chr5.2:72161121-72161140 | MS.gene98521:CDS | 55.0% | |
| GGTGGTTACCACAATGGTGG+TGG | - | chr5.2:72161163-72161182 | MS.gene98521:intron | 55.0% | |
| TGTAACCGCCACCACCATTG+TGG | + | chr5.2:72161174-72161193 | None:intergenic | 55.0% | |
| ! | GGTGGTGGTTACAATGGTGG+AGG | - | chr5.2:72161106-72161125 | MS.gene98521:CDS | 55.0% |
| !! | GGTGGTTACAATGGTGGTGG+AGG | - | chr5.2:72161205-72161224 | MS.gene98521:intron | 55.0% |
| !! | GGTGGTTACAATGGTGGTGG+GGG | - | chr5.2:72161205-72161224 | MS.gene98521:intron | 55.0% |
| !! | GGTTACCACAATGGTGGTGG+CGG | - | chr5.2:72161166-72161185 | MS.gene98521:intron | 55.0% |
| !! | TACAATGGTGGTGGGGGTCA+CGG | - | chr5.2:72161211-72161230 | MS.gene98521:intron | 55.0% |
| AGAGGTGGCTACAACCACGG+TGG | - | chr5.2:72161418-72161437 | MS.gene98521:intron | 60.0% | |
| CATGGTGGCCATGGTGGTCA+CGG | - | chr5.2:72161487-72161506 | MS.gene98521:CDS | 60.0% | |
| CATGGTGGTCACGGTGGACA+CGG | - | chr5.2:72161496-72161515 | MS.gene98521:CDS | 60.0% | |
| GGAGGTGGTTACAACCACGG+TGG | - | chr5.2:72161439-72161458 | MS.gene98521:intron | 60.0% | |
| GGTGGCTACAACCATGGTGG+TGG | - | chr5.2:72161091-72161110 | MS.gene98521:CDS | 60.0% | |
| GGTGGTTACAACCACGGTGG+AGG | - | chr5.2:72161442-72161461 | MS.gene98521:intron | 60.0% | |
| GGTTACAACCACGGTGGAGG+TGG | - | chr5.2:72161187-72161206 | MS.gene98521:intron | 60.0% | |
| GGTTGTAACCACCTCCACCG+TGG | + | chr5.2:72161435-72161454 | None:intergenic | 60.0% | |
| TGTGGTAACCACCTCCACCG+TGG | + | chr5.2:72161156-72161175 | None:intergenic | 60.0% | |
| ! | CACGGTGGTGGCTACAACCA+CGG | - | chr5.2:72161136-72161155 | MS.gene98521:intron | 60.0% |
| ! | GGTGGTGGCTACAACCATGG+TGG | - | chr5.2:72161088-72161107 | MS.gene98521:CDS | 60.0% |
| ! | GTCCCTAGCGGACATCACTG+AGG | + | chr5.2:72160702-72160721 | None:intergenic | 60.0% |
| !! | AATGGTGGTGGAGGACACGG+TGG | - | chr5.2:72161256-72161275 | MS.gene98521:intron | 60.0% |
| !! | AATGGTGGTGGAGGTCACGG+TGG | - | chr5.2:72161298-72161317 | MS.gene98521:intron | 60.0% |
| !! | ACACGGTGCCGTGCAAACTG+AGG | - | chr5.2:72161513-72161532 | MS.gene98521:CDS | 60.0% |
| !! | GGTGGTGGCGGTTACAACCA+CGG | - | chr5.2:72161178-72161197 | MS.gene98521:intron | 60.0% |
| AACCACGGTGGAGGTGGCCA+CGG | - | chr5.2:72161451-72161470 | MS.gene98521:CDS | 65.0% | |
| CACGGTGGACACGGTGGACA+TGG | - | chr5.2:72161469-72161488 | MS.gene98521:CDS | 65.0% | |
| CACGGTGGACATGGTGGCCA+TGG | - | chr5.2:72161478-72161497 | MS.gene98521:CDS | 65.0% | |
| CATGTCCACCGTGTCCACCG+TGG | + | chr5.2:72161471-72161490 | None:intergenic | 65.0% | |
| CGTGGTTGTAGCCACCACCG+TGG | + | chr5.2:72161138-72161157 | None:intergenic | 65.0% | |
| CGTGTCCACCGTGACCACCA+TGG | + | chr5.2:72161498-72161517 | None:intergenic | 65.0% | |
| GGAGGTCACGGTGGTCATGG+CGG | - | chr5.2:72161307-72161326 | MS.gene98521:intron | 65.0% | |
| GGCGGTTACAACCACGGTGG+AGG | - | chr5.2:72161184-72161203 | MS.gene98521:intron | 65.0% | |
| GGCTACAACCACGGTGGAGG+TGG | - | chr5.2:72161145-72161164 | MS.gene98521:intron | 65.0% | |
| GGTGGACACGGTGGACATGG+TGG | - | chr5.2:72161472-72161491 | MS.gene98521:CDS | 65.0% | |
| GGTGGACATGGTGGCCATGG+TGG | - | chr5.2:72161481-72161500 | MS.gene98521:CDS | 65.0% | |
| GGTGGAGGACACGGTGGTCA+CGG | - | chr5.2:72161262-72161281 | MS.gene98521:intron | 65.0% | |
| GGTGGAGGTCACGGTGGTCA+TGG | - | chr5.2:72161304-72161323 | MS.gene98521:intron | 65.0% | |
| GGTGGCTACAACCACGGTGG+AGG | - | chr5.2:72161142-72161161 | MS.gene98521:intron | 65.0% | |
| ! | GGTGGCGGTTACAACCACGG+TGG | - | chr5.2:72161181-72161200 | MS.gene98521:intron | 65.0% |
| ! | GGTGGTGGCTACAACCACGG+TGG | - | chr5.2:72161139-72161158 | MS.gene98521:intron | 65.0% |
| !! | AATGGTGGTGGGGGTCACGG+TGG | - | chr5.2:72161214-72161233 | MS.gene98521:intron | 65.0% |
| CACGGTGGTCACGGTGGAGG+TGG | - | chr5.2:72161229-72161248 | MS.gene98521:intron | 70.0% | |
| GGACACGGTGGTCACGGTGG+AGG | - | chr5.2:72161268-72161287 | MS.gene98521:intron | 70.0% | |
| GGAGGACACGGTGGTCACGG+TGG | - | chr5.2:72161265-72161284 | MS.gene98521:intron | 70.0% | |
| GGAGGTGGCCACGGTGGACA+CGG | - | chr5.2:72161460-72161479 | MS.gene98521:CDS | 70.0% | |
| GGTCACGGTGGTCACGGTGG+AGG | - | chr5.2:72161226-72161245 | MS.gene98521:intron | 70.0% | |
| GGTGGCCATGGTGGTCACGG+TGG | - | chr5.2:72161490-72161509 | MS.gene98521:CDS | 70.0% | |
| GGTGGGGGTCACGGTGGTCA+CGG | - | chr5.2:72161220-72161239 | MS.gene98521:intron | 70.0% | |
| CACCGTGGCCACCTCCACCG+TGG | + | chr5.2:72161456-72161475 | None:intergenic | 75.0% | |
| CACGGTGGAGGTGGCCACGG+TGG | - | chr5.2:72161454-72161473 | MS.gene98521:CDS | 75.0% | |
| GGGGGTCACGGTGGTCACGG+TGG | - | chr5.2:72161223-72161242 | MS.gene98521:intron | 75.0% | |
| GGTGGCCACGGTGGACACGG+TGG | - | chr5.2:72161463-72161482 | MS.gene98521:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 72160644 | 72161552 | 72160644 | ID=MS.gene98521 |
| chr5.2 | mRNA | 72160644 | 72161552 | 72160644 | ID=MS.gene98521.t1;Parent=MS.gene98521 |
| chr5.2 | exon | 72161444 | 72161552 | 72161444 | ID=MS.gene98521.t1.exon1;Parent=MS.gene98521.t1 |
| chr5.2 | CDS | 72161444 | 72161552 | 72161444 | ID=cds.MS.gene98521.t1;Parent=MS.gene98521.t1 |
| chr5.2 | exon | 72160644 | 72161149 | 72160644 | ID=MS.gene98521.t1.exon2;Parent=MS.gene98521.t1 |
| chr5.2 | CDS | 72160644 | 72161149 | 72160644 | ID=cds.MS.gene98521.t1;Parent=MS.gene98521.t1 |
| Gene Sequence |
| Protein sequence |
