AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380013473.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380013473.01.T02 MTR_3g053890 84.615 286 12 3 1 254 1 286 3.76e-171 478
MsG0380013473.01.T02 MTR_3g053890 84.615 286 12 3 1 254 1 286 6.84e-171 477
MsG0380013473.01.T02 MTR_5g090070 67.483 286 61 3 1 254 1 286 8.15e-137 391
MsG0380013473.01.T02 MTR_5g067370 58.846 260 72 5 1 246 1 239 1.02e-95 284
MsG0380013473.01.T02 MTR_5g094410 56.089 271 65 7 1 254 1 234 5.07e-86 260
MsG0380013473.01.T01 MTR_3g053890 84.615 286 12 3 1 254 1 286 3.76e-171 478
MsG0380013473.01.T01 MTR_3g053890 84.615 286 12 3 1 254 1 286 6.84e-171 477
MsG0380013473.01.T01 MTR_5g090070 67.483 286 61 3 1 254 1 286 8.15e-137 391
MsG0380013473.01.T01 MTR_5g067370 58.846 260 72 5 1 246 1 239 1.02e-95 284
MsG0380013473.01.T01 MTR_5g094410 56.089 271 65 7 1 254 1 234 5.07e-86 260
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380013473.01.T02 AT2G13360 74.825 286 40 4 1 254 1 286 5.46e-151 427
MsG0380013473.01.T02 AT2G13360 74.825 286 40 4 1 254 1 286 5.46e-151 427
MsG0380013473.01.T02 AT2G13360 74.825 286 40 4 1 254 1 286 5.46e-151 427
MsG0380013473.01.T01 AT2G13360 74.825 286 40 4 1 254 1 286 5.46e-151 427
MsG0380013473.01.T01 AT2G13360 74.825 286 40 4 1 254 1 286 5.46e-151 427
MsG0380013473.01.T01 AT2G13360 74.825 286 40 4 1 254 1 286 5.46e-151 427

Find 63 sgRNAs with CRISPR-Local

Find 199 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTACTTTATAAAGTATAAAA+AGG 0.180347 3:+38976369 None:intergenic
TCATGAAACAGTAAATATAT+TGG 0.277577 3:+38976256 None:intergenic
AACGATAGTCCTCGTTGTTT+CGG 0.283890 3:+38975648 None:intergenic
GAGACTACTAATACTAAAAT+TGG 0.286376 3:+38976330 None:intergenic
TAGGATATAGTCTGAACTTT+TGG 0.306223 3:-38976302 MsG0380013473.01.T01:intron
GGGAAGATGGATTATGTTAA+TGG 0.310016 3:-38975740 MsG0380013473.01.T01:exon
GCACGGACGCTCCTCGAATT+AGG 0.312825 3:-38976048 MsG0380013473.01.T01:intron
TTTGTCAGAGCTGGAATTGC+AGG 0.357939 3:+38975623 None:intergenic
AGAAACCACCTCTTTGTTCC+AGG 0.362779 3:-38975710 MsG0380013473.01.T01:CDS
AAAGTTATGCCAAGAGCATT+TGG 0.367129 3:-38976727 MsG0380013473.01.T01:five_prime_UTR
ACAAAGAGGTGGTTTCTTCC+TGG 0.368631 3:+38975716 None:intergenic
TACAACAAAGATGAGTGTTT+TGG 0.372696 3:+38976453 None:intergenic
TCAGGTAGTTTGGTGAAGTA+TGG 0.413909 3:+38976678 None:intergenic
TGAGTGTACCTCAGGTAGTT+TGG 0.417771 3:+38976668 None:intergenic
ACCTGGTCCGGTATGTTAAC+CGG 0.419216 3:+38975686 None:intergenic
TCCGGTATGTTAACCGGCCC+TGG 0.422439 3:+38975692 None:intergenic
CTGTCCAAGTAGTAGATAAG+AGG 0.439212 3:+38976810 None:intergenic
AAATTTCAAGCAAGGGAAGA+TGG 0.440926 3:-38975753 MsG0380013473.01.T01:exon
TCTCCCTCTTATCTACTACT+TGG 0.450916 3:-38976814 MsG0380013473.01.T01:five_prime_UTR
TATATAGGTGGTTCTTTGGT+GGG 0.457428 3:-38975812 MsG0380013473.01.T01:intron
ACATGATTCAGTGTAATCAT+AGG 0.458051 3:+38976003 None:intergenic
GTATTAGTAGTCTCTCATAT+AGG 0.462493 3:-38976321 MsG0380013473.01.T01:intron
CTGCCACTGCCAAATGCTCT+TGG 0.464279 3:+38976718 None:intergenic
CCAGTAGTAGGGATAAGAAA+TGG 0.469745 3:+38975551 None:intergenic
CGTACAACAATACCAGTAGT+AGG 0.470380 3:+38975539 None:intergenic
CCATTTCTTATCCCTACTAC+TGG 0.470967 3:-38975551 MsG0380013473.01.T01:intron
TTCATTAGCATGACCAAAAG+TGG 0.472214 3:+38976476 None:intergenic
ATCTACTACTTGGACAGACT+TGG 0.485093 3:-38976804 MsG0380013473.01.T01:five_prime_UTR
CTTCATCCATTCACAGCCTC+AGG 0.485436 3:-38976847 MsG0380013473.01.T01:five_prime_UTR
TCCAGGGCCGGTTAACATAC+CGG 0.489689 3:-38975693 MsG0380013473.01.T01:CDS
AGAGTTTGAAATTTCAAGCA+AGG 0.501611 3:-38975761 MsG0380013473.01.T01:five_prime_UTR
CCACCTCTTTGTTCCAGGGC+CGG 0.504114 3:-38975705 MsG0380013473.01.T01:CDS
TATTATCCGTGTCGGCGTAT+CGG 0.504190 3:-38975967 MsG0380013473.01.T01:intron
ACAAGATTAACACATGCAAA+AGG 0.514762 3:+38976526 None:intergenic
ATAGCACGAATGACCTGGTC+CGG 0.521295 3:+38975674 None:intergenic
TTATATAGGTGGTTCTTTGG+TGG 0.521588 3:-38975813 MsG0380013473.01.T01:intron
GAGTTTGAAATTTCAAGCAA+GGG 0.526677 3:-38975760 MsG0380013473.01.T01:five_prime_UTR
AAATTGGAACTGATGCTGAT+TGG 0.534023 3:+38976346 None:intergenic
ATAGTTGTTCTATTATTCCA+TGG 0.535568 3:+38975905 None:intergenic
GCCGGTTAACATACCGGACC+AGG 0.546518 3:-38975687 MsG0380013473.01.T01:CDS
GAGCATCCTGAGGCTGTGAA+TGG 0.552731 3:+38976841 None:intergenic
TGTCCAAGTAGTAGATAAGA+GGG 0.556161 3:+38976811 None:intergenic
ATGCCAAGAGCATTTGGCAG+TGG 0.557775 3:-38976721 MsG0380013473.01.T01:five_prime_UTR
GTCCGTGCTTCATAGTTCCA+TGG 0.564262 3:+38976063 None:intergenic
TACCATGGAACTATGAAGCA+CGG 0.565663 3:-38976065 MsG0380013473.01.T01:intron
TCTCAAATTATTATCCGTGT+CGG 0.572845 3:-38975975 MsG0380013473.01.T01:intron
GTTTGGTGAAGTATGGCAGA+AGG 0.575524 3:+38976685 None:intergenic
ATGGATTATGTTAATGGACC+AGG 0.579109 3:-38975734 MsG0380013473.01.T01:CDS
CAGATACCGATACGCCGACA+CGG 0.583090 3:+38975961 None:intergenic
GGCTCATAGCACGAATGACC+TGG 0.583959 3:+38975669 None:intergenic
TGTAATCATAGGCGTCGTGT+CGG 0.586846 3:+38976014 None:intergenic
GAAACCACCTCTTTGTTCCA+GGG 0.597103 3:-38975709 MsG0380013473.01.T01:CDS
TGAAGCACATACACTGACAC+TGG 0.600667 3:+38975931 None:intergenic
TGTCGAACACACCTAATTCG+AGG 0.605117 3:+38976037 None:intergenic
GTACAACAATACCAGTAGTA+GGG 0.606832 3:+38975540 None:intergenic
GTGTATGTGCTTCATAACCA+TGG 0.612411 3:-38975922 MsG0380013473.01.T01:intron
GAGGCTGTGAATGGATGAAG+TGG 0.621141 3:+38976850 None:intergenic
GATGAAGTGGAACATTTCAG+TGG 0.630228 3:+38976863 None:intergenic
TGCTATGAGCCGAAACAACG+AGG 0.669595 3:-38975657 MsG0380013473.01.T01:CDS
ATACTTCACCAAACTACCTG+AGG 0.670987 3:-38976676 MsG0380013473.01.T01:intron
CCGGCCCTGGAACAAAGAGG+TGG 0.671461 3:+38975705 None:intergenic
TAACCGGCCCTGGAACAAAG+AGG 0.689828 3:+38975702 None:intergenic
GGGAGAAAATGAGCATCCTG+AGG 0.699460 3:+38976831 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TACTTTATAAAGTATAAAAA+GGG + Chr3:38973925-38973944 None:intergenic 10.0%
!!! ATATCCTTTTTATAAATTAT+TGG - Chr3:38976225-38976244 MsG0380013473.01.T01:intron 10.0%
!! AATGCCAATAATTTATAAAA+AGG + Chr3:38976232-38976251 None:intergenic 15.0%
!! ACTTTATAAAGTATAAAAAG+GGG + Chr3:38973924-38973943 None:intergenic 15.0%
!! CTACTTTATAAAGTATAAAA+AGG + Chr3:38973926-38973945 None:intergenic 15.0%
!!! AAAAAGAATCAGAAATTTTA+AGG + Chr3:38973519-38973538 None:intergenic 15.0%
!!! TATATCATATATGCTTTTTT+TGG - Chr3:38973672-38973691 MsG0380013473.01.T01:CDS 15.0%
!!! TTTTTATTGTCTTTATGAAA+TGG - Chr3:38976468-38976487 MsG0380013473.01.T01:intron 15.0%
!! CCAAAATTGAATGAAATATA+TGG + Chr3:38975480-38975499 None:intergenic 20.0%
!! CTATACAAAAAAAAAAGCTT+TGG - Chr3:38973713-38973732 MsG0380013473.01.T01:CDS 20.0%
!! TAGTTTCAGAAATATTACTT+AGG - Chr3:38976114-38976133 MsG0380013473.01.T01:intron 20.0%
!! TCATGAAACAGTAAATATAT+TGG + Chr3:38974039-38974058 None:intergenic 20.0%
!! TTGAATAATTCAATACAACT+AGG + Chr3:38975086-38975105 None:intergenic 20.0%
!!! AACAAAAGTAATATTTGCTA+AGG + Chr3:38976078-38976097 None:intergenic 20.0%
!!! ATTATTTTCATAAGCTATCT+TGG + Chr3:38975211-38975230 None:intergenic 20.0%
!!! ATTTACGTTTTATCTTTATC+AGG - Chr3:38975608-38975627 MsG0380013473.01.T01:CDS 20.0%
!!! CAAAGCTTTTTTTTTTGTAT+AGG + Chr3:38973715-38973734 None:intergenic 20.0%
!!! CCATATATTTCATTCAATTT+TGG - Chr3:38975477-38975496 MsG0380013473.01.T01:intron 20.0%
!!! CTCAAAACAAAATTTGTTTA+TGG + Chr3:38976363-38976382 None:intergenic 20.0%
!!! CTTTGTGATGTATTTTATAT+AGG - Chr3:38974465-38974484 MsG0380013473.01.T01:intron 20.0%
!!! TTGTTTTATTTTGCATGTAT+TGG - Chr3:38975540-38975559 MsG0380013473.01.T01:intron 20.0%
! AATAAACTGAAAACAGCTTA+TGG + Chr3:38975176-38975195 None:intergenic 25.0%
! ATAGTTGTTCTATTATTCCA+TGG + Chr3:38974390-38974409 None:intergenic 25.0%
! ATTAAGCTGAAAACAACTTA+TGG + Chr3:38974898-38974917 None:intergenic 25.0%
! CAACATCGACATTAAATTTA+AGG + Chr3:38975789-38975808 None:intergenic 25.0%
! CTAAGTCATGTATGTAAATA+AGG + Chr3:38975399-38975418 None:intergenic 25.0%
! GAGACTACTAATACTAAAAT+TGG + Chr3:38973965-38973984 None:intergenic 25.0%
! TAAATTTAATGTCGATGTTG+TGG - Chr3:38975789-38975808 MsG0380013473.01.T01:five_prime_UTR 25.0%
! TATAAAGTATAAAAAGGGGT+GGG + Chr3:38973920-38973939 None:intergenic 25.0%
! TATTGGAGGTTACAAAATAA+TGG - Chr3:38975557-38975576 MsG0380013473.01.T01:CDS 25.0%
! TTACATATCTCGATAATCAT+TGG + Chr3:38976389-38976408 None:intergenic 25.0%
! TTATAAAGTATAAAAAGGGG+TGG + Chr3:38973921-38973940 None:intergenic 25.0%
! TTTCAGAAATATTACTTAGG+TGG - Chr3:38976117-38976136 MsG0380013473.01.T01:intron 25.0%
!! ATTTTATATAGGTGGTTCTT+TGG - Chr3:38974476-38974495 MsG0380013473.01.T01:intron 25.0%
!! GTATTAAATTGTGTGTGTTT+TGG - Chr3:38975509-38975528 MsG0380013473.01.T01:intron 25.0%
!! GTTTTATCTTTATCAGGATA+TGG - Chr3:38975614-38975633 MsG0380013473.01.T01:CDS 25.0%
!! TGTAATAACGTTTTTGCATT+TGG - Chr3:38975651-38975670 MsG0380013473.01.T01:CDS 25.0%
!! TGTGATGTATTTTATATAGG+TGG - Chr3:38974468-38974487 MsG0380013473.01.T01:intron 25.0%
!!! AAGAATCAGAAATTTTAAGG+TGG + Chr3:38973516-38973535 None:intergenic 25.0%
!!! AGAATCAGAAATTTTAAGGT+GGG + Chr3:38973515-38973534 None:intergenic 25.0%
!!! TTGTAGTTTTTTTTAGCAAG+TGG - Chr3:38974131-38974150 MsG0380013473.01.T01:intron 25.0%
!!! TTTTATTTTGCATGTATTGG+AGG - Chr3:38975543-38975562 MsG0380013473.01.T01:intron 25.0%
AAAAAAACTACAAGTAGCTG+AGG + Chr3:38974124-38974143 None:intergenic 30.0%
AAAGAAAACTCGAAGTGATT+TGG + Chr3:38976704-38976723 None:intergenic 30.0%
ACAAGATTAACACATGCAAA+AGG + Chr3:38973769-38973788 None:intergenic 30.0%
ACATGATTCAGTGTAATCAT+AGG + Chr3:38974292-38974311 None:intergenic 30.0%
CATACAAACATTGAACAACT+TGG + Chr3:38974789-38974808 None:intergenic 30.0%
GAAATATTACTTAGGTGGTA+AGG - Chr3:38976122-38976141 MsG0380013473.01.T01:intron 30.0%
GACTTGACAATATTATTGCA+AGG - Chr3:38976836-38976855 MsG0380013473.01.T01:five_prime_UTR 30.0%
GTATTAGTAGTCTCTCATAT+AGG - Chr3:38973971-38973990 MsG0380013473.01.T01:intron 30.0%
TCTCAAATTATTATCCGTGT+CGG - Chr3:38974317-38974336 MsG0380013473.01.T01:intron 30.0%
! AGAGTTTGAAATTTCAAGCA+AGG - Chr3:38974531-38974550 MsG0380013473.01.T01:intron 30.0%
! ATAAGTATGCATCTGAAACT+TGG - Chr3:38976289-38976308 MsG0380013473.01.T01:intron 30.0%
! GAGTTTGAAATTTCAAGCAA+GGG - Chr3:38974532-38974551 MsG0380013473.01.T01:intron 30.0%
! TACAACAAAGATGAGTGTTT+TGG + Chr3:38973842-38973861 None:intergenic 30.0%
! TAGGATATAGTCTGAACTTT+TGG - Chr3:38973990-38974009 MsG0380013473.01.T01:intron 30.0%
! TCAGTCACAAATTTTTACCA+TGG - Chr3:38974212-38974231 MsG0380013473.01.T01:intron 30.0%
! TTGGATAGAATCAGATTTTG+TGG + Chr3:38975993-38976012 None:intergenic 30.0%
!! AAGATTTTCAAGACTACTAC+TGG - Chr3:38974714-38974733 MsG0380013473.01.T01:intron 30.0%
!! AGTTTTATGACTTCCACTTT+TGG - Chr3:38973803-38973822 MsG0380013473.01.T01:intron 30.0%
!!! GAATCAGAAATTTTAAGGTG+GGG + Chr3:38973514-38973533 None:intergenic 30.0%
AAATCCAATACCAGTAGGAA+GGG + Chr3:38976641-38976660 None:intergenic 35.0%
AAATTGGAACTGATGCTGAT+TGG + Chr3:38973949-38973968 None:intergenic 35.0%
AAATTTCAAGCAAGGGAAGA+TGG - Chr3:38974539-38974558 MsG0380013473.01.T01:intron 35.0%
AAGACCATAAAGAAGCTGAA+TGG + Chr3:38976785-38976804 None:intergenic 35.0%
AAGTTGTTTATCGAAAGACG+CGG - Chr3:38975058-38975077 MsG0380013473.01.T01:intron 35.0%
ACAAAATAATGGCCTGAGAT+TGG - Chr3:38975568-38975587 MsG0380013473.01.T01:CDS 35.0%
ATCAAGAAATCAACATGCGA+AGG + Chr3:38976169-38976188 None:intergenic 35.0%
CGTATTGTATCTTTCGTGAT+TGG - Chr3:38975727-38975746 MsG0380013473.01.T01:CDS 35.0%
CTTAATTCCATAATCTCTCC+AGG - Chr3:38974912-38974931 MsG0380013473.01.T01:intron 35.0%
GTACAACAATACCAGTAGTA+GGG + Chr3:38974755-38974774 None:intergenic 35.0%
TACCTGAAGTTCTACAAGAT+GGG - Chr3:38976736-38976755 MsG0380013473.01.T01:five_prime_UTR 35.0%
TATATAGGTGGTTCTTTGGT+GGG - Chr3:38974480-38974499 MsG0380013473.01.T01:intron 35.0%
TCTACAAGATGGGAACTTAT+TGG - Chr3:38976746-38976765 MsG0380013473.01.T01:five_prime_UTR 35.0%
TGATTCTGCACACACTATAA+AGG - Chr3:38975866-38975885 MsG0380013473.01.T01:intron 35.0%
TGTCCAAGTAGTAGATAAGA+GGG + Chr3:38973484-38973503 None:intergenic 35.0%
TTATATAGGTGGTTCTTTGG+TGG - Chr3:38974479-38974498 MsG0380013473.01.T01:intron 35.0%
TTCATTAGCATGACCAAAAG+TGG + Chr3:38973819-38973838 None:intergenic 35.0%
! AGCTCTTGATCTGATTTTTG+AGG - Chr3:38976810-38976829 MsG0380013473.01.T01:five_prime_UTR 35.0%
! ATGGATTATGTTAATGGACC+AGG - Chr3:38974558-38974577 MsG0380013473.01.T01:CDS 35.0%
! GGTCTAATTGATTCTCTGTT+TGG + Chr3:38975326-38975345 None:intergenic 35.0%
! TTGAACAACTTGGTTAGTCA+AGG + Chr3:38974779-38974798 None:intergenic 35.0%
! TTGAAGCTTCAATGGCTTTA+GGG + Chr3:38976675-38976694 None:intergenic 35.0%
! TTTGAAGCTTCAATGGCTTT+AGG + Chr3:38976676-38976695 None:intergenic 35.0%
!! AAAGTTATGCCAAGAGCATT+TGG - Chr3:38973565-38973584 MsG0380013473.01.T01:CDS 35.0%
!! AACGTTTTTGCATTTGGTTC+AGG - Chr3:38975657-38975676 MsG0380013473.01.T01:CDS 35.0%
!! CACTTCGAGTTTTCTTTGAT+TGG - Chr3:38976707-38976726 MsG0380013473.01.T01:five_prime_UTR 35.0%
!! CTTGATCTGATTTTTGAGGA+AGG - Chr3:38976814-38976833 MsG0380013473.01.T01:five_prime_UTR 35.0%
!! GGGAAGATGGATTATGTTAA+TGG - Chr3:38974552-38974571 MsG0380013473.01.T01:intron 35.0%
AAAGTAAGTGAGTGTACCTC+AGG + Chr3:38973635-38973654 None:intergenic 40.0%
AACGATAGTCCTCGTTGTTT+CGG + Chr3:38974647-38974666 None:intergenic 40.0%
AAGCTATCCTGGAGAGATTA+TGG + Chr3:38974922-38974941 None:intergenic 40.0%
AAGTATAAAAAGGGGTGGGT+AGG + Chr3:38973916-38973935 None:intergenic 40.0%
AATACCAGTAGGAAGGGAAA+GGG + Chr3:38976635-38976654 None:intergenic 40.0%
AATCTCTCCAGGATAGCTTA+TGG - Chr3:38974923-38974942 MsG0380013473.01.T01:intron 40.0%
ACCACAAATCCAATACCAGT+AGG + Chr3:38976646-38976665 None:intergenic 40.0%
ACTCTTTCCATAAGCTATCC+TGG + Chr3:38974933-38974952 None:intergenic 40.0%
AGTTGTTTATCGAAAGACGC+GGG - Chr3:38975059-38975078 MsG0380013473.01.T01:intron 40.0%
ATACTTCACCAAACTACCTG+AGG - Chr3:38973616-38973635 MsG0380013473.01.T01:CDS 40.0%
ATCTACTACTTGGACAGACT+TGG - Chr3:38973488-38973507 MsG0380013473.01.T01:CDS 40.0%
ATGGCACTCACATTGTAGTT+TGG - Chr3:38976487-38976506 MsG0380013473.01.T01:intron 40.0%
ATGTGTGTACAATGACAGCT+TGG + Chr3:38976012-38976031 None:intergenic 40.0%
CAAATCCAATACCAGTAGGA+AGG + Chr3:38976642-38976661 None:intergenic 40.0%
CAACCCAAAGCAAACTGAAT+TGG + Chr3:38975753-38975772 None:intergenic 40.0%
CAGAGAATCAATTAGACCAC+TGG - Chr3:38975328-38975347 MsG0380013473.01.T01:intron 40.0%
CCAGTAGTAGGGATAAGAAA+TGG + Chr3:38974744-38974763 None:intergenic 40.0%
CCATAAAGAAGCTGAATGGA+AGG + Chr3:38976781-38976800 None:intergenic 40.0%
CCATTTCTTATCCCTACTAC+TGG - Chr3:38974741-38974760 MsG0380013473.01.T01:intron 40.0%
CCTTCCATTCAGCTTCTTTA+TGG - Chr3:38976778-38976797 MsG0380013473.01.T01:five_prime_UTR 40.0%
CGAAAGATACAATACGATCC+AGG + Chr3:38975723-38975742 None:intergenic 40.0%
CGATGTTGTGGAAAGTGAAT+GGG - Chr3:38975801-38975820 MsG0380013473.01.T01:five_prime_UTR 40.0%
CGTACAACAATACCAGTAGT+AGG + Chr3:38974756-38974775 None:intergenic 40.0%
CTACCTGAAGTTCTACAAGA+TGG - Chr3:38976735-38976754 MsG0380013473.01.T01:five_prime_UTR 40.0%
CTCCTAGTTTCACTGTTCAA+TGG - Chr3:38976033-38976052 MsG0380013473.01.T01:intron 40.0%
CTGTCCAAGTAGTAGATAAG+AGG + Chr3:38973485-38973504 None:intergenic 40.0%
GACCATTGAACAGTGAAACT+AGG + Chr3:38976038-38976057 None:intergenic 40.0%
GAGCATCATCCTGATTACTA+AGG + Chr3:38975358-38975377 None:intergenic 40.0%
GATGAAGTGGAACATTTCAG+TGG + Chr3:38973432-38973451 None:intergenic 40.0%
GATGTTGTGGAAAGTGAATG+GGG - Chr3:38975802-38975821 MsG0380013473.01.T01:five_prime_UTR 40.0%
GCCACAGTTAGAAAACTTCT+CGG - Chr3:38975939-38975958 MsG0380013473.01.T01:intron 40.0%
GTGTATGTGCTTCATAACCA+TGG - Chr3:38974370-38974389 MsG0380013473.01.T01:CDS 40.0%
GTTCATAATGAGACTGCAAC+TGG - Chr3:38975900-38975919 MsG0380013473.01.T01:intron 40.0%
TACCATGGAACTATGAAGCA+CGG - Chr3:38974227-38974246 MsG0380013473.01.T01:intron 40.0%
TCGATGTTGTGGAAAGTGAA+TGG - Chr3:38975800-38975819 MsG0380013473.01.T01:five_prime_UTR 40.0%
TCTAACTGTGGCCAAGTTAT+TGG + Chr3:38975931-38975950 None:intergenic 40.0%
TCTCCCTCTTATCTACTACT+TGG - Chr3:38973478-38973497 MsG0380013473.01.T01:CDS 40.0%
TTCACTCGCAACGTCATAAT+TGG - Chr3:38976328-38976347 MsG0380013473.01.T01:intron 40.0%
TTCCCATCTTGTAGAACTTC+AGG + Chr3:38976741-38976760 None:intergenic 40.0%
! ACCGAGAAGTTTTCTAACTG+TGG + Chr3:38975943-38975962 None:intergenic 40.0%
! AGCTGAATGGAAGGAGTATA+TGG + Chr3:38976772-38976791 None:intergenic 40.0%
! AGTAGAGTTTTTGTCAGAGC+TGG + Chr3:38974681-38974700 None:intergenic 40.0%
! TCAGGTAGTTTGGTGAAGTA+TGG + Chr3:38973617-38973636 None:intergenic 40.0%
! TCCTACTGGTATTGGATTTG+TGG - Chr3:38976642-38976661 MsG0380013473.01.T01:intron 40.0%
! TGGCCAATTCAGTTTGCTTT+GGG - Chr3:38975747-38975766 MsG0380013473.01.T01:exon 40.0%
! TTGGCCAATTCAGTTTGCTT+TGG - Chr3:38975746-38975765 MsG0380013473.01.T01:exon 40.0%
! TTTGCATTTGGTTCAGGTAC+CGG - Chr3:38975663-38975682 MsG0380013473.01.T01:CDS 40.0%
!! AACTGGTGTCACCAATAACT+TGG - Chr3:38975917-38975936 MsG0380013473.01.T01:intron 40.0%
!!! GGCAGATTTTGAAGCTTCAA+TGG + Chr3:38976683-38976702 None:intergenic 40.0%
ACAAAGAGGTGGTTTCTTCC+TGG + Chr3:38974579-38974598 None:intergenic 45.0%
ACCTGGTAGCTGTACCTAAA+CGG + Chr3:38976867-38976886 None:intergenic 45.0%
ACTGGACTGCCTTAGTAATC+AGG - Chr3:38975346-38975365 MsG0380013473.01.T01:intron 45.0%
AGAAACCACCTCTTTGTTCC+AGG - Chr3:38974582-38974601 MsG0380013473.01.T01:CDS 45.0%
ATGACACTCCATCAACAAGG+AGG + Chr3:38976543-38976562 None:intergenic 45.0%
ATTGCAAGGCACAACCGTTT+AGG - Chr3:38976850-38976869 MsG0380013473.01.T01:five_prime_UTR 45.0%
CAATACCAGTAGGAAGGGAA+AGG + Chr3:38976636-38976655 None:intergenic 45.0%
CGATTTCCGTATGGACGAAT+GGG - Chr3:38976576-38976595 MsG0380013473.01.T01:intron 45.0%
CTTAGGTGGTAAGGTTCTGT+TGG - Chr3:38976131-38976150 MsG0380013473.01.T01:intron 45.0%
CTTTCCCTTCCTACTGGTAT+TGG - Chr3:38976634-38976653 MsG0380013473.01.T01:intron 45.0%
GAAACCACCTCTTTGTTCCA+GGG - Chr3:38974583-38974602 MsG0380013473.01.T01:CDS 45.0%
GATTTCCGTATGGACGAATG+GGG - Chr3:38976577-38976596 MsG0380013473.01.T01:intron 45.0%
TCGATTTCCGTATGGACGAA+TGG - Chr3:38976575-38976594 MsG0380013473.01.T01:intron 45.0%
TGAAGCACATACACTGACAC+TGG + Chr3:38974364-38974383 None:intergenic 45.0%
TGAGTGTACCTCAGGTAGTT+TGG + Chr3:38973627-38973646 None:intergenic 45.0%
TGATTACTAAGGCAGTCCAG+TGG + Chr3:38975347-38975366 None:intergenic 45.0%
TGGATGACACTCCATCAACA+AGG + Chr3:38976546-38976565 None:intergenic 45.0%
TGTCGAACACACCTAATTCG+AGG + Chr3:38974258-38974277 None:intergenic 45.0%
TTGACAAACACATTGTCGCC+TGG - Chr3:38975702-38975721 MsG0380013473.01.T01:CDS 45.0%
TTGTGCTCTCGATTTCCGTA+TGG - Chr3:38976567-38976586 MsG0380013473.01.T01:intron 45.0%
TTTGTCAGAGCTGGAATTGC+AGG + Chr3:38974672-38974691 None:intergenic 45.0%
! ACGGAAATCGAGAGCACAAA+TGG + Chr3:38976566-38976585 None:intergenic 45.0%
! GGCTTTCTGAGAACCAGTTA+TGG + Chr3:38976614-38976633 None:intergenic 45.0%
! GTTTGGTGAAGTATGGCAGA+AGG + Chr3:38973610-38973629 None:intergenic 45.0%
! TATTATCCGTGTCGGCGTAT+CGG - Chr3:38974325-38974344 MsG0380013473.01.T01:intron 45.0%
! TGTAATCATAGGCGTCGTGT+CGG + Chr3:38974281-38974300 None:intergenic 45.0%
AAAGCCCTTTCCCTTCCTAC+TGG - Chr3:38976628-38976647 MsG0380013473.01.T01:intron 50.0%
ACACTCCATCAACAAGGAGG+AGG + Chr3:38976540-38976559 None:intergenic 50.0%
ACCGTTTAGGTACAGCTACC+AGG - Chr3:38976863-38976882 MsG0380013473.01.T01:five_prime_UTR 50.0%
ACCTGGTCCGGTATGTTAAC+CGG + Chr3:38974609-38974628 None:intergenic 50.0%
ATAGCACGAATGACCTGGTC+CGG + Chr3:38974621-38974640 None:intergenic 50.0%
CACTCCATCAACAAGGAGGA+GGG + Chr3:38976539-38976558 None:intergenic 50.0%
CTACTCCCCATTCGTCCATA+CGG + Chr3:38976585-38976604 None:intergenic 50.0%
CTTCATCCATTCACAGCCTC+AGG - Chr3:38973445-38973464 MsG0380013473.01.T01:CDS 50.0%
GAGGCTGTGAATGGATGAAG+TGG + Chr3:38973445-38973464 None:intergenic 50.0%
GCTCTTGCTGAACCAATCTC+AGG + Chr3:38975583-38975602 None:intergenic 50.0%
GGAGTAGATGTGGCCATAAC+TGG - Chr3:38976598-38976617 MsG0380013473.01.T01:intron 50.0%
GGGAGAAAATGAGCATCCTG+AGG + Chr3:38973464-38973483 None:intergenic 50.0%
GTCCGTGCTTCATAGTTCCA+TGG + Chr3:38974232-38974251 None:intergenic 50.0%
TAAAAAGGGGTGGGTAGGTG+AGG + Chr3:38973911-38973930 None:intergenic 50.0%
TGCTATGAGCCGAAACAACG+AGG - Chr3:38974635-38974654 MsG0380013473.01.T01:intron 50.0%
!! ATGCCAAGAGCATTTGGCAG+TGG - Chr3:38973571-38973590 MsG0380013473.01.T01:CDS 50.0%
CAGATACCGATACGCCGACA+CGG + Chr3:38974334-38974353 None:intergenic 55.0%
CTGCCACTGCCAAATGCTCT+TGG + Chr3:38973577-38973596 None:intergenic 55.0%
GAGCATCCTGAGGCTGTGAA+TGG + Chr3:38973454-38973473 None:intergenic 55.0%
GGACGAATGGGGAGTAGATG+TGG - Chr3:38976588-38976607 MsG0380013473.01.T01:intron 55.0%
GGCTCATAGCACGAATGACC+TGG + Chr3:38974626-38974645 None:intergenic 55.0%
GTGGAAAGTGAATGGGGCTG+TGG - Chr3:38975808-38975827 MsG0380013473.01.T01:five_prime_UTR 55.0%
TAACCGGCCCTGGAACAAAG+AGG + Chr3:38974593-38974612 None:intergenic 55.0%
TCCAGGGCCGGTTAACATAC+CGG - Chr3:38974599-38974618 MsG0380013473.01.T01:CDS 55.0%
! CAAAGCACTCTCCCAAGCAC+CGG + Chr3:38975685-38975704 None:intergenic 55.0%
!! TGGTTCAGGTACCGGTGCTT+GGG - Chr3:38975671-38975690 MsG0380013473.01.T01:CDS 55.0%
!! TTGGTTCAGGTACCGGTGCT+TGG - Chr3:38975670-38975689 MsG0380013473.01.T01:CDS 55.0%
CAAGGAGGAGGGCTGGATGT+TGG + Chr3:38976528-38976547 None:intergenic 60.0%
CCACCTCTTTGTTCCAGGGC+CGG - Chr3:38974587-38974606 MsG0380013473.01.T01:CDS 60.0%
CCAGCCCTCCTCCTTGTTGA+TGG - Chr3:38976532-38976551 MsG0380013473.01.T01:intron 60.0%
CCATCAACAAGGAGGAGGGC+TGG + Chr3:38976535-38976554 None:intergenic 60.0%
GCACGGACGCTCCTCGAATT+AGG - Chr3:38974244-38974263 MsG0380013473.01.T01:intron 60.0%
GCCGGTTAACATACCGGACC+AGG - Chr3:38974605-38974624 MsG0380013473.01.T01:CDS 60.0%
TCCGGTATGTTAACCGGCCC+TGG + Chr3:38974603-38974622 None:intergenic 60.0%
CCGGCCCTGGAACAAAGAGG+TGG + Chr3:38974590-38974609 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr3 gene 38973426 38976888 38973426 ID=MsG0380013473.01;Name=MsG0380013473.01
Chr3 mRNA 38973426 38976888 38973426 ID=MsG0380013473.01.T01;Parent=MsG0380013473.01;Name=MsG0380013473.01.T01;_AED=0.45;_eAED=0.45;_QI=283|0.75|0.4|1|0.75|0.6|5|0|254
Chr3 exon 38975552 38975827 38975552 ID=MsG0380013473.01.T01:exon:27015;Parent=MsG0380013473.01.T01
Chr3 exon 38976677 38976888 38976677 ID=MsG0380013473.01.T01:exon:27014;Parent=MsG0380013473.01.T01
Chr3 five_prime_UTR 38976677 38976888 38976677 ID=MsG0380013473.01.T01:five_prime_utr;Parent=MsG0380013473.01.T01
Chr3 five_prime_UTR 38975757 38975827 38975757 ID=MsG0380013473.01.T01:five_prime_utr;Parent=MsG0380013473.01.T01
Chr3 CDS 38975552 38975756 38975552 ID=MsG0380013473.01.T01:cds;Parent=MsG0380013473.01.T01
Chr3 CDS 38974557 38974635 38974557 ID=MsG0380013473.01.T01:cds;Parent=MsG0380013473.01.T01
Chr3 CDS 38974354 38974463 38974354 ID=MsG0380013473.01.T01:cds;Parent=MsG0380013473.01.T01
Chr3 CDS 38973426 38973796 38973426 ID=MsG0380013473.01.T01:cds;Parent=MsG0380013473.01.T01
Chr3 mRNA 38973426 38976664 38973426 ID=MsG0380013473.01.T02;Parent=MsG0380013473.01;Name=MsG0380013473.01.T02;_AED=0.43;_eAED=0.43;_QI=908|0.66|0.25|1|1|1|4|0|254
Chr3 exon 38975552 38976664 38975552 ID=MsG0380013473.01.T02:exon:27019;Parent=MsG0380013473.01.T02
Chr3 five_prime_UTR 38975757 38976664 38975757 ID=MsG0380013473.01.T02:five_prime_utr;Parent=MsG0380013473.01.T02
Chr3 CDS 38975552 38975756 38975552 ID=MsG0380013473.01.T02:cds;Parent=MsG0380013473.01.T02
Chr3 CDS 38974557 38974635 38974557 ID=MsG0380013473.01.T02:cds;Parent=MsG0380013473.01.T02
Chr3 CDS 38974354 38974463 38974354 ID=MsG0380013473.01.T02:cds;Parent=MsG0380013473.01.T02
Chr3 CDS 38973426 38973796 38973426 ID=MsG0380013473.01.T02:cds;Parent=MsG0380013473.01.T02
Gene Sequence

>MsG0380013473.01.T02

ATGGATTATGTTAATGGACCAGGAAGAAACCACCTCTTTGTTCCAGGGCCGGTTAACATACCGGACCAGGTCATTCGTGCTATGAGCCGAAACAACGAGGACTATCGTTCTCCTGCAATTCCAGCTCTGACAAAAACTCTACTTGAAGATGTCAAGAAGATTTTCAAGACTACTACTGGAACTCCATTTCTTATCCCTACTACTGGTACCGGTGCTTGGGAGAGTGCTTTGACAAACACATTGTCGCCTGGATCGTATTGTATCTTTCGTGATTGGCCAATTCAAATCAAACTTGCTTCTGATTCTGCACACACTATAAAGGCTATTTGCATTGTTCATAATGAGACTGCAACTGGTGTCACCAATAACTTGGCCACAGTTAGAAAACTTCTCGATGCATACCAACATCCAGCCCTCCTCCTTGTTGATGGAGTGTCATCCATTTGTGCTCTCGATTTCCGTATGGACGAATGGGGAGTAGATGTGGCCATAACTGGTTCTCAGAAAGCCCTTTCCCTTCCTACTGGTATTGGATTTGTGGTTGCAAGCCCTAAAGCCATTGAAGCTTCAAAATCTGCCAAATCACTTCGAGTTTTCTTTGATTGGAGCGACTACCTGAAGTTCTACAAGATGGGAACTTATTGGCCATATACTCCTTCCATTCAGCTTCTTTATGGTCTTAGAGCAGCTCTTGATCTGATTTTTGAGGAAGGACTTGACAATATTATTGCAAGGCACAACCGTTTAGGTACAGCTACCAGGTAA

>MsG0380013473.01.T01

ATGGATTATGTTAATGGACCAGGAAGAAACCACCTCTTTGTTCCAGGGCCGGTTAACATACCGGACCAGGTCATTCGTGCTATGAGCCGAAACAACGAGGACTATCGTTCTCCTGCAATTCCAGCTCTGACAAAAACTCTACTTGAAGATGTCAAGAAGATTTTCAAGACTACTACTGGAACTCCATTTCTTATCCCTACTACTGGTACCGGTGCTTGGGAGAGTGCTTTGACAAACACATTGTCGCCTGGATCGTATTGTATCTTTCGTGATTGGCCAATTCAAATCAAACTTGCTTCTGATTCTGCACACACTATAAAGGCTATTTGCATTGTTCATAATGAGACTGCAACTGGTGTCACCAATAACTTGGCCACAGTTAGAAAACTTCTCGATGCATACCAACATCCAGCCCTCCTCCTTGTTGATGGAGTGTCATCCATTTGTGCTCTCGATTTCCGTATGGACGAATGGGGAGTAGATGTGGCCATAACTGGTTCTCAGAAAGCCCTTTCCCTTCCTACTGGTATTGGATTTGTGGTTGCAAGCCCTAAAGCCATTGAAGCTTCAAAATCTGCCAAATCACTTCGAGTTTTCTTTGATTGGAGCGACTACCTGAAGTTCTACAAGATGGGAACTTATTGGCCATATACTCCTTCCATTCAGCTTCTTTATGGTCTTAGAGCAGCTCTTGATCTGATTTTTGAGGAAGGACTTGACAATATTATTGCAAGGCACAACCGTTTAGGTACAGCTACCAGGTAA

Protein sequence

>MsG0380013473.01.T02

MDYVNGPGRNHLFVPGPVNIPDQVIRAMSRNNEDYRSPAIPALTKTLLEDVKKIFKTTTGTPFLIPTTGTGAWESALTNTLSPGSYCIFRDWPIQIKLASDSAHTIKAICIVHNETATGVTNNLATVRKLLDAYQHPALLLVDGVSSICALDFRMDEWGVDVAITGSQKALSLPTGIGFVVASPKAIEASKSAKSLRVFFDWSDYLKFYKMGTYWPYTPSIQLLYGLRAALDLIFEEGLDNIIARHNRLGTATR*

>MsG0380013473.01.T01

MDYVNGPGRNHLFVPGPVNIPDQVIRAMSRNNEDYRSPAIPALTKTLLEDVKKIFKTTTGTPFLIPTTGTGAWESALTNTLSPGSYCIFRDWPIQIKLASDSAHTIKAICIVHNETATGVTNNLATVRKLLDAYQHPALLLVDGVSSICALDFRMDEWGVDVAITGSQKALSLPTGIGFVVASPKAIEASKSAKSLRVFFDWSDYLKFYKMGTYWPYTPSIQLLYGLRAALDLIFEEGLDNIIARHNRLGTATR*