Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180005784.01.T01 | XP_024626891.1 | 92.558 | 215 | 16 | 0 | 17 | 231 | 21 | 235 | 1.53E-138 | 403 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180005784.01.T01 | A0A396K343 | 92.558 | 215 | 16 | 0 | 17 | 231 | 21 | 235 | 7.30e-139 | 403 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080047967.01 | MsG0180005784.01 | 0.806045 | 9.952421e-50 | 5.348138e-47 |
| MsG0180000719.01 | MsG0180005784.01 | 0.816437 | 5.533050e-52 | 3.920336e-49 |
| MsG0180001054.01 | MsG0180005784.01 | 0.817314 | 3.515793e-52 | 2.551663e-49 |
| MsG0180001072.01 | MsG0180005784.01 | 0.803826 | 2.896211e-49 | 1.470012e-46 |
| MsG0180001925.01 | MsG0180005784.01 | 0.807990 | 3.857727e-50 | 2.179903e-47 |
| MsG0180002426.01 | MsG0180005784.01 | 0.800750 | 1.244830e-48 | 5.842191e-46 |
| MsG0180004301.01 | MsG0180005784.01 | 0.806109 | 9.651529e-50 | 5.194816e-47 |
| MsG0180005223.01 | MsG0180005784.01 | 0.813437 | 2.560999e-51 | 1.672449e-48 |
| MsG0180005242.01 | MsG0180005784.01 | 0.847889 | 8.687846e-60 | 1.566533e-56 |
| MsG0180005783.01 | MsG0180005784.01 | 0.899783 | 1.406977e-77 | 1.765610e-73 |
| MsG0180005784.01 | MsG0180005847.01 | 0.833618 | 4.807700e-56 | 5.566400e-53 |
| MsG0180005784.01 | MsG0180006063.01 | 0.805162 | 1.524770e-49 | 8.009869e-47 |
| MsG0180005784.01 | MsG0280006475.01 | 0.801606 | 8.319330e-49 | 3.989682e-46 |
| MsG0180005784.01 | MsG0280009864.01 | 0.814480 | 1.508225e-51 | 1.013192e-48 |
| MsG0180005784.01 | MsG0280011066.01 | 0.803800 | 2.933076e-49 | 1.487704e-46 |
| MsG0180005784.01 | MsG0380013473.01 | 0.807545 | 4.798264e-50 | 2.679926e-47 |
| MsG0180005784.01 | MsG0380015697.01 | 0.800997 | 1.108536e-48 | 5.235728e-46 |
| MsG0180005784.01 | MsG0380016089.01 | 0.819536 | 1.102874e-52 | 8.510659e-50 |
| MsG0180005784.01 | MsG0380016096.01 | 0.811682 | 6.196637e-51 | 3.860246e-48 |
| MsG0180005784.01 | MsG0380016528.01 | 0.816773 | 4.651736e-52 | 3.326543e-49 |
| MsG0180005784.01 | MsG0380016889.01 | 0.824284 | 8.773558e-54 | 7.736486e-51 |
| MsG0180005784.01 | MsG0480018088.01 | 0.822286 | 2.568700e-53 | 2.140835e-50 |
| MsG0180005784.01 | MsG0480019051.01 | -0.821195 | 4.594984e-53 | 3.713271e-50 |
| MsG0180005784.01 | MsG0480019540.01 | 0.803330 | 3.670718e-49 | 1.839450e-46 |
| MsG0180005784.01 | MsG0480019861.01 | 0.822625 | 2.142877e-53 | 1.803347e-50 |
| MsG0180005784.01 | MsG0480021327.01 | 0.811579 | 6.525474e-51 | 4.054250e-48 |
| MsG0180005784.01 | MsG0480021331.01 | 0.800475 | 1.416697e-48 | 6.602516e-46 |
| MsG0180005784.01 | MsG0480021476.01 | 0.801407 | 9.138468e-49 | 4.360695e-46 |
| MsG0180005784.01 | MsG0480022581.01 | 0.810495 | 1.120200e-50 | 6.762599e-48 |
| MsG0180005784.01 | MsG0480023006.01 | 0.802724 | 4.898451e-49 | 2.417125e-46 |
| MsG0180005784.01 | MsG0480023152.01 | 0.812091 | 5.046810e-51 | 3.178903e-48 |
| MsG0180005784.01 | MsG0480023480.01 | 0.810214 | 1.288518e-50 | 7.720914e-48 |
| MsG0180005784.01 | MsG0480023481.01 | 0.811964 | 5.379501e-51 | 3.376704e-48 |
| MsG0180005784.01 | MsG0580024269.01 | 0.823825 | 1.124394e-53 | 9.788412e-51 |
| MsG0180005784.01 | MsG0580030237.01 | 0.802441 | 5.602565e-49 | 2.744634e-46 |
| MsG0180005784.01 | MsG0680030875.01 | 0.816865 | 4.435953e-52 | 3.180292e-49 |
| MsG0180005784.01 | MsG0780040838.01 | 0.802329 | 5.907435e-49 | 2.885871e-46 |
| MsG0180005784.01 | MsG0880045321.01 | 0.800597 | 1.337331e-48 | 6.252150e-46 |
| MsG0180005784.01 | MsG0880045374.01 | 0.826946 | 2.051419e-54 | 1.952258e-51 |
| MsG0180005784.01 | MsG0880045413.01 | 0.803686 | 3.097320e-49 | 1.566383e-46 |
| MsG0180005784.01 | MsG0880045414.01 | 0.821020 | 5.040478e-53 | 4.053794e-50 |
| MsG0180005784.01 | MsG0880046469.01 | 0.817467 | 3.249148e-52 | 2.368190e-49 |
| MsG0180005784.01 | MsG0880046630.01 | 0.809213 | 2.114226e-50 | 1.233936e-47 |
| MsG0180005784.01 | MsG0880047251.01 | 0.824938 | 6.152810e-54 | 5.529242e-51 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180005784.01.T01 | MTR_6g008890 | 34.894 | 235 | 128 | 7 | 1 | 219 | 6 | 231 | 1.71e-27 | 107 |
| MsG0180005784.01.T01 | MTR_4g071610 | 34.894 | 235 | 128 | 7 | 1 | 219 | 6 | 231 | 1.71e-27 | 107 |
| MsG0180005784.01.T01 | MTR_3g115240 | 37.624 | 101 | 61 | 1 | 45 | 143 | 65 | 165 | 2.77e-15 | 73.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180005784.01.T01 | AT2G14910 | 60.736 | 163 | 59 | 1 | 57 | 219 | 77 | 234 | 1.10e-58 | 189 |
| MsG0180005784.01.T01 | AT2G14910 | 60.736 | 163 | 59 | 1 | 57 | 219 | 77 | 234 | 1.66e-58 | 189 |
| MsG0180005784.01.T01 | AT5G14970 | 43.210 | 162 | 82 | 4 | 59 | 219 | 78 | 230 | 6.40e-27 | 106 |
| MsG0180005784.01.T01 | AT1G63610 | 37.500 | 88 | 55 | 0 | 56 | 143 | 84 | 171 | 6.38e-15 | 70.9 |
| MsG0180005784.01.T01 | AT1G63610 | 37.500 | 88 | 55 | 0 | 56 | 143 | 84 | 171 | 2.12e-14 | 70.9 |
| MsG0180005784.01.T01 | AT1G63610 | 37.500 | 88 | 55 | 0 | 56 | 143 | 84 | 171 | 5.55e-14 | 70.5 |
Find 65 sgRNAs with CRISPR-Local
Find 126 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGTAGAAATCTGCTTTAT+CGG | 0.259410 | 1:-96120963 | MsG0180005784.01.T01:intron |
| CTTCGTCTTCCCTTCTCTTT+CGG | 0.270343 | 1:+96121392 | None:intergenic |
| GCTATGAAAAGGACCATTTC+TGG | 0.273572 | 1:-96120869 | MsG0180005784.01.T01:CDS |
| TGCTGAGTATAGGCTTTGTT+TGG | 0.347450 | 1:-96119980 | MsG0180005784.01.T01:CDS |
| AGGACCATTTCTGGTATGTT+GGG | 0.354983 | 1:-96120860 | MsG0180005784.01.T01:CDS |
| AACTTAGTACTTTCTGCCTT+CGG | 0.377112 | 1:+96119919 | None:intergenic |
| CTCATTTCTTCAATGATGAC+TGG | 0.387115 | 1:-96120773 | MsG0180005784.01.T01:CDS |
| GAGAGGAAGAGAGGAGGAGG+AGG | 0.414500 | 1:+96121266 | None:intergenic |
| TGAATATTACTCACATCTAA+AGG | 0.427179 | 1:+96120920 | None:intergenic |
| GGAGGAGAGGATGGAGGGAA+GGG | 0.427494 | 1:+96121284 | None:intergenic |
| AGGAGGAGAGGATGGAGGGA+AGG | 0.429740 | 1:+96121283 | None:intergenic |
| GAGGAGGAGGAGAGGATGGA+GGG | 0.434326 | 1:+96121279 | None:intergenic |
| CAACCCCAACATACCAGAAA+TGG | 0.436781 | 1:+96120856 | None:intergenic |
| GAAGAGAAAGAGAAAGGTGT+TGG | 0.440010 | 1:-96121347 | MsG0180005784.01.T01:five_prime_UTR |
| GGAGGAGGAGGAGAGGATGG+AGG | 0.442021 | 1:+96121278 | None:intergenic |
| CATTGAAGAAATGAGTAACT+TGG | 0.446046 | 1:+96120781 | None:intergenic |
| TTCATAGCATCAGCTGTAGT+TGG | 0.452605 | 1:+96120884 | None:intergenic |
| ATGTCGTTGTTGAGGCTTTG+TGG | 0.462573 | 1:-96120814 | MsG0180005784.01.T01:CDS |
| AGAAATATATTCTTGAGCTT+CGG | 0.466226 | 1:+96119771 | None:intergenic |
| ATGGAGAGGAAGAGAGGAGG+AGG | 0.467307 | 1:+96121263 | None:intergenic |
| AAGGACCATTTCTGGTATGT+TGG | 0.467555 | 1:-96120861 | MsG0180005784.01.T01:CDS |
| TGTCGTTGTTGAGGCTTTGT+GGG | 0.467846 | 1:-96120813 | MsG0180005784.01.T01:CDS |
| AAGAGAAAGAGAAAGGTGTT+GGG | 0.476294 | 1:-96121346 | MsG0180005784.01.T01:five_prime_UTR |
| GAGAAAGAGAAGGAAGGAGA+GGG | 0.482114 | 1:+96121231 | None:intergenic |
| TAGAATTGAAGATCCTTCCT+TGG | 0.484743 | 1:-96119707 | MsG0180005784.01.T01:CDS |
| GCAGAAGCGAGAACAAGAAA+GGG | 0.487309 | 1:+96121174 | None:intergenic |
| TGCAGAAGCGAGAACAAGAA+AGG | 0.488121 | 1:+96121173 | None:intergenic |
| CATTGCGCAATGCTGAGTAT+AGG | 0.493261 | 1:-96119990 | MsG0180005784.01.T01:CDS |
| AGAGAAAGAGAAGGAAGGAG+AGG | 0.495517 | 1:+96121230 | None:intergenic |
| GGTAAAGTCGTTGGAGGAGT+GGG | 0.495967 | 1:+96121149 | None:intergenic |
| AGAAGAGAAGAGAAAGAGAA+AGG | 0.500342 | 1:-96121353 | MsG0180005784.01.T01:five_prime_UTR |
| AGAGGAGAGAAAGAGAAGGA+AGG | 0.507778 | 1:+96121225 | None:intergenic |
| AGTGTAAATGTTATTGACTT+TGG | 0.517614 | 1:-96119871 | MsG0180005784.01.T01:CDS |
| TACCTTGGAGGTAAAGTCGT+TGG | 0.519637 | 1:+96121140 | None:intergenic |
| AAGGAGAGGGACGGAAGCGA+TGG | 0.527345 | 1:+96121244 | None:intergenic |
| AAGAGAAGGAAGGAGAGGGA+CGG | 0.527623 | 1:+96121235 | None:intergenic |
| GACAGTGAAACCGAAAGAGA+AGG | 0.534994 | 1:-96121402 | MsG0180005784.01.T01:five_prime_UTR |
| TCAATTTAATGTCGTTGTTG+AGG | 0.537014 | 1:-96120822 | MsG0180005784.01.T01:CDS |
| CTACAGCTGATGCTATGAAA+AGG | 0.537612 | 1:-96120880 | MsG0180005784.01.T01:CDS |
| TCATTTCTTCAATGATGACT+GGG | 0.538264 | 1:-96120772 | MsG0180005784.01.T01:intron |
| ACAGTGAAACCGAAAGAGAA+GGG | 0.546373 | 1:-96121401 | MsG0180005784.01.T01:five_prime_UTR |
| AGGTAAAGTCGTTGGAGGAG+TGG | 0.549356 | 1:+96121148 | None:intergenic |
| ACGACATTAAATTGATCAGA+TGG | 0.549624 | 1:+96120830 | None:intergenic |
| CTTGGAGGTAAAGTCGTTGG+AGG | 0.551575 | 1:+96121143 | None:intergenic |
| ATATGGTTTAGTTACCTTGG+AGG | 0.551882 | 1:+96121128 | None:intergenic |
| GACTCTCAACTCTACATACA+TGG | 0.552730 | 1:-96121310 | MsG0180005784.01.T01:exon |
| CAGAAGCGAGAACAAGAAAG+GGG | 0.552961 | 1:+96121175 | None:intergenic |
| GAAATGAGTAACTTGGAAAG+AGG | 0.557837 | 1:+96120788 | None:intergenic |
| TTTGTAGGATTTGAGCGAAG+AGG | 0.563546 | 1:+96121207 | None:intergenic |
| ATAGCATCAGCTGTAGTTGG+CGG | 0.566459 | 1:+96120887 | None:intergenic |
| GAAGCGATGGAGAGGAAGAG+AGG | 0.566583 | 1:+96121257 | None:intergenic |
| GCGATGGAGAGGAAGAGAGG+AGG | 0.566927 | 1:+96121260 | None:intergenic |
| GGACCATTTCTGGTATGTTG+GGG | 0.572912 | 1:-96120859 | MsG0180005784.01.T01:CDS |
| GAGGGACGGAAGCGATGGAG+AGG | 0.573663 | 1:+96121249 | None:intergenic |
| ATAAAATTCTTAAAATGCCA+AGG | 0.577200 | 1:+96119690 | None:intergenic |
| AATTCTTAAAATGCCAAGGA+AGG | 0.578470 | 1:+96119694 | None:intergenic |
| GACGTTGACACTCAAGACCT+TGG | 0.593164 | 1:-96119805 | MsG0180005784.01.T01:CDS |
| CTCCAACGACTTTACCTCCA+AGG | 0.598406 | 1:-96121142 | MsG0180005784.01.T01:intron |
| GCGAAGAGGAGAGAAAGAGA+AGG | 0.603411 | 1:+96121221 | None:intergenic |
| TGAGTGTCAACGTCCTCGTG+AGG | 0.620988 | 1:+96119814 | None:intergenic |
| CAGAGATCTTGAGAAGCCGA+AGG | 0.645044 | 1:-96119935 | MsG0180005784.01.T01:CDS |
| CAAAGTTGAAAAGCCTCACG+AGG | 0.665589 | 1:-96119827 | MsG0180005784.01.T01:CDS |
| CTTCGGCAGATATTTGACCA+AGG | 0.705206 | 1:+96119788 | None:intergenic |
| TAACATTTACACTGTCACGT+AGG | 0.718366 | 1:+96119881 | None:intergenic |
| AGAAGCGAGAACAAGAAAGG+GGG | 0.727238 | 1:+96121176 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTGTTAAAATTTCATTA+TGG | + | Chr1:96120649-96120668 | None:intergenic | 10.0% |
| !! | AATTGTTAAAATTTCATTAT+GGG | + | Chr1:96120648-96120667 | None:intergenic | 10.0% |
| !! | TTCAAAAGAATTAAAAATTT+GGG | + | Chr1:96121014-96121033 | None:intergenic | 10.0% |
| !!! | ATTATAAAGTGTTTTTAATT+TGG | - | Chr1:96120546-96120565 | MsG0180005784.01.T01:intron | 10.0% |
| !! | CTTCAAAAGAATTAAAAATT+TGG | + | Chr1:96121015-96121034 | None:intergenic | 15.0% |
| !! | TCAAAAGAATTAAAAATTTG+GGG | + | Chr1:96121013-96121032 | None:intergenic | 15.0% |
| !! | AAATAAATGGACAATCTATT+CGG | - | Chr1:96120909-96120928 | MsG0180005784.01.T01:CDS | 20.0% |
| !! | AATACAAAATCTTCCTAATA+TGG | + | Chr1:96120787-96120806 | None:intergenic | 20.0% |
| !! | ATACAAAATCTTCCTAATAT+GGG | + | Chr1:96120786-96120805 | None:intergenic | 20.0% |
| !! | GATTGTCCATTTATTTATTT+AGG | + | Chr1:96120905-96120924 | None:intergenic | 20.0% |
| !!! | TCTATAGTATACCTTTTTTA+TGG | + | Chr1:96121386-96121405 | None:intergenic | 20.0% |
| !!! | TTTTTAGGTTCATTAACTAA+CGG | - | Chr1:96120070-96120089 | MsG0180005784.01.T01:intron | 20.0% |
| ! | AAGTAATGTTTATCCAAATG+GGG | - | Chr1:96121060-96121079 | MsG0180005784.01.T01:intron | 25.0% |
| ! | ACACAGCCTAAATAAATAAA+TGG | - | Chr1:96120896-96120915 | MsG0180005784.01.T01:CDS | 25.0% |
| ! | AGAAATATATTCTTGAGCTT+CGG | + | Chr1:96121341-96121360 | None:intergenic | 25.0% |
| ! | ATTCAACAGTAGTAGTAATA+TGG | + | Chr1:96120001-96120020 | None:intergenic | 25.0% |
| ! | CAAGTAATGTTTATCCAAAT+GGG | - | Chr1:96121059-96121078 | MsG0180005784.01.T01:intron | 25.0% |
| ! | TACAAAATCTTCCTAATATG+GGG | + | Chr1:96120785-96120804 | None:intergenic | 25.0% |
| ! | TCATGTGATTGATTATAAGA+AGG | - | Chr1:96120040-96120059 | MsG0180005784.01.T01:intron | 25.0% |
| ! | TCTTATAATCAATCACATGA+TGG | + | Chr1:96120040-96120059 | None:intergenic | 25.0% |
| ! | TGAATATTACTCACATCTAA+AGG | + | Chr1:96120192-96120211 | None:intergenic | 25.0% |
| ! | TTTGTAGAAATCTGCTTTAT+CGG | - | Chr1:96120146-96120165 | MsG0180005784.01.T01:intron | 25.0% |
| !! | AAATTTTCATGTTCTTGCTA+TGG | - | Chr1:96120403-96120422 | MsG0180005784.01.T01:intron | 25.0% |
| !!! | AGTGTAAATGTTATTGACTT+TGG | - | Chr1:96121238-96121257 | MsG0180005784.01.T01:CDS | 25.0% |
| !!! | TAAGAAGGAATTGACTTTTT+AGG | - | Chr1:96120055-96120074 | MsG0180005784.01.T01:intron | 25.0% |
| !!! | TTTTAGGTTCATTAACTAAC+GGG | - | Chr1:96120071-96120090 | MsG0180005784.01.T01:intron | 25.0% |
| ACGACATTAAATTGATCAGA+TGG | + | Chr1:96120282-96120301 | None:intergenic | 30.0% | |
| AGTAATGTTTATCCAAATGG+GGG | - | Chr1:96121061-96121080 | MsG0180005784.01.T01:intron | 30.0% | |
| ATAATAGTCCCCTAACTTAA+AGG | + | Chr1:96120835-96120854 | None:intergenic | 30.0% | |
| CATTGAAGAAATGAGTAACT+TGG | + | Chr1:96120331-96120350 | None:intergenic | 30.0% | |
| CCAAGTAATGTTTATCCAAA+TGG | - | Chr1:96121058-96121077 | MsG0180005784.01.T01:intron | 30.0% | |
| CCATTTGGATAAACATTACT+TGG | + | Chr1:96121061-96121080 | None:intergenic | 30.0% | |
| GTAATATGGTTTAGTTACCT+TGG | + | Chr1:96119987-96120006 | None:intergenic | 30.0% | |
| TACAGAATGTTGTCAAATTG+CGG | - | Chr1:96120603-96120622 | MsG0180005784.01.T01:intron | 30.0% | |
| TCAATTTAATGTCGTTGTTG+AGG | - | Chr1:96120287-96120306 | MsG0180005784.01.T01:intron | 30.0% | |
| TCATTTCTTCAATGATGACT+GGG | - | Chr1:96120337-96120356 | MsG0180005784.01.T01:intron | 30.0% | |
| TCGTTTGTCTTCCATAAAAA+AGG | - | Chr1:96121372-96121391 | MsG0180005784.01.T01:five_prime_UTR | 30.0% | |
| ! | ATAAACCCTACCTTTAAGTT+AGG | - | Chr1:96120822-96120841 | MsG0180005784.01.T01:CDS | 30.0% |
| ! | TAAACCCTACCTTTAAGTTA+GGG | - | Chr1:96120823-96120842 | MsG0180005784.01.T01:CDS | 30.0% |
| !!! | ATTTTTGAGTTCCCCATATT+AGG | - | Chr1:96120771-96120790 | MsG0180005784.01.T01:intron | 30.0% |
| AACTTAGTACTTTCTGCCTT+CGG | + | Chr1:96121193-96121212 | None:intergenic | 35.0% | |
| AAGCTTTCTTCATGTACTAC+AGG | - | Chr1:96121092-96121111 | MsG0180005784.01.T01:intron | 35.0% | |
| ACTCAAAAATGTATTGGAGG+AGG | + | Chr1:96120761-96120780 | None:intergenic | 35.0% | |
| AGAAGAGAAGAGAAAGAGAA+AGG | - | Chr1:96119756-96119775 | MsG0180005784.01.T01:CDS | 35.0% | |
| AGCTAATCGGATTGTTATCA+TGG | - | Chr1:96120426-96120445 | MsG0180005784.01.T01:intron | 35.0% | |
| ATATGGTTTAGTTACCTTGG+AGG | + | Chr1:96119984-96120003 | None:intergenic | 35.0% | |
| CTCAAAAATGTATTGGAGGA+GGG | + | Chr1:96120760-96120779 | None:intergenic | 35.0% | |
| CTCATTTCTTCAATGATGAC+TGG | - | Chr1:96120336-96120355 | MsG0180005784.01.T01:intron | 35.0% | |
| GAAATGAGTAACTTGGAAAG+AGG | + | Chr1:96120324-96120343 | None:intergenic | 35.0% | |
| GAACGAGAAGAAAATGCTTA+TGG | - | Chr1:96120498-96120517 | MsG0180005784.01.T01:intron | 35.0% | |
| GGAACTCAAAAATGTATTGG+AGG | + | Chr1:96120764-96120783 | None:intergenic | 35.0% | |
| TAACATTTACACTGTCACGT+AGG | + | Chr1:96121231-96121250 | None:intergenic | 35.0% | |
| TAGAATTGAAGATCCTTCCT+TGG | - | Chr1:96121402-96121421 | MsG0180005784.01.T01:five_prime_UTR | 35.0% | |
| TGGGGAACTCAAAAATGTAT+TGG | + | Chr1:96120767-96120786 | None:intergenic | 35.0% | |
| ! | AAACCCTACCTTTAAGTTAG+GGG | - | Chr1:96120824-96120843 | MsG0180005784.01.T01:CDS | 35.0% |
| ! | CGTTCTCTAGAAAACTAATG+TGG | + | Chr1:96120483-96120502 | None:intergenic | 35.0% |
| ! | GTGATAGACATTGAAGTACT+AGG | + | Chr1:96120369-96120388 | None:intergenic | 35.0% |
| !! | AAGAGAAAGAGAAAGGTGTT+GGG | - | Chr1:96119763-96119782 | MsG0180005784.01.T01:CDS | 35.0% |
| !!! | CTGTGTTTTTGAGTTTAGGA+GGG | + | Chr1:96120882-96120901 | None:intergenic | 35.0% |
| !!! | TAGGCTGTGTTTTTGAGTTT+AGG | + | Chr1:96120886-96120905 | None:intergenic | 35.0% |
| !!! | TGTGTTTTTGAGTTTAGGAG+GGG | + | Chr1:96120881-96120900 | None:intergenic | 35.0% |
| AATCTATTCGGAGAATGGAG+AGG | - | Chr1:96120921-96120940 | MsG0180005784.01.T01:CDS | 40.0% | |
| ACAGTGAAACCGAAAGAGAA+GGG | - | Chr1:96119708-96119727 | MsG0180005784.01.T01:CDS | 40.0% | |
| AGTCCCCTAACTTAAAGGTA+GGG | + | Chr1:96120830-96120849 | None:intergenic | 40.0% | |
| CTACAGCTGATGCTATGAAA+AGG | - | Chr1:96120229-96120248 | MsG0180005784.01.T01:intron | 40.0% | |
| GACTCTCAACTCTACATACA+TGG | - | Chr1:96119799-96119818 | MsG0180005784.01.T01:CDS | 40.0% | |
| GCTATGAAAAGGACCATTTC+TGG | - | Chr1:96120240-96120259 | MsG0180005784.01.T01:intron | 40.0% | |
| TAGTCCCCTAACTTAAAGGT+AGG | + | Chr1:96120831-96120850 | None:intergenic | 40.0% | |
| TGGACAATCTATTCGGAGAA+TGG | - | Chr1:96120916-96120935 | MsG0180005784.01.T01:CDS | 40.0% | |
| TGTCGACATGTTGTCAATCT+CGG | + | Chr1:96120687-96120706 | None:intergenic | 40.0% | |
| TTCATAGCATCAGCTGTAGT+TGG | + | Chr1:96120228-96120247 | None:intergenic | 40.0% | |
| TTTGTAGGATTTGAGCGAAG+AGG | + | Chr1:96119905-96119924 | None:intergenic | 40.0% | |
| ! | AAGGGGGAACGATATTTTGT+AGG | + | Chr1:96119920-96119939 | None:intergenic | 40.0% |
| ! | GAAGAGAAAGAGAAAGGTGT+TGG | - | Chr1:96119762-96119781 | MsG0180005784.01.T01:CDS | 40.0% |
| ! | GTTCTTGCTATGGAGCTAAT+CGG | - | Chr1:96120413-96120432 | MsG0180005784.01.T01:intron | 40.0% |
| !! | AAGGACCATTTCTGGTATGT+TGG | - | Chr1:96120248-96120267 | MsG0180005784.01.T01:intron | 40.0% |
| !! | AGGACCATTTCTGGTATGTT+GGG | - | Chr1:96120249-96120268 | MsG0180005784.01.T01:intron | 40.0% |
| !! | TGCTGAGTATAGGCTTTGTT+TGG | - | Chr1:96121129-96121148 | MsG0180005784.01.T01:intron | 40.0% |
| !!! | GCTGTGTTTTTGAGTTTAGG+AGG | + | Chr1:96120883-96120902 | None:intergenic | 40.0% |
| AGAAGCGAGAACAAGAAAGG+GGG | + | Chr1:96119936-96119955 | None:intergenic | 45.0% | |
| AGAGAAAGAGAAGGAAGGAG+AGG | + | Chr1:96119882-96119901 | None:intergenic | 45.0% | |
| AGAGGAGAGAAAGAGAAGGA+AGG | + | Chr1:96119887-96119906 | None:intergenic | 45.0% | |
| ATAGCATCAGCTGTAGTTGG+CGG | + | Chr1:96120225-96120244 | None:intergenic | 45.0% | |
| ATGTCGTTGTTGAGGCTTTG+TGG | - | Chr1:96120295-96120314 | MsG0180005784.01.T01:intron | 45.0% | |
| CAAAGTTGAAAAGCCTCACG+AGG | - | Chr1:96121282-96121301 | MsG0180005784.01.T01:CDS | 45.0% | |
| CAACCCCAACATACCAGAAA+TGG | + | Chr1:96120256-96120275 | None:intergenic | 45.0% | |
| CAGAAGCGAGAACAAGAAAG+GGG | + | Chr1:96119937-96119956 | None:intergenic | 45.0% | |
| CATTGCGCAATGCTGAGTAT+AGG | - | Chr1:96121119-96121138 | MsG0180005784.01.T01:intron | 45.0% | |
| CTTCGGCAGATATTTGACCA+AGG | + | Chr1:96121324-96121343 | None:intergenic | 45.0% | |
| CTTCGTCTTCCCTTCTCTTT+CGG | + | Chr1:96119720-96119739 | None:intergenic | 45.0% | |
| GACAGTGAAACCGAAAGAGA+AGG | - | Chr1:96119707-96119726 | MsG0180005784.01.T01:CDS | 45.0% | |
| GAGAAAGAGAAGGAAGGAGA+GGG | + | Chr1:96119881-96119900 | None:intergenic | 45.0% | |
| GCAGAAGCGAGAACAAGAAA+GGG | + | Chr1:96119938-96119957 | None:intergenic | 45.0% | |
| GCTTCTCATATTCCCCCATT+TGG | + | Chr1:96121076-96121095 | None:intergenic | 45.0% | |
| TACCTTGGAGGTAAAGTCGT+TGG | + | Chr1:96119972-96119991 | None:intergenic | 45.0% | |
| TGCAGAAGCGAGAACAAGAA+AGG | + | Chr1:96119939-96119958 | None:intergenic | 45.0% | |
| ! | CTCGTGAGGCTTTTCAACTT+TGG | + | Chr1:96121284-96121303 | None:intergenic | 45.0% |
| ! | TGTATTGGAGGAGGGTTTTG+AGG | + | Chr1:96120752-96120771 | None:intergenic | 45.0% |
| ! | TGTCGTTGTTGAGGCTTTGT+GGG | - | Chr1:96120296-96120315 | MsG0180005784.01.T01:intron | 45.0% |
| !! | GGACCATTTCTGGTATGTTG+GGG | - | Chr1:96120250-96120269 | MsG0180005784.01.T01:intron | 45.0% |
| !! | GTATTGGAGGAGGGTTTTGA+GGG | + | Chr1:96120751-96120770 | None:intergenic | 45.0% |
| !!! | GAGAAAGGTGTTGGGTTTTG+TGG | - | Chr1:96119771-96119790 | MsG0180005784.01.T01:CDS | 45.0% |
| AAGAGAAGGAAGGAGAGGGA+CGG | + | Chr1:96119877-96119896 | None:intergenic | 50.0% | |
| AGGTAAAGTCGTTGGAGGAG+TGG | + | Chr1:96119964-96119983 | None:intergenic | 50.0% | |
| AGTTTAGGAGGGGACGACTT+TGG | + | Chr1:96120871-96120890 | None:intergenic | 50.0% | |
| CAGAGATCTTGAGAAGCCGA+AGG | - | Chr1:96121174-96121193 | MsG0180005784.01.T01:CDS | 50.0% | |
| CTCCAACGACTTTACCTCCA+AGG | - | Chr1:96119967-96119986 | MsG0180005784.01.T01:CDS | 50.0% | |
| CTTGGAGGTAAAGTCGTTGG+AGG | + | Chr1:96119969-96119988 | None:intergenic | 50.0% | |
| GACGTTGACACTCAAGACCT+TGG | - | Chr1:96121304-96121323 | MsG0180005784.01.T01:exon | 50.0% | |
| GCGAAGAGGAGAGAAAGAGA+AGG | + | Chr1:96119891-96119910 | None:intergenic | 50.0% | |
| GGTAAAGTCGTTGGAGGAGT+GGG | + | Chr1:96119963-96119982 | None:intergenic | 50.0% | |
| GTTTAGGAGGGGACGACTTT+GGG | + | Chr1:96120870-96120889 | None:intergenic | 50.0% | |
| ! | AGGGGACGACTTTGGGAAAA+AGG | + | Chr1:96120863-96120882 | None:intergenic | 50.0% |
| ATGGAGAGGAAGAGAGGAGG+AGG | + | Chr1:96119849-96119868 | None:intergenic | 55.0% | |
| GAAGCGATGGAGAGGAAGAG+AGG | + | Chr1:96119855-96119874 | None:intergenic | 55.0% | |
| TGAGTGTCAACGTCCTCGTG+AGG | + | Chr1:96121298-96121317 | None:intergenic | 55.0% | |
| AAGGAGAGGGACGGAAGCGA+TGG | + | Chr1:96119868-96119887 | None:intergenic | 60.0% | |
| AGAGGAGGAGGAGGAGAGGA+TGG | + | Chr1:96119837-96119856 | None:intergenic | 60.0% | |
| AGGAGGAGAGGATGGAGGGA+AGG | + | Chr1:96119829-96119848 | None:intergenic | 60.0% | |
| GAAGAGAGGAGGAGGAGGAG+AGG | + | Chr1:96119841-96119860 | None:intergenic | 60.0% | |
| GAGAGGAAGAGAGGAGGAGG+AGG | + | Chr1:96119846-96119865 | None:intergenic | 60.0% | |
| GAGGAGGAGGAGAGGATGGA+GGG | + | Chr1:96119833-96119852 | None:intergenic | 60.0% | |
| GCGATGGAGAGGAAGAGAGG+AGG | + | Chr1:96119852-96119871 | None:intergenic | 60.0% | |
| GGAGGAGAGGATGGAGGGAA+GGG | + | Chr1:96119828-96119847 | None:intergenic | 60.0% | |
| GAGGGACGGAAGCGATGGAG+AGG | + | Chr1:96119863-96119882 | None:intergenic | 65.0% | |
| GGAGGAGGAGGAGAGGATGG+AGG | + | Chr1:96119834-96119853 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr1 | gene | 96119699 | 96121432 | 96119699 | ID=MsG0180005784.01;Name=MsG0180005784.01 |
| Chr1 | mRNA | 96119699 | 96121432 | 96119699 | ID=MsG0180005784.01.T01;Parent=MsG0180005784.01;Name=MsG0180005784.01.T01;_AED=0.42;_eAED=0.42;_QI=119|1|0.66|1|0.5|0.66|3|0|231 |
| Chr1 | exon | 96119699 | 96120017 | 96119699 | ID=MsG0180005784.01.T01:exon:10577;Parent=MsG0180005784.01.T01 |
| Chr1 | exon | 96120773 | 96120978 | 96120773 | ID=MsG0180005784.01.T01:exon:10576;Parent=MsG0180005784.01.T01 |
| Chr1 | exon | 96121143 | 96121432 | 96121143 | ID=MsG0180005784.01.T01:exon:10575;Parent=MsG0180005784.01.T01 |
| Chr1 | five_prime_UTR | 96121314 | 96121432 | 96121314 | ID=MsG0180005784.01.T01:five_prime_utr;Parent=MsG0180005784.01.T01 |
| Chr1 | CDS | 96121143 | 96121313 | 96121143 | ID=MsG0180005784.01.T01:cds;Parent=MsG0180005784.01.T01 |
| Chr1 | CDS | 96120773 | 96120978 | 96120773 | ID=MsG0180005784.01.T01:cds;Parent=MsG0180005784.01.T01 |
| Chr1 | CDS | 96119699 | 96120017 | 96119699 | ID=MsG0180005784.01.T01:cds;Parent=MsG0180005784.01.T01 |
| Gene Sequence |
| Protein sequence |
