AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180003799.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180003799.01.T01 MTR_1g069645 99.525 421 2 0 1 421 1 421 0.0 848
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180003799.01.T01 AT2G20420 85.885 418 59 0 2 419 1 418 0.0 747

Find 103 sgRNAs with CRISPR-Local

Find 339 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTGGAAAGTGTTTACTTAT+TGG 0.141400 1:-68354358 None:intergenic
GAAGTTTGAATATCTCTTTC+TGG 0.175075 1:-68352058 None:intergenic
GACCATTGTTGTTAGGGTTT+TGG 0.196821 1:-68349409 None:intergenic
GCTTATTATTGCTTGTAAAA+AGG 0.205295 1:+68351581 MsG0180003799.01.T01:intron
AAGGCAGATTTAAATTATAT+TGG 0.212296 1:+68352994 MsG0180003799.01.T01:CDS
TATAGGTCTTTCTTCAACTA+TGG 0.221689 1:-68349345 None:intergenic
TGAGGATCTTCAATTTATTT+TGG 0.228148 1:+68354533 MsG0180003799.01.T01:three_prime_UTR
ATTGGGTTAGATGGAGAAAT+TGG 0.248780 1:+68353012 MsG0180003799.01.T01:CDS
TTAAATTATATTGGGTTAGA+TGG 0.259385 1:+68353003 MsG0180003799.01.T01:CDS
ATTTCCAGACATGATTATTA+AGG 0.260056 1:+68351635 MsG0180003799.01.T01:CDS
TGATTCTGACTGCACTCTTT+TGG 0.271327 1:+68351859 MsG0180003799.01.T01:CDS
TTCCACATTATTGTTCAATT+AGG 0.296568 1:+68354374 MsG0180003799.01.T01:three_prime_UTR
TGATTTCTATCAGCCACTTT+AGG 0.310229 1:-68351797 None:intergenic
TCTCTCTTACATTTCAAGAT+AGG 0.312462 1:+68354420 MsG0180003799.01.T01:three_prime_UTR
ATTAATAACGGCTGAAGATT+TGG 0.314200 1:+68354165 MsG0180003799.01.T01:CDS
GCTGAATTGATGAGCAAATA+TGG 0.315960 1:+68349662 MsG0180003799.01.T01:CDS
TGACAAAGTGAAGGCGATTT+TGG 0.316363 1:+68353429 MsG0180003799.01.T01:CDS
AGGCAGATTTAAATTATATT+GGG 0.326373 1:+68352995 MsG0180003799.01.T01:CDS
ATCCTCTGACCATTGTTGTT+AGG 0.334086 1:-68349416 None:intergenic
ACCACCGACATCCAGAAAAT+TGG 0.337667 1:-68353106 None:intergenic
CCTTCAAGACGAACTATTAC+TGG 0.352447 1:-68353962 None:intergenic
TTAGCCGGTGGACGAGGATT+GGG 0.369874 1:+68350149 MsG0180003799.01.T01:CDS
ACCGGGGAATGCATCTTTGA+TGG 0.376142 1:-68349738 None:intergenic
AAATAGTGTTGTAACTAAAC+TGG 0.376409 1:-68354252 None:intergenic
TGCAAAGGTTGTTGATGGTT+TGG 0.380876 1:+68351772 MsG0180003799.01.T01:CDS
TGAGGAAACCGCTACGCCTC+TGG 0.390330 1:-68349696 None:intergenic
TCTCAACATCCACGAGTATC+AGG 0.395102 1:+68349506 MsG0180003799.01.T01:CDS
TCCTCTGACCATTGTTGTTA+GGG 0.398230 1:-68349415 None:intergenic
TACAAAACAGTCAGGTCCTC+AGG 0.399292 1:+68350484 MsG0180003799.01.T01:CDS
TTCTGCAAGGTCTTCAATGC+TGG 0.400023 1:-68351610 None:intergenic
TTTAGCCGGTGGACGAGGAT+TGG 0.412502 1:+68350148 MsG0180003799.01.T01:CDS
CTCTCTCCGTCGCCGGCACA+TGG 0.417809 1:+68349463 MsG0180003799.01.T01:CDS
GAACTTGATTCGATCGATAT+AGG 0.423710 1:-68349362 None:intergenic
CCAGTAATAGTTCGTCTTGA+AGG 0.437190 1:+68353962 MsG0180003799.01.T01:CDS
AATGTACTTTGCTATAACTC+TGG 0.458552 1:+68351360 MsG0180003799.01.T01:CDS
CAAACCTTAATAATCATGTC+TGG 0.470096 1:-68351639 None:intergenic
GTTGAACATGGTTCACCGAT+TGG 0.478616 1:+68354490 MsG0180003799.01.T01:three_prime_UTR
GATGCTGCAAAGGTTGTTGA+TGG 0.481004 1:+68351767 MsG0180003799.01.T01:CDS
GGCTGCATGGTGAATGGAGC+AGG 0.482177 1:+68353033 MsG0180003799.01.T01:CDS
GGATCGTAAGACTGCTGGTC+CGG 0.485726 1:+68351381 MsG0180003799.01.T01:CDS
TAGCATCAGCAGCTACTAGT+TGG 0.488406 1:-68352004 None:intergenic
TTATCAGCTGTCTCCGCCAT+GGG 0.493856 1:-68351981 None:intergenic
CGCCTTCACTTTGTCATCAG+CGG 0.496140 1:-68353422 None:intergenic
GGATCAGGTGGCTGCTGCAA+AGG 0.496306 1:+68352975 MsG0180003799.01.T01:intron
GTTATCAGCTGTCTCCGCCA+TGG 0.498469 1:-68351982 None:intergenic
GAAGGCACCAATGTTGATCA+AGG 0.499839 1:+68353980 MsG0180003799.01.T01:CDS
AATAGTGAATGCTGCAAAGC+AGG 0.513542 1:+68353498 MsG0180003799.01.T01:CDS
GCCATCAAAGATGCATTCCC+CGG 0.516361 1:+68349737 MsG0180003799.01.T01:CDS
GAAATTGGCTGCATGGTGAA+TGG 0.525680 1:+68353027 MsG0180003799.01.T01:CDS
GGTTCACCGATTGGACAAAA+CGG 0.526837 1:+68354499 MsG0180003799.01.T01:three_prime_UTR
GAGGAAACCGCTACGCCTCT+GGG 0.528679 1:-68349695 None:intergenic
GTTACAAATTATTGACGAGA+AGG 0.535912 1:+68354282 MsG0180003799.01.T01:three_prime_UTR
CTGTTGATTCTGCCATGTGC+CGG 0.536899 1:-68349475 None:intergenic
AAAATTCTAGGGTGTAGTAT+TGG 0.538094 1:+68349294 MsG0180003799.01.T01:five_prime_UTR
TGATGGTTTGGCTCCTAAAG+TGG 0.542936 1:+68351784 MsG0180003799.01.T01:CDS
ACTCTGGATCGTAAGACTGC+TGG 0.543398 1:+68351376 MsG0180003799.01.T01:CDS
AAGTGGTATGGCATTAATAA+CGG 0.545339 1:+68354153 MsG0180003799.01.T01:CDS
TAGCCGGTGGACGAGGATTG+GGG 0.546458 1:+68350150 MsG0180003799.01.T01:CDS
TCTCGCTCTCTCTCCGTCGC+CGG 0.547633 1:+68349456 MsG0180003799.01.T01:CDS
AAATGCTTTAATAGCCACTA+CGG 0.558659 1:-68354335 None:intergenic
GTTTCAACAGGAAAGTGGTA+TGG 0.559539 1:+68354141 MsG0180003799.01.T01:intron
AGTCCCCAATCCTCGTCCAC+CGG 0.563023 1:-68350153 None:intergenic
GGTTTATGCATGTGATTGCA+TGG 0.563716 1:+68354395 MsG0180003799.01.T01:three_prime_UTR
TGGTGCTGCCTCTGAAAACC+AGG 0.565708 1:+68353125 MsG0180003799.01.T01:CDS
TTACAAATTATTGACGAGAA+GGG 0.567596 1:+68354283 MsG0180003799.01.T01:three_prime_UTR
ATACTAGTTACAAAACAGTC+AGG 0.567777 1:+68350476 MsG0180003799.01.T01:CDS
TGAATGTTTCAACAGGAAAG+TGG 0.569848 1:+68354136 MsG0180003799.01.T01:intron
ATTCTGCCATGTGCCGGCGA+CGG 0.571062 1:-68349469 None:intergenic
GACCAGGTTGAAGATATAGC+TGG 0.576329 1:+68350218 MsG0180003799.01.T01:CDS
AAGTGTGATGTTATAGCAAG+TGG 0.576361 1:+68353475 MsG0180003799.01.T01:CDS
ATGGATATAATTAAGTTGCA+TGG 0.580190 1:+68353072 MsG0180003799.01.T01:CDS
CAACTTAATTATATCCATTG+TGG 0.580693 1:-68353067 None:intergenic
AACCTAATTGAACAATAATG+TGG 0.581936 1:-68354376 None:intergenic
TACTGATGAAGATGCTGCAA+AGG 0.593207 1:+68351757 MsG0180003799.01.T01:CDS
ACAAAACAGTCAGGTCCTCA+GGG 0.599578 1:+68350485 MsG0180003799.01.T01:CDS
GGATTGGGGACTTTCAAAAG+TGG 0.603342 1:+68350164 MsG0180003799.01.T01:CDS
ACTTCGTGATACAACACAAG+AGG 0.604434 1:+68352076 MsG0180003799.01.T01:CDS
TAACGTTCCCAGAGGCGTAG+CGG 0.610301 1:+68349688 MsG0180003799.01.T01:CDS
TCTTTCACAGATCAATCCCA+TGG 0.610578 1:+68351965 MsG0180003799.01.T01:intron
GCATTTAACTATACCTCTCG+AGG 0.610638 1:-68352101 None:intergenic
TCAAGGGAAAAGCATTCTGA+AGG 0.611993 1:+68353997 MsG0180003799.01.T01:CDS
TATCTCTTTCTGGCGATATG+CGG 0.620041 1:-68352048 None:intergenic
AAAATACAGTCTGTTGAACA+TGG 0.620909 1:+68354478 MsG0180003799.01.T01:three_prime_UTR
AGATGGAGAAATTGGCTGCA+TGG 0.622314 1:+68353020 MsG0180003799.01.T01:CDS
AAGGCACCAATGTTGATCAA+GGG 0.623746 1:+68353981 MsG0180003799.01.T01:CDS
CCGACATCCAGAAAATTGGC+AGG 0.624013 1:-68353102 None:intergenic
AACCGCTGATGACAAAGTGA+AGG 0.632167 1:+68353420 MsG0180003799.01.T01:CDS
TGCATTCCCCGGTCAAAACG+AGG 0.636965 1:+68349748 MsG0180003799.01.T01:CDS
AGGGTTAGCAATGGCCACAA+TGG 0.643855 1:+68353053 MsG0180003799.01.T01:CDS
CGAGAGGGACCTGATACTCG+TGG 0.643858 1:-68349515 None:intergenic
ACCCTAACAACAATGGTCAG+AGG 0.649848 1:+68349414 MsG0180003799.01.T01:exon
GAATGGAGCAGGGTTAGCAA+TGG 0.649914 1:+68353044 MsG0180003799.01.T01:CDS
GCACATTGTTAAGACTGACC+AGG 0.652128 1:+68350202 MsG0180003799.01.T01:CDS
TACCAGCTATATCTTCAACC+TGG 0.653753 1:-68350220 None:intergenic
ATCCAAAACCCTAACAACAA+TGG 0.659235 1:+68349407 MsG0180003799.01.T01:exon
TCTTCTCATTGAATCCGTAG+TGG 0.667087 1:+68354321 MsG0180003799.01.T01:three_prime_UTR
GATACTCGTGGATGTTGAGA+CGG 0.670255 1:-68349503 None:intergenic
AACACAAGAGGATCCTCGAG+AGG 0.699355 1:+68352088 MsG0180003799.01.T01:CDS
ACTCGTGGATGTTGAGACGG+CGG 0.714705 1:-68349500 None:intergenic
GATATAATTAAGTTGCATGG+CGG 0.729232 1:+68353075 MsG0180003799.01.T01:CDS
GCTGCATGGTGAATGGAGCA+GGG 0.729760 1:+68353034 MsG0180003799.01.T01:CDS
TTCACAGATCAATCCCATGG+CGG 0.738791 1:+68351968 MsG0180003799.01.T01:intron
TATGGAGTTAACGTTCCCAG+AGG 0.766145 1:+68349680 MsG0180003799.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTAAAAATAAAATAAAAAA+AGG - Chr1:68353878-68353897 None:intergenic 0.0%
!! AATAAATTAATACTTATGAA+TGG - Chr1:68350334-68350353 None:intergenic 10.0%
!! ATAAAAATAAAAAATTCAGT+TGG - Chr1:68350967-68350986 None:intergenic 10.0%
!! GAAATAAAAATAAAAATTCT+AGG + Chr1:68349282-68349301 MsG0180003799.01.T01:five_prime_UTR 10.0%
!! ATTATATAAAACTGCTAATA+AGG - Chr1:68353655-68353674 None:intergenic 15.0%
!! GTATGTAAAAAAATAAAAAG+TGG - Chr1:68351226-68351245 None:intergenic 15.0%
!!! AAAGTAAGATTTTAATAATC+AGG - Chr1:68352882-68352901 None:intergenic 15.0%
!!! ATTAAAACATTTTGCAATTA+TGG - Chr1:68349920-68349939 None:intergenic 15.0%
!!! ATTTTTTGGTGATTTTTTTT+TGG + Chr1:68350401-68350420 MsG0180003799.01.T01:intron 15.0%
!!! GTATGCATTTTAAAATAAAA+TGG - Chr1:68351190-68351209 None:intergenic 15.0%
!!! TATTTTATTTTTAAAGCACT+GGG + Chr1:68353883-68353902 MsG0180003799.01.T01:intron 15.0%
!!! TTATTAGCAGTTTTATATAA+TGG + Chr1:68353654-68353673 MsG0180003799.01.T01:intron 15.0%
!!! TTATTTTATTTTTAAAGCAC+TGG + Chr1:68353882-68353901 MsG0180003799.01.T01:intron 15.0%
!!! TTTTATATAATGGTTTTGTT+TGG + Chr1:68353664-68353683 MsG0180003799.01.T01:intron 15.0%
!!! TTTTTTTGTTTAACTAATTG+AGG + Chr1:68349876-68349895 MsG0180003799.01.T01:intron 15.0%
!! AAGGCAGATTTAAATTATAT+TGG + Chr1:68352994-68353013 MsG0180003799.01.T01:CDS 20.0%
!! AGGCAGATTTAAATTATATT+GGG + Chr1:68352995-68353014 MsG0180003799.01.T01:CDS 20.0%
!! CAATATAAGTTATTATTGTG+TGG - Chr1:68352359-68352378 None:intergenic 20.0%
!! CATCTTATATAGAATTAGAA+AGG - Chr1:68350306-68350325 None:intergenic 20.0%
!! CTGTAAAAAAATTAGACAAT+TGG - Chr1:68351305-68351324 None:intergenic 20.0%
!! CTTATTATTGCTTGTAAAAA+GGG + Chr1:68351582-68351601 MsG0180003799.01.T01:CDS 20.0%
!! GTACATATAGATATAACAAT+TGG - Chr1:68351065-68351084 None:intergenic 20.0%
!! TATACACTTAAAACCATTTA+TGG + Chr1:68351024-68351043 MsG0180003799.01.T01:intron 20.0%
!! TATTCAATTTGAATTTAGAG+AGG + Chr1:68350350-68350369 MsG0180003799.01.T01:intron 20.0%
!! TTAAAACCATTTATGGTATT+TGG + Chr1:68351031-68351050 MsG0180003799.01.T01:intron 20.0%
!! TTATTATTGGTCAAATTTAG+AGG - Chr1:68351518-68351537 None:intergenic 20.0%
!!! AAAATGTTTTAATGCATGTT+TGG + Chr1:68349927-68349946 MsG0180003799.01.T01:intron 20.0%
!!! AAAGTTTAGTCATTTTTTTC+TGG + Chr1:68350781-68350800 MsG0180003799.01.T01:intron 20.0%
!!! ACTTGATAATCTAGATTTTT+TGG + Chr1:68350387-68350406 MsG0180003799.01.T01:intron 20.0%
!!! AGAATAAAGCTGTTTTTAAA+CGG - Chr1:68353566-68353585 None:intergenic 20.0%
!!! AGTATAACCTTTAAAATTCA+CGG - Chr1:68349988-68350007 None:intergenic 20.0%
!!! ATTTCTGTTTTATATTACAC+AGG + Chr1:68352130-68352149 MsG0180003799.01.T01:intron 20.0%
!!! ATTTTATTTTTAAAGCACTG+GGG + Chr1:68353884-68353903 MsG0180003799.01.T01:intron 20.0%
!!! CAATTGTCTAATTTTTTTAC+AGG + Chr1:68351303-68351322 MsG0180003799.01.T01:intron 20.0%
!!! TTAAATTATATTGGGTTAGA+TGG + Chr1:68353003-68353022 MsG0180003799.01.T01:CDS 20.0%
!!! TTTCAATTTTCGTGAAATTA+GGG + Chr1:68349638-68349657 MsG0180003799.01.T01:intron 20.0%
!!! TTTGAAGCATTTTTATATAG+TGG + Chr1:68353692-68353711 MsG0180003799.01.T01:intron 20.0%
!!! TTTTAGAGAACAAAATTGTT+TGG - Chr1:68350580-68350599 None:intergenic 20.0%
!!! TTTTATATAGTGGTTTTGTT+TGG + Chr1:68353702-68353721 MsG0180003799.01.T01:intron 20.0%
!!! TTTTCAATTTTCGTGAAATT+AGG + Chr1:68349637-68349656 MsG0180003799.01.T01:intron 20.0%
! AAAAACCACTTAGAATCTAA+CGG - Chr1:68351090-68351109 None:intergenic 25.0%
! AAATACATCATGTGAAATCT+TGG - Chr1:68352856-68352875 None:intergenic 25.0%
! AAATAGTGTTGTAACTAAAC+TGG - Chr1:68354255-68354274 None:intergenic 25.0%
! AACCTAATTGAACAATAATG+TGG - Chr1:68354379-68354398 None:intergenic 25.0%
! AACTGATGATAAGAAACAAA+AGG - Chr1:68352911-68352930 None:intergenic 25.0%
! AATTGTCCTGAATAAAATGT+TGG + Chr1:68352506-68352525 MsG0180003799.01.T01:intron 25.0%
! ATACGTAGAATATATATGCA+AGG + Chr1:68351242-68351261 MsG0180003799.01.T01:intron 25.0%
! ATTTCCAGACATGATTATTA+AGG + Chr1:68351635-68351654 MsG0180003799.01.T01:CDS 25.0%
! ATTTGAACAAAAACATCTCA+AGG - Chr1:68353355-68353374 None:intergenic 25.0%
! CAACTTAATTATATCCATTG+TGG - Chr1:68353070-68353089 None:intergenic 25.0%
! CATATCAATCTTATTGATGT+AGG - Chr1:68353192-68353211 None:intergenic 25.0%
! GCTTATTATTGCTTGTAAAA+AGG + Chr1:68351581-68351600 MsG0180003799.01.T01:intron 25.0%
! TAAAGCTAATATACTGACAT+AGG - Chr1:68351414-68351433 None:intergenic 25.0%
! TACGTAGAATATATATGCAA+GGG + Chr1:68351243-68351262 MsG0180003799.01.T01:intron 25.0%
! TATATAGAATTAGAAAGGCA+TGG - Chr1:68350301-68350320 None:intergenic 25.0%
! TATGGAAAACTTCATAACAA+AGG - Chr1:68349902-68349921 None:intergenic 25.0%
! TGGAACTATTTGATATTGAA+AGG + Chr1:68353722-68353741 MsG0180003799.01.T01:intron 25.0%
! TTACAAATTATTGACGAGAA+GGG + Chr1:68354283-68354302 MsG0180003799.01.T01:three_prime_UTR 25.0%
! TTACTGTAATTATGTGAATC+AGG + Chr1:68353375-68353394 MsG0180003799.01.T01:intron 25.0%
! TTCCACATTATTGTTCAATT+AGG + Chr1:68354374-68354393 MsG0180003799.01.T01:three_prime_UTR 25.0%
! TTTGAATTTAGAGAGGTTAT+AGG + Chr1:68350357-68350376 MsG0180003799.01.T01:intron 25.0%
!! AACATCTTTTGTAACAATCA+GGG + Chr1:68352297-68352316 MsG0180003799.01.T01:intron 25.0%
!! ATGGATATAATTAAGTTGCA+TGG + Chr1:68353072-68353091 MsG0180003799.01.T01:CDS 25.0%
!! CATTTTATTCAGGACAATTT+TGG - Chr1:68352505-68352524 None:intergenic 25.0%
!! TAGCTTTTACAAAATCACAA+TGG + Chr1:68350011-68350030 MsG0180003799.01.T01:intron 25.0%
!! TATTTGAAATTTACACCCTT+TGG + Chr1:68350678-68350697 MsG0180003799.01.T01:intron 25.0%
!! TGAGGATCTTCAATTTATTT+TGG + Chr1:68354533-68354552 MsG0180003799.01.T01:three_prime_UTR 25.0%
!! TTCTCTAAAAATCGAAATTC+TGG + Chr1:68350590-68350609 MsG0180003799.01.T01:intron 25.0%
!!! ACAAACCATCTCTTTTAAAA+AGG + Chr1:68354049-68354068 MsG0180003799.01.T01:intron 25.0%
!!! ATGGTTTTAAGTGTATAACT+TGG - Chr1:68351021-68351040 None:intergenic 25.0%
!!! TCTTCAATTTATTTTGGTAG+AGG + Chr1:68354539-68354558 MsG0180003799.01.T01:three_prime_UTR 25.0%
!!! TGTGTCTTTTAACTTTTTTC+TGG + Chr1:68352954-68352973 MsG0180003799.01.T01:intron 25.0%
!!! TTAATTTTGATCTATGACGT+GGG + Chr1:68353785-68353804 MsG0180003799.01.T01:intron 25.0%
!!! TTCTCTTGCTGTTATTTTTT+AGG + Chr1:68353925-68353944 MsG0180003799.01.T01:intron 25.0%
!!! TTGGTGATTTTTTTTTGGTT+TGG + Chr1:68350406-68350425 MsG0180003799.01.T01:intron 25.0%
!!! TTGTCATTGTTGTTTTTTCA+GGG + Chr1:68350438-68350457 MsG0180003799.01.T01:intron 25.0%
!!! TTTAATTTTGATCTATGACG+TGG + Chr1:68353784-68353803 MsG0180003799.01.T01:intron 25.0%
!!! TTTGTCATTGTTGTTTTTTC+AGG + Chr1:68350437-68350456 MsG0180003799.01.T01:intron 25.0%
!!! TTTTAACTTTTTTCTGGATC+AGG + Chr1:68352960-68352979 MsG0180003799.01.T01:intron 25.0%
AAAATACAGTCTGTTGAACA+TGG + Chr1:68354478-68354497 MsG0180003799.01.T01:three_prime_UTR 30.0%
AAATGCTTTAATAGCCACTA+CGG - Chr1:68354338-68354357 None:intergenic 30.0%
AACCATTTATGGTATTTGGT+AGG + Chr1:68351035-68351054 MsG0180003799.01.T01:intron 30.0%
AAGTGGTATGGCATTAATAA+CGG + Chr1:68354153-68354172 MsG0180003799.01.T01:CDS 30.0%
AATTATGGTCTACAGAATCA+TGG - Chr1:68349778-68349797 None:intergenic 30.0%
ACATATGATAGAGAATGAAC+AGG + Chr1:68353593-68353612 MsG0180003799.01.T01:intron 30.0%
ACCTTGTCGAAATAATAACT+GGG - Chr1:68352476-68352495 None:intergenic 30.0%
ACGTAGAATATATATGCAAG+GGG + Chr1:68351244-68351263 MsG0180003799.01.T01:intron 30.0%
AGATGTTCTACAATATTGAG+CGG - Chr1:68352284-68352303 None:intergenic 30.0%
ATACTAGTTACAAAACAGTC+AGG + Chr1:68350476-68350495 MsG0180003799.01.T01:CDS 30.0%
ATGGACATGAAATGAAAACA+AGG - Chr1:68350282-68350301 None:intergenic 30.0%
ATGTAAACCAAATATTGGGT+TGG + Chr1:68352450-68352469 MsG0180003799.01.T01:intron 30.0%
ATTAATAACGGCTGAAGATT+TGG + Chr1:68354165-68354184 MsG0180003799.01.T01:CDS 30.0%
ATTATTGCTTGTAAAAAGGG+AGG + Chr1:68351585-68351604 MsG0180003799.01.T01:CDS 30.0%
ATTGAACTGAGAAACAACAA+AGG - Chr1:68350256-68350275 None:intergenic 30.0%
CAAACCTTAATAATCATGTC+TGG - Chr1:68351642-68351661 None:intergenic 30.0%
CATATGATAGAGAATGAACA+GGG + Chr1:68353594-68353613 MsG0180003799.01.T01:intron 30.0%
CTGCATGTAAACCAAATATT+GGG + Chr1:68352446-68352465 MsG0180003799.01.T01:intron 30.0%
GAAGTTTGAATATCTCTTTC+TGG - Chr1:68352061-68352080 None:intergenic 30.0%
GTTACAAATTATTGACGAGA+AGG + Chr1:68354282-68354301 MsG0180003799.01.T01:three_prime_UTR 30.0%
GTTCATTCTCTATCATATGT+AGG - Chr1:68353593-68353612 None:intergenic 30.0%
TATAGGTCTTTCTTCAACTA+TGG - Chr1:68349348-68349367 None:intergenic 30.0%
TATGAAACAGGATGATATCT+TGG - Chr1:68352702-68352721 None:intergenic 30.0%
TCTCTCTTACATTTCAAGAT+AGG + Chr1:68354420-68354439 MsG0180003799.01.T01:three_prime_UTR 30.0%
TCTGCATGTAAACCAAATAT+TGG + Chr1:68352445-68352464 MsG0180003799.01.T01:intron 30.0%
TGGGTTTAGATTCTTGATAT+TGG + Chr1:68353804-68353823 MsG0180003799.01.T01:intron 30.0%
TGTAAAGAAAAAAAGTCCCA+CGG - Chr1:68350710-68350729 None:intergenic 30.0%
TGTATGTAGCTAATTAAGCT+AGG - Chr1:68352744-68352763 None:intergenic 30.0%
TTCATTGTGAATGTTTCAAC+AGG + Chr1:68354129-68354148 MsG0180003799.01.T01:intron 30.0%
TTGAACTGAGAAACAACAAA+GGG - Chr1:68350255-68350274 None:intergenic 30.0%
TTGTGCTTATGATACAGTTA+AGG + Chr1:68352649-68352668 MsG0180003799.01.T01:intron 30.0%
TTGTGCTTATGATACAGTTA+TGG + Chr1:68352649-68352668 MsG0180003799.01.T01:intron 30.0%
TTTACATGCAATATGTCTGT+CGG + Chr1:68350724-68350743 MsG0180003799.01.T01:intron 30.0%
! AATGTACTTTGCTATAACTC+TGG + Chr1:68351360-68351379 MsG0180003799.01.T01:CDS 30.0%
! ACTTTCAAAAGTGGTTTTCA+GGG + Chr1:68350173-68350192 MsG0180003799.01.T01:CDS 30.0%
! CACAATCCAACATTTTATTC+AGG - Chr1:68352515-68352534 None:intergenic 30.0%
! GAACATCTTTTGTAACAATC+AGG + Chr1:68352296-68352315 MsG0180003799.01.T01:intron 30.0%
! GACTGTATTTTCATGTTTAC+TGG - Chr1:68354469-68354488 None:intergenic 30.0%
! GATATAATTAAGTTGCATGG+CGG + Chr1:68353075-68353094 MsG0180003799.01.T01:CDS 30.0%
! GCTTTTCTAATAAAAACCCT+TGG - Chr1:68353280-68353299 None:intergenic 30.0%
! GGAAGTAAATTTTCGTCAAT+TGG + Chr1:68351121-68351140 MsG0180003799.01.T01:intron 30.0%
! TTAAGCTAGGCTTTATGTTT+AGG - Chr1:68352731-68352750 None:intergenic 30.0%
! TTGGGTTCAATTCACATTTT+GGG + Chr1:68352237-68352256 MsG0180003799.01.T01:intron 30.0%
!! AAAATTCTAGGGTGTAGTAT+TGG + Chr1:68349294-68349313 MsG0180003799.01.T01:five_prime_UTR 30.0%
!! AGTGGTTTTTGTATTGATCA+TGG + Chr1:68351100-68351119 MsG0180003799.01.T01:intron 30.0%
!! GTTAAGAGTCAAATTTTAGC+CGG + Chr1:68350134-68350153 MsG0180003799.01.T01:CDS 30.0%
!! TATTTTTAAAAGTGGCCAAC+TGG + Chr1:68350984-68351003 MsG0180003799.01.T01:intron 30.0%
!! TGCTTCCTTTTTAAAAGAGA+TGG - Chr1:68354057-68354076 None:intergenic 30.0%
!! TGTGGAAAGTGTTTACTTAT+TGG - Chr1:68354361-68354380 None:intergenic 30.0%
!!! AAAACGGCTGATTTTAATTG+AGG + Chr1:68354515-68354534 MsG0180003799.01.T01:three_prime_UTR 30.0%
AAGTGTGATGTTATAGCAAG+TGG + Chr1:68353475-68353494 MsG0180003799.01.T01:CDS 35.0%
AGAGAACAAATCATTGAAGG+TGG - Chr1:68353331-68353350 None:intergenic 35.0%
AGCCTACCAAATACCATAAA+TGG - Chr1:68351040-68351059 None:intergenic 35.0%
AGTCCTTCAAAAACATCAAC+AGG - Chr1:68351737-68351756 None:intergenic 35.0%
ATCCAAAACCCTAACAACAA+TGG + Chr1:68349407-68349426 MsG0180003799.01.T01:exon 35.0%
CGTAAGTAGCTAATTAAGCT+AGG - Chr1:68352600-68352619 None:intergenic 35.0%
CGTAGAATATATATGCAAGG+GGG + Chr1:68351245-68351264 MsG0180003799.01.T01:intron 35.0%
CTGTAATTATGTGAATCAGG+TGG + Chr1:68353378-68353397 MsG0180003799.01.T01:intron 35.0%
CTTATGATACAGTTAAGGAG+TGG + Chr1:68352808-68352827 MsG0180003799.01.T01:intron 35.0%
CTTGTCTGTAATACATTACC+TGG - Chr1:68353146-68353165 None:intergenic 35.0%
GACCTTGTCGAAATAATAAC+TGG - Chr1:68352477-68352496 None:intergenic 35.0%
GATGTTCTACAATATTGAGC+GGG - Chr1:68352283-68352302 None:intergenic 35.0%
GCAACGTAGCTGTTTATTAT+TGG - Chr1:68351531-68351550 None:intergenic 35.0%
GCTGAATTGATGAGCAAATA+TGG + Chr1:68349662-68349681 MsG0180003799.01.T01:CDS 35.0%
GTTATTATTGTGTGGAGTAC+AGG - Chr1:68352351-68352370 None:intergenic 35.0%
TACAAACTGGTGTGTGATAT+AGG - Chr1:68353231-68353250 None:intergenic 35.0%
TACTGACATAGGAAACTTAC+CGG - Chr1:68351403-68351422 None:intergenic 35.0%
TACTTCCGTTAGATTCTAAG+TGG + Chr1:68351082-68351101 MsG0180003799.01.T01:intron 35.0%
TCAGGGAAAAATTGTTAGCA+AGG + Chr1:68350502-68350521 MsG0180003799.01.T01:CDS 35.0%
TGAATAAACGAATCTCGAGA+GGG - Chr1:68349533-68349552 None:intergenic 35.0%
TGAATGTTTCAACAGGAAAG+TGG + Chr1:68354136-68354155 MsG0180003799.01.T01:intron 35.0%
TTGGATAACAAATGTCCAGT+TGG - Chr1:68351002-68351021 None:intergenic 35.0%
TTTCAGCAAACATCAAGTGA+TGG - Chr1:68349805-68349824 None:intergenic 35.0%
! ACTCTGATGCTTTTGATATC+TGG + Chr1:68352777-68352796 MsG0180003799.01.T01:intron 35.0%
! AGACAAGATTGCTCTCATTT+TGG + Chr1:68353159-68353178 MsG0180003799.01.T01:intron 35.0%
! AGCACTTTAAGAATTGCTCA+TGG + Chr1:68351152-68351171 MsG0180003799.01.T01:intron 35.0%
! ATGCATTCCTTCTTTCTAGT+AGG + Chr1:68351709-68351728 MsG0180003799.01.T01:intron 35.0%
! ATTGGGTTAGATGGAGAAAT+TGG + Chr1:68353012-68353031 MsG0180003799.01.T01:CDS 35.0%
! GAACTTGATTCGATCGATAT+AGG - Chr1:68349365-68349384 None:intergenic 35.0%
! GACTTTCAAAAGTGGTTTTC+AGG + Chr1:68350172-68350191 MsG0180003799.01.T01:CDS 35.0%
! GTTGGGTTCAATTCACATTT+TGG + Chr1:68352236-68352255 MsG0180003799.01.T01:intron 35.0%
! TCAAGTGATGGTGTGAATTA+TGG - Chr1:68349793-68349812 None:intergenic 35.0%
! TGAGCTACCGTGAATTTTAA+AGG + Chr1:68349978-68349997 MsG0180003799.01.T01:intron 35.0%
! TGATTTCTATCAGCCACTTT+AGG - Chr1:68351800-68351819 None:intergenic 35.0%
! TGTCTGGAAATTTTTCTGCA+AGG - Chr1:68351626-68351645 None:intergenic 35.0%
! TTGCTAACAATTTTTCCCTG+AGG - Chr1:68350503-68350522 None:intergenic 35.0%
! TTTTCTGACTTCTTCAACTG+AGG - Chr1:68349717-68349736 None:intergenic 35.0%
!! AAACGGCGTCAATTTTGTTT+TGG - Chr1:68353549-68353568 None:intergenic 35.0%
!! ATACATTACCTGGTTTTCAG+AGG - Chr1:68353136-68353155 None:intergenic 35.0%
!! ATTTTGGTGAACATCTTTGG+TGG + Chr1:68353445-68353464 MsG0180003799.01.T01:CDS 35.0%
!! GTACCTGTTGATGTTTTTGA+AGG + Chr1:68351731-68351750 MsG0180003799.01.T01:CDS 35.0%
!! TTAAGCTAGGCTCTAAGTTT+AGG - Chr1:68352587-68352606 None:intergenic 35.0%
!! TTTAGGAGTGCTTATGAAAC+AGG - Chr1:68352714-68352733 None:intergenic 35.0%
!!! ATTTTTAAAGCACTGGGGTT+GGG + Chr1:68353889-68353908 MsG0180003799.01.T01:intron 35.0%
!!! TAACTTTTTTCTGGATCAGG+TGG + Chr1:68352963-68352982 MsG0180003799.01.T01:intron 35.0%
!!! TATTTTTAAAGCACTGGGGT+TGG + Chr1:68353888-68353907 MsG0180003799.01.T01:intron 35.0%
!!! TTGTTGTTAGGGTTTTGGAT+CGG - Chr1:68349407-68349426 None:intergenic 35.0%
!!! TTTTTTCAGGGAAGATGCTT+GGG + Chr1:68350450-68350469 MsG0180003799.01.T01:intron 35.0%
AAAGAAAAAAAGTCCCACGG+TGG - Chr1:68350707-68350726 None:intergenic 40.0%
AACTGGCAAACCGATACAAA+TGG + Chr1:68350927-68350946 MsG0180003799.01.T01:intron 40.0%
AACTGGGATTATTGTGCAGT+TGG + Chr1:68350109-68350128 MsG0180003799.01.T01:intron 40.0%
AAGAAAAAAAGTCCCACGGT+GGG - Chr1:68350706-68350725 None:intergenic 40.0%
AATAGTGAATGCTGCAAAGC+AGG + Chr1:68353498-68353517 MsG0180003799.01.T01:CDS 40.0%
ACAGGTACCTACTAGAAAGA+AGG - Chr1:68351719-68351738 None:intergenic 40.0%
ACAGTGATACTGAACATGAG+TGG + Chr1:68350057-68350076 MsG0180003799.01.T01:intron 40.0%
ACCCAACCCAAAAACATATC+AGG - Chr1:68352223-68352242 None:intergenic 40.0%
ACTTCGTGATACAACACAAG+AGG + Chr1:68352076-68352095 MsG0180003799.01.T01:CDS 40.0%
ATGCATGTTTGGTATCACGA+CGG + Chr1:68349938-68349957 MsG0180003799.01.T01:intron 40.0%
CATGAACACCAGACCAATTT+GGG + Chr1:68350868-68350887 MsG0180003799.01.T01:intron 40.0%
CCAGTAATAGTTCGTCTTGA+AGG + Chr1:68353962-68353981 MsG0180003799.01.T01:CDS 40.0%
CCCAACCCAAAAACATATCA+GGG - Chr1:68352222-68352241 None:intergenic 40.0%
CCTTCAAGACGAACTATTAC+TGG - Chr1:68353965-68353984 None:intergenic 40.0%
CGGATTCGATTGAGGAAAAA+TGG - Chr1:68349387-68349406 None:intergenic 40.0%
CGTATAAGACAGGATGAGAT+GGG - Chr1:68352560-68352579 None:intergenic 40.0%
CTAGAAAGAAGGAATGCATC+AGG - Chr1:68351708-68351727 None:intergenic 40.0%
CTAGTGAGTAGCAACAACTA+AGG - Chr1:68353305-68353324 None:intergenic 40.0%
CTCATGTTCAGTATCACTGT+CGG - Chr1:68350057-68350076 None:intergenic 40.0%
GAGTGAAGTGAGGTTCTATA+TGG + Chr1:68352671-68352690 MsG0180003799.01.T01:intron 40.0%
GCATTTAACTATACCTCTCG+AGG - Chr1:68352104-68352123 None:intergenic 40.0%
GCCCAGTTATTATTTCGACA+AGG + Chr1:68352472-68352491 MsG0180003799.01.T01:intron 40.0%
GGCAGAGAACAAATCATTGA+AGG - Chr1:68353334-68353353 None:intergenic 40.0%
GGTTTATGCATGTGATTGCA+TGG + Chr1:68354395-68354414 MsG0180003799.01.T01:three_prime_UTR 40.0%
GTCATTACAACTTGAGTCCA+GGG + Chr1:68352183-68352202 MsG0180003799.01.T01:intron 40.0%
GTGAATAAACGAATCTCGAG+AGG - Chr1:68349534-68349553 None:intergenic 40.0%
GTTTCAACAGGAAAGTGGTA+TGG + Chr1:68354141-68354160 MsG0180003799.01.T01:intron 40.0%
TACAGTTATGGAGTGAAGTG+AGG + Chr1:68352661-68352680 MsG0180003799.01.T01:intron 40.0%
TACCAGCTATATCTTCAACC+TGG - Chr1:68350223-68350242 None:intergenic 40.0%
TACTGATGAAGATGCTGCAA+AGG + Chr1:68351757-68351776 MsG0180003799.01.T01:CDS 40.0%
TCATGAACACCAGACCAATT+TGG + Chr1:68350867-68350886 MsG0180003799.01.T01:intron 40.0%
TCATTACAACTTGAGTCCAG+GGG + Chr1:68352184-68352203 MsG0180003799.01.T01:intron 40.0%
TCTTCTCATTGAATCCGTAG+TGG + Chr1:68354321-68354340 MsG0180003799.01.T01:three_prime_UTR 40.0%
TCTTTCACAGATCAATCCCA+TGG + Chr1:68351965-68351984 MsG0180003799.01.T01:intron 40.0%
TGTCATTACAACTTGAGTCC+AGG + Chr1:68352182-68352201 MsG0180003799.01.T01:intron 40.0%
! AAGGCACCAATGTTGATCAA+GGG + Chr1:68353981-68354000 MsG0180003799.01.T01:CDS 40.0%
! ATCCTCTGACCATTGTTGTT+AGG - Chr1:68349419-68349438 None:intergenic 40.0%
! GCTTTTCCCTTGATCAACAT+TGG - Chr1:68353990-68354009 None:intergenic 40.0%
! GGACTCAAGTTGTAATGACA+GGG - Chr1:68352182-68352201 None:intergenic 40.0%
! TATCTCTTTCTGGCGATATG+CGG - Chr1:68352051-68352070 None:intergenic 40.0%
! TCAAGTTGTAATGACAGGGT+GGG - Chr1:68352178-68352197 None:intergenic 40.0%
! TCCAACGATGCCATTTGTAT+CGG - Chr1:68350940-68350959 None:intergenic 40.0%
! TCCTCTGACCATTGTTGTTA+GGG - Chr1:68349418-68349437 None:intergenic 40.0%
! TGACAAAGTGAAGGCGATTT+TGG + Chr1:68353429-68353448 MsG0180003799.01.T01:CDS 40.0%
! TGATTCTGACTGCACTCTTT+TGG + Chr1:68351859-68351878 MsG0180003799.01.T01:CDS 40.0%
! TGGACTCAAGTTGTAATGAC+AGG - Chr1:68352183-68352202 None:intergenic 40.0%
! TTTAGGAGTGCGTATAAGAC+AGG - Chr1:68352570-68352589 None:intergenic 40.0%
! TTTTGGATCGGATTCGATTG+AGG - Chr1:68349395-68349414 None:intergenic 40.0%
!! AAGAGTCAAATTTTAGCCGG+TGG + Chr1:68350137-68350156 MsG0180003799.01.T01:CDS 40.0%
!! AATCAGCCGTTTTGTCCAAT+CGG - Chr1:68354508-68354527 None:intergenic 40.0%
!! ACACTGTTGCTTTCGATATC+TGG + Chr1:68352623-68352642 MsG0180003799.01.T01:intron 40.0%
!! ATGGATTACCTCGTTTTGAC+CGG - Chr1:68349759-68349778 None:intergenic 40.0%
!! GACCATTGTTGTTAGGGTTT+TGG - Chr1:68349412-68349431 None:intergenic 40.0%
!! GCGATTTTGGTGAACATCTT+TGG + Chr1:68353442-68353461 MsG0180003799.01.T01:CDS 40.0%
!! TCAAGGGAAAAGCATTCTGA+AGG + Chr1:68353997-68354016 MsG0180003799.01.T01:CDS 40.0%
!! TGCAAAGGTTGTTGATGGTT+TGG + Chr1:68351772-68351791 MsG0180003799.01.T01:CDS 40.0%
!! TTCAAAAGTGGTTTTCAGGG+AGG + Chr1:68350176-68350195 MsG0180003799.01.T01:CDS 40.0%
!!! ATTTTGACTGTGATGAGGAG+TGG + Chr1:68350083-68350102 MsG0180003799.01.T01:intron 40.0%
!!! CCCTGATATGTTTTTGGGTT+GGG + Chr1:68352219-68352238 MsG0180003799.01.T01:intron 40.0%
!!! GGAGAATTTTGACTGTGATG+AGG + Chr1:68350078-68350097 MsG0180003799.01.T01:intron 40.0%
!!! GTTTTTTCAGGGAAGATGCT+TGG + Chr1:68350449-68350468 MsG0180003799.01.T01:intron 40.0%
AACCATCCAGCACTTGAAAC+TGG + Chr1:68350910-68350929 MsG0180003799.01.T01:intron 45.0%
AACCGCTGATGACAAAGTGA+AGG + Chr1:68353420-68353439 MsG0180003799.01.T01:CDS 45.0%
AACTGGGCCAACCCAATATT+TGG - Chr1:68352460-68352479 None:intergenic 45.0%
ACAAAACAGTCAGGTCCTCA+GGG + Chr1:68350485-68350504 MsG0180003799.01.T01:CDS 45.0%
ACAATGGCTCAATGTGACTC+TGG + Chr1:68350027-68350046 MsG0180003799.01.T01:intron 45.0%
ACCACCGACATCCAGAAAAT+TGG - Chr1:68353109-68353128 None:intergenic 45.0%
ACCCAAAAACATATCAGGGC+TGG - Chr1:68352218-68352237 None:intergenic 45.0%
ACCCTAACAACAATGGTCAG+AGG + Chr1:68349414-68349433 MsG0180003799.01.T01:exon 45.0%
ACCGATACAAATGGCATCGT+TGG + Chr1:68350936-68350955 MsG0180003799.01.T01:intron 45.0%
AGATGGAGAAATTGGCTGCA+TGG + Chr1:68353020-68353039 MsG0180003799.01.T01:CDS 45.0%
ATGCAATATGTCTGTCGGAG+AGG + Chr1:68350729-68350748 MsG0180003799.01.T01:intron 45.0%
CACCAGTTTGTAGTCTGCTT+TGG + Chr1:68353239-68353258 MsG0180003799.01.T01:intron 45.0%
CTGAAATCCAACGCCCAAAT+TGG - Chr1:68350846-68350865 None:intergenic 45.0%
GAAATTGGCTGCATGGTGAA+TGG + Chr1:68353027-68353046 MsG0180003799.01.T01:CDS 45.0%
GATACTCGTGGATGTTGAGA+CGG - Chr1:68349506-68349525 None:intergenic 45.0%
GATGCTGCAAAGGTTGTTGA+TGG + Chr1:68351767-68351786 MsG0180003799.01.T01:CDS 45.0%
GCACATTGTTAAGACTGACC+AGG + Chr1:68350202-68350221 MsG0180003799.01.T01:CDS 45.0%
GCGTATAAGACAGGATGAGA+TGG - Chr1:68352561-68352580 None:intergenic 45.0%
GGATTGGGGACTTTCAAAAG+TGG + Chr1:68350164-68350183 MsG0180003799.01.T01:CDS 45.0%
GTTGAACATGGTTCACCGAT+TGG + Chr1:68354490-68354509 MsG0180003799.01.T01:three_prime_UTR 45.0%
TACAAAACAGTCAGGTCCTC+AGG + Chr1:68350484-68350503 MsG0180003799.01.T01:CDS 45.0%
TACAAATGGCATCGTTGGAC+TGG + Chr1:68350941-68350960 MsG0180003799.01.T01:intron 45.0%
TACAGTTAAGGAGTGGAGTG+AGG + Chr1:68352815-68352834 MsG0180003799.01.T01:intron 45.0%
TAGCATCAGCAGCTACTAGT+TGG - Chr1:68352007-68352026 None:intergenic 45.0%
TATGGAGTTAACGTTCCCAG+AGG + Chr1:68349680-68349699 MsG0180003799.01.T01:CDS 45.0%
TCTCAACATCCACGAGTATC+AGG + Chr1:68349506-68349525 MsG0180003799.01.T01:CDS 45.0%
TGATGAGGAGTGGTGTAACT+GGG + Chr1:68350093-68350112 MsG0180003799.01.T01:intron 45.0%
TGCATGTTTGGTATCACGAC+GGG + Chr1:68349939-68349958 MsG0180003799.01.T01:intron 45.0%
TGCCAAAGCAGACTACAAAC+TGG - Chr1:68353244-68353263 None:intergenic 45.0%
TGGGATTATTGTGCAGTTGG+TGG + Chr1:68350112-68350131 MsG0180003799.01.T01:intron 45.0%
TTCACAGATCAATCCCATGG+CGG + Chr1:68351968-68351987 MsG0180003799.01.T01:intron 45.0%
TTCTGCAAGGTCTTCAATGC+TGG - Chr1:68351613-68351632 None:intergenic 45.0%
! AGCCAGCCCTGATATGTTTT+TGG + Chr1:68352213-68352232 MsG0180003799.01.T01:intron 45.0%
! CCTGCCAATTTTCTGGATGT+CGG + Chr1:68353102-68353121 MsG0180003799.01.T01:CDS 45.0%
! CGACGGGTTTGTCAGAATTA+CGG + Chr1:68349955-68349974 MsG0180003799.01.T01:intron 45.0%
! CTCAAGTTGTAATGACAGGG+TGG - Chr1:68352179-68352198 None:intergenic 45.0%
! GACCAGGTTGAAGATATAGC+TGG + Chr1:68350218-68350237 MsG0180003799.01.T01:CDS 45.0%
! GCCAGCCCTGATATGTTTTT+GGG + Chr1:68352214-68352233 MsG0180003799.01.T01:intron 45.0%
! GGTTCACCGATTGGACAAAA+CGG + Chr1:68354499-68354518 MsG0180003799.01.T01:three_prime_UTR 45.0%
! GTAATGACAGGGTGGGTTTA+GGG - Chr1:68352171-68352190 None:intergenic 45.0%
! TGATGGTTTGGCTCCTAAAG+TGG + Chr1:68351784-68351803 MsG0180003799.01.T01:CDS 45.0%
! TGTAATGACAGGGTGGGTTT+AGG - Chr1:68352172-68352191 None:intergenic 45.0%
! TTTTTCTGGACTGATCCTGC+TGG + Chr1:68350795-68350814 MsG0180003799.01.T01:intron 45.0%
!! CATTTTGGGTAAGCCGAAGT+CGG + Chr1:68352251-68352270 MsG0180003799.01.T01:intron 45.0%
!! GAAGGCACCAATGTTGATCA+AGG + Chr1:68353980-68353999 MsG0180003799.01.T01:CDS 45.0%
!! GAGTGGAGTGAGGTTCTAAA+TGG + Chr1:68352825-68352844 MsG0180003799.01.T01:intron 45.0%
!! TGGATTACCTCGTTTTGACC+GGG - Chr1:68349758-68349777 None:intergenic 45.0%
!!! GCCCTGATATGTTTTTGGGT+TGG + Chr1:68352218-68352237 MsG0180003799.01.T01:intron 45.0%
!! AAATAAAAATAAAAATTCTA+GGG + Chr1:68349283-68349302 MsG0180003799.01.T01:five_prime_UTR 5.0%
!!! TTTATTTTTATTTTTAAAAG+TGG + Chr1:68350976-68350995 MsG0180003799.01.T01:intron 5.0%
AACACAAGAGGATCCTCGAG+AGG + Chr1:68352088-68352107 MsG0180003799.01.T01:CDS 50.0%
AACTGGCCACCAGACCAATT+TGG + Chr1:68350829-68350848 MsG0180003799.01.T01:intron 50.0%
ACCGGGGAATGCATCTTTGA+TGG - Chr1:68349741-68349760 None:intergenic 50.0%
ACTCTGGATCGTAAGACTGC+TGG + Chr1:68351376-68351395 MsG0180003799.01.T01:CDS 50.0%
ACTGGCCACCAGACCAATTT+GGG + Chr1:68350830-68350849 MsG0180003799.01.T01:intron 50.0%
AGTTTACCAGTCCAACCAGC+AGG - Chr1:68350813-68350832 None:intergenic 50.0%
ATCCAACGCCCAAATTGGTC+TGG - Chr1:68350841-68350860 None:intergenic 50.0%
CCGACATCCAGAAAATTGGC+AGG - Chr1:68353105-68353124 None:intergenic 50.0%
CGCCTTCACTTTGTCATCAG+CGG - Chr1:68353425-68353444 None:intergenic 50.0%
GCCATCAAAGATGCATTCCC+CGG + Chr1:68349737-68349756 MsG0180003799.01.T01:CDS 50.0%
GTGATGAGGAGTGGTGTAAC+TGG + Chr1:68350092-68350111 MsG0180003799.01.T01:intron 50.0%
TTATCAGCTGTCTCCGCCAT+GGG - Chr1:68351984-68352003 None:intergenic 50.0%
! AGGGTTAGCAATGGCCACAA+TGG + Chr1:68353053-68353072 MsG0180003799.01.T01:CDS 50.0%
! CGGTACTCCTGCCAATTTTC+TGG + Chr1:68353095-68353114 MsG0180003799.01.T01:CDS 50.0%
! GAATGGAGCAGGGTTAGCAA+TGG + Chr1:68353044-68353063 MsG0180003799.01.T01:CDS 50.0%
! GCCAATTTTCTGGATGTCGG+TGG + Chr1:68353105-68353124 MsG0180003799.01.T01:CDS 50.0%
! GGTTTGCCAGTTTCAAGTGC+TGG - Chr1:68350919-68350938 None:intergenic 50.0%
!! CAAATTTTAGCCGGTGGACG+AGG + Chr1:68350143-68350162 MsG0180003799.01.T01:CDS 50.0%
!! CTGTTGATTCTGCCATGTGC+CGG - Chr1:68349478-68349497 None:intergenic 50.0%
!! GGATTACCTCGTTTTGACCG+GGG - Chr1:68349757-68349776 None:intergenic 50.0%
!! TGCCAGTTTCAAGTGCTGGA+TGG - Chr1:68350915-68350934 None:intergenic 50.0%
!! TGCTGGTTGGACTGGTAAAC+TGG + Chr1:68350812-68350831 MsG0180003799.01.T01:intron 50.0%
ACTCGTGGATGTTGAGACGG+CGG - Chr1:68349503-68349522 None:intergenic 55.0%
CACCAGACCAATTTGGGCGT+TGG + Chr1:68350836-68350855 MsG0180003799.01.T01:intron 55.0%
GCTGCATGGTGAATGGAGCA+GGG + Chr1:68353034-68353053 MsG0180003799.01.T01:CDS 55.0%
GGATCGTAAGACTGCTGGTC+CGG + Chr1:68351381-68351400 MsG0180003799.01.T01:CDS 55.0%
GTTATCAGCTGTCTCCGCCA+TGG - Chr1:68351985-68352004 None:intergenic 55.0%
TCTGGACTGATCCTGCTGGT+TGG + Chr1:68350799-68350818 MsG0180003799.01.T01:intron 55.0%
TGCATTCCCCGGTCAAAACG+AGG + Chr1:68349748-68349767 MsG0180003799.01.T01:CDS 55.0%
TTAGCCGGTGGACGAGGATT+GGG + Chr1:68350149-68350168 MsG0180003799.01.T01:CDS 55.0%
TTTAGCCGGTGGACGAGGAT+TGG + Chr1:68350148-68350167 MsG0180003799.01.T01:CDS 55.0%
! ACTGATCCTGCTGGTTGGAC+TGG + Chr1:68350804-68350823 MsG0180003799.01.T01:intron 55.0%
! CAACGCCCAAATTGGTCTGG+TGG - Chr1:68350838-68350857 None:intergenic 55.0%
! TAACGTTCCCAGAGGCGTAG+CGG + Chr1:68349688-68349707 MsG0180003799.01.T01:CDS 55.0%
!! TGGTGCTGCCTCTGAAAACC+AGG + Chr1:68353125-68353144 MsG0180003799.01.T01:CDS 55.0%
ACACCCTTTGGATCCCACCG+TGG + Chr1:68350690-68350709 MsG0180003799.01.T01:intron 60.0%
AGTCCCACGGTGGGATCCAA+AGG - Chr1:68350697-68350716 None:intergenic 60.0%
AGTCCCCAATCCTCGTCCAC+CGG - Chr1:68350156-68350175 None:intergenic 60.0%
CACCCTTTGGATCCCACCGT+GGG + Chr1:68350691-68350710 MsG0180003799.01.T01:intron 60.0%
CGAGAGGGACCTGATACTCG+TGG - Chr1:68349518-68349537 None:intergenic 60.0%
GAGGAAACCGCTACGCCTCT+GGG - Chr1:68349698-68349717 None:intergenic 60.0%
GGATCAGGTGGCTGCTGCAA+AGG + Chr1:68352975-68352994 MsG0180003799.01.T01:intron 60.0%
GGCTGCATGGTGAATGGAGC+AGG + Chr1:68353033-68353052 MsG0180003799.01.T01:CDS 60.0%
GTCCCACGGTGGGATCCAAA+GGG - Chr1:68350696-68350715 None:intergenic 60.0%
TAGCCGGTGGACGAGGATTG+GGG + Chr1:68350150-68350169 MsG0180003799.01.T01:CDS 60.0%
TGAGGAAACCGCTACGCCTC+TGG - Chr1:68349699-68349718 None:intergenic 60.0%
! ATTCTGCCATGTGCCGGCGA+CGG - Chr1:68349472-68349491 None:intergenic 60.0%
!! AGGGCTGGCTAGAAAACCCC+TGG - Chr1:68352203-68352222 None:intergenic 60.0%
!! GAGCGGGATAGTGCCGACTT+CGG - Chr1:68352267-68352286 None:intergenic 60.0%
TCTCGCTCTCTCTCCGTCGC+CGG + Chr1:68349456-68349475 MsG0180003799.01.T01:CDS 65.0%
CTCTCTCCGTCGCCGGCACA+TGG + Chr1:68349463-68349482 MsG0180003799.01.T01:CDS 70.0%
Chromosome Type Strat End Strand Name
Chr1 gene 68349275 68354579 68349275 ID=MsG0180003799.01;Name=MsG0180003799.01
Chr1 mRNA 68349275 68354579 68349275 ID=MsG0180003799.01.T01;Parent=MsG0180003799.01;Name=MsG0180003799.01.T01;_AED=0.43;_eAED=0.43;_QI=151|1|1|1|0.90|0.91|12|354|421
Chr1 exon 68349275 68349527 68349275 ID=MsG0180003799.01.T01:exon:5847;Parent=MsG0180003799.01.T01
Chr1 exon 68349659 68349769 68349659 ID=MsG0180003799.01.T01:exon:5848;Parent=MsG0180003799.01.T01
Chr1 exon 68350128 68350239 68350128 ID=MsG0180003799.01.T01:exon:5849;Parent=MsG0180003799.01.T01
Chr1 exon 68350459 68350523 68350459 ID=MsG0180003799.01.T01:exon:5850;Parent=MsG0180003799.01.T01
Chr1 exon 68351325 68351402 68351325 ID=MsG0180003799.01.T01:exon:5851;Parent=MsG0180003799.01.T01
Chr1 exon 68351582 68351656 68351582 ID=MsG0180003799.01.T01:exon:5852;Parent=MsG0180003799.01.T01
Chr1 exon 68351731 68351883 68351731 ID=MsG0180003799.01.T01:exon:5853;Parent=MsG0180003799.01.T01
Chr1 exon 68351975 68352109 68351975 ID=MsG0180003799.01.T01:exon:5854;Parent=MsG0180003799.01.T01
Chr1 exon 68352982 68353146 68352982 ID=MsG0180003799.01.T01:exon:5855;Parent=MsG0180003799.01.T01
Chr1 exon 68353397 68353519 68353397 ID=MsG0180003799.01.T01:exon:5856;Parent=MsG0180003799.01.T01
Chr1 exon 68353947 68354018 68353947 ID=MsG0180003799.01.T01:exon:5857;Parent=MsG0180003799.01.T01
Chr1 exon 68354151 68354579 68354151 ID=MsG0180003799.01.T01:exon:5858;Parent=MsG0180003799.01.T01
Chr1 five_prime_UTR 68349275 68349425 68349275 ID=MsG0180003799.01.T01:five_prime_utr;Parent=MsG0180003799.01.T01
Chr1 CDS 68349426 68349527 68349426 ID=MsG0180003799.01.T01:cds;Parent=MsG0180003799.01.T01
Chr1 CDS 68349659 68349769 68349659 ID=MsG0180003799.01.T01:cds;Parent=MsG0180003799.01.T01
Chr1 CDS 68350128 68350239 68350128 ID=MsG0180003799.01.T01:cds;Parent=MsG0180003799.01.T01
Chr1 CDS 68350459 68350523 68350459 ID=MsG0180003799.01.T01:cds;Parent=MsG0180003799.01.T01
Chr1 CDS 68351325 68351402 68351325 ID=MsG0180003799.01.T01:cds;Parent=MsG0180003799.01.T01
Chr1 CDS 68351582 68351656 68351582 ID=MsG0180003799.01.T01:cds;Parent=MsG0180003799.01.T01
Chr1 CDS 68351731 68351883 68351731 ID=MsG0180003799.01.T01:cds;Parent=MsG0180003799.01.T01
Chr1 CDS 68351975 68352109 68351975 ID=MsG0180003799.01.T01:cds;Parent=MsG0180003799.01.T01
Chr1 CDS 68352982 68353146 68352982 ID=MsG0180003799.01.T01:cds;Parent=MsG0180003799.01.T01
Chr1 CDS 68353397 68353519 68353397 ID=MsG0180003799.01.T01:cds;Parent=MsG0180003799.01.T01
Chr1 CDS 68353947 68354018 68353947 ID=MsG0180003799.01.T01:cds;Parent=MsG0180003799.01.T01
Chr1 CDS 68354151 68354225 68354151 ID=MsG0180003799.01.T01:cds;Parent=MsG0180003799.01.T01
Chr1 three_prime_UTR 68354226 68354579 68354226 ID=MsG0180003799.01.T01:three_prime_utr;Parent=MsG0180003799.01.T01
Gene Sequence

>MsG0180003799.01.T01

ATGGTCAGAGGATCGCTCAACAAACTCGTCTCTCGCTCTCTCTCCGTCGCCGGCACATGGCAGAATCAACAGCTCCGCCGTCTCAACATCCACGAGTATCAGGGTGCTGAATTGATGAGCAAATATGGAGTTAACGTTCCCAGAGGCGTAGCGGTTTCCTCAGTTGAAGAAGTCAGAAAAGCCATCAAAGATGCATTCCCCGGTCAAAACGAGTTGGTGGTTAAGAGTCAAATTTTAGCCGGTGGACGAGGATTGGGGACTTTCAAAAGTGGTTTTCAGGGAGGAGTGCACATTGTTAAGACTGACCAGGTTGAAGATATAGCTGGGAAGATGCTTGGGCAGATACTAGTTACAAAACAGTCAGGTCCTCAGGGAAAAATTGTTAGCAAGGTTTACTTGTGTGAGAAGCTGTCGCTTGTGAATGAAATGTACTTTGCTATAACTCTGGATCGTAAGACTGCTGGTCCGCTTATTATTGCTTGTAAAAAGGGAGGAACCAGCATTGAAGACCTTGCAGAAAAATTTCCAGACATGATTATTAAGGTACCTGTTGATGTTTTTGAAGGACTTACTGATGAAGATGCTGCAAAGGTTGTTGATGGTTTGGCTCCTAAAGTGGCTGATAGAAATCAATCAATTGAACAAGTGAAGAATTTGTATAAACTTTTTGTTGATTCTGACTGCACTCTTTTGGAAATCAATCCCATGGCGGAGACAGCTGATAACCAACTAGTAGCTGCTGATGCTAAGTTGAATTTCGATGATAATGCCGCATATCGCCAGAAAGAGATATTCAAACTTCGTGATACAACACAAGAGGATCCTCGAGAGGTGGCTGCTGCAAAGGCAGATTTAAATTATATTGGGTTAGATGGAGAAATTGGCTGCATGGTGAATGGAGCAGGGTTAGCAATGGCCACAATGGATATAATTAAGTTGCATGGCGGTACTCCTGCCAATTTTCTGGATGTCGGTGGTGCTGCCTCTGAAAACCAGGTGGTTGAAGCATTTAAAATATTAACCGCTGATGACAAAGTGAAGGCGATTTTGGTGAACATCTTTGGTGGTATCATGAAGTGTGATGTTATAGCAAGTGGAATAGTGAATGCTGCAAAGCAGGTTGCACTAAAAGTGCCAGTAATAGTTCGTCTTGAAGGCACCAATGTTGATCAAGGGAAAAGCATTCTGAAGGAAAGTGGTATGGCATTAATAACGGCTGAAGATTTGGATGATGCAGCTCAAAAAGCAGTGAAAGCTTACAAATGA

Protein sequence

>MsG0180003799.01.T01

MVRGSLNKLVSRSLSVAGTWQNQQLRRLNIHEYQGAELMSKYGVNVPRGVAVSSVEEVRKAIKDAFPGQNELVVKSQILAGGRGLGTFKSGFQGGVHIVKTDQVEDIAGKMLGQILVTKQSGPQGKIVSKVYLCEKLSLVNEMYFAITLDRKTAGPLIIACKKGGTSIEDLAEKFPDMIIKVPVDVFEGLTDEDAAKVVDGLAPKVADRNQSIEQVKNLYKLFVDSDCTLLEINPMAETADNQLVAADAKLNFDDNAAYRQKEIFKLRDTTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGAASENQVVEAFKILTADDKVKAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVIVRLEGTNVDQGKSILKESGMALITAEDLDDAAQKAVKAYK*