AlfalfaGEDB | MS.gene98521

M. sativa cultivar XinJiangDaYe / MS.gene98521

KEGG: -
GO: -
PFAM: PF07172.14

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene98521.t1	Q07202.1	98.5	204	3	0	1	204	1	204	1.90E-23	119.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene98521.t1	Q07202	98.5	204	3	0	1	204	1	204	4.7e-26	119.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene98521.t1	G7K7D5	93.5	155	7	1	1	155	1	152	8.3e-16	93.6

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049758	MS.gene98521	0.821895	3.17E-53	-1.69E-46
MS.gene050128	MS.gene98521	0.817502	3.19E-52	-1.69E-46
MS.gene050406	MS.gene98521	0.809313	2.01E-50	-1.69E-46
MS.gene050642	MS.gene98521	0.804096	2.55E-49	-1.69E-46
MS.gene051535	MS.gene98521	0.803581	3.26E-49	-1.69E-46
MS.gene051983	MS.gene98521	0.816094	6.60E-52	-1.69E-46
MS.gene052340	MS.gene98521	0.832733	7.99E-56	-1.69E-46
MS.gene053073	MS.gene98521	0.85041	1.73E-60	-1.69E-46
MS.gene05316	MS.gene98521	0.821812	3.31E-53	-1.69E-46
MS.gene053557	MS.gene98521	0.837623	4.66E-57	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene98521.t1	MTR_5g084470	62.443	221	43	4	1	204	1	198	4.46e-23	92.0
MS.gene98521.t1	MTR_5g084570	82.000	50	8	1	1	49	1	50	8.48e-21	85.5
MS.gene98521.t1	MTR_5g084530	55.429	175	33	3	1	174	1	131	3.05e-20	82.8
MS.gene98521.t1	MTR_5g084540	80.392	51	9	1	1	50	1	51	6.25e-20	82.8
MS.gene98521.t1	MTR_5g084530	94.000	50	3	0	1	50	1	50	9.57e-18	77.0
MS.gene98521.t1	MTR_5g084410	54.839	93	29	5	1	90	1	83	7.23e-11	57.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 99 sgRNAs with CRISPR-Local

Find 102 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATAAGAGCCATAGCCAAG+AGG	0.700367	5.2:+72161498	None:intergenic
AACCACGGTGGAGGTGGCCA+CGG	0.549270	5.2:-72160723	MS.gene98521:CDS
AACCATGGTGGTGGTTACAA+TGG	0.632166	5.2:-72161074	MS.gene98521:CDS
AACTTCCACTGATGCTAAAA+AGG	0.209251	5.2:-72161444	MS.gene98521:CDS
AATCCTCATGCTAAGCCTCT+TGG	0.494599	5.2:-72161513	MS.gene98521:CDS
AATGATGCCAAATATGGAGG+TGG	0.589889	5.2:-72160798	MS.gene98521:CDS
AATGATGCCAAATATGGTGG+TGG	0.651740	5.2:-72161101	MS.gene98521:CDS
AATGGTGGAGGTTATAACCA+CGG	0.716087	5.2:-72161056	MS.gene98521:CDS
AATGGTGGTGGAGGACACGG+TGG	0.730218	5.2:-72160918	MS.gene98521:CDS
AATGGTGGTGGAGGTCACGG+TGG	0.715780	5.2:-72160876	MS.gene98521:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CATATATATTGTGTTTGCAG+AGG	-	chr5.2:72161027-72161046	MS.gene98521:CDS	30.0%
GAAGTAAATGATGCCAAATA+TGG	-	chr5.2:72161370-72161389	MS.gene98521:intron	30.0%
TTCAATAAGAAGTTGTTGAG+TGG	-	chr5.2:72160943-72160962	MS.gene98521:CDS	30.0%
AACTTCCACTGATGCTAAAA+AGG	-	chr5.2:72160730-72160749	MS.gene98521:CDS	35.0%
ACTTCCACTGATGCTAAAAA+GGG	-	chr5.2:72160731-72160750	MS.gene98521:CDS	35.0%
AGTAATTACAACGATGGTAG+AGG	-	chr5.2:72161400-72161419	MS.gene98521:intron	35.0%
AGTTTCATTTAAGTCCCTAG+CGG	+	chr5.2:72160714-72160733	None:intergenic	35.0%
ATTACTACCACCTCCATATT+TGG	+	chr5.2:72161386-72161405	None:intergenic	35.0%
GAAGCAAATGATGCCAAATA+TGG	-	chr5.2:72161067-72161086	MS.gene98521:CDS	35.0%
GTAAATGATGCCAAATATGG+AGG	-	chr5.2:72161373-72161392	MS.gene98521:intron	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.2	gene	72160644	72161552	72160644	ID=MS.gene98521
chr5.2	mRNA	72160644	72161552	72160644	ID=MS.gene98521.t1;Parent=MS.gene98521
chr5.2	exon	72161444	72161552	72161444	ID=MS.gene98521.t1.exon1;Parent=MS.gene98521.t1
chr5.2	CDS	72161444	72161552	72161444	ID=cds.MS.gene98521.t1;Parent=MS.gene98521.t1
chr5.2	exon	72160644	72161149	72160644	ID=MS.gene98521.t1.exon2;Parent=MS.gene98521.t1
chr5.2	CDS	72160644	72161149	72160644	ID=cds.MS.gene98521.t1;Parent=MS.gene98521.t1

Gene Sequence

>MS.gene98521

ATGGATTCGAAAAAGGCAATCCTCATGCTAAGCCTCTTGGCTATGGCTCTTATTTCCTCAGTGATGTCCGCTAGGGACTTAAATGAAACTTCCACTGATGCTAAAAAGGGTGAGCTATATATTATGTTCTTTATATATGTTTTCATGAGCGTTTTAGATATATGTTTTAATTCTTTCCTAATTTTTTGAAGGATAATTCTTTAATACTTAATTATATATTTTATGCATTTTAATTAATTCTTTTCTTTGTAAACGTTAATCTTCATGCACCTCAATATTATATAAAAAATGATTATATATTCAATAAGAAGTTGTTGAGTGGTGTAAAATTATTCAAACATTACACCGGTGATTTGATATTCCTAATTATTCATTTAAAGATTCATATATATTGTGTTTGCAGAGGTTGTTGAAAAGACTAATGAAGCAAATGATGCCAAATATGGTGGTGGCTACAACCATGGTGGTGGTTACAATGGTGGAGGTTATAACCACGGTGGTGGCTACAACCACGGTGGAGGTGGTTACCACAATGGTGGTGGCGGTTACAACCACGGTGGAGGTGGTTACAATGGTGGTGGGGGTCACGGTGGTCACGGTGGAGGTGGTTACAATGGTGGTGGAGGACACGGTGGTCACGGTGGAGGTGGTTACAATGGTGGTGGAGGTCACGGTGGTCATGGCGGTGCTGAATCTGTTACCGTGCAAACTGAGGAAAAGACTAATGAAGTAAATGATGCCAAATATGGAGGTGGTAGTAATTACAACGATGGTAGAGGTGGCTACAACCACGGTGGAGGTGGTTACAACCACGGTGGAGGTGGCCACGGTGGACACGGTGGACATGGTGGCCATGGTGGTCACGGTGGACACGGTGCCGTGCAAACTGAGGACAACACTCAAAACTGA

Protein sequence

>MS.gene98521.t1

MDSKKAILMLSLLAMALISSVMSARDLNETSTDAKKEVVEKTNEANDAKYGGGYNHGGGYNGGGYNHGGGYNHGGGGYHNGGGGYNHGGGGYNGGGGHGGHGGGGYNGGGGHGGHGGGGYNGGGGHGGHGGAESVTVQTEEKTNEVNDAKYGGGSNYNDGRGGYNHGGGGYNHGGGGHGGHGGHGGHGGHGGHGAVQTEDNTQN