AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880046469.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880046469.01.T01 MTR_4g108800 93.511 262 6 1 10 271 31 281 2.66e-175 484
MsG0880046469.01.T01 MTR_7g029630 38.667 225 125 3 39 263 7 218 1.96e-45 152
MsG0880046469.01.T01 MTR_0937s0020 50.932 161 66 2 43 203 320 467 5.05e-45 162
MsG0880046469.01.T01 MTR_7g029630 36.296 135 77 2 74 208 15 140 3.15e-20 85.9
MsG0880046469.01.T01 MTR_3g449340 32.867 143 79 4 102 242 1 128 3.64e-12 63.2
MsG0880046469.01.T01 MTR_4g089175 83.333 30 5 0 56 85 22 51 8.87e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880046469.01.T01 AT5G61410 83.636 275 27 2 4 271 18 281 4.12e-165 459
MsG0880046469.01.T01 AT5G61410 83.636 275 27 2 4 271 18 281 4.12e-165 459
MsG0880046469.01.T01 AT3G01850 37.339 233 132 4 39 270 6 225 5.40e-47 157
MsG0880046469.01.T01 AT3G01850 37.339 233 132 4 39 270 6 225 5.40e-47 157
MsG0880046469.01.T01 AT1G63290 39.556 225 123 4 39 263 8 219 8.69e-44 148
MsG0880046469.01.T01 AT3G01850 37.129 202 113 4 70 270 10 198 9.31e-36 127
MsG0880046469.01.T01 AT3G01850 37.129 202 113 4 70 270 10 198 9.31e-36 127

Find 105 sgRNAs with CRISPR-Local

Find 213 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCCGCCAACTTTGCAAAAT+TGG 0.109693 8:+73764149 MsG0880046469.01.T01:CDS
AGAGGTCCAATAGTAATATT+TGG 0.187699 8:-73764373 None:intergenic
GCAGCTTACATTGTTTAAAA+TGG 0.189259 8:-73766616 None:intergenic
TAAGATAATTTAAAGAAAAT+TGG 0.211694 8:-73767382 None:intergenic
AACTCTTAGTTTACCGATAT+TGG 0.216652 8:-73765149 None:intergenic
CATTCCTTTGTAGCTATAAA+AGG 0.220868 8:+73766532 MsG0880046469.01.T01:intron
TATCATAACATCTTTAATTC+AGG 0.299292 8:+73767085 MsG0880046469.01.T01:three_prime_UTR
GATAGCAAGCCATGCCTAAT+TGG 0.327172 8:-73766974 None:intergenic
GTTGCTGGTTCTGCTGTGTT+TGG 0.328175 8:+73766399 MsG0880046469.01.T01:CDS
CTCTCTAGGGTGTGAATCCT+TGG 0.328972 8:+73765941 MsG0880046469.01.T01:intron
TTGGATTCATGTTGATGTTA+TGG 0.329699 8:+73764336 MsG0880046469.01.T01:CDS
GGAGCTAATGCACTGGTTGC+TGG 0.334561 8:+73766384 MsG0880046469.01.T01:CDS
TCACAAACTTGTTTACAGTA+TGG 0.347766 8:-73767156 None:intergenic
TTTGTCCCAAATATTACTAT+TGG 0.352259 8:+73764367 MsG0880046469.01.T01:CDS
CTTTGCAAAATTGGGAGAAC+AGG 0.352968 8:+73764158 MsG0880046469.01.T01:CDS
TTAGCGGAGTACCAGGGTTT+AGG 0.354271 8:-73764988 None:intergenic
TCCGCCAACTTTGCAAAATT+GGG 0.359542 8:+73764150 MsG0880046469.01.T01:CDS
TACTATCAGATTGTAACTTT+CGG 0.370556 8:+73767123 MsG0880046469.01.T01:three_prime_UTR
GCTTATGTGGTTACCAATAT+CGG 0.373501 8:+73765136 MsG0880046469.01.T01:CDS
GAGGCCTTTCACACAGAAAC+TGG 0.388208 8:-73766580 None:intergenic
AAATCTGGCACCCGCTGATC+TGG 0.396879 8:-73764541 None:intergenic
AGCACCTTGTAAGCATTTGC+TGG 0.401136 8:-73765988 None:intergenic
CATATTTGTGTATAATCTCT+TGG 0.401167 8:+73767060 MsG0880046469.01.T01:three_prime_UTR
GCTCCTGCTTTGATGAAATC+TGG 0.406074 8:-73764556 None:intergenic
CCCTGTGACAGATTTACCTT+TGG 0.408758 8:+73764414 MsG0880046469.01.T01:CDS
TAGAGTTGGCTGGTTGTGAT+TGG 0.411673 8:+73764317 MsG0880046469.01.T01:CDS
ATCTTGCATGTAGTCCTCTT+CGG 0.416428 8:-73767349 None:intergenic
GAGAAGATTGTGCGTGGAGA+AGG 0.423151 8:+73765824 MsG0880046469.01.T01:CDS
ATATTGTCCTCGTTATCGTT+AGG 0.426759 8:+73767301 MsG0880046469.01.T01:three_prime_UTR
TCATGGTCAGCAGGCCAATT+AGG 0.433935 8:+73766960 MsG0880046469.01.T01:three_prime_UTR
TTGGTAACCACATAAGCATA+TGG 0.439755 8:-73765130 None:intergenic
AACCTGACAGATAATGTTCA+TGG 0.442153 8:+73766943 MsG0880046469.01.T01:intron
TCTGTAAACCCTGGCTTTGG+TGG 0.447445 8:+73765759 MsG0880046469.01.T01:CDS
GAGGTCCAATAGTAATATTT+GGG 0.451344 8:-73764372 None:intergenic
GATTAATTGCACGATGCAAA+TGG 0.460222 8:-73764618 None:intergenic
ATTTGGCAGGTGATTGAGGC+TGG 0.461400 8:+73766363 MsG0880046469.01.T01:intron
AGGTTTCCCATATGCTTATG+TGG 0.465633 8:+73765123 MsG0880046469.01.T01:intron
GTGAAAGGCCTCCGCGGTAT+CGG 0.465939 8:+73766591 MsG0880046469.01.T01:exon
CACCACCTGCAATTTCTCTC+TGG 0.465968 8:+73766996 MsG0880046469.01.T01:three_prime_UTR
GGTGCTGGCAGTGGTTGACT+TGG 0.467221 8:+73765725 MsG0880046469.01.T01:intron
AAACTCTGGCCACCAAAGCC+AGG 0.471474 8:-73765768 None:intergenic
GCAATAGAATATGTTCTTGA+TGG 0.472384 8:+73765013 MsG0880046469.01.T01:CDS
ATTGCACTTAGCGGAGTACC+AGG 0.474775 8:-73764995 None:intergenic
ATGTCTGTAAACCCTGGCTT+TGG 0.475764 8:+73765756 MsG0880046469.01.T01:CDS
AAAAGCCTGGGAGCTAAAGC+TGG 0.477458 8:+73764959 MsG0880046469.01.T01:CDS
CTATTAACACCCATGGTGCT+AGG 0.482192 8:-73767260 None:intergenic
CAACTCCAGCTTTAGCTCCC+AGG 0.485580 8:-73764964 None:intergenic
ATCACAACAAAGGCATTACT+TGG 0.489578 8:-73767036 None:intergenic
AAGTTGGCGGAAAGAATAGA+TGG 0.490752 8:-73764138 None:intergenic
TGCACGATGCAAATGGATAG+TGG 0.498424 8:-73764611 None:intergenic
GTGCCAGATTTCATCAAAGC+AGG 0.505243 8:+73764553 MsG0880046469.01.T01:CDS
GCACCTTGTAAGCATTTGCT+GGG 0.508474 8:-73765987 None:intergenic
TAATTCCAGAGAGAAATTGC+AGG 0.511982 8:-73767001 None:intergenic
TATTACTATTGGACCTCTTG+TGG 0.513189 8:+73764378 MsG0880046469.01.T01:CDS
AGTTTCATCCCTAGCACCAT+GGG 0.513708 8:+73767251 MsG0880046469.01.T01:three_prime_UTR
ACATATTCTATTGCACTTAG+CGG 0.514934 8:-73765004 None:intergenic
TTTACCTTTGGATGTCCACC+TGG 0.515412 8:+73764426 MsG0880046469.01.T01:CDS
GATAACGAGGACAATATAAG+AGG 0.515664 8:-73767295 None:intergenic
TCCAAAGGTAAATCTGTCAC+AGG 0.515740 8:-73764415 None:intergenic
AGATAATGTTCATGGTCAGC+AGG 0.516204 8:+73766951 MsG0880046469.01.T01:intron
TGTTATTTGGCAGGTGATTG+AGG 0.527723 8:+73766359 MsG0880046469.01.T01:intron
CTTGGCTCTCGATAAAACTC+TGG 0.531835 8:-73765782 None:intergenic
CCTTGGATTGAAGTGGATGG+TGG 0.541023 8:+73765958 MsG0880046469.01.T01:CDS
CTTGGATTGAAGTGGATGGT+GGG 0.541584 8:+73765959 MsG0880046469.01.T01:CDS
TACCCCAGCAAATGCTTACA+AGG 0.545343 8:+73765984 MsG0880046469.01.T01:CDS
TGGTAACCACATAAGCATAT+GGG 0.551894 8:-73765129 None:intergenic
CTAGGTAAAAGCAGTAGAGT+TGG 0.552705 8:+73764303 MsG0880046469.01.T01:intron
GATTGTAGAACCAGATCAGC+GGG 0.553131 8:+73764531 MsG0880046469.01.T01:CDS
TGAGCCAGTTTCTGTGTGAA+AGG 0.553781 8:+73766576 MsG0880046469.01.T01:exon
GAAACTGAATGATATTAACT+TGG 0.556192 8:-73767234 None:intergenic
GTAAAAGCAGTAGAGTTGGC+TGG 0.557874 8:+73764307 MsG0880046469.01.T01:CDS
GGAGCTAAAGATTATGCTGA+AGG 0.567422 8:+73766420 MsG0880046469.01.T01:CDS
TAAAATGATTCTACGAGGAG+TGG 0.567621 8:-73763894 None:intergenic
TTAATTATGTCTGTAAACCC+TGG 0.567653 8:+73765750 MsG0880046469.01.T01:CDS
ATTCATGTTGATGTTATGGA+TGG 0.568834 8:+73764340 MsG0880046469.01.T01:CDS
TATTAACACCCATGGTGCTA+GGG 0.568950 8:-73767259 None:intergenic
CAGTTTCATCCCTAGCACCA+TGG 0.575551 8:+73767250 MsG0880046469.01.T01:three_prime_UTR
AACTCTGGCCACCAAAGCCA+GGG 0.576163 8:-73765767 None:intergenic
CAAACTTGTTTACAGTATGG+TGG 0.581814 8:-73767153 None:intergenic
ACAAATATGCATCACAACAA+AGG 0.584229 8:-73767046 None:intergenic
CGCAATGCATCAACCACAAG+AGG 0.585518 8:-73764391 None:intergenic
TTTCACACAGAAACTGGCTC+AGG 0.586572 8:-73766574 None:intergenic
CCACCATCCACTTCAATCCA+AGG 0.590960 8:-73765958 None:intergenic
AATACCAGGTGGACATCCAA+AGG 0.598223 8:-73764430 None:intergenic
TGAGGCTGGAGCTAATGCAC+TGG 0.611831 8:+73766377 MsG0880046469.01.T01:CDS
GTCAGCAGGCCAATTAGGCA+TGG 0.614879 8:+73766965 MsG0880046469.01.T01:three_prime_UTR
TGTGAATCCTTGGATTGAAG+TGG 0.621250 8:+73765951 MsG0880046469.01.T01:CDS
CAGGAGGAAAATTTCAACTG+TGG 0.630527 8:+73764062 MsG0880046469.01.T01:intron
GCTGGAGTTGTCCTAAACCC+TGG 0.635850 8:+73764977 MsG0880046469.01.T01:CDS
TTCTGTGTGAAAGGCCTCCG+CGG 0.641840 8:+73766585 MsG0880046469.01.T01:exon
TGTCTATACATAAACCGAAG+AGG 0.645679 8:+73767335 MsG0880046469.01.T01:three_prime_UTR
TTGGATTGAAGTGGATGGTG+GGG 0.646043 8:+73765960 MsG0880046469.01.T01:CDS
GAAGAGGACTACATGCAAGA+TGG 0.647992 8:+73767351 MsG0880046469.01.T01:three_prime_UTR
AAATGGATCCGATACCGCGG+AGG 0.659044 8:-73766599 None:intergenic
AATCCTTGGATTGAAGTGGA+TGG 0.661026 8:+73765955 MsG0880046469.01.T01:CDS
CCAAAGGTAAATCTGTCACA+GGG 0.662632 8:-73764414 None:intergenic
TGATTTGAGAAGATTGTGCG+TGG 0.667135 8:+73765818 MsG0880046469.01.T01:CDS
CACCTTGTAAGCATTTGCTG+GGG 0.672494 8:-73765986 None:intergenic
GAATGATCTATTAACACCCA+TGG 0.672715 8:-73767267 None:intergenic
TTGCACTTAGCGGAGTACCA+GGG 0.677738 8:-73764994 None:intergenic
TGATTGTAGAACCAGATCAG+CGG 0.686244 8:+73764530 MsG0880046469.01.T01:CDS
TTCCAGAGAGAAATTGCAGG+TGG 0.690322 8:-73766998 None:intergenic
TTAAAATGGATCCGATACCG+CGG 0.731129 8:-73766602 None:intergenic
TTTGCATCCTAACGATAACG+AGG 0.747182 8:-73767308 None:intergenic
AAATATAAAATGATTCTACG+AGG 0.771789 8:-73763899 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATCTTATAATCTTATTA+TGG + Chr8:73765704-73765723 MsG0880046469.01.T01:intron 10.0%
!! TAAGATAATTTAAAGAAAAT+TGG - Chr8:73767385-73767404 None:intergenic 10.0%
!! TATTATATACTGAAAATAAA+CGG - Chr8:73765075-73765094 None:intergenic 10.0%
!!! TTTTTATTTTATTTTACTCT+TGG + Chr8:73766822-73766841 MsG0880046469.01.T01:intron 10.0%
!! AACAATAAAAATTTAACACA+TGG - Chr8:73765184-73765203 None:intergenic 15.0%
!! AATTATAAACAGAATAGAAA+AGG + Chr8:73765283-73765302 MsG0880046469.01.T01:intron 15.0%
!! ATCTCATAGAAAAAAAAAAA+CGG - Chr8:73765860-73765879 None:intergenic 15.0%
!! TTAATATTTAAGAGTTCTAT+TGG + Chr8:73766182-73766201 MsG0880046469.01.T01:intron 15.0%
!! TTTAAAAGTTAAATATGTCT+TGG + Chr8:73764836-73764855 MsG0880046469.01.T01:intron 15.0%
!!! AATATTAATGATGCTATTTA+TGG + Chr8:73765097-73765116 MsG0880046469.01.T01:intron 15.0%
!!! AATTAGCTTAATTTCAAATT+TGG + Chr8:73765559-73765578 MsG0880046469.01.T01:intron 15.0%
!!! ATTTTCAGTATTATGTTATT+TGG + Chr8:73766346-73766365 MsG0880046469.01.T01:intron 15.0%
!! AAAAACTGAAAAATTATAGC+TGG - Chr8:73767211-73767230 None:intergenic 20.0%
!! AAAGATTAAATTATGTGAGT+AGG + Chr8:73766453-73766472 MsG0880046469.01.T01:intron 20.0%
!! AAATATAAAATGATTCTACG+AGG - Chr8:73763902-73763921 None:intergenic 20.0%
!! AAATGAATTCAAAAAGGAAA+AGG - Chr8:73765043-73765062 None:intergenic 20.0%
!! AATTAATTTAGAAACCTTGA+TGG - Chr8:73766651-73766670 None:intergenic 20.0%
!! CAGAAAAAATGAATTCAAAA+AGG - Chr8:73765049-73765068 None:intergenic 20.0%
!! TAACAAAAAGATATTAAAGC+AGG - Chr8:73764033-73764052 None:intergenic 20.0%
!! TATCATAACATCTTTAATTC+AGG + Chr8:73767085-73767104 MsG0880046469.01.T01:three_prime_UTR 20.0%
!! TCATTCTAAATTATAAGTGA+TGG - Chr8:73766036-73766055 None:intergenic 20.0%
!! TGTATTTGACAATTATACAA+AGG - Chr8:73764762-73764781 None:intergenic 20.0%
!!! AATCAGAAATTTTCTTTACT+TGG - Chr8:73765803-73765822 None:intergenic 20.0%
!!! TGTGATTTTGACATTATATA+AGG + Chr8:73767174-73767193 MsG0880046469.01.T01:three_prime_UTR 20.0%
!!! TTACCAATATTTTTAGAACA+TGG - Chr8:73765255-73765274 None:intergenic 20.0%
!!! TTTTTTTTTCTATGAGATAG+TGG + Chr8:73765862-73765881 MsG0880046469.01.T01:intron 20.0%
! AATTCAATGAACAAAGTTTG+TGG - Chr8:73766269-73766288 None:intergenic 25.0%
! ACCAGAAACTAAAATGAATT+TGG - Chr8:73765354-73765373 None:intergenic 25.0%
! AGAAATATGCTAAAATGACT+TGG - Chr8:73764239-73764258 None:intergenic 25.0%
! ATAATCCCAACATAAAACAT+TGG + Chr8:73766122-73766141 MsG0880046469.01.T01:intron 25.0%
! CAGTAGTAAACAAATAATGA+AGG + Chr8:73766239-73766258 MsG0880046469.01.T01:intron 25.0%
! CATATTTGTGTATAATCTCT+TGG + Chr8:73767060-73767079 MsG0880046469.01.T01:three_prime_UTR 25.0%
! CTAAGTACTAACATTAGTAA+AGG + Chr8:73764862-73764881 MsG0880046469.01.T01:intron 25.0%
! CTGATTAAGTTTCTTGATTT+AGG + Chr8:73764934-73764953 MsG0880046469.01.T01:intron 25.0%
! CTTAATCAGATAAATTCAAC+AGG - Chr8:73764923-73764942 None:intergenic 25.0%
! GAAACTGAATGATATTAACT+TGG - Chr8:73767237-73767256 None:intergenic 25.0%
! TAATCCCAACATAAAACATT+GGG + Chr8:73766123-73766142 MsG0880046469.01.T01:intron 25.0%
! TACTATCAGATTGTAACTTT+CGG + Chr8:73767123-73767142 MsG0880046469.01.T01:three_prime_UTR 25.0%
! TATGTATAAAGATGAATACC+AGG - Chr8:73764447-73764466 None:intergenic 25.0%
! TTATAATCTTATTATGGTGC+TGG + Chr8:73765710-73765729 MsG0880046469.01.T01:intron 25.0%
! TTCACATTCGTTTCTTATAT+TGG - Chr8:73766731-73766750 None:intergenic 25.0%
! TTCCTTACATAATCTCTAAT+TGG + Chr8:73765911-73765930 MsG0880046469.01.T01:intron 25.0%
! TTTGTCCCAAATATTACTAT+TGG + Chr8:73764367-73764386 MsG0880046469.01.T01:CDS 25.0%
!! TATTCCTTTTATAGCTACAA+AGG - Chr8:73766539-73766558 None:intergenic 25.0%
!!! ACCAAATTCATTTTAGTTTC+TGG + Chr8:73765350-73765369 MsG0880046469.01.T01:intron 25.0%
!!! GAAGTTTCAGTTTTTTGATT+GGG + Chr8:73766674-73766693 MsG0880046469.01.T01:intron 25.0%
!!! GTTCCATGTTCTAAAAATAT+TGG + Chr8:73765249-73765268 MsG0880046469.01.T01:intron 25.0%
!!! TGAAGTTTCAGTTTTTTGAT+TGG + Chr8:73766673-73766692 MsG0880046469.01.T01:intron 25.0%
AACTCTTAGTTTACCGATAT+TGG - Chr8:73765152-73765171 None:intergenic 30.0%
AATTAGAATCAGATTGTCCT+CGG - Chr8:73766898-73766917 None:intergenic 30.0%
AATTTGAAAAGTCAAGCATC+TGG + Chr8:73765470-73765489 MsG0880046469.01.T01:intron 30.0%
ACAAATATGCATCACAACAA+AGG - Chr8:73767049-73767068 None:intergenic 30.0%
ACATATTCTATTGCACTTAG+CGG - Chr8:73765007-73765026 None:intergenic 30.0%
AGAGGTCCAATAGTAATATT+TGG - Chr8:73764376-73764395 None:intergenic 30.0%
ATACACATCCATATATGTGA+TGG - Chr8:73764814-73764833 None:intergenic 30.0%
ATCACATATATGGATGTGTA+TGG + Chr8:73764813-73764832 MsG0880046469.01.T01:intron 30.0%
ATCGTGCAATTAATCAAGTA+AGG + Chr8:73764626-73764645 MsG0880046469.01.T01:intron 30.0%
ATGTGAAAAATATTATCCCG+AGG + Chr8:73766878-73766897 MsG0880046469.01.T01:intron 30.0%
ATTATGTAAGGAATAAGAGC+CGG - Chr8:73765904-73765923 None:intergenic 30.0%
ATTCATGTTGATGTTATGGA+TGG + Chr8:73764340-73764359 MsG0880046469.01.T01:CDS 30.0%
CAAAGGCTTGAATATATGTT+TGG - Chr8:73764745-73764764 None:intergenic 30.0%
CATTCCTTTGTAGCTATAAA+AGG + Chr8:73766532-73766551 MsG0880046469.01.T01:intron 30.0%
GACATTCATAGAATATTCAG+TGG - Chr8:73765445-73765464 None:intergenic 30.0%
GACCAATTAGAGATTATGTA+AGG - Chr8:73765916-73765935 None:intergenic 30.0%
GAGGTCCAATAGTAATATTT+GGG - Chr8:73764375-73764394 None:intergenic 30.0%
GATTAAATTATGTGAGTAGG+AGG + Chr8:73766456-73766475 MsG0880046469.01.T01:intron 30.0%
GCAATAGAATATGTTCTTGA+TGG + Chr8:73765013-73765032 MsG0880046469.01.T01:CDS 30.0%
GCAGCTTACATTGTTTAAAA+TGG - Chr8:73766619-73766638 None:intergenic 30.0%
TGTGATTCTGATATTTGTCA+TGG + Chr8:73766505-73766524 MsG0880046469.01.T01:intron 30.0%
TTAATTATGTCTGTAAACCC+TGG + Chr8:73765750-73765769 MsG0880046469.01.T01:CDS 30.0%
TTGATTTAGGTAAAAAGCCT+GGG + Chr8:73764947-73764966 MsG0880046469.01.T01:intron 30.0%
TTGGATTCATGTTGATGTTA+TGG + Chr8:73764336-73764355 MsG0880046469.01.T01:CDS 30.0%
! AATGATGCTATTTATGGCTT+AGG + Chr8:73765103-73765122 MsG0880046469.01.T01:intron 30.0%
! CAGAATAGAAAAGGTTTGTT+TGG + Chr8:73765292-73765311 MsG0880046469.01.T01:intron 30.0%
! CTTTTATAGCTACAAAGGAA+TGG - Chr8:73766534-73766553 None:intergenic 30.0%
! GCTTGACTTTTCAAATTTTG+TGG - Chr8:73765467-73765486 None:intergenic 30.0%
! GTTTCCCAATGTTTTATGTT+GGG - Chr8:73766130-73766149 None:intergenic 30.0%
! TCACAAACTTGTTTACAGTA+TGG - Chr8:73767159-73767178 None:intergenic 30.0%
! TCAGTATTATGTTATTTGGC+AGG + Chr8:73766350-73766369 MsG0880046469.01.T01:intron 30.0%
! TGTTTCCCAATGTTTTATGT+TGG - Chr8:73766131-73766150 None:intergenic 30.0%
! TTAAACTTGCAACTCGATTT+TGG + Chr8:73766773-73766792 MsG0880046469.01.T01:intron 30.0%
!!! CTTTTTGTTATTGTGAACTC+AGG + Chr8:73764043-73764062 MsG0880046469.01.T01:intron 30.0%
AACCTGACAGATAATGTTCA+TGG + Chr8:73766943-73766962 MsG0880046469.01.T01:intron 35.0%
AAGCCTTCTCTAACAAATTC+GGG - Chr8:73763986-73764005 None:intergenic 35.0%
ACCTTGACTTTCATCATCAT+AGG - Chr8:73765589-73765608 None:intergenic 35.0%
AGAACTCCAACAGTTATGAT+TGG - Chr8:73764270-73764289 None:intergenic 35.0%
ATATTGTCCTCGTTATCGTT+AGG + Chr8:73767301-73767320 MsG0880046469.01.T01:three_prime_UTR 35.0%
ATTAGAATCAGATTGTCCTC+GGG - Chr8:73766897-73766916 None:intergenic 35.0%
ATTAGACCCTACAACTCAAA+CGG - Chr8:73766328-73766347 None:intergenic 35.0%
ATTCAACAGGAAACTGAAAC+TGG - Chr8:73764910-73764929 None:intergenic 35.0%
CAAGCCTTCTCTAACAAATT+CGG - Chr8:73763987-73764006 None:intergenic 35.0%
CCTTGACTTTCATCATCATA+GGG - Chr8:73765588-73765607 None:intergenic 35.0%
CTTGACTTTCATCATCATAG+GGG - Chr8:73765587-73765606 None:intergenic 35.0%
CTTGATTTAGGTAAAAAGCC+TGG + Chr8:73764946-73764965 MsG0880046469.01.T01:intron 35.0%
GAATGATCTATTAACACCCA+TGG - Chr8:73767270-73767289 None:intergenic 35.0%
GATAACGAGGACAATATAAG+AGG - Chr8:73767298-73767317 None:intergenic 35.0%
GATTAATTGCACGATGCAAA+TGG - Chr8:73764621-73764640 None:intergenic 35.0%
GCTTATGTGGTTACCAATAT+CGG + Chr8:73765136-73765155 MsG0880046469.01.T01:CDS 35.0%
GTATAAAGATGAATACCAGG+TGG - Chr8:73764444-73764463 None:intergenic 35.0%
TAAAATGATTCTACGAGGAG+TGG - Chr8:73763897-73763916 None:intergenic 35.0%
TAATTCCAGAGAGAAATTGC+AGG - Chr8:73767004-73767023 None:intergenic 35.0%
TACGTGACATAGAAAACCAT+AGG + Chr8:73766300-73766319 MsG0880046469.01.T01:intron 35.0%
TATTACTATTGGACCTCTTG+TGG + Chr8:73764378-73764397 MsG0880046469.01.T01:CDS 35.0%
TGCAGTAACCATCACATATA+TGG + Chr8:73764803-73764822 MsG0880046469.01.T01:intron 35.0%
TGGTAACCACATAAGCATAT+GGG - Chr8:73765132-73765151 None:intergenic 35.0%
TGTCTATACATAAACCGAAG+AGG + Chr8:73767335-73767354 MsG0880046469.01.T01:three_prime_UTR 35.0%
TTATGTAAGGAATAAGAGCC+GGG - Chr8:73765903-73765922 None:intergenic 35.0%
TTGGAGTTCTTGTGTTATCT+TGG + Chr8:73764280-73764299 MsG0880046469.01.T01:intron 35.0%
TTGGGATTATCCTCTTGAAA+AGG - Chr8:73766112-73766131 None:intergenic 35.0%
TTGTCACCAATCATAACTGT+TGG + Chr8:73764261-73764280 MsG0880046469.01.T01:intron 35.0%
! CAAACTTGTTTACAGTATGG+TGG - Chr8:73767156-73767175 None:intergenic 35.0%
! TTCTCCCAATTTTGCAAAGT+TGG - Chr8:73764157-73764176 None:intergenic 35.0%
! TTGGTAACCACATAAGCATA+TGG - Chr8:73765133-73765152 None:intergenic 35.0%
!! AATTTGTTAGAGAAGGCTTG+TGG + Chr8:73763987-73764006 MsG0880046469.01.T01:intron 35.0%
!! AGTTTCTGGTGAATTACACT+TGG + Chr8:73765364-73765383 MsG0880046469.01.T01:intron 35.0%
!! ATCACAACAAAGGCATTACT+TGG - Chr8:73767039-73767058 None:intergenic 35.0%
!! TCAATGATTGCCTTTTCAAG+AGG + Chr8:73766099-73766118 MsG0880046469.01.T01:intron 35.0%
!! TGAGCAAAAAAAGAAGCACT+TGG - Chr8:73766208-73766227 None:intergenic 35.0%
!! TTTGTTATTGTGAACTCAGG+AGG + Chr8:73764046-73764065 MsG0880046469.01.T01:intron 35.0%
AAGTTGGCGGAAAGAATAGA+TGG - Chr8:73764141-73764160 None:intergenic 40.0%
AATCCTTGGATTGAAGTGGA+TGG + Chr8:73765955-73765974 MsG0880046469.01.T01:CDS 40.0%
AGATAATGTTCATGGTCAGC+AGG + Chr8:73766951-73766970 MsG0880046469.01.T01:intron 40.0%
AGGTTTCCCATATGCTTATG+TGG + Chr8:73765123-73765142 MsG0880046469.01.T01:intron 40.0%
ATCTTGCATGTAGTCCTCTT+CGG - Chr8:73767352-73767371 None:intergenic 40.0%
CAGGAGGAAAATTTCAACTG+TGG + Chr8:73764062-73764081 MsG0880046469.01.T01:intron 40.0%
CCAAAGGTAAATCTGTCACA+GGG - Chr8:73764417-73764436 None:intergenic 40.0%
CTAGGTAAAAGCAGTAGAGT+TGG + Chr8:73764303-73764322 MsG0880046469.01.T01:intron 40.0%
CTGCATTCTTGACAAGATTC+TGG - Chr8:73764788-73764807 None:intergenic 40.0%
CTTTGCAAAATTGGGAGAAC+AGG + Chr8:73764158-73764177 MsG0880046469.01.T01:CDS 40.0%
GACCATGAACATTATCTGTC+AGG - Chr8:73766948-73766967 None:intergenic 40.0%
GGAGCTAAAGATTATGCTGA+AGG + Chr8:73766420-73766439 MsG0880046469.01.T01:CDS 40.0%
GTTCTTGTGTTATCTTGGCT+AGG + Chr8:73764285-73764304 MsG0880046469.01.T01:intron 40.0%
TACAACTCAAACGGATCCTA+TGG - Chr8:73766319-73766338 None:intergenic 40.0%
TATGTAAGGAATAAGAGCCG+GGG - Chr8:73765902-73765921 None:intergenic 40.0%
TCCAAAGGTAAATCTGTCAC+AGG - Chr8:73764418-73764437 None:intergenic 40.0%
TCCGCCAACTTTGCAAAATT+GGG + Chr8:73764150-73764169 MsG0880046469.01.T01:CDS 40.0%
TGATTGTAGAACCAGATCAG+CGG + Chr8:73764530-73764549 MsG0880046469.01.T01:CDS 40.0%
TGATTTGAGAAGATTGTGCG+TGG + Chr8:73765818-73765837 MsG0880046469.01.T01:CDS 40.0%
TGTGAATCCTTGGATTGAAG+TGG + Chr8:73765951-73765970 MsG0880046469.01.T01:CDS 40.0%
TTAAAATGGATCCGATACCG+CGG - Chr8:73766605-73766624 None:intergenic 40.0%
TTCCGCCAACTTTGCAAAAT+TGG + Chr8:73764149-73764168 MsG0880046469.01.T01:CDS 40.0%
TTTGCATCCTAACGATAACG+AGG - Chr8:73767311-73767330 None:intergenic 40.0%
! AATTGGTCTCTCTCTCTCTA+GGG + Chr8:73765928-73765947 MsG0880046469.01.T01:intron 40.0%
! CCCTATGATGATGAAAGTCA+AGG + Chr8:73765585-73765604 MsG0880046469.01.T01:intron 40.0%
! TAATTGGTCTCTCTCTCTCT+AGG + Chr8:73765927-73765946 MsG0880046469.01.T01:intron 40.0%
! TATTAACACCCATGGTGCTA+GGG - Chr8:73767262-73767281 None:intergenic 40.0%
! TCCCAATTTTGCAAAGTTGG+CGG - Chr8:73764154-73764173 None:intergenic 40.0%
! TGTTATTTGGCAGGTGATTG+AGG + Chr8:73766359-73766378 MsG0880046469.01.T01:intron 40.0%
!! ACACCCGAATTTGTTAGAGA+AGG + Chr8:73763980-73763999 MsG0880046469.01.T01:intron 40.0%
!! ATAGGATCCGTTTGAGTTGT+AGG + Chr8:73766318-73766337 MsG0880046469.01.T01:intron 40.0%
!! TAGGATCCGTTTGAGTTGTA+GGG + Chr8:73766319-73766338 MsG0880046469.01.T01:intron 40.0%
AATACCAGGTGGACATCCAA+AGG - Chr8:73764433-73764452 None:intergenic 45.0%
ACAGGAAACTGAAACTGGAG+TGG - Chr8:73764905-73764924 None:intergenic 45.0%
AGCACCTTGTAAGCATTTGC+TGG - Chr8:73765991-73766010 None:intergenic 45.0%
AGTTTCATCCCTAGCACCAT+GGG + Chr8:73767251-73767270 MsG0880046469.01.T01:three_prime_UTR 45.0%
ATGTAAGGAATAAGAGCCGG+GGG - Chr8:73765901-73765920 None:intergenic 45.0%
ATGTCTGTAAACCCTGGCTT+TGG + Chr8:73765756-73765775 MsG0880046469.01.T01:CDS 45.0%
CCCTGTGACAGATTTACCTT+TGG + Chr8:73764414-73764433 MsG0880046469.01.T01:CDS 45.0%
CTATTAACACCCATGGTGCT+AGG - Chr8:73767263-73767282 None:intergenic 45.0%
CTTGGATTGAAGTGGATGGT+GGG + Chr8:73765959-73765978 MsG0880046469.01.T01:CDS 45.0%
GAAGAGGACTACATGCAAGA+TGG + Chr8:73767351-73767370 MsG0880046469.01.T01:three_prime_UTR 45.0%
GATAGCAAGCCATGCCTAAT+TGG - Chr8:73766977-73766996 None:intergenic 45.0%
GATTGTAGAACCAGATCAGC+GGG + Chr8:73764531-73764550 MsG0880046469.01.T01:CDS 45.0%
GCACCTTGTAAGCATTTGCT+GGG - Chr8:73765990-73766009 None:intergenic 45.0%
GCTCCTGCTTTGATGAAATC+TGG - Chr8:73764559-73764578 None:intergenic 45.0%
GTAAAAGCAGTAGAGTTGGC+TGG + Chr8:73764307-73764326 MsG0880046469.01.T01:CDS 45.0%
GTGCCAGATTTCATCAAAGC+AGG + Chr8:73764553-73764572 MsG0880046469.01.T01:CDS 45.0%
TACCCCAGCAAATGCTTACA+AGG + Chr8:73765984-73766003 MsG0880046469.01.T01:CDS 45.0%
TGAGCCAGTTTCTGTGTGAA+AGG + Chr8:73766576-73766595 MsG0880046469.01.T01:exon 45.0%
TGCACGATGCAAATGGATAG+TGG - Chr8:73764614-73764633 None:intergenic 45.0%
TGCGTGAAAAAATGTGCTGC+TGG + Chr8:73766846-73766865 MsG0880046469.01.T01:intron 45.0%
TTCCAGAGAGAAATTGCAGG+TGG - Chr8:73767001-73767020 None:intergenic 45.0%
TTGGATTGAAGTGGATGGTG+GGG + Chr8:73765960-73765979 MsG0880046469.01.T01:CDS 45.0%
TTTACCTTTGGATGTCCACC+TGG + Chr8:73764426-73764445 MsG0880046469.01.T01:CDS 45.0%
! CACCTTGTAAGCATTTGCTG+GGG - Chr8:73765989-73766008 None:intergenic 45.0%
! CTTGGCTCTCGATAAAACTC+TGG - Chr8:73765785-73765804 None:intergenic 45.0%
! GGAGGCATACATTGCAATAG+TGG + Chr8:73766474-73766493 MsG0880046469.01.T01:intron 45.0%
! TAGAGTTGGCTGGTTGTGAT+TGG + Chr8:73764317-73764336 MsG0880046469.01.T01:CDS 45.0%
! TGGATTTTGTGTTTTCCCCC+CGG + Chr8:73765882-73765901 MsG0880046469.01.T01:intron 45.0%
! TTTCACACAGAAACTGGCTC+AGG - Chr8:73766577-73766596 None:intergenic 45.0%
!! TCTTATTATGGTGCTGGCAG+TGG + Chr8:73765716-73765735 MsG0880046469.01.T01:intron 45.0%
AAAAGCCTGGGAGCTAAAGC+TGG + Chr8:73764959-73764978 MsG0880046469.01.T01:CDS 50.0%
AGATTGTGCGTGGAGAAGGT+AGG + Chr8:73765828-73765847 MsG0880046469.01.T01:intron 50.0%
ATTTGGCAGGTGATTGAGGC+TGG + Chr8:73766363-73766382 MsG0880046469.01.T01:intron 50.0%
CACCACCTGCAATTTCTCTC+TGG + Chr8:73766996-73767015 MsG0880046469.01.T01:three_prime_UTR 50.0%
CAGTTTCATCCCTAGCACCA+TGG + Chr8:73767250-73767269 MsG0880046469.01.T01:three_prime_UTR 50.0%
CCACCATCCACTTCAATCCA+AGG - Chr8:73765961-73765980 None:intergenic 50.0%
CCTTGGATTGAAGTGGATGG+TGG + Chr8:73765958-73765977 MsG0880046469.01.T01:CDS 50.0%
CGCAATGCATCAACCACAAG+AGG - Chr8:73764394-73764413 None:intergenic 50.0%
GAGAAGATTGTGCGTGGAGA+AGG + Chr8:73765824-73765843 MsG0880046469.01.T01:CDS 50.0%
GAGGCCTTTCACACAGAAAC+TGG - Chr8:73766583-73766602 None:intergenic 50.0%
GCTGCATGTTTGCACCATCA+AGG + Chr8:73766634-73766653 MsG0880046469.01.T01:intron 50.0%
TCATGGTCAGCAGGCCAATT+AGG + Chr8:73766960-73766979 MsG0880046469.01.T01:three_prime_UTR 50.0%
TGTAAGGAATAAGAGCCGGG+GGG - Chr8:73765900-73765919 None:intergenic 50.0%
! ATTGCACTTAGCGGAGTACC+AGG - Chr8:73764998-73765017 None:intergenic 50.0%
! TTAGCGGAGTACCAGGGTTT+AGG - Chr8:73764991-73765010 None:intergenic 50.0%
! TTGCACTTAGCGGAGTACCA+GGG - Chr8:73764997-73765016 None:intergenic 50.0%
!! CTCTCTAGGGTGTGAATCCT+TGG + Chr8:73765941-73765960 MsG0880046469.01.T01:intron 50.0%
!! GTTGCTGGTTCTGCTGTGTT+TGG + Chr8:73766399-73766418 MsG0880046469.01.T01:CDS 50.0%
!! TCTGTAAACCCTGGCTTTGG+TGG + Chr8:73765759-73765778 MsG0880046469.01.T01:CDS 50.0%
AAACTCTGGCCACCAAAGCC+AGG - Chr8:73765771-73765790 None:intergenic 55.0%
AAATCTGGCACCCGCTGATC+TGG - Chr8:73764544-73764563 None:intergenic 55.0%
AAATGGATCCGATACCGCGG+AGG - Chr8:73766602-73766621 None:intergenic 55.0%
AACTCTGGCCACCAAAGCCA+GGG - Chr8:73765770-73765789 None:intergenic 55.0%
GCTGGAGTTGTCCTAAACCC+TGG + Chr8:73764977-73764996 MsG0880046469.01.T01:CDS 55.0%
GTCAGCAGGCCAATTAGGCA+TGG + Chr8:73766965-73766984 MsG0880046469.01.T01:three_prime_UTR 55.0%
TGAGGCTGGAGCTAATGCAC+TGG + Chr8:73766377-73766396 MsG0880046469.01.T01:CDS 55.0%
TGTGTGTGTGTGCGTGTGCA+AGG - Chr8:73763963-73763982 None:intergenic 55.0%
TTCTGTGTGAAAGGCCTCCG+CGG + Chr8:73766585-73766604 MsG0880046469.01.T01:exon 55.0%
! CAACTCCAGCTTTAGCTCCC+AGG - Chr8:73764967-73764986 None:intergenic 55.0%
!! GGAGCTAATGCACTGGTTGC+TGG + Chr8:73766384-73766403 MsG0880046469.01.T01:CDS 55.0%
GTGAAAGGCCTCCGCGGTAT+CGG + Chr8:73766591-73766610 MsG0880046469.01.T01:exon 60.0%
!! GGTGCTGGCAGTGGTTGACT+TGG + Chr8:73765725-73765744 MsG0880046469.01.T01:intron 60.0%
Chromosome Type Strat End Strand Name
Chr8 gene 73763878 73767418 73763878 ID=MsG0880046469.01;Name=MsG0880046469.01
Chr8 mRNA 73763878 73767418 73763878 ID=MsG0880046469.01.T01;Parent=MsG0880046469.01;Name=MsG0880046469.01.T01;_AED=0.36;_eAED=0.40;_QI=0|0.7|0.81|1|0.9|0.81|11|501|271
Chr8 exon 73763878 73763924 73763878 ID=MsG0880046469.01.T01:exon:5784;Parent=MsG0880046469.01.T01
Chr8 exon 73764065 73764179 73764065 ID=MsG0880046469.01.T01:exon:5785;Parent=MsG0880046469.01.T01
Chr8 exon 73764307 73764447 73764307 ID=MsG0880046469.01.T01:exon:5786;Parent=MsG0880046469.01.T01
Chr8 exon 73764529 73764642 73764529 ID=MsG0880046469.01.T01:exon:5787;Parent=MsG0880046469.01.T01
Chr8 exon 73764956 73765034 73764956 ID=MsG0880046469.01.T01:exon:5788;Parent=MsG0880046469.01.T01
Chr8 exon 73765125 73765157 73765125 ID=MsG0880046469.01.T01:exon:5789;Parent=MsG0880046469.01.T01
Chr8 exon 73765736 73765845 73765736 ID=MsG0880046469.01.T01:exon:5790;Parent=MsG0880046469.01.T01
Chr8 exon 73765949 73766005 73765949 ID=MsG0880046469.01.T01:exon:5791;Parent=MsG0880046469.01.T01
Chr8 exon 73766372 73766441 73766372 ID=MsG0880046469.01.T01:exon:5792;Parent=MsG0880046469.01.T01
Chr8 exon 73766545 73766629 73766545 ID=MsG0880046469.01.T01:exon:5793;Parent=MsG0880046469.01.T01
Chr8 exon 73766953 73767418 73766953 ID=MsG0880046469.01.T01:exon:5794;Parent=MsG0880046469.01.T01
Chr8 CDS 73763878 73763924 73763878 ID=MsG0880046469.01.T01:cds;Parent=MsG0880046469.01.T01
Chr8 CDS 73764065 73764179 73764065 ID=MsG0880046469.01.T01:cds;Parent=MsG0880046469.01.T01
Chr8 CDS 73764307 73764447 73764307 ID=MsG0880046469.01.T01:cds;Parent=MsG0880046469.01.T01
Chr8 CDS 73764529 73764642 73764529 ID=MsG0880046469.01.T01:cds;Parent=MsG0880046469.01.T01
Chr8 CDS 73764956 73765034 73764956 ID=MsG0880046469.01.T01:cds;Parent=MsG0880046469.01.T01
Chr8 CDS 73765125 73765157 73765125 ID=MsG0880046469.01.T01:cds;Parent=MsG0880046469.01.T01
Chr8 CDS 73765736 73765845 73765736 ID=MsG0880046469.01.T01:cds;Parent=MsG0880046469.01.T01
Chr8 CDS 73765949 73766005 73765949 ID=MsG0880046469.01.T01:cds;Parent=MsG0880046469.01.T01
Chr8 CDS 73766372 73766441 73766372 ID=MsG0880046469.01.T01:cds;Parent=MsG0880046469.01.T01
Chr8 CDS 73766545 73766594 73766545 ID=MsG0880046469.01.T01:cds;Parent=MsG0880046469.01.T01
Chr8 three_prime_UTR 73766595 73766629 73766595 ID=MsG0880046469.01.T01:three_prime_utr;Parent=MsG0880046469.01.T01
Chr8 three_prime_UTR 73766953 73767418 73766953 ID=MsG0880046469.01.T01:three_prime_utr;Parent=MsG0880046469.01.T01
Gene Sequence

>MsG0880046469.01.T01

ATGTTGAATTTTGAAACCACTCCTCGTAGAATCATTTTATATTTACTGAGGAAAATTTCAACTGTGGTTAAAGCTTCATCTCGTGTTGACAAGTTTTCAAAAAGTGATATCATTGTTTCTCCATCTATTCTTTCCGCCAACTTTGCAAAATTGGGAGAACAGGTAAAAGCAGTAGAGTTGGCTGGTTGTGATTGGATTCATGTTGATGTTATGGATGGTCGCTTTGTCCCAAATATTACTATTGGACCTCTTGTGGTTGATGCATTGCGCCCTGTGACAGATTTACCTTTGGATGTCCACCTGATGATTGTAGAACCAGATCAGCGGGTGCCAGATTTCATCAAAGCAGGAGCTGACATTGTCAGTATTCATTGCGAACAATCTTCCACTATCCATTTGCATCGTGCAATTAATCAAGTAAAAAGCCTGGGAGCTAAAGCTGGAGTTGTCCTAAACCCTGGTACTCCGCTAAGTGCAATAGAATATGTTCTTGATGGTTTCCCATATGCTTATGTGGTTACCAATATCGTGGTTGACTTGGTCTTAATTATGTCTGTAAACCCTGGCTTTGGTGGCCAGAGTTTTATCGAGAGCCAAGTAAAGAAAATTTCTGATTTGAGAAGATTGTGCGTGGAGAAGGGTGTGAATCCTTGGATTGAAGTGGATGGTGGGGTTACCCCAGCAAATGCTTACAAGGTGATTGAGGCTGGAGCTAATGCACTGGTTGCTGGTTCTGCTGTGTTTGGAGCTAAAGATTATGCTGAAGCTATAAAAGGAATAAAAGCTAGCAAAAGACCTGAGCCAGTTTCTGTGTGA

Protein sequence

>MsG0880046469.01.T01

MLNFETTPRRIILYLLRKISTVVKASSRVDKFSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPDQRVPDFIKAGADIVSIHCEQSSTIHLHRAINQVKSLGAKAGVVLNPGTPLSAIEYVLDGFPYAYVVTNIVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRLCVEKGVNPWIEVDGGVTPANAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKASKRPEPVSV*