Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016528.01.T01 | XP_003602256.2 | 85.911 | 291 | 14 | 5 | 1 | 287 | 1 | 268 | 1.17E-145 | 431 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016528.01.T01 | Q9FK07 | 48.013 | 302 | 98 | 9 | 4 | 287 | 2 | 262 | 8.00E-62 | 208 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016528.01.T01 | G7J7E6 | 85.911 | 291 | 14 | 5 | 1 | 287 | 1 | 268 | 5.58e-146 | 431 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048986.01 | MsG0380016528.01 | 0.806598 | 7.611461e-50 | 4.148096e-47 |
| MsG0080048992.01 | MsG0380016528.01 | 0.837606 | 4.707452e-57 | 6.146855e-54 |
| MsG0080049018.01 | MsG0380016528.01 | 0.808249 | 3.398556e-50 | 1.933675e-47 |
| MsG0080049043.01 | MsG0380016528.01 | -0.820371 | 7.107734e-53 | 5.613636e-50 |
| MsG0180000719.01 | MsG0380016528.01 | 0.848256 | 6.883965e-60 | 1.255782e-56 |
| MsG0180001054.01 | MsG0380016528.01 | 0.816885 | 4.391425e-52 | 3.149959e-49 |
| MsG0180004731.01 | MsG0380016528.01 | 0.809824 | 1.563106e-50 | 9.271989e-48 |
| MsG0180005223.01 | MsG0380016528.01 | 0.835745 | 1.402838e-56 | 1.731365e-53 |
| MsG0180005242.01 | MsG0380016528.01 | 0.818409 | 1.990043e-52 | 1.488556e-49 |
| MsG0180005308.01 | MsG0380016528.01 | 0.812098 | 5.029935e-51 | 3.168868e-48 |
| MsG0180005767.01 | MsG0380016528.01 | 0.837011 | 6.683844e-57 | 8.569829e-54 |
| MsG0180005784.01 | MsG0380016528.01 | 0.816773 | 4.651736e-52 | 3.326543e-49 |
| MsG0180005791.01 | MsG0380016528.01 | 0.800107 | 1.683365e-48 | 7.772487e-46 |
| MsG0180005847.01 | MsG0380016528.01 | 0.872508 | 3.014403e-67 | 1.264789e-63 |
| MsG0180006063.01 | MsG0380016528.01 | 0.867616 | 1.200195e-65 | 4.216823e-62 |
| MsG0280011241.01 | MsG0380016528.01 | 0.863213 | 2.922794e-64 | 8.792483e-61 |
| MsG0380016089.01 | MsG0380016528.01 | 0.843836 | 1.096546e-58 | 1.737253e-55 |
| MsG0380016096.01 | MsG0380016528.01 | 0.824943 | 6.136854e-54 | 5.515654e-51 |
| MsG0380016528.01 | MsG0380016718.01 | 0.816136 | 6.461578e-52 | 4.540952e-49 |
| MsG0380016528.01 | MsG0380016889.01 | 0.803273 | 3.771721e-49 | 1.887308e-46 |
| MsG0380016528.01 | MsG0380017155.01 | -0.828480 | 8.784579e-55 | 8.742264e-52 |
| MsG0380016528.01 | MsG0480018088.01 | 0.831502 | 1.609511e-55 | 1.749956e-52 |
| MsG0380016528.01 | MsG0480023152.01 | 0.807287 | 5.442048e-50 | 3.019307e-47 |
| MsG0380016528.01 | MsG0480023242.01 | 0.860625 | 1.813273e-63 | 4.988215e-60 |
| MsG0380016528.01 | MsG0580024269.01 | 0.928185 | 4.129130e-92 | 2.145606e-87 |
| MsG0380016528.01 | MsG0580029792.01 | 0.834564 | 2.786510e-56 | 3.319489e-53 |
| MsG0380016528.01 | MsG0680031789.01 | 0.880034 | 7.649856e-70 | 4.244854e-66 |
| MsG0380016528.01 | MsG0780037458.01 | 0.813372 | 2.645950e-51 | 1.724900e-48 |
| MsG0380016528.01 | MsG0780037669.01 | 0.821959 | 3.058799e-53 | 2.525364e-50 |
| MsG0380016528.01 | MsG0780039382.01 | 0.817426 | 3.317529e-52 | 2.415316e-49 |
| MsG0380016528.01 | MsG0780041056.01 | 0.850445 | 1.690898e-60 | 3.312993e-57 |
| MsG0380016528.01 | MsG0780041362.01 | 0.812157 | 4.882620e-51 | 3.081065e-48 |
| MsG0380016528.01 | MsG0780041531.01 | 0.853074 | 3.038702e-61 | 6.485415e-58 |
| MsG0380016528.01 | MsG0880045755.01 | 0.815522 | 8.853701e-52 | 6.118507e-49 |
| MsG0380016528.01 | MsG0880046105.01 | 0.801248 | 9.849555e-49 | 4.681289e-46 |
| MsG0380016528.01 | MsG0880046630.01 | 0.808642 | 2.801707e-50 | 1.610420e-47 |
| MsG0380016528.01 | MsG0880047251.01 | 0.837162 | 6.114999e-57 | 7.876005e-54 |
| MsG0380016528.01 | MsG0880047307.01 | 0.802283 | 6.038319e-49 | 2.946311e-46 |
| MsG0280007444.01 | MsG0380016528.01 | 0.802634 | 5.110968e-49 | 2.516124e-46 |
| MsG0280008820.01 | MsG0380016528.01 | 0.811685 | 6.187665e-51 | 3.855010e-48 |
| MsG0280009008.01 | MsG0380016528.01 | 0.820890 | 5.399950e-53 | 4.326835e-50 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016528.01.T01 | MTR_3g091550 | 85.911 | 291 | 14 | 5 | 1 | 287 | 1 | 268 | 1.41e-149 | 431 |
| MsG0380016528.01.T01 | MTR_6g059910 | 66.912 | 136 | 22 | 3 | 152 | 287 | 237 | 349 | 3.62e-47 | 167 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016528.01.T01 | AT5G53350 | 48.013 | 302 | 98 | 9 | 4 | 287 | 2 | 262 | 8.16e-63 | 208 |
| MsG0380016528.01.T01 | AT1G33360 | 64.706 | 136 | 20 | 3 | 152 | 287 | 240 | 347 | 2.62e-45 | 162 |
| MsG0380016528.01.T01 | AT5G49840 | 60.465 | 129 | 27 | 3 | 161 | 288 | 197 | 302 | 8.36e-38 | 141 |
| MsG0380016528.01.T01 | AT5G49840 | 60.156 | 128 | 27 | 3 | 161 | 287 | 197 | 301 | 1.05e-37 | 139 |
| MsG0380016528.01.T01 | AT5G49840 | 60.156 | 128 | 27 | 3 | 161 | 287 | 197 | 301 | 2.52e-37 | 139 |
| MsG0380016528.01.T01 | AT5G49840 | 60.156 | 128 | 27 | 3 | 161 | 287 | 197 | 301 | 2.76e-37 | 139 |
Find 99 sgRNAs with CRISPR-Local
Find 121 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGTTGGGGTGGGTCTAATA+TGG | 0.227398 | 3:-84735148 | MsG0380016528.01.T01:CDS |
| CTTATGATGTAACCGCTTAT+AGG | 0.235987 | 3:-84735314 | MsG0380016528.01.T01:CDS |
| GGGCTTGATAAACATGTAAT+TGG | 0.255789 | 3:-84735090 | MsG0380016528.01.T01:CDS |
| ACATCATAAGGAACATGATT+AGG | 0.297555 | 3:+84735327 | None:intergenic |
| GAAAAGCAATATTCTTCTAA+TGG | 0.301012 | 3:-84734799 | MsG0380016528.01.T01:CDS |
| TTATGATGTAACCGCTTATA+GGG | 0.308651 | 3:-84735313 | MsG0380016528.01.T01:CDS |
| AAAAGCAATATTCTTCTAAT+GGG | 0.315637 | 3:-84734798 | MsG0380016528.01.T01:CDS |
| TGCTGCTAGCTCTGGTGATT+CGG | 0.320914 | 3:-84735187 | MsG0380016528.01.T01:CDS |
| GCTGCTAGCTCTGGTGATTC+GGG | 0.323264 | 3:-84735186 | MsG0380016528.01.T01:CDS |
| CATCATAAGGAACATGATTA+GGG | 0.324327 | 3:+84735328 | None:intergenic |
| TACAAACCTAGCCAAGGTTT+TGG | 0.330534 | 3:+84734418 | None:intergenic |
| TTGGAAGTGGAGGCAGTAGA+AGG | 0.343348 | 3:+84735378 | None:intergenic |
| GTCTCTGGTGGTGGTGGAGG+TGG | 0.352916 | 3:-84735213 | MsG0380016528.01.T01:CDS |
| TGCCACAGATAGCACCTTCT+TGG | 0.354117 | 3:+84735056 | None:intergenic |
| TTGTTGATCCTCCTGAAGTT+TGG | 0.355689 | 3:-84735275 | MsG0380016528.01.T01:CDS |
| TCTGGTGGTGGTGGAGGTGG+TGG | 0.358326 | 3:-84735210 | MsG0380016528.01.T01:CDS |
| TAGTATTACTACTACCCTTA+TGG | 0.379971 | 3:+84735403 | None:intergenic |
| TGAAGGAAGTGAAGTGATAA+GGG | 0.393456 | 3:+84735457 | None:intergenic |
| TGTTGGGGTGGGTCTAATAT+GGG | 0.407701 | 3:-84735147 | MsG0380016528.01.T01:CDS |
| GGTGGTGGTGCTGCTAGCTC+TGG | 0.418507 | 3:-84735195 | MsG0380016528.01.T01:CDS |
| TTTGATGTTGTTTCAAGGAC+AGG | 0.422533 | 3:-84734455 | MsG0380016528.01.T01:CDS |
| GGCCAACAGGATCAGGTAAA+CGG | 0.426416 | 3:-84734776 | MsG0380016528.01.T01:CDS |
| GATCCTCCTGAAGTTTGGTC+TGG | 0.439271 | 3:-84735270 | MsG0380016528.01.T01:CDS |
| ATTCGGGGAATTCGAAAGAT+TGG | 0.439295 | 3:-84735170 | MsG0380016528.01.T01:CDS |
| ATTCTTCTAATGGGGCCAAC+AGG | 0.443100 | 3:-84734789 | MsG0380016528.01.T01:CDS |
| GATGTCTCTGGTGGTGGTGG+AGG | 0.443928 | 3:-84735216 | MsG0380016528.01.T01:CDS |
| TTGAAGGAAGTGAAGTGATA+AGG | 0.445450 | 3:+84735456 | None:intergenic |
| CTAATGGGGCCAACAGGATC+AGG | 0.446453 | 3:-84734783 | MsG0380016528.01.T01:CDS |
| ATCTGGAATGTTAGGCATGC+AGG | 0.446474 | 3:-84734882 | MsG0380016528.01.T01:intron |
| GGTGGAATTGTTGTTCGTCC+TGG | 0.450696 | 3:-84735246 | MsG0380016528.01.T01:CDS |
| CCACCACCAGACCAAACTTC+AGG | 0.451100 | 3:+84735264 | None:intergenic |
| CGGCGGCGATTTCATCCATA+AGG | 0.452075 | 3:-84735418 | MsG0380016528.01.T01:CDS |
| TGATAAGGGGTGTTGATTAA+CGG | 0.452244 | 3:+84735471 | None:intergenic |
| CTCCGAAGGAGATTTGTAAA+GGG | 0.461420 | 3:-84735110 | MsG0380016528.01.T01:CDS |
| CTATAAGCGGTTACATCATA+AGG | 0.461499 | 3:+84735315 | None:intergenic |
| CCTGAAGTTTGGTCTGGTGG+TGG | 0.461621 | 3:-84735264 | MsG0380016528.01.T01:CDS |
| GAATTCGAAAGATTGGTGTT+GGG | 0.463989 | 3:-84735163 | MsG0380016528.01.T01:CDS |
| TATGATGTCTCTGGTGGTGG+TGG | 0.472299 | 3:-84735219 | MsG0380016528.01.T01:CDS |
| AATCGCCGCCGCGGAGAGAA+AGG | 0.479064 | 3:+84735430 | None:intergenic |
| TTCGACAAGGGTGTTGGAAG+TGG | 0.479331 | 3:+84735365 | None:intergenic |
| GCCAACAGGATCAGGTAAAC+GGG | 0.480137 | 3:-84734775 | MsG0380016528.01.T01:intron |
| GCGGAGAGAAAGGGGTTTGA+AGG | 0.485780 | 3:+84735440 | None:intergenic |
| AGCCCTTTACAAATCTCCTT+CGG | 0.491564 | 3:+84735108 | None:intergenic |
| GTGGAATTGTTGTTCGTCCT+GGG | 0.494095 | 3:-84735245 | MsG0380016528.01.T01:CDS |
| ACATGTAATTGGACAAGAAA+GGG | 0.498664 | 3:-84735079 | MsG0380016528.01.T01:CDS |
| CCTGGGAATTATGATGTCTC+TGG | 0.499020 | 3:-84735228 | MsG0380016528.01.T01:CDS |
| AATTATGATGTCTCTGGTGG+TGG | 0.499387 | 3:-84735222 | MsG0380016528.01.T01:CDS |
| GGAATTCGAAAGATTGGTGT+TGG | 0.500869 | 3:-84735164 | MsG0380016528.01.T01:CDS |
| CGAAAGATTGGTGTTGGGGT+GGG | 0.509067 | 3:-84735158 | MsG0380016528.01.T01:CDS |
| ATCGCCGCCGCGGAGAGAAA+GGG | 0.513488 | 3:+84735431 | None:intergenic |
| AGAGTCTTCGACAAGGGTGT+TGG | 0.521311 | 3:+84735359 | None:intergenic |
| TTACAAATCTCCTTCGGAGT+AGG | 0.522757 | 3:+84735114 | None:intergenic |
| GACATTACTTGCCAAAACCT+TGG | 0.522907 | 3:-84734429 | MsG0380016528.01.T01:CDS |
| GCAGGAGATTCAAATATTGA+TGG | 0.523586 | 3:-84734864 | MsG0380016528.01.T01:CDS |
| CCTCCTGAAGTTTGGTCTGG+TGG | 0.529025 | 3:-84735267 | MsG0380016528.01.T01:CDS |
| ACTCCGAAGGAGATTTGTAA+AGG | 0.529833 | 3:-84735111 | MsG0380016528.01.T01:CDS |
| AACATGTAATTGGACAAGAA+AGG | 0.533092 | 3:-84735080 | MsG0380016528.01.T01:CDS |
| TGGACAAGAAAGGGCCAAGA+AGG | 0.537784 | 3:-84735070 | MsG0380016528.01.T01:CDS |
| AACGCAGCAGCAGCAGCCAT+AGG | 0.537785 | 3:+84735600 | None:intergenic |
| TCGCCGCCGCGGAGAGAAAG+GGG | 0.544327 | 3:+84735432 | None:intergenic |
| TCGAAAGATTGGTGTTGGGG+TGG | 0.545065 | 3:-84735159 | MsG0380016528.01.T01:CDS |
| GTTGCATCTGCAATAACAAA+GGG | 0.554210 | 3:+84734389 | None:intergenic |
| GTTTCGATCAAAACCTTCAA+AGG | 0.567102 | 3:-84735580 | MsG0380016528.01.T01:CDS |
| CTAACTTGCCTGAGTGAGTG+TGG | 0.569064 | 3:+84734367 | None:intergenic |
| ATATCATGAAAAGTTGTGGT+TGG | 0.571097 | 3:-84735010 | MsG0380016528.01.T01:CDS |
| AACATTTACAAACCTAGCCA+AGG | 0.572679 | 3:+84734412 | None:intergenic |
| TTGATTAGAGTCTTCGACAA+GGG | 0.575403 | 3:+84735353 | None:intergenic |
| AATTCGAAAGATTGGTGTTG+GGG | 0.581592 | 3:-84735162 | MsG0380016528.01.T01:CDS |
| TACTTGCCAAAACCTTGGCT+AGG | 0.582606 | 3:-84734424 | MsG0380016528.01.T01:CDS |
| AGTAATAACATAACATGCTG+AGG | 0.587445 | 3:+84734980 | None:intergenic |
| GGCGGCGATTTCATCCATAA+GGG | 0.587537 | 3:-84735417 | MsG0380016528.01.T01:CDS |
| TTGATGTTGTTTCAAGGACA+GGG | 0.593969 | 3:-84734454 | MsG0380016528.01.T01:CDS |
| GAATATATCATGAAAAGTTG+TGG | 0.596768 | 3:-84735014 | MsG0380016528.01.T01:CDS |
| ACCCGTTTACCTGATCCTGT+TGG | 0.599247 | 3:+84734774 | None:intergenic |
| AGATGCAACCACACTCACTC+AGG | 0.599951 | 3:-84734375 | MsG0380016528.01.T01:CDS |
| GGGAATTATGATGTCTCTGG+TGG | 0.605432 | 3:-84735225 | MsG0380016528.01.T01:CDS |
| GACAAGGGTGTTGGAAGTGG+AGG | 0.607729 | 3:+84735368 | None:intergenic |
| GGTTGCATCTGCAATAACAA+AGG | 0.613374 | 3:+84734388 | None:intergenic |
| CCAGAGACATCATAATTCCC+AGG | 0.626744 | 3:+84735228 | None:intergenic |
| AGCGTAATTGAGATAACGCG+AGG | 0.627927 | 3:+84735547 | None:intergenic |
| GGCCAAGAAGGTGCTATCTG+TGG | 0.629236 | 3:-84735058 | MsG0380016528.01.T01:CDS |
| AAAGCAATATTCTTCTAATG+GGG | 0.630912 | 3:-84734797 | MsG0380016528.01.T01:CDS |
| TGGGGTGGGTCTAATATGGG+AGG | 0.644752 | 3:-84735144 | MsG0380016528.01.T01:CDS |
| CTGCTAGCTCTGGTGATTCG+GGG | 0.655355 | 3:-84735185 | MsG0380016528.01.T01:CDS |
| TTCAAACCCCTTTCTCTCCG+CGG | 0.655565 | 3:-84735438 | MsG0380016528.01.T01:CDS |
| GAAGGAAGTGAAGTGATAAG+GGG | 0.656718 | 3:+84735458 | None:intergenic |
| CCACCAGACCAAACTTCAGG+AGG | 0.658452 | 3:+84735267 | None:intergenic |
| GTGTTGATTAACGGTGAACG+TGG | 0.659264 | 3:+84735480 | None:intergenic |
| GTCGTCATCATCAACAACAT+CGG | 0.668112 | 3:+84734836 | None:intergenic |
| AGAAACAAGAACCCTATAAG+CGG | 0.677338 | 3:+84735302 | None:intergenic |
| AACTTCAGGAGGATCAACAA+AGG | 0.682725 | 3:+84735278 | None:intergenic |
| TTGATTAACGGTGAACGTGG+TGG | 0.683612 | 3:+84735483 | None:intergenic |
| GCATTCAATTACACCCACGC+TGG | 0.688326 | 3:-84735519 | MsG0380016528.01.T01:CDS |
| TATGGATGAAATCGCCGCCG+CGG | 0.692523 | 3:+84735421 | None:intergenic |
| TTTGATTAGAGTCTTCGACA+AGG | 0.700712 | 3:+84735352 | None:intergenic |
| AGAGTGTGAGTGACCAGCGT+GGG | 0.704639 | 3:+84735506 | None:intergenic |
| GCGTAATTGAGATAACGCGA+GGG | 0.704959 | 3:+84735548 | None:intergenic |
| AAACCCCTTTCTCTCCGCGG+CGG | 0.707422 | 3:-84735435 | MsG0380016528.01.T01:CDS |
| GAGAGTGTGAGTGACCAGCG+TGG | 0.757431 | 3:+84735505 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAGCAATATTCTTCTAAT+GGG | - | Chr3:84735166-84735185 | MsG0380016528.01.T01:CDS | 20.0% |
| !! | TAAATCACAAATTGTTCTAA+TGG | - | Chr3:84735302-84735321 | MsG0380016528.01.T01:CDS | 20.0% |
| !!! | TTTTTAATGTTCTTACTATC+TGG | - | Chr3:84735065-84735084 | MsG0380016528.01.T01:CDS | 20.0% |
| ! | AAAGCAATATTCTTCTAATG+GGG | - | Chr3:84735167-84735186 | MsG0380016528.01.T01:CDS | 25.0% |
| ! | AAATTTCAAGGAAATGATCA+TGG | + | Chr3:84735444-84735463 | None:intergenic | 25.0% |
| ! | CAAAGAAAAACAAGTTAAAC+TGG | + | Chr3:84735493-84735512 | None:intergenic | 25.0% |
| ! | GAAAAGCAATATTCTTCTAA+TGG | - | Chr3:84735165-84735184 | MsG0380016528.01.T01:CDS | 25.0% |
| ! | GAATATATCATGAAAAGTTG+TGG | - | Chr3:84734950-84734969 | MsG0380016528.01.T01:intron | 25.0% |
| ! | TTTAAGAAAATGACGATTTC+TGG | + | Chr3:84735381-84735400 | None:intergenic | 25.0% |
| !!! | TCGTCATTTTCTTAAATAGA+CGG | - | Chr3:84735385-84735404 | MsG0380016528.01.T01:CDS | 25.0% |
| !!! | TTTTCTTTGATGTTGTTTCA+AGG | - | Chr3:84735504-84735523 | MsG0380016528.01.T01:CDS | 25.0% |
| AACATGTAATTGGACAAGAA+AGG | - | Chr3:84734884-84734903 | MsG0380016528.01.T01:intron | 30.0% | |
| ACATCATAAGGAACATGATT+AGG | + | Chr3:84734640-84734659 | None:intergenic | 30.0% | |
| ACATGTAATTGGACAAGAAA+GGG | - | Chr3:84734885-84734904 | MsG0380016528.01.T01:intron | 30.0% | |
| AGTAATAACATAACATGCTG+AGG | + | Chr3:84734987-84735006 | None:intergenic | 30.0% | |
| ATATCATGAAAAGTTGTGGT+TGG | - | Chr3:84734954-84734973 | MsG0380016528.01.T01:intron | 30.0% | |
| CATCATAAGGAACATGATTA+GGG | + | Chr3:84734639-84734658 | None:intergenic | 30.0% | |
| TAGTATTACTACTACCCTTA+TGG | + | Chr3:84734564-84734583 | None:intergenic | 30.0% | |
| TTATGATGTAACCGCTTATA+GGG | - | Chr3:84734651-84734670 | MsG0380016528.01.T01:intron | 30.0% | |
| ! | TCATTTTCTTAAATAGACGG+GGG | - | Chr3:84735388-84735407 | MsG0380016528.01.T01:CDS | 30.0% |
| ! | TTCTTACTATCTGGAATGTT+AGG | - | Chr3:84735074-84735093 | MsG0380016528.01.T01:CDS | 30.0% |
| !! | CGTCATTTTCTTAAATAGAC+GGG | - | Chr3:84735386-84735405 | MsG0380016528.01.T01:CDS | 30.0% |
| !! | GTCATTTTCTTAAATAGACG+GGG | - | Chr3:84735387-84735406 | MsG0380016528.01.T01:CDS | 30.0% |
| AACATTTACAAACCTAGCCA+AGG | + | Chr3:84735555-84735574 | None:intergenic | 35.0% | |
| AGAAACAAGAACCCTATAAG+CGG | + | Chr3:84734665-84734684 | None:intergenic | 35.0% | |
| CTATAAGCGGTTACATCATA+AGG | + | Chr3:84734652-84734671 | None:intergenic | 35.0% | |
| CTTATGATGTAACCGCTTAT+AGG | - | Chr3:84734650-84734669 | MsG0380016528.01.T01:intron | 35.0% | |
| GCAGGAGATTCAAATATTGA+TGG | - | Chr3:84735100-84735119 | MsG0380016528.01.T01:CDS | 35.0% | |
| GGGCTTGATAAACATGTAAT+TGG | - | Chr3:84734874-84734893 | MsG0380016528.01.T01:intron | 35.0% | |
| GTTGCATCTGCAATAACAAA+GGG | + | Chr3:84735578-84735597 | None:intergenic | 35.0% | |
| GTTTCGATCAAAACCTTCAA+AGG | - | Chr3:84734384-84734403 | MsG0380016528.01.T01:CDS | 35.0% | |
| TGAAGGAAGTGAAGTGATAA+GGG | + | Chr3:84734510-84734529 | None:intergenic | 35.0% | |
| TTGAAGGAAGTGAAGTGATA+AGG | + | Chr3:84734511-84734530 | None:intergenic | 35.0% | |
| TTGATTAGAGTCTTCGACAA+GGG | + | Chr3:84734614-84734633 | None:intergenic | 35.0% | |
| TTTGATTAGAGTCTTCGACA+AGG | + | Chr3:84734615-84734634 | None:intergenic | 35.0% | |
| ! | GAATTCGAAAGATTGGTGTT+GGG | - | Chr3:84734801-84734820 | MsG0380016528.01.T01:CDS | 35.0% |
| ! | GAGGCATTAACGAAATTTCA+AGG | + | Chr3:84735456-84735475 | None:intergenic | 35.0% |
| ! | TTGAATTTTGTGCTCAGCAT+TGG | - | Chr3:84735342-84735361 | MsG0380016528.01.T01:CDS | 35.0% |
| !! | AATTCGAAAGATTGGTGTTG+GGG | - | Chr3:84734802-84734821 | MsG0380016528.01.T01:CDS | 35.0% |
| !! | TGATAAGGGGTGTTGATTAA+CGG | + | Chr3:84734496-84734515 | None:intergenic | 35.0% |
| !! | TTGATGTTGTTTCAAGGACA+GGG | - | Chr3:84735510-84735529 | MsG0380016528.01.T01:CDS | 35.0% |
| !! | TTTGATGTTGTTTCAAGGAC+AGG | - | Chr3:84735509-84735528 | MsG0380016528.01.T01:CDS | 35.0% |
| AACTTCAGGAGGATCAACAA+AGG | + | Chr3:84734689-84734708 | None:intergenic | 40.0% | |
| AATTATGATGTCTCTGGTGG+TGG | - | Chr3:84734742-84734761 | MsG0380016528.01.T01:intron | 40.0% | |
| ACTCCGAAGGAGATTTGTAA+AGG | - | Chr3:84734853-84734872 | MsG0380016528.01.T01:CDS | 40.0% | |
| AGCCCTTTACAAATCTCCTT+CGG | + | Chr3:84734859-84734878 | None:intergenic | 40.0% | |
| ATTCGGGGAATTCGAAAGAT+TGG | - | Chr3:84734794-84734813 | MsG0380016528.01.T01:CDS | 40.0% | |
| CGTTAATGCCTCATTTCTCA+TGG | - | Chr3:84735464-84735483 | MsG0380016528.01.T01:CDS | 40.0% | |
| CTCCGAAGGAGATTTGTAAA+GGG | - | Chr3:84734854-84734873 | MsG0380016528.01.T01:CDS | 40.0% | |
| GAAGGAAGTGAAGTGATAAG+GGG | + | Chr3:84734509-84734528 | None:intergenic | 40.0% | |
| GACATTACTTGCCAAAACCT+TGG | - | Chr3:84735535-84735554 | MsG0380016528.01.T01:CDS | 40.0% | |
| GGAATTCGAAAGATTGGTGT+TGG | - | Chr3:84734800-84734819 | MsG0380016528.01.T01:CDS | 40.0% | |
| GGTTGCATCTGCAATAACAA+AGG | + | Chr3:84735579-84735598 | None:intergenic | 40.0% | |
| GTCGTCATCATCAACAACAT+CGG | + | Chr3:84735131-84735150 | None:intergenic | 40.0% | |
| TTACAAATCTCCTTCGGAGT+AGG | + | Chr3:84734853-84734872 | None:intergenic | 40.0% | |
| TTGTTGATCCTCCTGAAGTT+TGG | - | Chr3:84734689-84734708 | MsG0380016528.01.T01:intron | 40.0% | |
| ! | TACAAACCTAGCCAAGGTTT+TGG | + | Chr3:84735549-84735568 | None:intergenic | 40.0% |
| ! | TTTTCTTAAATAGACGGGGG+AGG | - | Chr3:84735391-84735410 | MsG0380016528.01.T01:CDS | 40.0% |
| !!! | AGGGTTGCTTTTTCCTTTGA+AGG | + | Chr3:84734400-84734419 | None:intergenic | 40.0% |
| AACCATAAGTACGTCGAGAG+TGG | + | Chr3:84735227-84735246 | None:intergenic | 45.0% | |
| AAGTACGTCGAGAGTGGAAA+TGG | + | Chr3:84735221-84735240 | None:intergenic | 45.0% | |
| ACTGGTTGCCATGAGAAATG+AGG | + | Chr3:84735475-84735494 | None:intergenic | 45.0% | |
| AGCGTAATTGAGATAACGCG+AGG | + | Chr3:84734420-84734439 | None:intergenic | 45.0% | |
| ATTCTTCTAATGGGGCCAAC+AGG | - | Chr3:84735175-84735194 | MsG0380016528.01.T01:CDS | 45.0% | |
| CCAGAGACATCATAATTCCC+AGG | + | Chr3:84734739-84734758 | None:intergenic | 45.0% | |
| CCTGGGAATTATGATGTCTC+TGG | - | Chr3:84734736-84734755 | MsG0380016528.01.T01:intron | 45.0% | |
| GCGTAATTGAGATAACGCGA+GGG | + | Chr3:84734419-84734438 | None:intergenic | 45.0% | |
| GGGAATTATGATGTCTCTGG+TGG | - | Chr3:84734739-84734758 | MsG0380016528.01.T01:intron | 45.0% | |
| TACTTGCCAAAACCTTGGCT+AGG | - | Chr3:84735540-84735559 | MsG0380016528.01.T01:CDS | 45.0% | |
| TGTTGGGGTGGGTCTAATAT+GGG | - | Chr3:84734817-84734836 | MsG0380016528.01.T01:CDS | 45.0% | |
| TTCCACTCTCGACGTACTTA+TGG | - | Chr3:84735222-84735241 | MsG0380016528.01.T01:CDS | 45.0% | |
| TTGATTAACGGTGAACGTGG+TGG | + | Chr3:84734484-84734503 | None:intergenic | 45.0% | |
| ! | AGGTAGTTTTCCTACTCCGA+AGG | - | Chr3:84734840-84734859 | MsG0380016528.01.T01:CDS | 45.0% |
| ! | ATCTGGAATGTTAGGCATGC+AGG | - | Chr3:84735082-84735101 | MsG0380016528.01.T01:CDS | 45.0% |
| ! | GTGGAATTGTTGTTCGTCCT+GGG | - | Chr3:84734719-84734738 | MsG0380016528.01.T01:intron | 45.0% |
| !! | GTGTTGATTAACGGTGAACG+TGG | + | Chr3:84734487-84734506 | None:intergenic | 45.0% |
| ACCCGTTTACCTGATCCTGT+TGG | + | Chr3:84735193-84735212 | None:intergenic | 50.0% | |
| AGATGCAACCACACTCACTC+AGG | - | Chr3:84735589-84735608 | MsG0380016528.01.T01:CDS | 50.0% | |
| GATCCTCCTGAAGTTTGGTC+TGG | - | Chr3:84734694-84734713 | MsG0380016528.01.T01:intron | 50.0% | |
| GCATTCAATTACACCCACGC+TGG | - | Chr3:84734445-84734464 | MsG0380016528.01.T01:CDS | 50.0% | |
| GCCAACAGGATCAGGTAAAC+GGG | - | Chr3:84735189-84735208 | MsG0380016528.01.T01:CDS | 50.0% | |
| GGCCAACAGGATCAGGTAAA+CGG | - | Chr3:84735188-84735207 | MsG0380016528.01.T01:CDS | 50.0% | |
| GGCGGCGATTTCATCCATAA+GGG | - | Chr3:84734547-84734566 | MsG0380016528.01.T01:intron | 50.0% | |
| GTGTTGGGGTGGGTCTAATA+TGG | - | Chr3:84734816-84734835 | MsG0380016528.01.T01:CDS | 50.0% | |
| TGCCACAGATAGCACCTTCT+TGG | + | Chr3:84734911-84734930 | None:intergenic | 50.0% | |
| TGGACAAGAAAGGGCCAAGA+AGG | - | Chr3:84734894-84734913 | MsG0380016528.01.T01:intron | 50.0% | |
| TTCAAACCCCTTTCTCTCCG+CGG | - | Chr3:84734526-84734545 | MsG0380016528.01.T01:intron | 50.0% | |
| TTGGAAGTGGAGGCAGTAGA+AGG | + | Chr3:84734589-84734608 | None:intergenic | 50.0% | |
| ! | AGAGTCTTCGACAAGGGTGT+TGG | + | Chr3:84734608-84734627 | None:intergenic | 50.0% |
| ! | CTAACTTGCCTGAGTGAGTG+TGG | + | Chr3:84735600-84735619 | None:intergenic | 50.0% |
| ! | GGTGGAATTGTTGTTCGTCC+TGG | - | Chr3:84734718-84734737 | MsG0380016528.01.T01:intron | 50.0% |
| !! | CGAAAGATTGGTGTTGGGGT+GGG | - | Chr3:84734806-84734825 | MsG0380016528.01.T01:CDS | 50.0% |
| !! | TATGATGTCTCTGGTGGTGG+TGG | - | Chr3:84734745-84734764 | MsG0380016528.01.T01:intron | 50.0% |
| !! | TCGAAAGATTGGTGTTGGGG+TGG | - | Chr3:84734805-84734824 | MsG0380016528.01.T01:CDS | 50.0% |
| !! | TGCTGCTAGCTCTGGTGATT+CGG | - | Chr3:84734777-84734796 | MsG0380016528.01.T01:CDS | 50.0% |
| !! | TTCGACAAGGGTGTTGGAAG+TGG | + | Chr3:84734602-84734621 | None:intergenic | 50.0% |
| ACGGGGGAGGCAATTGAGTT+TGG | - | Chr3:84735404-84735423 | MsG0380016528.01.T01:CDS | 55.0% | |
| AGAGTGTGAGTGACCAGCGT+GGG | + | Chr3:84734461-84734480 | None:intergenic | 55.0% | |
| CCACCACCAGACCAAACTTC+AGG | + | Chr3:84734703-84734722 | None:intergenic | 55.0% | |
| CCACCAGACCAAACTTCAGG+AGG | + | Chr3:84734700-84734719 | None:intergenic | 55.0% | |
| CCTCCTGAAGTTTGGTCTGG+TGG | - | Chr3:84734697-84734716 | MsG0380016528.01.T01:intron | 55.0% | |
| CCTGAAGTTTGGTCTGGTGG+TGG | - | Chr3:84734700-84734719 | MsG0380016528.01.T01:intron | 55.0% | |
| CGGCGGCGATTTCATCCATA+AGG | - | Chr3:84734546-84734565 | MsG0380016528.01.T01:intron | 55.0% | |
| CGGGGGAGGCAATTGAGTTT+GGG | - | Chr3:84735405-84735424 | MsG0380016528.01.T01:CDS | 55.0% | |
| CTAATGGGGCCAACAGGATC+AGG | - | Chr3:84735181-84735200 | MsG0380016528.01.T01:CDS | 55.0% | |
| GCGGAGAGAAAGGGGTTTGA+AGG | + | Chr3:84734527-84734546 | None:intergenic | 55.0% | |
| TATGGATGAAATCGCCGCCG+CGG | + | Chr3:84734546-84734565 | None:intergenic | 55.0% | |
| TGGGGTGGGTCTAATATGGG+AGG | - | Chr3:84734820-84734839 | MsG0380016528.01.T01:CDS | 55.0% | |
| !! | CTGCTAGCTCTGGTGATTCG+GGG | - | Chr3:84734779-84734798 | MsG0380016528.01.T01:CDS | 55.0% |
| !! | GACAAGGGTGTTGGAAGTGG+AGG | + | Chr3:84734599-84734618 | None:intergenic | 55.0% |
| !! | GCTGCTAGCTCTGGTGATTC+GGG | - | Chr3:84734778-84734797 | MsG0380016528.01.T01:CDS | 55.0% |
| !! | GGCCAAGAAGGTGCTATCTG+TGG | - | Chr3:84734906-84734925 | MsG0380016528.01.T01:intron | 55.0% |
| AAACCCCTTTCTCTCCGCGG+CGG | - | Chr3:84734529-84734548 | MsG0380016528.01.T01:intron | 60.0% | |
| ! | GAGAGTGTGAGTGACCAGCG+TGG | + | Chr3:84734462-84734481 | None:intergenic | 60.0% |
| !! | GATGTCTCTGGTGGTGGTGG+AGG | - | Chr3:84734748-84734767 | MsG0380016528.01.T01:intron | 60.0% |
| AATCGCCGCCGCGGAGAGAA+AGG | + | Chr3:84734537-84734556 | None:intergenic | 65.0% | |
| ATCGCCGCCGCGGAGAGAAA+GGG | + | Chr3:84734536-84734555 | None:intergenic | 65.0% | |
| !! | GGTGGTGGTGCTGCTAGCTC+TGG | - | Chr3:84734769-84734788 | MsG0380016528.01.T01:intron | 65.0% |
| !! | GTCTCTGGTGGTGGTGGAGG+TGG | - | Chr3:84734751-84734770 | MsG0380016528.01.T01:intron | 65.0% |
| !! | TCTGGTGGTGGTGGAGGTGG+TGG | - | Chr3:84734754-84734773 | MsG0380016528.01.T01:intron | 65.0% |
| TCGCCGCCGCGGAGAGAAAG+GGG | + | Chr3:84734535-84734554 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr3 | gene | 84734367 | 84735619 | 84734367 | ID=MsG0380016528.01;Name=MsG0380016528.01 |
| Chr3 | mRNA | 84734367 | 84735619 | 84734367 | ID=MsG0380016528.01.T01;Parent=MsG0380016528.01;Name=MsG0380016528.01.T01;_AED=0.48;_eAED=0.51;_QI=0|0|0|1|0.5|0.33|3|0|288 |
| Chr3 | exon | 84734994 | 84735619 | 84734994 | ID=MsG0380016528.01.T01:exon:33566;Parent=MsG0380016528.01.T01 |
| Chr3 | exon | 84734776 | 84734890 | 84734776 | ID=MsG0380016528.01.T01:exon:33565;Parent=MsG0380016528.01.T01 |
| Chr3 | exon | 84734367 | 84734492 | 84734367 | ID=MsG0380016528.01.T01:exon:33564;Parent=MsG0380016528.01.T01 |
| Chr3 | CDS | 84734994 | 84735619 | 84734994 | ID=MsG0380016528.01.T01:cds;Parent=MsG0380016528.01.T01 |
| Chr3 | CDS | 84734776 | 84734890 | 84734776 | ID=MsG0380016528.01.T01:cds;Parent=MsG0380016528.01.T01 |
| Chr3 | CDS | 84734367 | 84734492 | 84734367 | ID=MsG0380016528.01.T01:cds;Parent=MsG0380016528.01.T01 |
| Gene Sequence |
| Protein sequence |
