Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880047289.01.T01 | XP_003609917.1 | 97.101 | 69 | 2 | 0 | 3 | 71 | 2 | 70 | 3.38E-42 | 148 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880047289.01.T01 | Q6FQJ1 | 43.077 | 65 | 37 | 0 | 5 | 69 | 164 | 228 | 2.13E-16 | 74.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880047289.01.T01 | G7JR47 | 97.101 | 69 | 2 | 0 | 3 | 71 | 2 | 70 | 1.61e-42 | 148 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048058.01 | MsG0880047289.01 | 0.826789 | 2.236577e-54 | 2.118598e-51 |
| MsG0080048374.01 | MsG0880047289.01 | 0.813828 | 2.100235e-51 | 1.386112e-48 |
| MsG0080048602.01 | MsG0880047289.01 | 0.808278 | 3.350370e-50 | 1.907719e-47 |
| MsG0180000146.01 | MsG0880047289.01 | 0.818098 | 2.340324e-52 | 1.735376e-49 |
| MsG0180000555.01 | MsG0880047289.01 | 0.825134 | 5.530120e-54 | 4.997531e-51 |
| MsG0180000741.01 | MsG0880047289.01 | 0.840108 | 1.060330e-57 | 1.495123e-54 |
| MsG0180001173.01 | MsG0880047289.01 | 0.823158 | 1.609870e-53 | 1.375245e-50 |
| MsG0180002074.01 | MsG0880047289.01 | 0.840369 | 9.064720e-58 | 1.288457e-54 |
| MsG0880044075.01 | MsG0880047289.01 | 0.824927 | 6.191702e-54 | 5.562427e-51 |
| MsG0880044917.01 | MsG0880047289.01 | 0.808512 | 2.986232e-50 | 1.710757e-47 |
| MsG0880045769.01 | MsG0880047289.01 | 0.802627 | 5.129346e-49 | 2.524707e-46 |
| MsG0880045841.01 | MsG0880047289.01 | 0.813483 | 2.501620e-51 | 1.635746e-48 |
| MsG0880046206.01 | MsG0880047289.01 | 0.808235 | 3.421523e-50 | 1.945988e-47 |
| MsG0880046762.01 | MsG0880047289.01 | 0.804898 | 1.732112e-49 | 9.038317e-47 |
| MsG0880046893.01 | MsG0880047289.01 | 0.801094 | 1.058885e-48 | 5.013517e-46 |
| MsG0880047289.01 | MsG0880047293.01 | 0.840390 | 8.948645e-58 | 1.272829e-54 |
| MsG0880047289.01 | MsG0880047353.01 | 0.838043 | 3.635703e-57 | 4.811627e-54 |
| MsG0180003190.01 | MsG0880047289.01 | 0.800899 | 1.160759e-48 | 5.468625e-46 |
| MsG0180003303.01 | MsG0880047289.01 | 0.843428 | 1.409753e-58 | 2.205054e-55 |
| MsG0180003744.01 | MsG0880047289.01 | 0.800403 | 1.465388e-48 | 6.817173e-46 |
| MsG0180003799.01 | MsG0880047289.01 | 0.842148 | 3.085284e-58 | 4.635396e-55 |
| MsG0180003937.01 | MsG0880047289.01 | 0.806167 | 9.381448e-50 | 5.057096e-47 |
| MsG0180004139.01 | MsG0880047289.01 | 0.829152 | 6.039285e-55 | 6.129369e-52 |
| MsG0180004383.01 | MsG0880047289.01 | 0.815525 | 8.842278e-52 | 6.110942e-49 |
| MsG0180004437.01 | MsG0880047289.01 | 0.840458 | 8.589597e-58 | 1.224312e-54 |
| MsG0180004598.01 | MsG0880047289.01 | 0.868129 | 8.214867e-66 | 2.938956e-62 |
| MsG0180004645.01 | MsG0880047289.01 | 0.800220 | 1.596350e-48 | 7.391980e-46 |
| MsG0180004989.01 | MsG0880047289.01 | 0.834845 | 2.368182e-56 | 2.844745e-53 |
| MsG0180005026.01 | MsG0880047289.01 | 0.821590 | 3.723270e-53 | 3.041887e-50 |
| MsG0180005443.01 | MsG0880047289.01 | 0.813208 | 2.875198e-51 | 1.865813e-48 |
| MsG0180005451.01 | MsG0880047289.01 | 0.846207 | 2.510424e-59 | 4.288338e-56 |
| MsG0180005846.01 | MsG0880047289.01 | 0.811692 | 6.164290e-51 | 3.841211e-48 |
| MsG0180005985.01 | MsG0880047289.01 | 0.862595 | 4.532949e-64 | 1.334782e-60 |
| MsG0280006304.01 | MsG0880047289.01 | 0.805986 | 1.024316e-49 | 5.496181e-47 |
| MsG0280006367.01 | MsG0880047289.01 | 0.819230 | 1.295184e-52 | 9.909145e-50 |
| MsG0280006432.01 | MsG0880047289.01 | 0.816277 | 6.009083e-52 | 4.239350e-49 |
| MsG0780040687.01 | MsG0880047289.01 | 0.848388 | 6.325999e-60 | 1.159057e-56 |
| MsG0780040854.01 | MsG0880047289.01 | 0.847593 | 1.048271e-59 | 1.872495e-56 |
| MsG0780041310.01 | MsG0880047289.01 | 0.853016 | 3.156209e-61 | 6.722848e-58 |
| MsG0780041371.01 | MsG0880047289.01 | 0.839056 | 1.991191e-57 | 2.717632e-54 |
| MsG0880042206.01 | MsG0880047289.01 | 0.814110 | 1.820385e-51 | 1.210630e-48 |
| MsG0880042329.01 | MsG0880047289.01 | 0.825002 | 5.942537e-54 | 5.350145e-51 |
| MsG0880042547.01 | MsG0880047289.01 | 0.811809 | 5.815122e-51 | 3.634943e-48 |
| MsG0880042552.01 | MsG0880047289.01 | 0.808138 | 3.588231e-50 | 2.035556e-47 |
| MsG0880042760.01 | MsG0880047289.01 | 0.806157 | 9.427384e-50 | 5.080528e-47 |
| MsG0880042838.01 | MsG0880047289.01 | 0.849094 | 4.030304e-60 | 7.556333e-57 |
| MsG0880042983.01 | MsG0880047289.01 | 0.811794 | 5.857144e-51 | 3.659864e-48 |
| MsG0880043522.01 | MsG0880047289.01 | 0.802780 | 4.768184e-49 | 2.356252e-46 |
| MsG0880043533.01 | MsG0880047289.01 | 0.830056 | 3.639589e-55 | 3.792287e-52 |
| MsG0880043750.01 | MsG0880047289.01 | 0.814563 | 1.445878e-51 | 9.734672e-49 |
| MsG0280010735.01 | MsG0880047289.01 | 0.858778 | 6.519866e-63 | 1.683224e-59 |
| MsG0280010866.01 | MsG0880047289.01 | 0.845604 | 3.660548e-59 | 6.132811e-56 |
| MsG0280011075.01 | MsG0880047289.01 | 0.836896 | 7.151345e-57 | 9.137571e-54 |
| MsG0280011085.01 | MsG0880047289.01 | 0.870277 | 1.647574e-66 | 6.372302e-63 |
| MsG0280011293.01 | MsG0880047289.01 | 0.808539 | 2.947661e-50 | 1.689826e-47 |
| MsG0280011336.01 | MsG0880047289.01 | 0.847787 | 9.270275e-60 | 1.666064e-56 |
| MsG0380011721.01 | MsG0880047289.01 | 0.833728 | 4.514717e-56 | 5.244268e-53 |
| MsG0380014576.01 | MsG0880047289.01 | 0.837790 | 4.223366e-57 | 5.546357e-54 |
| MsG0680031063.01 | MsG0880047289.01 | 0.803755 | 2.995912e-49 | 1.517848e-46 |
| MsG0680031508.01 | MsG0880047289.01 | 0.827129 | 1.854735e-54 | 1.774441e-51 |
| MsG0680034757.01 | MsG0880047289.01 | 0.839773 | 1.296448e-57 | 1.808836e-54 |
| MsG0480018846.01 | MsG0880047289.01 | 0.814939 | 1.193158e-51 | 8.114623e-49 |
| MsG0480019170.01 | MsG0880047289.01 | 0.820111 | 8.153106e-53 | 6.393944e-50 |
| MsG0480019395.01 | MsG0880047289.01 | 0.808248 | 3.400442e-50 | 1.934681e-47 |
| MsG0480020144.01 | MsG0880047289.01 | 0.807282 | 5.455442e-50 | 3.026353e-47 |
| MsG0480020242.01 | MsG0880047289.01 | 0.819223 | 1.300030e-52 | 9.944184e-50 |
| MsG0480020917.01 | MsG0880047289.01 | 0.804532 | 2.064567e-49 | 1.067037e-46 |
| MsG0480021216.01 | MsG0880047289.01 | 0.877988 | 4.039935e-69 | 2.073597e-65 |
| MsG0480021900.01 | MsG0880047289.01 | 0.815643 | 8.321492e-52 | 5.769894e-49 |
| MsG0480021914.01 | MsG0880047289.01 | 0.817405 | 3.354165e-52 | 2.440507e-49 |
| MsG0480022228.01 | MsG0880047289.01 | 0.846729 | 1.808676e-59 | 3.142717e-56 |
| MsG0480022318.01 | MsG0880047289.01 | 0.807729 | 4.384859e-50 | 2.460872e-47 |
| MsG0480022464.01 | MsG0880047289.01 | 0.818420 | 1.978309e-52 | 1.480224e-49 |
| MsG0480022552.01 | MsG0880047289.01 | 0.828858 | 7.114285e-55 | 7.157435e-52 |
| MsG0480022597.01 | MsG0880047289.01 | 0.808187 | 3.502815e-50 | 1.989729e-47 |
| MsG0480022598.01 | MsG0880047289.01 | 0.856796 | 2.524862e-62 | 6.096634e-59 |
| MsG0480022717.01 | MsG0880047289.01 | 0.803793 | 2.942277e-49 | 1.492122e-46 |
| MsG0480022719.01 | MsG0880047289.01 | 0.862669 | 4.303019e-64 | 1.270217e-60 |
| MsG0480023053.01 | MsG0880047289.01 | 0.806219 | 9.149478e-50 | 4.938583e-47 |
| MsG0480023500.01 | MsG0880047289.01 | 0.802074 | 6.667013e-49 | 3.235685e-46 |
| MsG0580024157.01 | MsG0880047289.01 | 0.824102 | 9.682487e-54 | 8.494290e-51 |
| MsG0580024205.01 | MsG0880047289.01 | 0.826113 | 3.241588e-54 | 3.011975e-51 |
| MsG0580024311.01 | MsG0880047289.01 | 0.829388 | 5.294555e-55 | 5.411184e-52 |
| MsG0580024323.01 | MsG0880047289.01 | 0.801914 | 7.191273e-49 | 3.475917e-46 |
| MsG0580024721.01 | MsG0880047289.01 | 0.801739 | 7.811816e-49 | 3.758922e-46 |
| MsG0580024770.01 | MsG0880047289.01 | 0.811882 | 5.603924e-51 | 3.509761e-48 |
| MsG0580024959.01 | MsG0880047289.01 | 0.817451 | 3.276224e-52 | 2.386842e-49 |
| MsG0580024960.01 | MsG0880047289.01 | 0.807515 | 4.868772e-50 | 2.717305e-47 |
| MsG0580025128.01 | MsG0880047289.01 | 0.844888 | 5.719629e-59 | 9.365121e-56 |
| MsG0580025900.01 | MsG0880047289.01 | 0.812963 | 3.253929e-51 | 2.097654e-48 |
| MsG0380015426.01 | MsG0880047289.01 | 0.806338 | 8.633539e-50 | 4.674062e-47 |
| MsG0380015495.01 | MsG0880047289.01 | 0.804387 | 2.213210e-49 | 1.139634e-46 |
| MsG0380015607.01 | MsG0880047289.01 | 0.812521 | 4.066051e-51 | 2.591002e-48 |
| MsG0380015639.01 | MsG0880047289.01 | 0.803692 | 3.087458e-49 | 1.561673e-46 |
| MsG0380015702.01 | MsG0880047289.01 | 0.803086 | 4.122034e-49 | 2.052683e-46 |
| MsG0380015992.01 | MsG0880047289.01 | 0.800193 | 1.616251e-48 | 7.478980e-46 |
| MsG0380016510.01 | MsG0880047289.01 | 0.819011 | 1.452822e-52 | 1.104943e-49 |
| MsG0380016589.01 | MsG0880047289.01 | 0.847622 | 1.029214e-59 | 1.840122e-56 |
| MsG0380017045.01 | MsG0880047289.01 | 0.823779 | 1.152400e-53 | 1.001983e-50 |
| MsG0380017195.01 | MsG0880047289.01 | 0.809739 | 1.630520e-50 | 9.650506e-48 |
| MsG0380017410.01 | MsG0880047289.01 | 0.821836 | 3.266840e-53 | 2.687874e-50 |
| MsG0380017643.01 | MsG0880047289.01 | 0.806733 | 7.128733e-50 | 3.898577e-47 |
| MsG0380018015.01 | MsG0880047289.01 | 0.818918 | 1.525459e-52 | 1.157201e-49 |
| MsG0480018256.01 | MsG0880047289.01 | 0.847941 | 8.409127e-60 | 1.518758e-56 |
| MsG0580029009.01 | MsG0880047289.01 | 0.814926 | 1.201001e-51 | 8.164978e-49 |
| MsG0580029036.01 | MsG0880047289.01 | 0.800328 | 1.517343e-48 | 7.045713e-46 |
| MsG0580029371.01 | MsG0880047289.01 | 0.852319 | 4.992297e-61 | 1.039254e-57 |
| MsG0680030321.01 | MsG0880047289.01 | 0.831043 | 2.087970e-55 | 2.239330e-52 |
| MsG0680030684.01 | MsG0880047289.01 | 0.812128 | 4.954169e-51 | 3.123727e-48 |
| MsG0280006692.01 | MsG0880047289.01 | 0.823346 | 1.455159e-53 | 1.249608e-50 |
| MsG0280007048.01 | MsG0880047289.01 | 0.845351 | 4.286733e-59 | 7.124024e-56 |
| MsG0280007726.01 | MsG0880047289.01 | 0.805165 | 1.523106e-49 | 8.001580e-47 |
| MsG0280007790.01 | MsG0880047289.01 | 0.850879 | 1.276219e-60 | 2.536222e-57 |
| MsG0280007819.01 | MsG0880047289.01 | 0.829339 | 5.441980e-55 | 5.554333e-52 |
| MsG0280009386.01 | MsG0880047289.01 | 0.881240 | 2.830223e-70 | 1.645300e-66 |
| MsG0280009509.01 | MsG0880047289.01 | 0.818184 | 2.237427e-52 | 1.663122e-49 |
| MsG0280009774.01 | MsG0880047289.01 | 0.843921 | 1.040442e-58 | 1.652925e-55 |
| MsG0280010239.01 | MsG0880047289.01 | 0.800158 | 1.643168e-48 | 7.596528e-46 |
| MsG0680035681.01 | MsG0880047289.01 | 0.810916 | 9.083428e-51 | 5.546113e-48 |
| MsG0680035737.01 | MsG0880047289.01 | 0.819595 | 1.069245e-52 | 8.264386e-50 |
| MsG0680035874.01 | MsG0880047289.01 | 0.807487 | 4.935019e-50 | 2.752263e-47 |
| MsG0780037975.01 | MsG0880047289.01 | 0.801246 | 9.855402e-49 | 4.683953e-46 |
| MsG0780039530.01 | MsG0880047289.01 | 0.807167 | 5.769124e-50 | 3.190723e-47 |
| MsG0780039587.01 | MsG0880047289.01 | 0.815336 | 9.740772e-52 | 6.697025e-49 |
| MsG0780039654.01 | MsG0880047289.01 | 0.812297 | 4.551685e-51 | 2.883134e-48 |
| MsG0780039655.01 | MsG0880047289.01 | 0.813103 | 3.032171e-51 | 1.962005e-48 |
| MsG0780039712.01 | MsG0880047289.01 | 0.814299 | 1.653251e-51 | 1.105205e-48 |
| MsG0780040027.01 | MsG0880047289.01 | 0.815607 | 8.478841e-52 | 5.873221e-49 |
| MsG0780040047.01 | MsG0880047289.01 | 0.808172 | 3.528806e-50 | 2.003763e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880047289.01.T01 | MTR_4g124370 | 97.101 | 69 | 2 | 0 | 3 | 71 | 2 | 70 | 4.09e-46 | 148 |
| MsG0880047289.01.T01 | MTR_4g124370 | 97.101 | 69 | 2 | 0 | 3 | 71 | 2 | 70 | 4.12e-46 | 148 |
| MsG0880047289.01.T01 | MTR_4g124370 | 97.101 | 69 | 2 | 0 | 3 | 71 | 2 | 70 | 4.74e-46 | 148 |
| MsG0880047289.01.T01 | MTR_4g124370 | 97.101 | 69 | 2 | 0 | 3 | 71 | 2 | 70 | 4.97e-46 | 148 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 19 sgRNAs with CRISPR-Local
Find 37 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAATTAGTATATAAGAAAT+TGG | 0.152950 | 8:+84214203 | MsG0880047289.01.T01:five_prime_UTR |
| CAACACATCGTGCTGCTTCT+TGG | 0.262025 | 8:-84214285 | None:intergenic |
| ATGTAGGCTTTACCACAATT+TGG | 0.291221 | 8:+84214799 | MsG0880047289.01.T01:intron |
| GTTGCAGTTTCAACACCTTC+AGG | 0.398198 | 8:+84214314 | MsG0880047289.01.T01:CDS |
| AAATTAGTATATAAGAAATT+GGG | 0.445778 | 8:+84214204 | MsG0880047289.01.T01:five_prime_UTR |
| CGAACATTCATCGGATCAAA+TGG | 0.459353 | 8:+84214695 | MsG0880047289.01.T01:CDS |
| AGCATCATTGTCGTTGTTGT+GGG | 0.498777 | 8:+84214658 | MsG0880047289.01.T01:intron |
| CAGCATCATTGTCGTTGTTG+TGG | 0.502093 | 8:+84214657 | MsG0880047289.01.T01:intron |
| TCATTGCTTCATTGAAGAAG+AGG | 0.508340 | 8:-84214126 | None:intergenic |
| TTTCAACACCTTCAGGAGAC+GGG | 0.531812 | 8:+84214321 | MsG0880047289.01.T01:CDS |
| CATCGTGCTGCTTCTTGGAA+AGG | 0.541545 | 8:-84214280 | None:intergenic |
| ATTGTGCAGCGAACATTCAT+CGG | 0.567403 | 8:+84214686 | MsG0880047289.01.T01:CDS |
| GTTTCAACACCTTCAGGAGA+CGG | 0.574200 | 8:+84214320 | MsG0880047289.01.T01:CDS |
| GCTGCTTCTTGGAAAGGAGG+AGG | 0.581803 | 8:-84214274 | None:intergenic |
| CGTGCTGCTTCTTGGAAAGG+AGG | 0.583012 | 8:-84214277 | None:intergenic |
| AAAGCATACCCGTCTCCTGA+AGG | 0.594623 | 8:-84214329 | None:intergenic |
| TTCGAGTAAATGCCAAATTG+TGG | 0.602887 | 8:-84214811 | None:intergenic |
| CAAATCATTGCAGAGTACAA+AGG | 0.608841 | 8:-84214155 | None:intergenic |
| CTGATTGTTTCAACAACTCG+CGG | 0.618861 | 8:+84214848 | MsG0880047289.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATTAGTATATAAGAAAT+TGG | + | Chr8:84214203-84214222 | MsG0880047289.01.T01:five_prime_UTR | 10.0% |
| !! | AAATTAGTATATAAGAAATT+GGG | + | Chr8:84214204-84214223 | MsG0880047289.01.T01:five_prime_UTR | 10.0% |
| !! | TATTCTTAACTGATAAATTT+GGG | - | Chr8:84214443-84214462 | None:intergenic | 15.0% |
| !! | TTATTCTTAACTGATAAATT+TGG | - | Chr8:84214444-84214463 | None:intergenic | 15.0% |
| !! | TTTGATTATTCAAATTTGAT+CGG | + | Chr8:84214386-84214405 | MsG0880047289.01.T01:intron | 15.0% |
| !!! | AATTTTTGTTTTTTAACTTC+AGG | + | Chr8:84214722-84214741 | MsG0880047289.01.T01:intron | 15.0% |
| !!! | ATTATGTTTGTAAATTTTAC+TGG | + | Chr8:84214590-84214609 | MsG0880047289.01.T01:intron | 15.0% |
| !!! | ATTTTTGTTTTTTAACTTCA+GGG | + | Chr8:84214723-84214742 | MsG0880047289.01.T01:intron | 15.0% |
| !! | AGTTAGACTAAAATTTGTAT+TGG | + | Chr8:84214512-84214531 | MsG0880047289.01.T01:intron | 20.0% |
| !!! | TGACATTTTCAACAAAATTA+GGG | - | Chr8:84214239-84214258 | None:intergenic | 20.0% |
| !!! | TTGACATTTTCAACAAAATT+AGG | - | Chr8:84214240-84214259 | None:intergenic | 20.0% |
| ! | AAAATCATCTTATGCATGAA+TGG | + | Chr8:84214561-84214580 | MsG0880047289.01.T01:intron | 25.0% |
| ! | ATCAAATCAAATTCCGAAAT+TGG | - | Chr8:84214372-84214391 | None:intergenic | 25.0% |
| ! | ATCTTCTTCATTTCCAATTT+CGG | + | Chr8:84214356-84214375 | MsG0880047289.01.T01:intron | 25.0% |
| ! | CATCACTATAAAATTCATCA+AGG | - | Chr8:84214770-84214789 | None:intergenic | 25.0% |
| ! | TTATTCAAATTTGATCGGAT+CGG | + | Chr8:84214391-84214410 | MsG0880047289.01.T01:intron | 25.0% |
| !!! | AACTGATAAATTTGGGATTT+TGG | - | Chr8:84214436-84214455 | None:intergenic | 25.0% |
| !!! | AGTGATGTTTTTTTGTATGT+AGG | + | Chr8:84214783-84214802 | MsG0880047289.01.T01:intron | 25.0% |
| TAACTTCAGGGTAATATTAG+TGG | + | Chr8:84214735-84214754 | MsG0880047289.01.T01:intron | 30.0% | |
| ! | CTATACTGTATACTTTTGTG+TGG | + | Chr8:84214620-84214639 | MsG0880047289.01.T01:intron | 30.0% |
| ATGTAGGCTTTACCACAATT+TGG | + | Chr8:84214799-84214818 | MsG0880047289.01.T01:intron | 35.0% | |
| CAAATCATTGCAGAGTACAA+AGG | - | Chr8:84214158-84214177 | None:intergenic | 35.0% | |
| TCATTGCTTCATTGAAGAAG+AGG | - | Chr8:84214129-84214148 | None:intergenic | 35.0% | |
| TTCGAGTAAATGCCAAATTG+TGG | - | Chr8:84214814-84214833 | None:intergenic | 35.0% | |
| AGCATCATTGTCGTTGTTGT+GGG | + | Chr8:84214658-84214677 | MsG0880047289.01.T01:intron | 40.0% | |
| ATTGTGCAGCGAACATTCAT+CGG | + | Chr8:84214686-84214705 | MsG0880047289.01.T01:CDS | 40.0% | |
| CGAACATTCATCGGATCAAA+TGG | + | Chr8:84214695-84214714 | MsG0880047289.01.T01:CDS | 40.0% | |
| CTGATTGTTTCAACAACTCG+CGG | + | Chr8:84214848-84214867 | MsG0880047289.01.T01:CDS | 40.0% | |
| CAGCATCATTGTCGTTGTTG+TGG | + | Chr8:84214657-84214676 | MsG0880047289.01.T01:intron | 45.0% | |
| GTTGCAGTTTCAACACCTTC+AGG | + | Chr8:84214314-84214333 | MsG0880047289.01.T01:CDS | 45.0% | |
| GTTTCAACACCTTCAGGAGA+CGG | + | Chr8:84214320-84214339 | MsG0880047289.01.T01:CDS | 45.0% | |
| TTTCAACACCTTCAGGAGAC+GGG | + | Chr8:84214321-84214340 | MsG0880047289.01.T01:CDS | 45.0% | |
| AAAGCATACCCGTCTCCTGA+AGG | - | Chr8:84214332-84214351 | None:intergenic | 50.0% | |
| !! | CAACACATCGTGCTGCTTCT+TGG | - | Chr8:84214288-84214307 | None:intergenic | 50.0% |
| !! | CATCGTGCTGCTTCTTGGAA+AGG | - | Chr8:84214283-84214302 | None:intergenic | 50.0% |
| GCTGCTTCTTGGAAAGGAGG+AGG | - | Chr8:84214277-84214296 | None:intergenic | 55.0% | |
| !! | CGTGCTGCTTCTTGGAAAGG+AGG | - | Chr8:84214280-84214299 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr8 | gene | 84214109 | 84214873 | 84214109 | ID=MsG0880047289.01;Name=MsG0880047289.01 |
| Chr8 | mRNA | 84214109 | 84214873 | 84214109 | ID=MsG0880047289.01.T01;Parent=MsG0880047289.01;Name=MsG0880047289.01.T01;_AED=0.48;_eAED=0.48;_QI=144|1|0.66|1|0.5|0.66|3|0|71 |
| Chr8 | exon | 84214109 | 84214342 | 84214109 | ID=MsG0880047289.01.T01:exon:35916;Parent=MsG0880047289.01.T01 |
| Chr8 | exon | 84214660 | 84214716 | 84214660 | ID=MsG0880047289.01.T01:exon:35917;Parent=MsG0880047289.01.T01 |
| Chr8 | exon | 84214805 | 84214873 | 84214805 | ID=MsG0880047289.01.T01:exon:35918;Parent=MsG0880047289.01.T01 |
| Chr8 | five_prime_UTR | 84214109 | 84214252 | 84214109 | ID=MsG0880047289.01.T01:five_prime_utr;Parent=MsG0880047289.01.T01 |
| Chr8 | CDS | 84214253 | 84214342 | 84214253 | ID=MsG0880047289.01.T01:cds;Parent=MsG0880047289.01.T01 |
| Chr8 | CDS | 84214660 | 84214716 | 84214660 | ID=MsG0880047289.01.T01:cds;Parent=MsG0880047289.01.T01 |
| Chr8 | CDS | 84214805 | 84214873 | 84214805 | ID=MsG0880047289.01.T01:cds;Parent=MsG0880047289.01.T01 |
| Gene Sequence |
| Protein sequence |
