AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880045413.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880045413.01.T01 MTR_8g070830 99.346 153 1 0 28 180 306 458 1.16e-99 295
MsG0880045413.01.T01 MTR_8g070830 99.346 153 1 0 28 180 360 512 6.65e-99 295
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880045413.01.T01 AT1G32080 89.542 153 16 0 28 180 360 512 2.23e-88 268

Find 54 sgRNAs with CRISPR-Local

Find 196 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAAGCTTGCTTGCAGTTAT+TGG 0.161197 8:-58893863 MsG0880045413.01.T01:CDS
TATGCTTTGAATGGCATATT+TGG 0.208611 8:-58893917 MsG0880045413.01.T01:CDS
TATAACTTCCATTGTTTATA+TGG 0.231809 8:-58893781 MsG0880045413.01.T01:three_prime_UTR
ATCCTATACAATTTACAAAA+TGG 0.278024 8:+58893709 None:intergenic
GAGGAATAGCAACTGCTTCT+AGG 0.305116 8:-58894551 MsG0880045413.01.T01:intron
AAGACCTTCTTCACATTTGA+TGG 0.329032 8:+58896387 None:intergenic
TTGTAGTAACTGGTCTGGTT+GGG 0.335058 8:-58894629 MsG0880045413.01.T01:CDS
GATAGTGCACAGCAAATTAT+AGG 0.348590 8:+58896360 None:intergenic
CAATGCCACTGTTATACATC+TGG 0.356511 8:+58894834 None:intergenic
AGTATTGTGTCTCTGTTTGA+TGG 0.359340 8:-58894805 MsG0880045413.01.T01:intron
AGCAAGCTTTGTCTCACAAT+TGG 0.379154 8:+58893875 None:intergenic
TTGTACAGTGCTCATGGGCT+TGG 0.398929 8:-58893995 MsG0880045413.01.T01:intron
GGGTAGAATGGACACGGTTA+AGG 0.400734 8:+58894855 None:intergenic
GTTGTAGTAACTGGTCTGGT+TGG 0.403509 8:-58894630 MsG0880045413.01.T01:CDS
GCAGCAGTGGTTGTAGTAAC+TGG 0.413600 8:-58894639 MsG0880045413.01.T01:CDS
CTGTACTCAACCGCCCTTGT+TGG 0.439304 8:-58894901 MsG0880045413.01.T01:CDS
TGGGAGAGCCTCGGGTTCCT+TGG 0.451282 8:+58893955 None:intergenic
TGTTATACATCTGGGTAGAA+TGG 0.468571 8:+58894843 None:intergenic
TCTATATTCAGCTTGTGAAA+AGG 0.487582 8:-58894972 MsG0880045413.01.T01:intron
GTTGCTATTCCTCGAGCAAT+CGG 0.491772 8:+58894561 None:intergenic
TGCTGCTGTGAGAGATGGAT+TGG 0.493491 8:+58894656 None:intergenic
GCACAGAATGGGAGAGCCTC+GGG 0.496817 8:+58893947 None:intergenic
AAATGGCGCTACTTACTGCT+TGG 0.514027 8:+58893726 None:intergenic
AGTGGTTGTAGTAACTGGTC+TGG 0.515558 8:-58894634 MsG0880045413.01.T01:CDS
TGTAGTAACTGGTCTGGTTG+GGG 0.520423 8:-58894628 MsG0880045413.01.T01:CDS
GGAATGAAAATAATAGTAGC+AGG 0.525121 8:+58893814 None:intergenic
CAGATGTATAACAGTGGCAT+TGG 0.527877 8:-58894833 MsG0880045413.01.T01:CDS
GCCATTGCGTATGCTTTGAA+TGG 0.536280 8:-58893926 MsG0880045413.01.T01:CDS
CATACGCAATGGCACAGAAT+GGG 0.536371 8:+58893936 None:intergenic
ACCACTGCTGCTGTGAGAGA+TGG 0.540976 8:+58894651 None:intergenic
GGCACAGAATGGGAGAGCCT+CGG 0.541560 8:+58893946 None:intergenic
GCATACGCAATGGCACAGAA+TGG 0.541739 8:+58893935 None:intergenic
TGGAAGTTATAGCATACAAA+GGG 0.552649 8:+58893793 None:intergenic
GTTGCCATCAAATGTGAAGA+AGG 0.560001 8:-58896391 MsG0880045413.01.T01:CDS
GTCAATTGATGTGAGATATG+TGG 0.581203 8:-58893642 MsG0880045413.01.T01:three_prime_UTR
AATGCCACTGTTATACATCT+GGG 0.582864 8:+58894835 None:intergenic
ATGGAAGTTATAGCATACAA+AGG 0.586430 8:+58893792 None:intergenic
CCATTGTTTATATGGTAGAG+TGG 0.588726 8:-58893773 MsG0880045413.01.T01:three_prime_UTR
TTTAGTGATCCGATTGCTCG+AGG 0.598429 8:-58894570 MsG0880045413.01.T01:CDS
GTGCACAGCAAATTATAGGA+TGG 0.607605 8:+58896364 None:intergenic
CCACTCTACCATATAAACAA+TGG 0.608431 8:+58893773 None:intergenic
AACAGCAGCATTGTCTGCCA+AGG 0.617766 8:-58893972 MsG0880045413.01.T01:CDS
TCCATCTCTCACAGCAGCAG+TGG 0.618490 8:-58894652 MsG0880045413.01.T01:CDS
AGAATGGACACGGTTAAGGA+TGG 0.628632 8:+58894859 None:intergenic
ATTGAACAAGACGTCCAACA+AGG 0.633045 8:+58894887 None:intergenic
GCCATTCAAAGCATACGCAA+TGG 0.637137 8:+58893925 None:intergenic
AAACAGAGACACAATACTGA+GGG 0.638521 8:+58894810 None:intergenic
AGCAAATGCTGTCAAAACTG+CGG 0.664146 8:+58896338 None:intergenic
AACAAGACGTCCAACAAGGG+CGG 0.666041 8:+58894891 None:intergenic
TTGAACAAGACGTCCAACAA+GGG 0.670786 8:+58894888 None:intergenic
ATTGTCTGCCAAGGAACCCG+AGG 0.674254 8:-58893963 MsG0880045413.01.T01:CDS
ACATCTGGGTAGAATGGACA+CGG 0.704145 8:+58894849 None:intergenic
TCTACCCAGATGTATAACAG+TGG 0.727669 8:-58894839 MsG0880045413.01.T01:CDS
CAAACAGAGACACAATACTG+AGG 0.731160 8:+58894809 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAAACTATTTTATAACAAA+AGG - Chr8:58894607-58894626 MsG0880045413.01.T01:CDS 10.0%
!! AAACGAAAAATATACATTAT+CGG + Chr8:58893954-58893973 None:intergenic 15.0%
!! ATAAACACTTATTATTTAAG+AGG - Chr8:58894578-58894597 MsG0880045413.01.T01:CDS 15.0%
!!! ACATATTACAATTTTAAAGA+TGG - Chr8:58896440-58896459 MsG0880045413.01.T01:intron 15.0%
!!! ACATTTTTGAATTTATTTAC+TGG + Chr8:58894813-58894832 None:intergenic 15.0%
!!! GTAATTCAATTTTTTATTTG+AGG - Chr8:58893540-58893559 MsG0880045413.01.T01:three_prime_UTR 15.0%
!! AAAACAACTTATAGCTTATA+TGG + Chr8:58894685-58894704 None:intergenic 20.0%
!! AACGAAAAATATACATTATC+GGG + Chr8:58893953-58893972 None:intergenic 20.0%
!! AGTATAAGATTTATTTCATG+AGG + Chr8:58894343-58894362 None:intergenic 20.0%
!! ATCCTATACAATTTACAAAA+TGG + Chr8:58896279-58896298 None:intergenic 20.0%
!! CTTTGACTATAAAATTTACT+AGG + Chr8:58894135-58894154 None:intergenic 20.0%
!! GAATATAGAAAACAAATCAA+TGG + Chr8:58895002-58895021 None:intergenic 20.0%
!! TATAACTTCCATTGTTTATA+TGG - Chr8:58896204-58896223 MsG0880045413.01.T01:intron 20.0%
!! TATTAATTTCTCATTAGTGT+CGG + Chr8:58894046-58894065 None:intergenic 20.0%
!!! AAAATAGAATTTTTCAGTGA+TGG + Chr8:58895296-58895315 None:intergenic 20.0%
!!! ACAGTTTGACTTTTTTTTTT+TGG + Chr8:58894660-58894679 None:intergenic 20.0%
!!! AGAAGAATTTTTATTGATTC+TGG - Chr8:58895898-58895917 MsG0880045413.01.T01:intron 20.0%
!!! TGGAAAACAAGTTTTTTATT+TGG + Chr8:58894925-58894944 None:intergenic 20.0%
!!! TTACTTATTCTTTTTGTTCT+TGG - Chr8:58894428-58894447 MsG0880045413.01.T01:intron 20.0%
!!! TTTTTTATTTGGTTAGTGAT+TGG + Chr8:58894914-58894933 None:intergenic 20.0%
! AATCAATGGTTAATGAGTAA+CGG + Chr8:58894988-58895007 None:intergenic 25.0%
! AATTACTCTATCATGAAAGT+TGG - Chr8:58893732-58893751 MsG0880045413.01.T01:three_prime_UTR 25.0%
! ACGTATAGACCAAATTAAAA+CGG + Chr8:58895586-58895605 None:intergenic 25.0%
! AGCATCCATTTAATGATTAT+TGG + Chr8:58895238-58895257 None:intergenic 25.0%
! ATAAAATTTACTAGGCATAG+TGG + Chr8:58894127-58894146 None:intergenic 25.0%
! GCATCCATTTAATGATTATT+GGG + Chr8:58895237-58895256 None:intergenic 25.0%
! TCATCCCAATAATCATTAAA+TGG - Chr8:58895230-58895249 MsG0880045413.01.T01:intron 25.0%
! TTTGGATAAACAACTCAATT+AGG - Chr8:58894540-58894559 MsG0880045413.01.T01:intron 25.0%
! TTTGTTCTTGGTAAATCATT+GGG - Chr8:58894440-58894459 MsG0880045413.01.T01:intron 25.0%
!! AAATTCTATTTTCTGTGTAC+AGG - Chr8:58895304-58895323 MsG0880045413.01.T01:intron 25.0%
!! AGAATCTGTTTAAAATCCAA+TGG + Chr8:58895773-58895792 None:intergenic 25.0%
!! GAATCTGTTTAAAATCCAAT+GGG + Chr8:58895772-58895791 None:intergenic 25.0%
!! GTAGTCTTAAAATTTAGGTT+GGG - Chr8:58895620-58895639 MsG0880045413.01.T01:intron 25.0%
!! TTTTATAGTCAAAGCCATTT+CGG - Chr8:58894141-58894160 MsG0880045413.01.T01:intron 25.0%
!! TTTTGTTCTTGGTAAATCAT+TGG - Chr8:58894439-58894458 MsG0880045413.01.T01:intron 25.0%
!!! AGAGTTTGATTTAAGTTGAA+GGG - Chr8:58894469-58894488 MsG0880045413.01.T01:intron 25.0%
!!! GACATTTTAATGGGATTTTT+GGG - Chr8:58894252-58894271 MsG0880045413.01.T01:intron 25.0%
!!! TAGAGTTTGATTTAAGTTGA+AGG - Chr8:58894468-58894487 MsG0880045413.01.T01:intron 25.0%
!!! TGACATTTTAATGGGATTTT+TGG - Chr8:58894251-58894270 MsG0880045413.01.T01:intron 25.0%
AAAGATATATCATGCCGAAA+TGG + Chr8:58894158-58894177 None:intergenic 30.0%
AAATCCCATTAAAATGTCAC+CGG + Chr8:58894250-58894269 None:intergenic 30.0%
AAGAAAGGTAAACCATCTAT+AGG - Chr8:58894314-58894333 MsG0880045413.01.T01:intron 30.0%
AAGAGAATTAAGTCTGTACA+AGG + Chr8:58894890-58894909 None:intergenic 30.0%
AAGCTATCATGTAGAACTTA+CGG - Chr8:58894708-58894727 MsG0880045413.01.T01:intron 30.0%
AATTAGTCCACGTACAATAT+AGG - Chr8:58894002-58894021 MsG0880045413.01.T01:intron 30.0%
ACTCGTAACATAACTAGAAA+TGG - Chr8:58895867-58895886 MsG0880045413.01.T01:intron 30.0%
ACTTTGGTTGCTAATTAACT+AGG - Chr8:58893760-58893779 MsG0880045413.01.T01:three_prime_UTR 30.0%
AGACTGTTATTGAAAGCTTA+TGG + Chr8:58894776-58894795 None:intergenic 30.0%
AGTTAATTAGCAACCAAAGT+TGG + Chr8:58893760-58893779 None:intergenic 30.0%
AGTTGCATATTTCAAGACAT+TGG + Chr8:58893913-58893932 None:intergenic 30.0%
ATGGAAGTTATAGCATACAA+AGG + Chr8:58896196-58896215 None:intergenic 30.0%
ATTAGTCCACGTACAATATA+GGG - Chr8:58894003-58894022 MsG0880045413.01.T01:intron 30.0%
ATTGACATTTCTCATCTAAC+AGG + Chr8:58895674-58895693 None:intergenic 30.0%
CGTATAGACCAAATTAAAAC+GGG + Chr8:58895585-58895604 None:intergenic 30.0%
GAAATGAGTTTATAAGTGGT+AGG + Chr8:58895822-58895841 None:intergenic 30.0%
GGAATGAAAATAATAGTAGC+AGG + Chr8:58896174-58896193 None:intergenic 30.0%
GGTATGAGAAAGAAAAATGT+TGG + Chr8:58894945-58894964 None:intergenic 30.0%
GTATAGACCAAATTAAAACG+GGG + Chr8:58895584-58895603 None:intergenic 30.0%
GTTGCATATTTCAAGACATT+GGG + Chr8:58893912-58893931 None:intergenic 30.0%
GTTTGAATTCATATCCTGTT+TGG + Chr8:58894840-58894859 None:intergenic 30.0%
TCAAAAATGTCAATCCAAAC+AGG - Chr8:58894823-58894842 MsG0880045413.01.T01:CDS 30.0%
TCTAGTTGTTTATCCAAACA+GGG + Chr8:58894495-58894514 None:intergenic 30.0%
TCTATATTCAGCTTGTGAAA+AGG - Chr8:58895013-58895032 MsG0880045413.01.T01:intron 30.0%
TGGAAGTTATAGCATACAAA+GGG + Chr8:58896195-58896214 None:intergenic 30.0%
TTATGTTACGAGTTTCACAT+TGG + Chr8:58895860-58895879 None:intergenic 30.0%
TTGCATATTTCAAGACATTG+GGG + Chr8:58893911-58893930 None:intergenic 30.0%
TTGGTAAGCGAACAAAATAT+TGG + Chr8:58895474-58895493 None:intergenic 30.0%
TTTAAACAGATTCTGATACC+AGG - Chr8:58895779-58895798 MsG0880045413.01.T01:intron 30.0%
! AAAGAAAAACTGGTTTCCTT+AGG + Chr8:58893886-58893905 None:intergenic 30.0%
! AAATTTTGTACAGTGCTCAT+GGG - Chr8:58895985-58896004 MsG0880045413.01.T01:intron 30.0%
! ATGCAAAGATAAAGGGTTTT+TGG + Chr8:58895493-58895512 None:intergenic 30.0%
! ATTGAGTTGTTTATCCAAAC+AGG + Chr8:58894539-58894558 None:intergenic 30.0%
! GGTAGTCTTAAAATTTAGGT+TGG - Chr8:58895619-58895638 MsG0880045413.01.T01:intron 30.0%
! GTCAGGTAGTCTTAAAATTT+AGG - Chr8:58895615-58895634 MsG0880045413.01.T01:intron 30.0%
! TAAATTTTGTACAGTGCTCA+TGG - Chr8:58895984-58896003 MsG0880045413.01.T01:intron 30.0%
! TATGCTTTGAATGGCATATT+TGG - Chr8:58896068-58896087 MsG0880045413.01.T01:intron 30.0%
! TTGAGTTGTTTATCCAAACA+GGG + Chr8:58894538-58894557 None:intergenic 30.0%
!! CGCCATTTTGTAAATTGTAT+AGG - Chr8:58896274-58896293 MsG0880045413.01.T01:intron 30.0%
!! TCGGGTATTTTTCAAAGTTA+GGG - Chr8:58893671-58893690 MsG0880045413.01.T01:three_prime_UTR 30.0%
!! TCTTAAAATTTAGGTTGGGT+TGG - Chr8:58895624-58895643 MsG0880045413.01.T01:intron 30.0%
!! TTCGGGTATTTTTCAAAGTT+AGG - Chr8:58893670-58893689 MsG0880045413.01.T01:three_prime_UTR 30.0%
!!! TGTTGCTGTTATTTTCTTTC+AGG - Chr8:58893572-58893591 MsG0880045413.01.T01:three_prime_UTR 30.0%
AAACAGAGACACAATACTGA+GGG + Chr8:58895178-58895197 None:intergenic 35.0%
AAGACCTTCTTCACATTTGA+TGG + Chr8:58893601-58893620 None:intergenic 35.0%
AATGCCACTGTTATACATCT+GGG + Chr8:58895153-58895172 None:intergenic 35.0%
ACATTGGATGAAATATGACC+TGG + Chr8:58895844-58895863 None:intergenic 35.0%
ACCAAATTAAAACGGGGATA+TGG + Chr8:58895578-58895597 None:intergenic 35.0%
ACTCTTCTCTCAACATTCAT+AGG - Chr8:58894189-58894208 MsG0880045413.01.T01:intron 35.0%
AGTATTGTGTCTCTGTTTGA+TGG - Chr8:58895180-58895199 MsG0880045413.01.T01:intron 35.0%
AGTGTGTGATGCAAAGATAA+AGG + Chr8:58895501-58895520 None:intergenic 35.0%
ATGCTTGACTGTTTGTCATT+CGG + Chr8:58893842-58893861 None:intergenic 35.0%
ATTTGGATTATACACTCTGG+TGG - Chr8:58895529-58895548 MsG0880045413.01.T01:intron 35.0%
CCAAATTAAAACGGGGATAT+GGG + Chr8:58895577-58895596 None:intergenic 35.0%
CCACTCTACCATATAAACAA+TGG + Chr8:58896215-58896234 None:intergenic 35.0%
CCACTTATAAACTCATTTCC+AGG - Chr8:58895823-58895842 MsG0880045413.01.T01:intron 35.0%
CCATTGTTTATATGGTAGAG+TGG - Chr8:58896212-58896231 MsG0880045413.01.T01:intron 35.0%
CCTGGAAATGAGTTTATAAG+TGG + Chr8:58895826-58895845 None:intergenic 35.0%
CTCATACCATAGTTAAACAG+CGG - Chr8:58894957-58894976 MsG0880045413.01.T01:CDS 35.0%
CTCTAGTTGTTTATCCAAAC+AGG + Chr8:58894496-58894515 None:intergenic 35.0%
GATAGTGCACAGCAAATTAT+AGG + Chr8:58893628-58893647 None:intergenic 35.0%
GTCAAGCATTTCAAATCTTC+TGG - Chr8:58893853-58893872 MsG0880045413.01.T01:exon 35.0%
GTCAATTGATGTGAGATATG+TGG - Chr8:58896343-58896362 MsG0880045413.01.T01:CDS 35.0%
GTGTGTGATGCAAAGATAAA+GGG + Chr8:58895500-58895519 None:intergenic 35.0%
TACCTTTCTTTGCTTGAACA+TGG + Chr8:58894304-58894323 None:intergenic 35.0%
TCACACACTGAAATTGCATT+TGG - Chr8:58895512-58895531 MsG0880045413.01.T01:intron 35.0%
TCTTCAAACATACCTAGAAC+AGG + Chr8:58893703-58893722 None:intergenic 35.0%
TGCATTTGGATTATACACTC+TGG - Chr8:58895526-58895545 MsG0880045413.01.T01:intron 35.0%
TGTTATACATCTGGGTAGAA+TGG + Chr8:58895145-58895164 None:intergenic 35.0%
TTCATGAGGAAACCTATAGA+TGG + Chr8:58894329-58894348 None:intergenic 35.0%
TTTAGTCCCTATATTGTACG+TGG + Chr8:58894012-58894031 None:intergenic 35.0%
! TTTTGACAGCATTTGCTTTC+GGG - Chr8:58893653-58893672 MsG0880045413.01.T01:three_prime_UTR 35.0%
!! GTTTTGACAGCATTTGCTTT+CGG - Chr8:58893652-58893671 MsG0880045413.01.T01:three_prime_UTR 35.0%
!! TTAGCTTTGCTTTCACATCA+CGG - Chr8:58894087-58894106 MsG0880045413.01.T01:intron 35.0%
!!! CACATGTCATTTTACGTGTT+AGG - Chr8:58896371-58896390 MsG0880045413.01.T01:CDS 35.0%
AGCAAATGCTGTCAAAACTG+CGG + Chr8:58893650-58893669 None:intergenic 40.0%
ATCTTCTGGCAAGTTACCTA+AGG - Chr8:58893867-58893886 MsG0880045413.01.T01:CDS 40.0%
ATTGAACAAGACGTCCAACA+AGG + Chr8:58895101-58895120 None:intergenic 40.0%
CAAACAGAGACACAATACTG+AGG + Chr8:58895179-58895198 None:intergenic 40.0%
CAATGCCACTGTTATACATC+TGG + Chr8:58895154-58895173 None:intergenic 40.0%
CAGATGTATAACAGTGGCAT+TGG - Chr8:58895152-58895171 MsG0880045413.01.T01:intron 40.0%
CATTGGGGACAAAGAAAAAC+TGG + Chr8:58893896-58893915 None:intergenic 40.0%
CTAACTCAACCCTACAAAAC+TGG - Chr8:58895648-58895667 MsG0880045413.01.T01:intron 40.0%
CTCCATGTTCAAGCAAAGAA+AGG - Chr8:58894299-58894318 MsG0880045413.01.T01:intron 40.0%
CTTGAACATGGAGAAGGAAA+AGG + Chr8:58894292-58894311 None:intergenic 40.0%
GATTCTGATACCAGGTTGTA+AGG - Chr8:58895787-58895806 MsG0880045413.01.T01:intron 40.0%
GTGCACAGCAAATTATAGGA+TGG + Chr8:58893624-58893643 None:intergenic 40.0%
GTTGCCATCAAATGTGAAGA+AGG - Chr8:58893594-58893613 MsG0880045413.01.T01:three_prime_UTR 40.0%
GTTTAGCCGCTGTTTAACTA+TGG + Chr8:58894966-58894985 None:intergenic 40.0%
TCTACCCAGATGTATAACAG+TGG - Chr8:58895146-58895165 MsG0880045413.01.T01:intron 40.0%
TCTTTGCTTGAACATGGAGA+AGG + Chr8:58894298-58894317 None:intergenic 40.0%
TTGAACAAGACGTCCAACAA+GGG + Chr8:58895100-58895119 None:intergenic 40.0%
! AGCAAGCTTTGTCTCACAAT+TGG + Chr8:58896113-58896132 None:intergenic 40.0%
! CAAAGCTTGCTTGCAGTTAT+TGG - Chr8:58896122-58896141 MsG0880045413.01.T01:intron 40.0%
! CTATACGTAGTTTGTCTGTC+AGG - Chr8:58895598-58895617 MsG0880045413.01.T01:intron 40.0%
! TTGATGGTAAGTATCATGCC+TGG - Chr8:58895196-58895215 MsG0880045413.01.T01:intron 40.0%
! TTGTAGTAACTGGTCTGGTT+GGG - Chr8:58895356-58895375 MsG0880045413.01.T01:intron 40.0%
!! ATCTAACAGGCCAGTTTTGT+AGG + Chr8:58895661-58895680 None:intergenic 40.0%
!! ATGAAAGTTGGTGCCAACTT+TGG - Chr8:58893744-58893763 MsG0880045413.01.T01:three_prime_UTR 40.0%
!! ATTCGGTGTTTGCAATCAGA+AGG + Chr8:58893825-58893844 None:intergenic 40.0%
!! TCTAACAGGCCAGTTTTGTA+GGG + Chr8:58895660-58895679 None:intergenic 40.0%
!!! CCCATATCCCCGTTTTAATT+TGG - Chr8:58895574-58895593 MsG0880045413.01.T01:intron 40.0%
AAATGGCGCTACTTACTGCT+TGG + Chr8:58896262-58896281 None:intergenic 45.0%
ACATCTGGGTAGAATGGACA+CGG + Chr8:58895139-58895158 None:intergenic 45.0%
AGAATGGACACGGTTAAGGA+TGG + Chr8:58895129-58895148 None:intergenic 45.0%
AGTGGTTGTAGTAACTGGTC+TGG - Chr8:58895351-58895370 MsG0880045413.01.T01:intron 45.0%
CATACGCAATGGCACAGAAT+GGG + Chr8:58896052-58896071 None:intergenic 45.0%
GAGGAATAGCAACTGCTTCT+AGG - Chr8:58895434-58895453 MsG0880045413.01.T01:intron 45.0%
GATACCAGGTTGTAAGGTGA+GGG - Chr8:58895793-58895812 MsG0880045413.01.T01:intron 45.0%
GATTATACACTCTGGTGGAG+AGG - Chr8:58895534-58895553 MsG0880045413.01.T01:intron 45.0%
GCCATTCAAAGCATACGCAA+TGG + Chr8:58896063-58896082 None:intergenic 45.0%
TAGCACATTCTCTCACGTCT+AGG - Chr8:58895702-58895721 MsG0880045413.01.T01:intron 45.0%
TGATACCAGGTTGTAAGGTG+AGG - Chr8:58895792-58895811 MsG0880045413.01.T01:intron 45.0%
TTAGGGCTTGATCCTGTTCT+AGG - Chr8:58893688-58893707 MsG0880045413.01.T01:three_prime_UTR 45.0%
TTTAGTGATCCGATTGCTCG+AGG - Chr8:58895415-58895434 MsG0880045413.01.T01:intron 45.0%
! GCCATTGCGTATGCTTTGAA+TGG - Chr8:58896059-58896078 MsG0880045413.01.T01:intron 45.0%
! GTTGCTATTCCTCGAGCAAT+CGG + Chr8:58895427-58895446 None:intergenic 45.0%
! GTTGTAGTAACTGGTCTGGT+TGG - Chr8:58895355-58895374 MsG0880045413.01.T01:intron 45.0%
! TGGAGCCGGTGACATTTTAA+TGG - Chr8:58894242-58894261 MsG0880045413.01.T01:intron 45.0%
! TGTAGTAACTGGTCTGGTTG+GGG - Chr8:58895357-58895376 MsG0880045413.01.T01:intron 45.0%
!! ATTAAAATGTCACCGGCTCC+AGG + Chr8:58894243-58894262 None:intergenic 45.0%
!! GGAGCCGGTGACATTTTAAT+GGG - Chr8:58894243-58894262 MsG0880045413.01.T01:intron 45.0%
!! TTAAGTTGAAGGGCCCTGTT+TGG - Chr8:58894479-58894498 MsG0880045413.01.T01:intron 45.0%
AACAAGACGTCCAACAAGGG+CGG + Chr8:58895097-58895116 None:intergenic 50.0%
AACAGCAGCATTGTCTGCCA+AGG - Chr8:58896013-58896032 MsG0880045413.01.T01:intron 50.0%
AGGCATAGTGGTCGAGAAAG+AGG + Chr8:58894115-58894134 None:intergenic 50.0%
GCAGCAGTGGTTGTAGTAAC+TGG - Chr8:58895346-58895365 MsG0880045413.01.T01:intron 50.0%
GCATACGCAATGGCACAGAA+TGG + Chr8:58896053-58896072 None:intergenic 50.0%
GGGTAGAATGGACACGGTTA+AGG + Chr8:58895133-58895152 None:intergenic 50.0%
TCACGTCTAGGCTAGACATC+TGG - Chr8:58895714-58895733 MsG0880045413.01.T01:intron 50.0%
TGACTTGAGCAGCCCCAATA+GGG - Chr8:58895741-58895760 MsG0880045413.01.T01:intron 50.0%
TGCTGCTGTGAGAGATGGAT+TGG + Chr8:58895332-58895351 None:intergenic 50.0%
TTGTACAGTGCTCATGGGCT+TGG - Chr8:58895990-58896009 MsG0880045413.01.T01:intron 50.0%
! GATTGGCGGATGTGTTGGTA+AGG + Chr8:58894221-58894240 None:intergenic 50.0%
ACCAACACATCCGCCAATCC+TGG - Chr8:58894222-58894241 MsG0880045413.01.T01:intron 55.0%
ACCACTGCTGCTGTGAGAGA+TGG + Chr8:58895337-58895356 None:intergenic 55.0%
ACTTGAGCAGCCCCAATAGG+GGG - Chr8:58895743-58895762 MsG0880045413.01.T01:intron 55.0%
ATTGTCTGCCAAGGAACCCG+AGG - Chr8:58896022-58896041 MsG0880045413.01.T01:intron 55.0%
CTGTACTCAACCGCCCTTGT+TGG - Chr8:58895084-58895103 MsG0880045413.01.T01:intron 55.0%
GACTTGAGCAGCCCCAATAG+GGG - Chr8:58895742-58895761 MsG0880045413.01.T01:intron 55.0%
GCATCCCTCACCTTACAACC+TGG + Chr8:58895800-58895819 None:intergenic 55.0%
GGGATGAACGTTTGCAGTCC+AGG + Chr8:58895217-58895236 None:intergenic 55.0%
GTGACTTGAGCAGCCCCAAT+AGG - Chr8:58895740-58895759 MsG0880045413.01.T01:intron 55.0%
TACACTCTGGTGGAGAGGTG+TGG - Chr8:58895539-58895558 MsG0880045413.01.T01:intron 55.0%
TCCATCTCTCACAGCAGCAG+TGG - Chr8:58895333-58895352 MsG0880045413.01.T01:intron 55.0%
! TCCAGGATTGGCGGATGTGT+TGG + Chr8:58894226-58894245 None:intergenic 55.0%
!! AATGTCACCGGCTCCAGGAT+TGG + Chr8:58894238-58894257 None:intergenic 55.0%
ACATCCGCCAATCCTGGAGC+CGG - Chr8:58894228-58894247 MsG0880045413.01.T01:intron 60.0%
CAATGGGCCACCCCCTATTG+GGG + Chr8:58895756-58895775 None:intergenic 60.0%
CCAATGGGCCACCCCCTATT+GGG + Chr8:58895757-58895776 None:intergenic 60.0%
GCACAGAATGGGAGAGCCTC+GGG + Chr8:58896041-58896060 None:intergenic 60.0%
GGCACAGAATGGGAGAGCCT+CGG + Chr8:58896042-58896061 None:intergenic 60.0%
TCCAATGGGCCACCCCCTAT+TGG + Chr8:58895758-58895777 None:intergenic 60.0%
CCCAATAGGGGGTGGCCCAT+TGG - Chr8:58895754-58895773 MsG0880045413.01.T01:intron 65.0%
TGAGCAGCCCCAATAGGGGG+TGG - Chr8:58895746-58895765 MsG0880045413.01.T01:intron 65.0%
TGGGAGAGCCTCGGGTTCCT+TGG + Chr8:58896033-58896052 None:intergenic 65.0%
!! GTCACCGGCTCCAGGATTGG+CGG + Chr8:58894235-58894254 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr8 gene 58893533 58896474 58893533 ID=MsG0880045413.01;Name=MsG0880045413.01
Chr8 mRNA 58893533 58896474 58893533 ID=MsG0880045413.01.T01;Parent=MsG0880045413.01;Name=MsG0880045413.01.T01;_AED=0.49;_eAED=0.54;_QI=0|0.5|0.6|1|1|0.8|5|326|180
Chr8 exon 58893533 58894009 58893533 ID=MsG0880045413.01.T01:exon:22711;Parent=MsG0880045413.01.T01
Chr8 exon 58894552 58894681 58894552 ID=MsG0880045413.01.T01:exon:22710;Parent=MsG0880045413.01.T01
Chr8 exon 58894806 58894983 58894806 ID=MsG0880045413.01.T01:exon:22709;Parent=MsG0880045413.01.T01
Chr8 exon 58896333 58896413 58896333 ID=MsG0880045413.01.T01:exon:22708;Parent=MsG0880045413.01.T01
Chr8 exon 58896472 58896474 58896472 ID=MsG0880045413.01.T01:exon:22707;Parent=MsG0880045413.01.T01
Chr8 CDS 58896472 58896474 58896472 ID=MsG0880045413.01.T01:cds;Parent=MsG0880045413.01.T01
Chr8 CDS 58896333 58896413 58896333 ID=MsG0880045413.01.T01:cds;Parent=MsG0880045413.01.T01
Chr8 CDS 58894806 58894983 58894806 ID=MsG0880045413.01.T01:cds;Parent=MsG0880045413.01.T01
Chr8 CDS 58894552 58894681 58894552 ID=MsG0880045413.01.T01:cds;Parent=MsG0880045413.01.T01
Chr8 CDS 58893859 58894009 58893859 ID=MsG0880045413.01.T01:cds;Parent=MsG0880045413.01.T01
Chr8 three_prime_UTR 58893533 58893858 58893533 ID=MsG0880045413.01.T01:three_prime_utr;Parent=MsG0880045413.01.T01
Gene Sequence

>MsG0880045413.01.T01

ATGGTTGCCATCAAATGTGAAGAAGGTCTTCCATCCTATAATTTGCTGTGCACTATCCGCAGTTTTGACAGCATTTGCTTTCGGCTTGTGAAAAGGCATGCAGCTGAGATTTTCACTTCTGTCATCATCTCAACAGTATTCTCACTGTACTCAACCGCCCTTGTTGGACGTCTTGTTCAATTAGAACCATCCTTAACCGTGTCCATTCTACCCAGATGTATAACAGTGGCATTGGCCCTCAGTATTGTGTCTCTGTTTGATGGTGCCAATCCATCTCTCACAGCAGCAGTGGTTGTAGTAACTGGTCTGGTTGGGGCGAATTTCGTGCAAGCAACTCTTGATAAACTCAGATTTAGTGATCCGATTGCTCGAGGAATAGCAACTGCTTCTAGTGCTCATGGGCTTGGAACAGCAGCATTGTCTGCCAAGGAACCCGAGGCTCTCCCATTCTGTGCCATTGCGTATGCTTTGAATGGCATATTTGGATCTATACTATGTTCAATTCCAATTGTGAGACAAAGCTTGCTTGCAGTTATTGGCTGA

Protein sequence

>MsG0880045413.01.T01

MVAIKCEEGLPSYNLLCTIRSFDSICFRLVKRHAAEIFTSVIISTVFSLYSTALVGRLVQLEPSLTVSILPRCITVALALSIVSLFDGANPSLTAAVVVVTGLVGANFVQATLDKLRFSDPIARGIATASSAHGLGTAALSAKEPEALPFCAIAYALNGIFGSILCSIPIVRQSLLAVIG*