AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180005026.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005026.01.T01 MTR_1g091037 47.783 406 83 8 22 340 105 468 1.28e-74 244
MsG0180005026.01.T01 MTR_1g091037 47.783 406 83 8 22 340 113 476 1.97e-74 244
MsG0180005026.01.T01 MTR_8g018770 38.843 121 69 3 146 265 128 244 1.20e-13 72.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005026.01.T01 AT3G52200 34.085 399 151 16 22 341 116 481 1.28e-34 135
MsG0180005026.01.T01 AT3G52200 34.586 399 149 17 22 341 192 557 1.81e-34 135
MsG0180005026.01.T01 AT1G54220 29.225 284 123 9 146 353 125 406 1.55e-17 84.7
MsG0180005026.01.T01 AT1G54220 29.225 284 123 9 146 353 125 406 1.55e-17 84.7
MsG0180005026.01.T01 AT3G13930 50.617 81 37 2 146 225 125 203 7.21e-14 73.6

Find 68 sgRNAs with CRISPR-Local

Find 399 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCTTACTGTTGAAGTTAA+AGG 0.209303 1:+85854548 MsG0180005026.01.T01:CDS
ATACCTTTAGATCCTTTCTA+AGG 0.240486 1:-85859163 None:intergenic
TTTGGATGACCTGCAGATTT+TGG 0.253753 1:+85856209 MsG0180005026.01.T01:CDS
AACTGTTTACCATTCGCTTC+TGG 0.264341 1:-85859354 None:intergenic
GTATTTACCTTAATTATCTT+AGG 0.280803 1:+85859405 MsG0180005026.01.T01:CDS
TGTTGGGTGGTCTCTCCTTT+TGG 0.280868 1:-85858212 None:intergenic
ACACTTACTGTTATTGCAAT+AGG 0.308240 1:-85857929 None:intergenic
TAAAATGTGTTGTAGTGATT+TGG 0.324046 1:+85856191 MsG0180005026.01.T01:intron
TCTAACACCTAAGATAATTA+AGG 0.346380 1:-85859412 None:intergenic
GTCTAAAGTAACCGCAATTA+AGG 0.348493 1:-85860144 None:intergenic
GGTGCTGGAGGCTGCGATAA+AGG 0.363539 1:-85860169 None:intergenic
TTTCTCTCTGGAGGGACTCT+AGG 0.383400 1:+85856333 MsG0180005026.01.T01:CDS
TCAGTTGCTCAGCACCTTCT+GGG 0.387919 1:-85859450 None:intergenic
TCCTCTTCTTTCCCTTAGAA+AGG 0.394886 1:+85859151 MsG0180005026.01.T01:CDS
TCTTCAGACTTTCAAATTCA+AGG 0.398919 1:-85857391 None:intergenic
GCTTACATGATCAAATATTT+CGG 0.401006 1:-85856838 None:intergenic
CAGCACCTTTGTGCTAGATA+TGG 0.408630 1:+85860185 MsG0180005026.01.T01:CDS
ATTGCAATCTGTTGTCCAAC+GGG 0.410074 1:-85856267 None:intergenic
AGTTGTGTGAGTTGACTTAC+TGG 0.412158 1:-85856295 None:intergenic
TCAAATGTTCCTGCTTCTGT+GGG 0.417924 1:+85856902 MsG0180005026.01.T01:CDS
TTCAAATGTTCCTGCTTCTG+TGG 0.418269 1:+85856901 MsG0180005026.01.T01:CDS
GGCTAAGATATTGGTACTGA+TGG 0.435805 1:+85856230 MsG0180005026.01.T01:CDS
TTCCCTTAGAAAGGATCTAA+AGG 0.441768 1:+85859160 MsG0180005026.01.T01:CDS
GCAATTAAGGCGGCTGGAAG+TGG 0.441840 1:-85860131 None:intergenic
AAAATTAGCAACTTTGCAGC+TGG 0.442890 1:-85858287 None:intergenic
TAAGGTAAATACAACACAAA+TGG 0.450120 1:-85859394 None:intergenic
ACCTGCTTCATCTAAAGAAA+AGG 0.464759 1:+85858414 MsG0180005026.01.T01:CDS
TTGAATTTGAAAGTCTGAAG+AGG 0.475889 1:+85857393 MsG0180005026.01.T01:CDS
CATATCTAGCACAAAGGTGC+TGG 0.479161 1:-85860184 None:intergenic
GAATTTGAAAGTCTTGAAGA+AGG 0.486562 1:+85854468 MsG0180005026.01.T01:CDS
AAATGTTCCTGCTTCTGTGG+GGG 0.496201 1:+85856904 MsG0180005026.01.T01:CDS
TTAAAGGCCATCCAGTACTT+AGG 0.499446 1:-85854504 None:intergenic
ATCTTAGGTGTTAGAACTAG+TGG 0.504530 1:+85859420 MsG0180005026.01.T01:CDS
CAGCAGCTCAGTAAACCAAA+AGG 0.507674 1:+85858197 MsG0180005026.01.T01:CDS
GTAACCGCAATTAAGGCGGC+TGG 0.515825 1:-85860137 None:intergenic
CTTCAGACTTTCAAATTCAA+GGG 0.517765 1:-85857390 None:intergenic
AATGTTCCTGCTTCTGTGGG+GGG 0.520690 1:+85856905 MsG0180005026.01.T01:CDS
TGAATTTGAAAGTCTGAAGA+GGG 0.527519 1:+85857394 MsG0180005026.01.T01:CDS
ATATCTTAGCCAAAATCTGC+AGG 0.538639 1:-85856218 None:intergenic
TACCTTTAGATCCTTTCTAA+GGG 0.540259 1:-85859162 None:intergenic
TATTGGTACTGATGGTTCAA+AGG 0.545275 1:+85856238 MsG0180005026.01.T01:CDS
TTTGATCATGTAAGCTCTAA+CGG 0.549082 1:+85856846 MsG0180005026.01.T01:CDS
AATTTGAAAGTCTTGAAGAA+GGG 0.551670 1:+85854469 MsG0180005026.01.T01:CDS
TATTGCAATCTGTTGTCCAA+CGG 0.555842 1:-85856268 None:intergenic
ATCTAGCACAAAGGTGCTGG+AGG 0.556664 1:-85860181 None:intergenic
CGGTGAGCTTGACAAGGTTG+AGG 0.556890 1:+85856866 MsG0180005026.01.T01:CDS
GGTTCAAAAGAAGTGGCAGT+TGG 0.561363 1:+85857902 MsG0180005026.01.T01:CDS
CTGGTGCAACTATCTTAGCT+AGG 0.563129 1:-85857877 None:intergenic
CAAATGTTCCTGCTTCTGTG+GGG 0.568800 1:+85856903 MsG0180005026.01.T01:CDS
CTCTAACGGTGAGCTTGACA+AGG 0.572158 1:+85856860 MsG0180005026.01.T01:CDS
ACTTCCAGCCGCCTTAATTG+CGG 0.578333 1:+85860133 MsG0180005026.01.T01:CDS
TCCAAACTTACGTACTACTT+AGG 0.579617 1:-85860208 None:intergenic
ACCAGAAGGTTCAAAAGAAG+TGG 0.586438 1:+85857895 MsG0180005026.01.T01:CDS
ATTATCTAATAGATTGAAGT+GGG 0.589807 1:+85857329 MsG0180005026.01.T01:intron
GTTCAAAGGATGTTGCCCGT+TGG 0.596013 1:+85856252 MsG0180005026.01.T01:CDS
AATTATCTAATAGATTGAAG+TGG 0.600966 1:+85857328 MsG0180005026.01.T01:intron
TGTAAGATTAAACAGTAGCA+AGG 0.607734 1:-85854394 None:intergenic
GCTAAGATAGTTGCACCAGA+AGG 0.613963 1:+85857881 MsG0180005026.01.T01:CDS
GGTGTTAGAACTAGTGGTGA+CGG 0.635640 1:+85859426 MsG0180005026.01.T01:CDS
ATCTAATAGATTGAAGTGGG+TGG 0.636835 1:+85857332 MsG0180005026.01.T01:intron
TTTAATCTTACAGATAGCAG+TGG 0.637140 1:+85854405 MsG0180005026.01.T01:CDS
GAATGTGTCAGATGTTACAC+TGG 0.651891 1:+85859127 MsG0180005026.01.T01:intron
TAAAGTAACCGCAATTAAGG+CGG 0.654631 1:-85860141 None:intergenic
TCCTTTCTAAGGGAAAGAAG+AGG 0.661118 1:-85859152 None:intergenic
GTTGTGTGAGTTGACTTACT+GGG 0.668507 1:-85856294 None:intergenic
GAATTTGAAAGTCTGAAGAG+GGG 0.690809 1:+85857395 MsG0180005026.01.T01:CDS
CTAGTGGTGACGGACCCAGA+AGG 0.719683 1:+85859436 MsG0180005026.01.T01:CDS
TTAGGCCATATCTAGCACAA+AGG 0.741025 1:-85860190 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATTAATATAAATTTTTAT+TGG + Chr1:85859105-85859124 MsG0180005026.01.T01:intron 0.0%
!! AATTTCAAAATACATTAAAA+AGG - Chr1:85857237-85857256 None:intergenic 10.0%
!!! TCAGTTTTTAAATATAAATA+AGG + Chr1:85858558-85858577 MsG0180005026.01.T01:intron 10.0%
!!! TTTATTTATTTTTAGCTTAT+AGG + Chr1:85855657-85855676 MsG0180005026.01.T01:intron 10.0%
!! ATTTAAAAACTGAATATTTG+AGG - Chr1:85858551-85858570 None:intergenic 15.0%
!! GTAAATTAACCAATAAATTA+CGG - Chr1:85858057-85858076 None:intergenic 15.0%
!! TAACACCAATTTATTAAATT+GGG - Chr1:85856648-85856667 None:intergenic 15.0%
!! TTAACACCAATTTATTAAAT+TGG - Chr1:85856649-85856668 None:intergenic 15.0%
!! TTATAATTAGCAATATCAAA+AGG - Chr1:85857705-85857724 None:intergenic 15.0%
!! TTTAAAAACTGAATATTTGA+GGG - Chr1:85858550-85858569 None:intergenic 15.0%
!!! TGTTATTAAACAACATTTTT+AGG + Chr1:85857498-85857517 MsG0180005026.01.T01:intron 15.0%
!!! TTTGAAATTTTAAAATGTGA+AGG + Chr1:85857248-85857267 MsG0180005026.01.T01:intron 15.0%
!! AAAAATTGAAAATCATTTCG+TGG - Chr1:85857122-85857141 None:intergenic 20.0%
!! AAATCAGTTCAATTATAGTA+AGG - Chr1:85856121-85856140 None:intergenic 20.0%
!! AATCAGTTCAATTATAGTAA+GGG - Chr1:85856120-85856139 None:intergenic 20.0%
!! AATCCAATATAATCTTGATT+TGG + Chr1:85859247-85859266 MsG0180005026.01.T01:intron 20.0%
!! AATTATCTAATAGATTGAAG+TGG + Chr1:85857328-85857347 MsG0180005026.01.T01:intron 20.0%
!! ATACAATTAGGATCAATATT+AGG - Chr1:85858746-85858765 None:intergenic 20.0%
!! ATTATCTAATAGATTGAAGT+GGG + Chr1:85857329-85857348 MsG0180005026.01.T01:intron 20.0%
!! CAAATGGATAGAAAAATAAT+AGG - Chr1:85859381-85859400 None:intergenic 20.0%
!! GATAATTAGATGTTAATTCA+TGG - Chr1:85857315-85857334 None:intergenic 20.0%
!! GTATTTACCTTAATTATCTT+AGG + Chr1:85859405-85859424 MsG0180005026.01.T01:CDS 20.0%
!! TAAGATATAATACAAAGCAT+TGG + Chr1:85860072-85860091 MsG0180005026.01.T01:intron 20.0%
!! TTCTTCCCAATTTAATAAAT+TGG + Chr1:85856640-85856659 MsG0180005026.01.T01:intron 20.0%
!! TTTCTTTCATACTTTATTGA+AGG - Chr1:85857658-85857677 None:intergenic 20.0%
!!! AAGTACGAAAGTATTAAAAA+GGG + Chr1:85858640-85858659 MsG0180005026.01.T01:intron 20.0%
!!! AATATTTTTGACTGTTTTGT+AGG + Chr1:85858967-85858986 MsG0180005026.01.T01:intron 20.0%
!!! ACACCATAAAGTAAATTTTT+TGG - Chr1:85855038-85855057 None:intergenic 20.0%
!!! ACCATAAAGTAAATTTTTTG+GGG - Chr1:85855036-85855055 None:intergenic 20.0%
!!! ATCAATTTTCCTAAGTATTT+AGG - Chr1:85858902-85858921 None:intergenic 20.0%
!!! CACCATAAAGTAAATTTTTT+GGG - Chr1:85855037-85855056 None:intergenic 20.0%
!!! GTAATGTTTTTGTTCTATTA+TGG + Chr1:85858844-85858863 MsG0180005026.01.T01:intron 20.0%
!!! TGACTGATATTAATTTTTCA+TGG + Chr1:85859185-85859204 MsG0180005026.01.T01:intron 20.0%
!!! TGTATATTTTTGAAGCTTAA+CGG + Chr1:85859886-85859905 MsG0180005026.01.T01:intron 20.0%
!!! TTAGGAAAATTGATAGTTAA+TGG + Chr1:85858908-85858927 MsG0180005026.01.T01:intron 20.0%
!!! TTTTATATATCTTACACTCT+AGG - Chr1:85856148-85856167 None:intergenic 20.0%
! AAAAAAGAGAGGTTTGTATT+TGG - Chr1:85855599-85855618 None:intergenic 25.0%
! AAATAGATTTCTGTCTTACT+AGG - Chr1:85854770-85854789 None:intergenic 25.0%
! AACATTCACAGTAATGTATA+CGG - Chr1:85859527-85859546 None:intergenic 25.0%
! AAGGATATTGTGTATGTAAA+AGG - Chr1:85855126-85855145 None:intergenic 25.0%
! AAGTATTAAAAAGGGACTAA+AGG + Chr1:85858648-85858667 MsG0180005026.01.T01:intron 25.0%
! AATAAAACAACAAAACTCCT+TGG - Chr1:85856614-85856633 None:intergenic 25.0%
! AATGAATGACTACAATTCAA+GGG - Chr1:85855937-85855956 None:intergenic 25.0%
! AATTTGAAAGTCTTGAAGAA+GGG + Chr1:85854469-85854488 MsG0180005026.01.T01:CDS 25.0%
! AGTTACAAGTAGCATTAAAA+TGG - Chr1:85857077-85857096 None:intergenic 25.0%
! ATAAAACAACAAAACTCCTT+GGG - Chr1:85856613-85856632 None:intergenic 25.0%
! ATACTTTCGTACTTCTTATT+TGG - Chr1:85858634-85858653 None:intergenic 25.0%
! CAGAATGTTTCAAACTATAT+GGG - Chr1:85859733-85859752 None:intergenic 25.0%
! GAAAAAATGTGATTTCAACA+TGG - Chr1:85859968-85859987 None:intergenic 25.0%
! GCTAAATGGAATAAAAAAGA+AGG + Chr1:85857166-85857185 MsG0180005026.01.T01:intron 25.0%
! GCTTACATGATCAAATATTT+CGG - Chr1:85856841-85856860 None:intergenic 25.0%
! GGAACACAGAATAAATAAAA+CGG - Chr1:85857294-85857313 None:intergenic 25.0%
! GTTAGTATAAGTATGAACAA+AGG - Chr1:85855782-85855801 None:intergenic 25.0%
! GTTCTTATAACCATACTTAA+AGG + Chr1:85855056-85855075 MsG0180005026.01.T01:intron 25.0%
! TAAAAAACTGGTCAGTAATT+TGG - Chr1:85857730-85857749 None:intergenic 25.0%
! TAAAATGTGTTGTAGTGATT+TGG + Chr1:85856191-85856210 MsG0180005026.01.T01:intron 25.0%
! TAAGGTAAATACAACACAAA+TGG - Chr1:85859397-85859416 None:intergenic 25.0%
! TAGTAGAGATGTAAATAGAA+AGG - Chr1:85858879-85858898 None:intergenic 25.0%
! TATGTAAAAGGATACAAGAT+CGG - Chr1:85855114-85855133 None:intergenic 25.0%
! TCAGAATGTTTCAAACTATA+TGG - Chr1:85859734-85859753 None:intergenic 25.0%
! TCTAACACCTAAGATAATTA+AGG - Chr1:85859415-85859434 None:intergenic 25.0%
! TCTTGTTCAACTTCAAATTT+AGG + Chr1:85855081-85855100 MsG0180005026.01.T01:intron 25.0%
! TGACATTATTAATTTCTGTC+TGG - Chr1:85856452-85856471 None:intergenic 25.0%
! TGGCAGATTAAAAAACATAA+AGG - Chr1:85856551-85856570 None:intergenic 25.0%
! TTAATTGTAATGCTACATAG+TGG - Chr1:85856174-85856193 None:intergenic 25.0%
! TTTCTTACTGTTGAAGTTAA+AGG + Chr1:85854548-85854567 MsG0180005026.01.T01:CDS 25.0%
!! AATGTTAAGCTTTAATACAC+TGG - Chr1:85855201-85855220 None:intergenic 25.0%
!! AGTAGGAGAAATATTTTTCT+AGG - Chr1:85854984-85855003 None:intergenic 25.0%
!! CTTCTGTACTTTATATGTTT+TGG + Chr1:85855975-85855994 MsG0180005026.01.T01:intron 25.0%
!! TCAAAAATATTTGAGATGAG+TGG - Chr1:85858958-85858977 None:intergenic 25.0%
!!! AAAAGCAAAGAGTATCAATT+TGG - Chr1:85858079-85858098 None:intergenic 25.0%
!!! AAGTTGCTAATTTTGGAATA+TGG + Chr1:85858296-85858315 MsG0180005026.01.T01:intron 25.0%
!!! AATACAAACCTCTCTTTTTT+TGG + Chr1:85855599-85855618 MsG0180005026.01.T01:intron 25.0%
!!! ATACAAACCTCTCTTTTTTT+GGG + Chr1:85855600-85855619 MsG0180005026.01.T01:intron 25.0%
!!! ATCAAAACTTTAAGATTACC+TGG + Chr1:85855854-85855873 MsG0180005026.01.T01:intron 25.0%
!!! ATGTTATTTCTTATGCCTAT+TGG + Chr1:85856054-85856073 MsG0180005026.01.T01:intron 25.0%
!!! ATTTTTTTCTTCCTAAGTAC+TGG + Chr1:85854493-85854512 MsG0180005026.01.T01:CDS 25.0%
!!! CATATTGTTTTGGTAATACT+TGG + Chr1:85858792-85858811 MsG0180005026.01.T01:intron 25.0%
!!! CATTTTAGAACATCGAATAT+AGG - Chr1:85855344-85855363 None:intergenic 25.0%
!!! CCATAAAGTAAATTTTTTGG+GGG - Chr1:85855035-85855054 None:intergenic 25.0%
!!! GAAGTACGAAAGTATTAAAA+AGG + Chr1:85858639-85858658 MsG0180005026.01.T01:intron 25.0%
!!! TAATACGTGCTTTAAGAAAA+GGG - Chr1:85854835-85854854 None:intergenic 25.0%
!!! TGTTATTTCTTATGCCTATT+GGG + Chr1:85856055-85856074 MsG0180005026.01.T01:intron 25.0%
AAAACTTGGTCGAATCAATA+CGG - Chr1:85855560-85855579 None:intergenic 30.0%
AAACACATATTCACAGTGAA+AGG - Chr1:85857446-85857465 None:intergenic 30.0%
AAACACTTCAGTAAGATATC+AGG - Chr1:85857608-85857627 None:intergenic 30.0%
AAACACTTCAGTCAACAATT+CGG - Chr1:85859551-85859570 None:intergenic 30.0%
AAACTGTATTACTCCAAAGA+TGG - Chr1:85854667-85854686 None:intergenic 30.0%
AACAGATATATAGACCCAAT+AGG - Chr1:85856072-85856091 None:intergenic 30.0%
AAGAATAAGAATGGGGAATT+AGG + Chr1:85859909-85859928 MsG0180005026.01.T01:intron 30.0%
AAGACTTGAGGCATATAATA+TGG + Chr1:85857560-85857579 MsG0180005026.01.T01:intron 30.0%
AATAATATGCACGACATAAG+GGG - Chr1:85859060-85859079 None:intergenic 30.0%
ACACTTACTGTTATTGCAAT+AGG - Chr1:85857932-85857951 None:intergenic 30.0%
ACCTGATGATAATATAAGTG+TGG - Chr1:85859031-85859050 None:intergenic 30.0%
AGACTTGAGGCATATAATAT+GGG + Chr1:85857561-85857580 MsG0180005026.01.T01:intron 30.0%
ATAAAGTATGAAAGAAACCC+AGG + Chr1:85857661-85857680 MsG0180005026.01.T01:intron 30.0%
ATACCTTTAGATCCTTTCTA+AGG - Chr1:85859166-85859185 None:intergenic 30.0%
ATGATTCTAACCTACAATTC+TGG + Chr1:85856797-85856816 MsG0180005026.01.T01:intron 30.0%
ATGCAGTGAAAAATAAGCAA+GGG - Chr1:85855424-85855443 None:intergenic 30.0%
ATGCTGAATTCACTATATAG+AGG - Chr1:85858775-85858794 None:intergenic 30.0%
ATGCTTAAAAGGAAAACCTA+CGG - Chr1:85855320-85855339 None:intergenic 30.0%
ATGTTTACTTCCAACATTAC+TGG + Chr1:85856403-85856422 MsG0180005026.01.T01:intron 30.0%
CAATAATATGCACGACATAA+GGG - Chr1:85859061-85859080 None:intergenic 30.0%
CAATGAATGACTACAATTCA+AGG - Chr1:85855938-85855957 None:intergenic 30.0%
CAATGTAAGATCGATAAATG+GGG - Chr1:85855178-85855197 None:intergenic 30.0%
CCCCCAAAAAATTTACTTTA+TGG + Chr1:85855032-85855051 MsG0180005026.01.T01:intron 30.0%
CTTAACGGAAGAATAAGAAT+GGG + Chr1:85859901-85859920 MsG0180005026.01.T01:intron 30.0%
CTTCAGACTTTCAAATTCAA+GGG - Chr1:85857393-85857412 None:intergenic 30.0%
GAATAAAAAAGAAGGAGACA+AGG + Chr1:85857174-85857193 MsG0180005026.01.T01:intron 30.0%
GAATTTGAAAGTCTTGAAGA+AGG + Chr1:85854468-85854487 MsG0180005026.01.T01:CDS 30.0%
GATGATGTTCCGTAATTTAT+TGG + Chr1:85858045-85858064 MsG0180005026.01.T01:intron 30.0%
GCAATGTAAGATCGATAAAT+GGG - Chr1:85855179-85855198 None:intergenic 30.0%
GGACCAAATCAAGATTATAT+TGG - Chr1:85859253-85859272 None:intergenic 30.0%
GGATAAATTGCAAGTTTCAT+TGG - Chr1:85856571-85856590 None:intergenic 30.0%
GTTCTTTCTGCAATTAAATC+AGG + Chr1:85858376-85858395 MsG0180005026.01.T01:intron 30.0%
TACCTTTAGATCCTTTCTAA+GGG - Chr1:85859165-85859184 None:intergenic 30.0%
TAGCAATATCAAAAGGAAAG+AGG - Chr1:85857698-85857717 None:intergenic 30.0%
TCAAAATGTCAGACATAAGT+TGG - Chr1:85857846-85857865 None:intergenic 30.0%
TCAAGTAGTATAAACTCATC+TGG + Chr1:85859612-85859631 MsG0180005026.01.T01:intron 30.0%
TCTCTACTACCTAAATACTT+AGG + Chr1:85858890-85858909 MsG0180005026.01.T01:intron 30.0%
TCTTCAGACTTTCAAATTCA+AGG - Chr1:85857394-85857413 None:intergenic 30.0%
TGAATTTGAAAGTCTGAAGA+GGG + Chr1:85857394-85857413 MsG0180005026.01.T01:CDS 30.0%
TGAGACTAAAACATTAGTGT+CGG + Chr1:85855823-85855842 MsG0180005026.01.T01:intron 30.0%
TGTAAGATTAAACAGTAGCA+AGG - Chr1:85854397-85854416 None:intergenic 30.0%
TTAACGGAAGAATAAGAATG+GGG + Chr1:85859902-85859921 MsG0180005026.01.T01:intron 30.0%
TTAGCTATAGCTAGATCAAA+AGG + Chr1:85854852-85854871 MsG0180005026.01.T01:intron 30.0%
TTAGCTTAGGAAATATCAGT+AGG - Chr1:85855001-85855020 None:intergenic 30.0%
TTGAATTTGAAAGTCTGAAG+AGG + Chr1:85857393-85857412 MsG0180005026.01.T01:CDS 30.0%
TTTAATCTTACAGATAGCAG+TGG + Chr1:85854405-85854424 MsG0180005026.01.T01:CDS 30.0%
TTTACAACCAACGTAAAACT+TGG - Chr1:85855574-85855593 None:intergenic 30.0%
TTTAGATTCCAATAACCTCT+TGG - Chr1:85858999-85859018 None:intergenic 30.0%
TTTCACTGTGAATATGTGTT+TGG + Chr1:85857445-85857464 MsG0180005026.01.T01:intron 30.0%
! AAAAACATAAAGGTGCACAT+TGG - Chr1:85856541-85856560 None:intergenic 30.0%
! AAATATTTGAGATGAGTGGA+AGG - Chr1:85858954-85858973 None:intergenic 30.0%
! AACTTATGTCTGACATTTTG+AGG + Chr1:85857845-85857864 MsG0180005026.01.T01:intron 30.0%
! ACTTATGTCTGACATTTTGA+GGG + Chr1:85857846-85857865 MsG0180005026.01.T01:intron 30.0%
! ATCAATCGTAGAAGTTGTTT+TGG - Chr1:85856991-85857010 None:intergenic 30.0%
! ATGGCACATTTTAGATGTTA+CGG + Chr1:85859204-85859223 MsG0180005026.01.T01:intron 30.0%
! GAAATCTAGTTCATGAGATT+AGG - Chr1:85855370-85855389 None:intergenic 30.0%
! GCATTGGCATTTATAATTGT+TGG + Chr1:85860088-85860107 MsG0180005026.01.T01:intron 30.0%
! GTGAATTCAGCATATTGTTT+TGG + Chr1:85858782-85858801 MsG0180005026.01.T01:intron 30.0%
! TCTATATTTTTCCAATGAGC+TGG - Chr1:85856760-85856779 None:intergenic 30.0%
! TTATTTAAGATGAAGCTGCT+TGG - Chr1:85857524-85857543 None:intergenic 30.0%
! TTTGATCATGTAAGCTCTAA+CGG + Chr1:85856846-85856865 MsG0180005026.01.T01:CDS 30.0%
!! CTAATACGTGCTTTAAGAAA+AGG - Chr1:85854836-85854855 None:intergenic 30.0%
!! CTATATGGGTTAAAAGTATC+AGG - Chr1:85859719-85859738 None:intergenic 30.0%
!! CTTAAAGGATTTGTTGCAAA+AGG + Chr1:85860007-85860026 MsG0180005026.01.T01:intron 30.0%
!! GAGAAATATTTTTCTAGGAG+TGG - Chr1:85854979-85854998 None:intergenic 30.0%
!! TCCTTTAAGTCAACTTTTTC+CGG - Chr1:85859996-85860015 None:intergenic 30.0%
!! TTCACTTTTAGTGTCATGTT+GGG - Chr1:85858231-85858250 None:intergenic 30.0%
!! TTGGAGTAATACAGTTTTGA+TGG + Chr1:85854670-85854689 MsG0180005026.01.T01:intron 30.0%
!!! AATAATGTCATTTTGCACAC+TGG + Chr1:85856462-85856481 MsG0180005026.01.T01:intron 30.0%
!!! ATTTTTTCTTCACAGAACCA+AGG + Chr1:85857136-85857155 MsG0180005026.01.T01:intron 30.0%
!!! GCTAATTTTGGAATATGGAT+TGG + Chr1:85858301-85858320 MsG0180005026.01.T01:intron 30.0%
AAAAATGTTCCAGAAGCGAA+TGG + Chr1:85859345-85859364 MsG0180005026.01.T01:CDS 35.0%
AAAAGTAGGACGAAAACAGA+TGG + Chr1:85859848-85859867 MsG0180005026.01.T01:intron 35.0%
AAAATGGTCTCACCATTGTT+GGG - Chr1:85857061-85857080 None:intergenic 35.0%
AAAATTAGCAACTTTGCAGC+TGG - Chr1:85858290-85858309 None:intergenic 35.0%
AACATTCTGAGTCGAATTGT+AGG + Chr1:85859744-85859763 MsG0180005026.01.T01:intron 35.0%
AACTAAGTGAGTGTGTGAAA+AGG - Chr1:85855244-85855263 None:intergenic 35.0%
AACTTTATCGAGGAGAAGAA+AGG - Chr1:85857808-85857827 None:intergenic 35.0%
AAGTTGAAGTGTAAAGCTAG+AGG + Chr1:85855686-85855705 MsG0180005026.01.T01:intron 35.0%
AATAGTCAAATTCGCAAGGT+AGG + Chr1:85858523-85858542 MsG0180005026.01.T01:intron 35.0%
ACCAAGGAAACATTGCTAAA+TGG + Chr1:85857152-85857171 MsG0180005026.01.T01:intron 35.0%
ACCTGCTTCATCTAAAGAAA+AGG + Chr1:85858414-85858433 MsG0180005026.01.T01:CDS 35.0%
ACCTTGCGAATTTGACTATT+CGG - Chr1:85858523-85858542 None:intergenic 35.0%
ACTTATACTAACCTCCTAGT+CGG + Chr1:85855790-85855809 MsG0180005026.01.T01:intron 35.0%
AGGCGACGAAAAAATTATGA+TGG + Chr1:85854872-85854891 MsG0180005026.01.T01:intron 35.0%
AGTGTATCAAGAGGTTATGA+GGG - Chr1:85854937-85854956 None:intergenic 35.0%
AGTTGAAGTGTAAAGCTAGA+GGG + Chr1:85855687-85855706 MsG0180005026.01.T01:intron 35.0%
ATATCTTAGCCAAAATCTGC+AGG - Chr1:85856221-85856240 None:intergenic 35.0%
ATCTAATAGATTGAAGTGGG+TGG + Chr1:85857332-85857351 MsG0180005026.01.T01:intron 35.0%
ATCTGAGTACATGCAAGAAA+TGG + Chr1:85859784-85859803 MsG0180005026.01.T01:intron 35.0%
ATCTTAGGTGTTAGAACTAG+TGG + Chr1:85859420-85859439 MsG0180005026.01.T01:CDS 35.0%
ATGCATACCCAAAAAAAGAG+AGG - Chr1:85855610-85855629 None:intergenic 35.0%
CACAAAGCTGGTATTCTATT+TGG + Chr1:85857751-85857770 MsG0180005026.01.T01:intron 35.0%
CGAATATAGGCATGCTTAAA+AGG - Chr1:85855331-85855350 None:intergenic 35.0%
CGTGGAAGAAAAGTTTATGT+TGG - Chr1:85857104-85857123 None:intergenic 35.0%
GAACAAGACACCTTTAAGTA+TGG - Chr1:85855069-85855088 None:intergenic 35.0%
GAAGGAAACTGTTTAGTACT+AGG - Chr1:85857640-85857659 None:intergenic 35.0%
GAATTTGAAAGTCTGAAGAG+GGG + Chr1:85857395-85857414 MsG0180005026.01.T01:CDS 35.0%
GACTAAAGGAAGACATTGTT+TGG + Chr1:85858662-85858681 MsG0180005026.01.T01:intron 35.0%
GAGATGTAAATAGAAAGGAC+AGG - Chr1:85858874-85858893 None:intergenic 35.0%
GATGCAGTGAAAAATAAGCA+AGG - Chr1:85855425-85855444 None:intergenic 35.0%
GCAATAATATGCACGACATA+AGG - Chr1:85859062-85859081 None:intergenic 35.0%
GCCACACTTATATTATCATC+AGG + Chr1:85859027-85859046 MsG0180005026.01.T01:intron 35.0%
GCTAGTGGTAAAACATAGAA+AGG + Chr1:85859685-85859704 MsG0180005026.01.T01:intron 35.0%
GCTTAACGGAAGAATAAGAA+TGG + Chr1:85859900-85859919 MsG0180005026.01.T01:intron 35.0%
GGCAATGTAAGATCGATAAA+TGG - Chr1:85855180-85855199 None:intergenic 35.0%
GGGATATGTTGAATTGTAAC+AGG - Chr1:85854593-85854612 None:intergenic 35.0%
GTCGAATTGTAGGATCATAT+CGG + Chr1:85859754-85859773 MsG0180005026.01.T01:intron 35.0%
GTGTGAAAAGGCAAAAGAAT+TGG - Chr1:85855232-85855251 None:intergenic 35.0%
GTTGCCAAAGACTAAAAAGT+AGG + Chr1:85859834-85859853 MsG0180005026.01.T01:intron 35.0%
GTTGGAAGTAAACATTGCTA+TGG - Chr1:85856398-85856417 None:intergenic 35.0%
TAAAATGGTCTCACCATTGT+TGG - Chr1:85857062-85857081 None:intergenic 35.0%
TAAAGTAACCGCAATTAAGG+CGG - Chr1:85860144-85860163 None:intergenic 35.0%
TAGAGGCGACAAATACAATT+AGG - Chr1:85858758-85858777 None:intergenic 35.0%
TAGATGGCAAAACTTTATCG+AGG - Chr1:85857818-85857837 None:intergenic 35.0%
TATTGCAATCTGTTGTCCAA+CGG - Chr1:85856271-85856290 None:intergenic 35.0%
TATTGGATTACAGATGTACC+AGG - Chr1:85859236-85859255 None:intergenic 35.0%
TCCATTTAGCAATGTTTCCT+TGG - Chr1:85857156-85857175 None:intergenic 35.0%
TCTTTCACAGAATAGTTGCA+TGG + Chr1:85858590-85858609 MsG0180005026.01.T01:intron 35.0%
TGTTAAACGCTCACTATTCT+TGG + Chr1:85856663-85856682 MsG0180005026.01.T01:intron 35.0%
TTCCCTTAGAAAGGATCTAA+AGG + Chr1:85859160-85859179 MsG0180005026.01.T01:CDS 35.0%
TTTGCACAAATGAAGACTTG+AGG + Chr1:85857548-85857567 MsG0180005026.01.T01:intron 35.0%
! ACATTTTAGATGTTACGGCT+TGG + Chr1:85859209-85859228 MsG0180005026.01.T01:intron 35.0%
! AGCTGCAAAGTTGCTAATTT+TGG + Chr1:85858289-85858308 MsG0180005026.01.T01:intron 35.0%
! ATCTGACAGGAAGATTTTCT+TGG - Chr1:85854745-85854764 None:intergenic 35.0%
! GCATTATTGTTGGTAAGAAG+TGG - Chr1:85855152-85855171 None:intergenic 35.0%
! GGATTTAGAATGCTTAGCTT+AGG - Chr1:85855014-85855033 None:intergenic 35.0%
! GTCTAAAGTAACCGCAATTA+AGG - Chr1:85860147-85860166 None:intergenic 35.0%
! GTTGCAACATTTTTGTGGAT+TGG - Chr1:85855402-85855421 None:intergenic 35.0%
! TGGAAGTTTTCCTTAATTGC+AGG + Chr1:85860108-85860127 MsG0180005026.01.T01:intron 35.0%
! TTCTAGGAGTGGATCTAAAT+GGG - Chr1:85854968-85854987 None:intergenic 35.0%
! TTTCTAGGAGTGGATCTAAA+TGG - Chr1:85854969-85854988 None:intergenic 35.0%
!! AAGGATTTGTTGCAAAAGGA+AGG + Chr1:85860011-85860030 MsG0180005026.01.T01:intron 35.0%
!! AGGATTTGTTGCAAAAGGAA+GGG + Chr1:85860012-85860031 MsG0180005026.01.T01:intron 35.0%
!! AGTGAAAGGCTTTAAGTACA+AGG - Chr1:85857432-85857451 None:intergenic 35.0%
!! ATTGTTTGGTGTCTATCGTT+GGG + Chr1:85858676-85858695 MsG0180005026.01.T01:intron 35.0%
!! CCTTTAAGTCAACTTTTTCC+GGG - Chr1:85859995-85860014 None:intergenic 35.0%
!! CTATACATTGTGTTGCTTCT+GGG + Chr1:85855494-85855513 MsG0180005026.01.T01:intron 35.0%
!! CTTCACTTTTAGTGTCATGT+TGG - Chr1:85858232-85858251 None:intergenic 35.0%
!! CTTTAAGTCAACTTTTTCCG+GGG - Chr1:85859994-85860013 None:intergenic 35.0%
!! TATTGGTACTGATGGTTCAA+AGG + Chr1:85856238-85856257 MsG0180005026.01.T01:CDS 35.0%
!! TTTAAGTCAACTTTTTCCGG+GGG - Chr1:85859993-85860012 None:intergenic 35.0%
!!! AACATTTTTGTGGATTGGTG+TGG - Chr1:85855397-85855416 None:intergenic 35.0%
!!! AATCACATTTTTTCAACCCC+CGG + Chr1:85859974-85859993 MsG0180005026.01.T01:intron 35.0%
!!! ACATTTTTGTGGATTGGTGT+GGG - Chr1:85855396-85855415 None:intergenic 35.0%
!!! GAGTTCCATTTTTTTCTCTC+TGG + Chr1:85856321-85856340 MsG0180005026.01.T01:CDS 35.0%
!!! GCAGATTTTGGCTAAGATAT+TGG + Chr1:85856221-85856240 MsG0180005026.01.T01:CDS 35.0%
!!! TCCATTTTTTTCTCTCTGGA+GGG + Chr1:85856325-85856344 MsG0180005026.01.T01:CDS 35.0%
!!! TCGTCCTACTTTTTAGTCTT+TGG - Chr1:85859841-85859860 None:intergenic 35.0%
!!! TTCCATTTTTTTCTCTCTGG+AGG + Chr1:85856324-85856343 MsG0180005026.01.T01:CDS 35.0%
!!! TTTTCTTCCTAAGTACTGGA+TGG + Chr1:85854497-85854516 MsG0180005026.01.T01:CDS 35.0%
!!! TTTTTTGGGTATGCATAGCA+AGG + Chr1:85855614-85855633 MsG0180005026.01.T01:intron 35.0%
AAAAGTAGATGCCAGATCGT+TGG - Chr1:85858003-85858022 None:intergenic 40.0%
AAATGGTCTCACCATTGTTG+GGG - Chr1:85857060-85857079 None:intergenic 40.0%
AACTGTTTACCATTCGCTTC+TGG - Chr1:85859357-85859376 None:intergenic 40.0%
AATGGGGTAGGCATTATTGT+TGG - Chr1:85855162-85855181 None:intergenic 40.0%
ACAATTCAACATATCCCAGC+TGG + Chr1:85854596-85854615 MsG0180005026.01.T01:intron 40.0%
ACCAGAAGGTTCAAAAGAAG+TGG + Chr1:85857895-85857914 MsG0180005026.01.T01:CDS 40.0%
AGAAATGGAGACAGAAACTG+TGG + Chr1:85859799-85859818 MsG0180005026.01.T01:intron 40.0%
AGGAAAACCTACGGAAATAG+TGG - Chr1:85855311-85855330 None:intergenic 40.0%
AGTATGAAAGAAACCCAGGA+TGG + Chr1:85857665-85857684 MsG0180005026.01.T01:intron 40.0%
ATCTGCAGATCCAGTAATGT+TGG - Chr1:85856416-85856435 None:intergenic 40.0%
ATCTTATCACATCCAAGAGC+GGG - Chr1:85854806-85854825 None:intergenic 40.0%
ATGCATAGCAAGGCTAACAT+AGG + Chr1:85855624-85855643 MsG0180005026.01.T01:intron 40.0%
ATTACGAGGAGGATCAATTG+TGG - Chr1:85855280-85855299 None:intergenic 40.0%
ATTCCAAGAACAATGTGAGG+TGG - Chr1:85857026-85857045 None:intergenic 40.0%
ATTGCAATCTGTTGTCCAAC+GGG - Chr1:85856270-85856289 None:intergenic 40.0%
ATTGCTATGGTGTCCACATA+AGG - Chr1:85856385-85856404 None:intergenic 40.0%
ATTGTGTCCACTATTTCCGT+AGG + Chr1:85855301-85855320 MsG0180005026.01.T01:intron 40.0%
CATCACAATACTCGTCTAAC+TGG + Chr1:85855888-85855907 MsG0180005026.01.T01:intron 40.0%
CATCTTATCACATCCAAGAG+CGG - Chr1:85854807-85854826 None:intergenic 40.0%
GAATGACTACAATTCAAGGG+TGG - Chr1:85855934-85855953 None:intergenic 40.0%
GAATGTGTCAGATGTTACAC+TGG + Chr1:85859127-85859146 MsG0180005026.01.T01:intron 40.0%
GAGTGTATCAAGAGGTTATG+AGG - Chr1:85854938-85854957 None:intergenic 40.0%
GGGAATTAGGCTTACATGAT+GGG + Chr1:85859922-85859941 MsG0180005026.01.T01:intron 40.0%
GTAAGATCGATAAATGGGGT+AGG - Chr1:85855174-85855193 None:intergenic 40.0%
GTCTTACTAGGAAATCTGAC+AGG - Chr1:85854758-85854777 None:intergenic 40.0%
TACCAAATTTGCCCCTTATG+TGG + Chr1:85856369-85856388 MsG0180005026.01.T01:intron 40.0%
TCAAATGTTCCTGCTTCTGT+GGG + Chr1:85856902-85856921 MsG0180005026.01.T01:CDS 40.0%
TCCCTCCAGAGAGAAAAAAA+TGG - Chr1:85856329-85856348 None:intergenic 40.0%
TCCGAATAGTCAAATTCGCA+AGG + Chr1:85858519-85858538 MsG0180005026.01.T01:intron 40.0%
TCCTCTTCTTTCCCTTAGAA+AGG + Chr1:85859151-85859170 MsG0180005026.01.T01:CDS 40.0%
TTAAAGGCCATCCAGTACTT+AGG - Chr1:85854507-85854526 None:intergenic 40.0%
TTAGGCCATATCTAGCACAA+AGG - Chr1:85860193-85860212 None:intergenic 40.0%
TTCAAATGTTCCTGCTTCTG+TGG + Chr1:85856901-85856920 MsG0180005026.01.T01:CDS 40.0%
TTCATAACCATGTGGCTAGA+AGG + Chr1:85859646-85859665 MsG0180005026.01.T01:intron 40.0%
TTGCTATGGTGTCCACATAA+GGG - Chr1:85856384-85856403 None:intergenic 40.0%
TTGGACTGTCAAGTCATACT+GGG - Chr1:85854726-85854745 None:intergenic 40.0%
TTTGTTGCAAAAGGAAGGGA+TGG + Chr1:85860016-85860035 MsG0180005026.01.T01:intron 40.0%
! AAGTTTGAGTTCCAACGATC+TGG + Chr1:85857989-85858008 MsG0180005026.01.T01:intron 40.0%
! ACTTTTAGTGTCATGTTGGG+TGG - Chr1:85858228-85858247 None:intergenic 40.0%
! AGTTGTGTGAGTTGACTTAC+TGG - Chr1:85856298-85856317 None:intergenic 40.0%
! CAAGGGTTGCAACATTTTTG+TGG - Chr1:85855407-85855426 None:intergenic 40.0%
! CAGTTAGACGAGTATTGTGA+TGG - Chr1:85855890-85855909 None:intergenic 40.0%
! CATGATGGGAAATTGTGAAC+TGG + Chr1:85859936-85859955 MsG0180005026.01.T01:intron 40.0%
! CCAGCTTTGTGCTAAAAAAC+TGG - Chr1:85857742-85857761 None:intergenic 40.0%
! CCCGGAAAAAGTTGACTTAA+AGG + Chr1:85859992-85860011 MsG0180005026.01.T01:intron 40.0%
! GATTCGACCAAGTTTTACGT+TGG + Chr1:85855564-85855583 MsG0180005026.01.T01:intron 40.0%
! GCCTTTTCTTTAGATGAAGC+AGG - Chr1:85858418-85858437 None:intergenic 40.0%
! GGCTAAGATATTGGTACTGA+TGG + Chr1:85856230-85856249 MsG0180005026.01.T01:CDS 40.0%
! GTTGTGTGAGTTGACTTACT+GGG - Chr1:85856297-85856316 None:intergenic 40.0%
! TAGTGGACACAATGATTACG+AGG - Chr1:85855294-85855313 None:intergenic 40.0%
! TATTTTTCACTGCATCCAGG+TGG + Chr1:85855429-85855448 MsG0180005026.01.T01:intron 40.0%
! TCCTTTCTAAGGGAAAGAAG+AGG - Chr1:85859155-85859174 None:intergenic 40.0%
! TGTTGGTAAGAAGTGGAAGA+AGG - Chr1:85855145-85855164 None:intergenic 40.0%
! TTTGGATGACCTGCAGATTT+TGG + Chr1:85856209-85856228 MsG0180005026.01.T01:CDS 40.0%
! TTTTGTAGGTGATTGCCAAG+AGG + Chr1:85858981-85859000 MsG0180005026.01.T01:intron 40.0%
!! ACATAAGTTGGTCAGCTAGA+TGG - Chr1:85857834-85857853 None:intergenic 40.0%
!! ACGTGCTTTAAGAAAAGGGA+GGG - Chr1:85854831-85854850 None:intergenic 40.0%
!! CATTGTTTGGTGTCTATCGT+TGG + Chr1:85858675-85858694 MsG0180005026.01.T01:intron 40.0%
!! GCTATACATTGTGTTGCTTC+TGG + Chr1:85855493-85855512 MsG0180005026.01.T01:intron 40.0%
!! GCTTATTTTTCACTGCATCC+AGG + Chr1:85855426-85855445 MsG0180005026.01.T01:intron 40.0%
!! TACGTGCTTTAAGAAAAGGG+AGG - Chr1:85854832-85854851 None:intergenic 40.0%
!!! CCAGTTTTTTAGCACAAAGC+TGG + Chr1:85857739-85857758 MsG0180005026.01.T01:intron 40.0%
!!! CTTTGCGAGTTTGGTTTTGT+GGG - Chr1:85859576-85859595 None:intergenic 40.0%
AAATGTTCCTGCTTCTGTGG+GGG + Chr1:85856904-85856923 MsG0180005026.01.T01:CDS 45.0%
AAGTTGCTAAACAGTCCAGC+TGG - Chr1:85854614-85854633 None:intergenic 45.0%
ACAACATGTGCAATGCGAAC+AGG - Chr1:85857479-85857498 None:intergenic 45.0%
AGCCACATGGTTATGAAGCT+CGG - Chr1:85859643-85859662 None:intergenic 45.0%
AGGAGTCTATTCCAGCTCAT+TGG + Chr1:85856746-85856765 MsG0180005026.01.T01:intron 45.0%
AGTTGCTAAACAGTCCAGCT+GGG - Chr1:85854613-85854632 None:intergenic 45.0%
ATGAAAGAAACCCAGGATGG+TGG + Chr1:85857668-85857687 MsG0180005026.01.T01:intron 45.0%
ATGAGGGTTCCATATGTCCT+CGG - Chr1:85854921-85854940 None:intergenic 45.0%
CAAATGTTCCTGCTTCTGTG+GGG + Chr1:85856903-85856922 MsG0180005026.01.T01:CDS 45.0%
CACACACACACATTTGCCAT+AGG + Chr1:85856726-85856745 MsG0180005026.01.T01:intron 45.0%
CAGCACCTTTGTGCTAGATA+TGG + Chr1:85860185-85860204 MsG0180005026.01.T01:CDS 45.0%
CAGCAGCTCAGTAAACCAAA+AGG + Chr1:85858197-85858216 MsG0180005026.01.T01:CDS 45.0%
CCACAAAACCAAACTCGCAA+AGG + Chr1:85859574-85859593 MsG0180005026.01.T01:intron 45.0%
CGCATCAACATTGAATGCAC+TGG + Chr1:85858325-85858344 MsG0180005026.01.T01:intron 45.0%
CTGGTGCAACTATCTTAGCT+AGG - Chr1:85857880-85857899 None:intergenic 45.0%
CTTCCACCTCACATTGTTCT+TGG + Chr1:85857020-85857039 MsG0180005026.01.T01:intron 45.0%
CTTGGACTGTCAAGTCATAC+TGG - Chr1:85854727-85854746 None:intergenic 45.0%
GCATGTCAGAGTGTATCAAG+AGG - Chr1:85854946-85854965 None:intergenic 45.0%
GCTAAGATAGTTGCACCAGA+AGG + Chr1:85857881-85857900 MsG0180005026.01.T01:CDS 45.0%
GCTCGTGATATGTGTATCTC+AGG + Chr1:85854641-85854660 MsG0180005026.01.T01:intron 45.0%
GGCATTCCAAGAACAATGTG+AGG - Chr1:85857029-85857048 None:intergenic 45.0%
GGGGAATTAGGCTTACATGA+TGG + Chr1:85859921-85859940 MsG0180005026.01.T01:intron 45.0%
GGTGATTGCCAAGAGGTTAT+TGG + Chr1:85858988-85859007 MsG0180005026.01.T01:intron 45.0%
GGTGTTAGAACTAGTGGTGA+CGG + Chr1:85859426-85859445 MsG0180005026.01.T01:CDS 45.0%
GGTTCAAAAGAAGTGGCAGT+TGG + Chr1:85857902-85857921 MsG0180005026.01.T01:CDS 45.0%
GTCATACTGCTCTGCAATGA+AGG - Chr1:85859274-85859293 None:intergenic 45.0%
GTCCACATAAGGGGCAAATT+TGG - Chr1:85856374-85856393 None:intergenic 45.0%
TCAAACAGCCTTTGCGAGTT+TGG - Chr1:85859585-85859604 None:intergenic 45.0%
TCTTATCACATCCAAGAGCG+GGG - Chr1:85854805-85854824 None:intergenic 45.0%
TGAGCTGGAATAGACTCCTA+TGG - Chr1:85856745-85856764 None:intergenic 45.0%
TGCTATGGTGTCCACATAAG+GGG - Chr1:85856383-85856402 None:intergenic 45.0%
TGGACACAATGATTACGAGG+AGG - Chr1:85855291-85855310 None:intergenic 45.0%
TGTGTATCTCAGGCCATCTT+TGG + Chr1:85854651-85854670 MsG0180005026.01.T01:intron 45.0%
TTGGTCGAATCAATACGGCA+TGG - Chr1:85855555-85855574 None:intergenic 45.0%
! AGTTAATGCTACCGACTAGG+AGG - Chr1:85855804-85855823 None:intergenic 45.0%
! ATTGAATGCACTGGTCCTCA+CGG + Chr1:85858334-85858353 MsG0180005026.01.T01:intron 45.0%
! CATATCTAGCACAAAGGTGC+TGG - Chr1:85860187-85860206 None:intergenic 45.0%
! CTCAGTTAATGCTACCGACT+AGG - Chr1:85855807-85855826 None:intergenic 45.0%
! GCCACTTCTTTTGAACCTTC+TGG - Chr1:85857899-85857918 None:intergenic 45.0%
!! CGTGCTTTAAGAAAAGGGAG+GGG - Chr1:85854830-85854849 None:intergenic 45.0%
!! CTCACTGACTCCAGAATTGT+AGG - Chr1:85856810-85856829 None:intergenic 45.0%
!! GTCTGACATTTTGAGGGACT+AGG + Chr1:85857852-85857871 MsG0180005026.01.T01:intron 45.0%
!! TTGGTTTTCTCTCCTCACTG+CGG - Chr1:85856972-85856991 None:intergenic 45.0%
!!! CCTTTGCGAGTTTGGTTTTG+TGG - Chr1:85859577-85859596 None:intergenic 45.0%
!!! GTTTATAAATTTTAAATTAA+AGG - Chr1:85854523-85854542 None:intergenic 5.0%
AATGTTCCTGCTTCTGTGGG+GGG + Chr1:85856905-85856924 MsG0180005026.01.T01:CDS 50.0%
ACCATTGTTGGGGACAAAGC+AGG - Chr1:85857050-85857069 None:intergenic 50.0%
ACTGGGAGAGAGCTTGATAC+TGG - Chr1:85854709-85854728 None:intergenic 50.0%
ACTTCCAGCCGCCTTAATTG+CGG + Chr1:85860133-85860152 MsG0180005026.01.T01:CDS 50.0%
AGAAGGCTGTTGGAGATAGG+TGG + Chr1:85859663-85859682 MsG0180005026.01.T01:intron 50.0%
AGAGAAGAAACCAGCACACC+AGG + Chr1:85856943-85856962 MsG0180005026.01.T01:intron 50.0%
CCACATGGTTATGAAGCTCG+GGG - Chr1:85859641-85859660 None:intergenic 50.0%
CTCTAACGGTGAGCTTGACA+AGG + Chr1:85856860-85856879 MsG0180005026.01.T01:CDS 50.0%
CTGGAAGTGGCCTGCAATTA+AGG - Chr1:85860121-85860140 None:intergenic 50.0%
CTTGCAATTTATCCGTGCCC+AGG + Chr1:85856577-85856596 MsG0180005026.01.T01:intron 50.0%
GAAACTGTGGCAGACAGTGA+TGG + Chr1:85859812-85859831 MsG0180005026.01.T01:intron 50.0%
GCCACATGGTTATGAAGCTC+GGG - Chr1:85859642-85859661 None:intergenic 50.0%
GCTAGAAGGCTGTTGGAGAT+AGG + Chr1:85859660-85859679 MsG0180005026.01.T01:intron 50.0%
GTTCAAAGGATGTTGCCCGT+TGG + Chr1:85856252-85856271 MsG0180005026.01.T01:CDS 50.0%
TCAGTTGCTCAGCACCTTCT+GGG - Chr1:85859453-85859472 None:intergenic 50.0%
TCTTCAACCTGCGAAAGAGC+AGG - Chr1:85858141-85858160 None:intergenic 50.0%
TGTGATGGTCATACAGCACC+AGG - Chr1:85855875-85855894 None:intergenic 50.0%
TGTTGGAGATAGGTGGCTAG+TGG + Chr1:85859670-85859689 MsG0180005026.01.T01:intron 50.0%
TTCACCTCTCCGAGGACATA+TGG + Chr1:85854909-85854928 MsG0180005026.01.T01:intron 50.0%
! AAAGAGGTTAGCCACCATCC+TGG - Chr1:85857682-85857701 None:intergenic 50.0%
! AAGAGGTTAGCCACCATCCT+GGG - Chr1:85857681-85857700 None:intergenic 50.0%
! TGTTGGGTGGTCTCTCCTTT+TGG - Chr1:85858215-85858234 None:intergenic 50.0%
! TTTCTCTCTGGAGGGACTCT+AGG + Chr1:85856333-85856352 MsG0180005026.01.T01:CDS 50.0%
! TTTTCACTGCATCCAGGTGG+TGG + Chr1:85855432-85855451 MsG0180005026.01.T01:intron 50.0%
!! ATCTAGCACAAAGGTGCTGG+AGG - Chr1:85860184-85860203 None:intergenic 50.0%
!! TAGATGTTACGGCTTGGTCC+TGG + Chr1:85859215-85859234 MsG0180005026.01.T01:intron 50.0%
CCAACAGCCTTCTAGCCACA+TGG - Chr1:85859656-85859675 None:intergenic 55.0%
CCATGTGGCTAGAAGGCTGT+TGG + Chr1:85859653-85859672 MsG0180005026.01.T01:intron 55.0%
CCCCGAGCTTCATAACCATG+TGG + Chr1:85859638-85859657 MsG0180005026.01.T01:intron 55.0%
CCTTGGGACAAAGACGTCCT+GGG - Chr1:85856597-85856616 None:intergenic 55.0%
CGGTGAGCTTGACAAGGTTG+AGG + Chr1:85856866-85856885 MsG0180005026.01.T01:CDS 55.0%
CTCGGAGAGGTGAATGTGGA+GGG - Chr1:85854903-85854922 None:intergenic 55.0%
GCAATTAAGGCGGCTGGAAG+TGG - Chr1:85860134-85860153 None:intergenic 55.0%
GCCTGCTTTGTCCCCAACAA+TGG + Chr1:85857046-85857065 MsG0180005026.01.T01:intron 55.0%
GGTTCCATATGTCCTCGGAG+AGG - Chr1:85854916-85854935 None:intergenic 55.0%
GTAACCGCAATTAAGGCGGC+TGG - Chr1:85860140-85860159 None:intergenic 55.0%
GTCAGTTGCTCAGCACCTTC+TGG - Chr1:85859454-85859473 None:intergenic 55.0%
TATCACATCCAAGAGCGGGG+TGG - Chr1:85854802-85854821 None:intergenic 55.0%
TATGCTGCCTGCTCTTTCGC+AGG + Chr1:85858131-85858150 MsG0180005026.01.T01:intron 55.0%
TCCTTGGGACAAAGACGTCC+TGG - Chr1:85856598-85856617 None:intergenic 55.0%
TGTCCTCGGAGAGGTGAATG+TGG - Chr1:85854907-85854926 None:intergenic 55.0%
AGAACATGCCACCCCGCTCT+TGG + Chr1:85854791-85854810 MsG0180005026.01.T01:intron 60.0%
CCCAGGACGTCTTTGTCCCA+AGG + Chr1:85856594-85856613 MsG0180005026.01.T01:intron 60.0%
CCTCCACATTCACCTCTCCG+AGG + Chr1:85854901-85854920 MsG0180005026.01.T01:intron 60.0%
CCTCGGAGAGGTGAATGTGG+AGG - Chr1:85854904-85854923 None:intergenic 60.0%
GGACAAAGACGTCCTGGGCA+CGG - Chr1:85856592-85856611 None:intergenic 60.0%
GTTGTTGCTGCACCACCACC+TGG - Chr1:85855447-85855466 None:intergenic 60.0%
! GGTGCTGGAGGCTGCGATAA+AGG - Chr1:85860172-85860191 None:intergenic 60.0%
!! CTAGTGGTGACGGACCCAGA+AGG + Chr1:85859436-85859455 MsG0180005026.01.T01:CDS 60.0%
ACTGCGGCATCCTGGTGTGC+TGG - Chr1:85856956-85856975 None:intergenic 65.0%
CACACCAGGATGCCGCAGTG+AGG + Chr1:85856957-85856976 MsG0180005026.01.T01:intron 65.0%
CTCTCACCCCCCACAGAAGC+AGG - Chr1:85856914-85856933 None:intergenic 65.0%
CTCTCCTCACTGCGGCATCC+TGG - Chr1:85856964-85856983 None:intergenic 65.0%
CTTCTGTGGGGGGTGAGAGC+GGG + Chr1:85856915-85856934 MsG0180005026.01.T01:intron 65.0%
GCTTCTGTGGGGGGTGAGAG+CGG + Chr1:85856914-85856933 MsG0180005026.01.T01:intron 65.0%
TTCTGTGGGGGGTGAGAGCG+GGG + Chr1:85856916-85856935 MsG0180005026.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr1 gene 85854363 85860223 85854363 ID=MsG0180005026.01;Name=MsG0180005026.01
Chr1 mRNA 85854363 85860223 85854363 ID=MsG0180005026.01.T01;Parent=MsG0180005026.01;Name=MsG0180005026.01.T01;_AED=0.52;_eAED=0.64;_QI=0|0.11|0.2|1|0.66|0.6|10|0|401
Chr1 exon 85854363 85854583 85854363 ID=MsG0180005026.01.T01:exon:9761;Parent=MsG0180005026.01.T01
Chr1 exon 85856206 85856354 85856206 ID=MsG0180005026.01.T01:exon:9762;Parent=MsG0180005026.01.T01
Chr1 exon 85856826 85856926 85856826 ID=MsG0180005026.01.T01:exon:9763;Parent=MsG0180005026.01.T01
Chr1 exon 85857341 85857416 85857341 ID=MsG0180005026.01.T01:exon:9764;Parent=MsG0180005026.01.T01
Chr1 exon 85857867 85857943 85857867 ID=MsG0180005026.01.T01:exon:9765;Parent=MsG0180005026.01.T01
Chr1 exon 85858153 85858297 85858153 ID=MsG0180005026.01.T01:exon:9766;Parent=MsG0180005026.01.T01
Chr1 exon 85858398 85858526 85858398 ID=MsG0180005026.01.T01:exon:9767;Parent=MsG0180005026.01.T01
Chr1 exon 85859138 85859181 85859138 ID=MsG0180005026.01.T01:exon:9768;Parent=MsG0180005026.01.T01
Chr1 exon 85859288 85859457 85859288 ID=MsG0180005026.01.T01:exon:9769;Parent=MsG0180005026.01.T01
Chr1 exon 85860130 85860223 85860130 ID=MsG0180005026.01.T01:exon:9770;Parent=MsG0180005026.01.T01
Chr1 CDS 85854363 85854583 85854363 ID=MsG0180005026.01.T01:cds;Parent=MsG0180005026.01.T01
Chr1 CDS 85856206 85856354 85856206 ID=MsG0180005026.01.T01:cds;Parent=MsG0180005026.01.T01
Chr1 CDS 85856826 85856926 85856826 ID=MsG0180005026.01.T01:cds;Parent=MsG0180005026.01.T01
Chr1 CDS 85857341 85857416 85857341 ID=MsG0180005026.01.T01:cds;Parent=MsG0180005026.01.T01
Chr1 CDS 85857867 85857943 85857867 ID=MsG0180005026.01.T01:cds;Parent=MsG0180005026.01.T01
Chr1 CDS 85858153 85858297 85858153 ID=MsG0180005026.01.T01:cds;Parent=MsG0180005026.01.T01
Chr1 CDS 85858398 85858526 85858398 ID=MsG0180005026.01.T01:cds;Parent=MsG0180005026.01.T01
Chr1 CDS 85859138 85859181 85859138 ID=MsG0180005026.01.T01:cds;Parent=MsG0180005026.01.T01
Chr1 CDS 85859288 85859457 85859288 ID=MsG0180005026.01.T01:cds;Parent=MsG0180005026.01.T01
Chr1 CDS 85860130 85860223 85860130 ID=MsG0180005026.01.T01:cds;Parent=MsG0180005026.01.T01
Gene Sequence

>MsG0180005026.01.T01

TTGATTTCTTTGAATGAATTAATCATTTTCTCCTTGCTACTGTTTAATCTTACAGATAGCAGTGGTGATATACTATGTGAAATTGAAACTGACAAAGCTACACTTGAATTTGAAAGTCTTGAAGAAGGGTATTTTTTTCTTCCTAAGTACTGGATGGCCTTTAATTTAAAATTTATAAACTTGAGTTTCTTACTGTTGAAGTTAAAGGAAGCAACGCAAATTGATTTGGATGACCTGCAGATTTTGGCTAAGATATTGGTACTGATGGTTCAAAGGATGTTGCCCGTTGGACAACAGATTGCAATAGAACCCAGTAAGTCAACTCACACAACTTTAGAGTTCCATTTTTTTCTCTCTGGAGGGACTCTAGTGAGATTTGCATCCGAAATATTTGATCATGTAAGCTCTAACGGTGAGCTTGACAAGGTTGAGGAAGAAAGCGACATTCAAATGTTCCTGCTTCTGTGGGGGATTGAAGTGGGTGGTGACATATTATGCGAGATAGAGACAGACAAAGCTACCCTTGAATTTGAAAGTCTGAAGAGGGGGACTAGGTACCTAGCTAAGATAGTTGCACCAGAAGGTTCAAAAGAAGTGGCAGTTGGACAGCCTATTGCAATAACAGTTGAAGATGCAAGTGATATTGAAGCTGTTAAGAATTCTATTAGCAGCAGCTCAGTAAACCAAAAGGAGAGACCACCCAACATGACACTAAAAGTGAAGTCAAAACAAAGAAAACGAACACAGCACGAATCAGTCCAGCTGCAAAGAAAATTGTCTTCAAAACCTGCTTCATCTAAAGAAAAGGCATCATCATCTCAAAGTCATCAAGTTGCGACTTCACAAGAATCAAAGTCTAGCTTAAAGCAGTCAGATACTTATGATGATTTTCCGAATAATGTTACACTGGATCCTCTTCTTTCCCTTAGAAAGGATCTAAAGTATGACGTCAAAGTTTCAGTGAATGACATTATTATCAAAGTTGTAGCAGCTGCTCTCAAAAATGTTCCAGAAGCGAATGGTAAACAGTTTCCTATTATTTTTCTATCCATTTGTGTTGTATTTACCTTAATTATCTTAGGTGTTAGAACTAGTGGTGACGGACCCAGAAGGCCACTTCCAGCCGCCTTAATTGCGGTTACTTTAGACTGCCTTTATCGCAGCCTCCAGCACCTTTGTGCTAGATATGGCCTAAGTAGTACGTAA
Protein sequence

>MsG0180005026.01.T01

LISLNELIIFSLLLFNLTDSSGDILCEIETDKATLEFESLEEGYFFLPKYWMAFNLKFINLSFLLLKLKEATQIDLDDLQILAKILVLMVQRMLPVGQQIAIEPSKSTHTTLEFHFFLSGGTLVRFASEIFDHVSSNGELDKVEEESDIQMFLLLWGIEVGGDILCEIETDKATLEFESLKRGTRYLAKIVAPEGSKEVAVGQPIAITVEDASDIEAVKNSISSSSVNQKERPPNMTLKVKSKQRKRTQHESVQLQRKLSSKPASSKEKASSSQSHQVATSQESKSSLKQSDTYDDFPNNVTLDPLLSLRKDLKYDVKVSVNDIIIKVVAAALKNVPEANGKQFPIIFLSICVVFTLIILGVRTSGDGPRRPLPAALIAVTLDCLYRSLQHLCARYGLSST*