AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380016089.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016089.01.T01 MTR_3g083180 77.778 243 14 3 1 205 1 241 1.73e-127 374
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016089.01.T01 AT2G04842 56.938 209 48 4 39 205 31 239 6.09e-71 227
MsG0380016089.01.T01 AT2G04842 56.938 209 48 4 39 205 31 239 6.09e-71 227

Find 59 sgRNAs with CRISPR-Local

Find 182 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAGAGGGGTATGGAGTTTA+AGG 0.173364 3:+79017306 None:intergenic
ATCGGGCCTTGGATAGAAAA+TGG 0.232158 3:-79015891 MsG0380016089.01.T01:CDS
GATGGTAAGTCCTTTATATT+TGG 0.263578 3:-79015805 MsG0380016089.01.T01:CDS
CCAATGCTGCAAAGGATATA+TGG 0.287726 3:-79014571 MsG0380016089.01.T01:CDS
TCCTTGAAGGCGGGGAGTGG+TGG 0.306185 3:-79014699 MsG0380016089.01.T01:intron
AGTCTATTGCTGGTGCTTAC+TGG 0.312521 3:-79014612 MsG0380016089.01.T01:CDS
ATCGGAGACCGCGGCGGGTT+GGG 0.342148 3:+79017193 None:intergenic
TACATAACTACCAAATATAA+AGG 0.364620 3:+79015795 None:intergenic
GTGTTGGACGATTCATTAGT+AGG 0.373868 3:+79017143 None:intergenic
CCATATATCCTTTGCAGCAT+TGG 0.378495 3:+79014571 None:intergenic
GTTGAACTTGAGTCTATTGC+TGG 0.414953 3:-79014622 MsG0380016089.01.T01:CDS
CCTTGAAGGCGGGGAGTGGT+GGG 0.437435 3:-79014698 MsG0380016089.01.T01:intron
GGACCTCATGTTGAATCTAC+TGG 0.441354 3:-79014664 MsG0380016089.01.T01:CDS
CAAAAGTCACAATCGGGCCT+TGG 0.442699 3:-79015902 MsG0380016089.01.T01:CDS
GAGACCGCGGCGGGTTGGGA+AGG 0.445245 3:+79017197 None:intergenic
CATTAGTAGGGAGAACAATT+CGG 0.454383 3:+79017156 None:intergenic
TCGGTCTTGGCGGTCGGAAT+CGG 0.457890 3:+79017175 None:intergenic
TAGGGAGAACAATTCGGTCT+TGG 0.461422 3:+79017162 None:intergenic
TTGGGAAGGGCTCGTGGCGA+CGG 0.463681 3:+79017211 None:intergenic
AGACCGCGGCGGGTTGGGAA+GGG 0.475405 3:+79017198 None:intergenic
TCGGGCCTTGGATAGAAAAT+GGG 0.479957 3:-79015890 MsG0380016089.01.T01:CDS
GGCGAGAGTGGAGAATTTCC+TGG 0.479957 3:+79017232 None:intergenic
CCTCAAGCAAAAGTCACAAT+CGG 0.480420 3:-79015909 MsG0380016089.01.T01:CDS
TCGGAATCGGAGACCGCGGC+GGG 0.480962 3:+79017188 None:intergenic
AATCGGAGACCGCGGCGGGT+TGG 0.491466 3:+79017192 None:intergenic
GGAGAATTTCCTGGTGAAGA+AGG 0.498283 3:+79017241 None:intergenic
TTCAAATCTTTATCTGTCAA+AGG 0.499220 3:+79015843 None:intergenic
AACAATTCGGTCTTGGCGGT+CGG 0.508431 3:+79017169 None:intergenic
ATGGAGTTTAAGGAAATGAA+TGG 0.509268 3:+79017316 None:intergenic
CAACTCCATCCTTCTTCACC+AGG 0.515417 3:-79017250 MsG0380016089.01.T01:CDS
GGAGAACAATTCGGTCTTGG+CGG 0.516702 3:+79017165 None:intergenic
CTCAAGCAAAAGTCACAATC+GGG 0.531108 3:-79015908 MsG0380016089.01.T01:CDS
GGCGGGTTGGGAAGGGCTCG+TGG 0.534175 3:+79017205 None:intergenic
GCTCGTGGCGACGGCGAGAG+TGG 0.544897 3:+79017220 None:intergenic
AAAAGAAACCAATGCTGCAA+AGG 0.547530 3:-79014579 MsG0380016089.01.T01:CDS
TGTTGGACGATTCATTAGTA+GGG 0.549494 3:+79017144 None:intergenic
GAAGAGAATCAAGAAAGAGA+TGG 0.552555 3:-79015823 MsG0380016089.01.T01:CDS
GAGTGGTGGGACCTATGTGC+TGG 0.554699 3:-79014685 MsG0380016089.01.T01:CDS
AATTTCCTGGTGAAGAAGGA+TGG 0.560669 3:+79017245 None:intergenic
GGAGAACGAAGAGAACGAAA+AGG 0.567347 3:+79017272 None:intergenic
GTTGCAGTGTGCGCATGTGA+TGG 0.569803 3:-79015955 MsG0380016089.01.T01:intron
CTGGTGAAGAAGGATGGAGT+TGG 0.572115 3:+79017251 None:intergenic
GATGAAAGTGTTGTAGCCAT+GGG 0.575447 3:+79017341 None:intergenic
AAAGGATATATGGTACTGCA+TGG 0.580353 3:-79014561 MsG0380016089.01.T01:CDS
ACGAATTCTGAGAAGGGTGT+TGG 0.582645 3:+79017127 None:intergenic
AGATGAAAGTGTTGTAGCCA+TGG 0.586881 3:+79017340 None:intergenic
CAACATGAGGTCCAGCACAT+AGG 0.588542 3:+79014674 None:intergenic
CCGTGTGACGAATTCTGAGA+AGG 0.591467 3:+79017120 None:intergenic
GTCGGAATCGGAGACCGCGG+CGG 0.606459 3:+79017187 None:intergenic
AGCAATAGACTCAAGTTCAA+CGG 0.609015 3:+79014624 None:intergenic
TTTCCAGTAGATTCAACATG+AGG 0.609326 3:+79014661 None:intergenic
AAGGATATATGGTACTGCAT+GGG 0.617021 3:-79014560 MsG0380016089.01.T01:CDS
CGTGTGACGAATTCTGAGAA+GGG 0.623042 3:+79017121 None:intergenic
GTGTGCGCATGTGATGGCAA+TGG 0.630937 3:-79015949 MsG0380016089.01.T01:CDS
ATTGCTGGTGCTTACTGGAG+AGG 0.632091 3:-79014607 MsG0380016089.01.T01:CDS
GAGCCCTTCCCAACCCGCCG+CGG 0.655956 3:-79017201 MsG0380016089.01.T01:CDS
GCGGTCGGAATCGGAGACCG+CGG 0.660960 3:+79017184 None:intergenic
CCTTCTCAGAATTCGTCACA+CGG 0.668959 3:-79017120 MsG0380016089.01.T01:intron
AAGTGTTGTAGCCATGGGAA+CGG 0.698594 3:+79017346 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAATTGAATTAAACATCAA+AGG + Chr3:79015625-79015644 None:intergenic 15.0%
!!! AGATACTTGTTATTTTATAA+AGG + Chr3:79015755-79015774 None:intergenic 15.0%
!!! ATCAAAATAAATTTGTTAAC+CGG - Chr3:79016618-79016637 MsG0380016089.01.T01:intron 15.0%
!!! ATGTAATAAGTTTTTATTTG+AGG - Chr3:79015471-79015490 MsG0380016089.01.T01:intron 15.0%
!!! GATACTTGTTATTTTATAAA+GGG + Chr3:79015754-79015773 None:intergenic 15.0%
!!! TAACAAATTTATTTTGATCA+AGG + Chr3:79016616-79016635 None:intergenic 15.0%
!! ATAAAATAACAAGTATCTCT+GGG - Chr3:79015757-79015776 MsG0380016089.01.T01:intron 20.0%
!! ATATTTGTGTAAACAAAATG+AGG + Chr3:79016692-79016711 None:intergenic 20.0%
!! TAATGAATTTGACTGAAATA+TGG - Chr3:79015355-79015374 MsG0380016089.01.T01:intron 20.0%
!! TACATAACTACCAAATATAA+AGG + Chr3:79016116-79016135 None:intergenic 20.0%
!! TATAAAATAACAAGTATCTC+TGG - Chr3:79015756-79015775 MsG0380016089.01.T01:intron 20.0%
!!! CATATTTTTAAAGTCAGTAA+TGG - Chr3:79016873-79016892 MsG0380016089.01.T01:intron 20.0%
!!! CATTACTGACTTTAAAAATA+TGG + Chr3:79016875-79016894 None:intergenic 20.0%
!!! GTTTTATTATGACTTTGATA+TGG - Chr3:79016040-79016059 MsG0380016089.01.T01:intron 20.0%
!!! TTATTTCTTATATTGTCTGT+AGG - Chr3:79016190-79016209 MsG0380016089.01.T01:intron 20.0%
! AAAGAAAAAGTTATTGTCTG+AGG - Chr3:79017147-79017166 MsG0380016089.01.T01:CDS 25.0%
! AAAGGAAAAGAAAAAGAAAG+AGG + Chr3:79014621-79014640 None:intergenic 25.0%
! AAATACTGAAACGTATTTCT+GGG - Chr3:79015839-79015858 MsG0380016089.01.T01:CDS 25.0%
! AACATATGTGTCTATTATTG+AGG + Chr3:79016544-79016563 None:intergenic 25.0%
! AAGGAAAAGAAAAAGAAAGA+GGG + Chr3:79014620-79014639 None:intergenic 25.0%
! ACATATGTGTCTATTATTGA+GGG + Chr3:79016543-79016562 None:intergenic 25.0%
! AGTTTAACTAATAAGTTGCA+GGG - Chr3:79015931-79015950 MsG0380016089.01.T01:CDS 25.0%
! ATTGAAGTTTAAAAGCTAGT+GGG - Chr3:79016321-79016340 MsG0380016089.01.T01:intron 25.0%
! TAAAATAACAAGTATCTCTG+GGG - Chr3:79015758-79015777 MsG0380016089.01.T01:intron 25.0%
! TAAACACAACAAAAGTTTCA+TGG + Chr3:79014834-79014853 None:intergenic 25.0%
! TAGTTTAACTAATAAGTTGC+AGG - Chr3:79015930-79015949 MsG0380016089.01.T01:CDS 25.0%
! TTCAAATCTTTATCTGTCAA+AGG + Chr3:79016068-79016087 None:intergenic 25.0%
!! CTAAAAAAATGGTGGAAAAT+AGG - Chr3:79015271-79015290 MsG0380016089.01.T01:intron 25.0%
!!! TTCTTATCCTTGTTTTGATA+TGG - Chr3:79016829-79016848 MsG0380016089.01.T01:intron 25.0%
AAACTATTTGTGAACTTGTG+GGG + Chr3:79016754-79016773 None:intergenic 30.0%
AATCATGCCATATCAAAACA+AGG + Chr3:79016839-79016858 None:intergenic 30.0%
AGAACCAAAGAATTATTCCA+TGG + Chr3:79016780-79016799 None:intergenic 30.0%
AGGAAAAGAAAAAGAAAGAG+GGG + Chr3:79014619-79014638 None:intergenic 30.0%
ATGACTATTATACACATGCA+TGG + Chr3:79016409-79016428 None:intergenic 30.0%
ATGGAGTTTAAGGAAATGAA+TGG + Chr3:79014595-79014614 None:intergenic 30.0%
CAAACTATTTGTGAACTTGT+GGG + Chr3:79016755-79016774 None:intergenic 30.0%
CACAAGTTCACAAATAGTTT+GGG - Chr3:79016754-79016773 MsG0380016089.01.T01:intron 30.0%
CATGTGTATAATAGTCATTC+TGG - Chr3:79016411-79016430 MsG0380016089.01.T01:intron 30.0%
CATTGAAGTTTAAAAGCTAG+TGG - Chr3:79016320-79016339 MsG0380016089.01.T01:intron 30.0%
GAAATACTGAAACGTATTTC+TGG - Chr3:79015838-79015857 MsG0380016089.01.T01:CDS 30.0%
GAGAGATAATCGTTATTGTA+TGG - Chr3:79016438-79016457 MsG0380016089.01.T01:intron 30.0%
GATGGTAAGTCCTTTATATT+TGG - Chr3:79016103-79016122 MsG0380016089.01.T01:intron 30.0%
GTATTTCATGTCATAGAGAA+AGG + Chr3:79015825-79015844 None:intergenic 30.0%
TCTGAATTATGCTACATTCA+TGG - Chr3:79016156-79016175 MsG0380016089.01.T01:intron 30.0%
TGAAACTTCTTCTCTTACAA+GGG + Chr3:79016240-79016259 None:intergenic 30.0%
TGAAGCTCATAGAAGAATAT+TGG - Chr3:79016265-79016284 MsG0380016089.01.T01:intron 30.0%
TTGAAACTTCTTCTCTTACA+AGG + Chr3:79016241-79016260 None:intergenic 30.0%
TTTGAATGAACCATACAAGA+TGG - Chr3:79016289-79016308 MsG0380016089.01.T01:intron 30.0%
! AAATTGGCTTCATGATACTT+AGG + Chr3:79016722-79016741 None:intergenic 30.0%
! AATACTGAAACGTATTTCTG+GGG - Chr3:79015840-79015859 MsG0380016089.01.T01:CDS 30.0%
! CAATGTTGTATGTCTGAAAT+TGG - Chr3:79017040-79017059 MsG0380016089.01.T01:intron 30.0%
! TAAAACCCATTTTCTATCCA+AGG + Chr3:79016026-79016045 None:intergenic 30.0%
! TTATGTTCCTTTTTCCTTGA+AGG - Chr3:79017196-79017215 MsG0380016089.01.T01:CDS 30.0%
! TTTTCTTTCAATGCAATGCA+AGG + Chr3:79017135-79017154 None:intergenic 30.0%
!! ACAATTAGCACAACTGATTT+TGG - Chr3:79015718-79015737 MsG0380016089.01.T01:intron 30.0%
!!! TTCTGGGGAATTATTTTTGA+GGG - Chr3:79015855-79015874 MsG0380016089.01.T01:CDS 30.0%
!!! TTTCTGGGGAATTATTTTTG+AGG - Chr3:79015854-79015873 MsG0380016089.01.T01:CDS 30.0%
AAAAGAAACCAATGCTGCAA+AGG - Chr3:79017329-79017348 MsG0380016089.01.T01:CDS 35.0%
AAAGGATATATGGTACTGCA+TGG - Chr3:79017347-79017366 MsG0380016089.01.T01:CDS 35.0%
AAGAAAAAGAAAGAGGGGTA+TGG + Chr3:79014614-79014633 None:intergenic 35.0%
AAGGATATATGGTACTGCAT+GGG - Chr3:79017348-79017367 MsG0380016089.01.T01:CDS 35.0%
AGCAATAGACTCAAGTTCAA+CGG + Chr3:79017287-79017306 None:intergenic 35.0%
AGCACAGATAGTAGAAAAGA+TGG - Chr3:79014900-79014919 MsG0380016089.01.T01:intron 35.0%
ATGCTTCAGCAGAATGAAAA+TGG - Chr3:79017016-79017035 MsG0380016089.01.T01:intron 35.0%
CATTAGTAGGGAGAACAATT+CGG + Chr3:79014755-79014774 None:intergenic 35.0%
CCAAACTATTTGTGAACTTG+TGG + Chr3:79016756-79016775 None:intergenic 35.0%
CCACAAGTTCACAAATAGTT+TGG - Chr3:79016753-79016772 MsG0380016089.01.T01:intron 35.0%
CTCTAAATACTTGAGCTTAG+TGG + Chr3:79016957-79016976 None:intergenic 35.0%
GAAACTTCTTCTCTTACAAG+GGG + Chr3:79016239-79016258 None:intergenic 35.0%
GAAGAGAATCAAGAAAGAGA+TGG - Chr3:79016085-79016104 MsG0380016089.01.T01:intron 35.0%
GGAAAAAGGAACATAAGTTG+AGG + Chr3:79017192-79017211 None:intergenic 35.0%
GGATAAGAAACAAAATGCAG+TGG + Chr3:79016818-79016837 None:intergenic 35.0%
TCATAGAGAAAGGCAGATAA+AGG + Chr3:79015815-79015834 None:intergenic 35.0%
TGAAATTGGAACTGTGAAGA+TGG - Chr3:79017054-79017073 MsG0380016089.01.T01:intron 35.0%
TGCAAAATCTCCATCTTGTA+TGG + Chr3:79016302-79016321 None:intergenic 35.0%
TGTTGGACGATTCATTAGTA+GGG + Chr3:79014767-79014786 None:intergenic 35.0%
TTTCCAGTAGATTCAACATG+AGG + Chr3:79017250-79017269 None:intergenic 35.0%
! CAAGGTACTTTGTTAGAGAA+AGG + Chr3:79016598-79016617 None:intergenic 35.0%
! TAACTTCCACACTAGTTTGA+AGG + Chr3:79016921-79016940 None:intergenic 35.0%
! TTGAGGGTAAAGCTTTTGAA+CGG + Chr3:79015985-79016004 None:intergenic 35.0%
!! AAGTCAGTAATGGTGTTATG+AGG - Chr3:79016883-79016902 MsG0380016089.01.T01:intron 35.0%
!!! AATTATTTTTGAGGGGGTGT+TGG - Chr3:79015863-79015882 MsG0380016089.01.T01:CDS 35.0%
!!! TCTGGGGAATTATTTTTGAG+GGG - Chr3:79015856-79015875 MsG0380016089.01.T01:CDS 35.0%
AAACAAAATGCAGTGGAGCA+TGG + Chr3:79016811-79016830 None:intergenic 40.0%
AATTTCCTGGTGAAGAAGGA+TGG + Chr3:79014666-79014685 None:intergenic 40.0%
AGCTAGCGCTAAAAAAATGG+TGG - Chr3:79015263-79015282 MsG0380016089.01.T01:intron 40.0%
CAAGTCATATCCCACTAAGA+GGG + Chr3:79015412-79015431 None:intergenic 40.0%
CCAATGCTGCAAAGGATATA+TGG - Chr3:79017337-79017356 MsG0380016089.01.T01:CDS 40.0%
CCATATATCCTTTGCAGCAT+TGG + Chr3:79017340-79017359 None:intergenic 40.0%
CCTCAAGCAAAAGTCACAAT+CGG - Chr3:79015999-79016018 MsG0380016089.01.T01:intron 40.0%
CTACTAACTCTGTGGTTCTT+AGG - Chr3:79016463-79016482 MsG0380016089.01.T01:intron 40.0%
CTCAAGCAAAAGTCACAATC+GGG - Chr3:79016000-79016019 MsG0380016089.01.T01:intron 40.0%
GAGAGCTAGCGCTAAAAAAA+TGG - Chr3:79015260-79015279 MsG0380016089.01.T01:intron 40.0%
GCTATGGGGGAAAAAGAAAT+GGG - Chr3:79016349-79016368 MsG0380016089.01.T01:intron 40.0%
GTATGGATCTACTAACTCTG+TGG - Chr3:79016455-79016474 MsG0380016089.01.T01:intron 40.0%
GTGTTGGACGATTCATTAGT+AGG + Chr3:79014768-79014787 None:intergenic 40.0%
GTTGAACTTGAGTCTATTGC+TGG - Chr3:79017286-79017305 MsG0380016089.01.T01:CDS 40.0%
TGATCACCTTCAAACTAGTG+TGG - Chr3:79016912-79016931 MsG0380016089.01.T01:intron 40.0%
TGGGCCATGGAATAATTCTT+TGG - Chr3:79016773-79016792 MsG0380016089.01.T01:intron 40.0%
TTCACAAATAGTTTGGGCCA+TGG - Chr3:79016760-79016779 MsG0380016089.01.T01:intron 40.0%
TTCTGCTGAAGCATGTCAAT+TGG + Chr3:79017010-79017029 None:intergenic 40.0%
TTTATGTCGTTGACGAGTTG+AGG - Chr3:79014875-79014894 MsG0380016089.01.T01:intron 40.0%
! AAAGAGGGGTATGGAGTTTA+AGG + Chr3:79014605-79014624 None:intergenic 40.0%
! CGATTGTGACTTTTGCTTGA+GGG + Chr3:79016001-79016020 None:intergenic 40.0%
! CTTTCTTTCTGAGAGCAATG+TGG + Chr3:79015541-79015560 None:intergenic 40.0%
! GTTTAAAAGCTAGTGGGTGA+AGG - Chr3:79016327-79016346 MsG0380016089.01.T01:intron 40.0%
! TCTGGGGTACTCAAATTGAA+AGG - Chr3:79015774-79015793 MsG0380016089.01.T01:intron 40.0%
! TGTTCCTTTTTCCTTGAAGG+CGG - Chr3:79017199-79017218 MsG0380016089.01.T01:CDS 40.0%
! TTATGTCGTTGACGAGTTGA+GGG - Chr3:79014876-79014895 MsG0380016089.01.T01:intron 40.0%
!! AGATGAAAGTGTTGTAGCCA+TGG + Chr3:79014571-79014590 None:intergenic 40.0%
!! GATGAAAGTGTTGTAGCCAT+GGG + Chr3:79014570-79014589 None:intergenic 40.0%
!! TATCATGTGCAGCTTGTTAC+TGG - Chr3:79016563-79016582 MsG0380016089.01.T01:intron 40.0%
!!! CTGGGGAATTATTTTTGAGG+GGG - Chr3:79015857-79015876 MsG0380016089.01.T01:CDS 40.0%
AGTCTATTGCTGGTGCTTAC+TGG - Chr3:79017296-79017315 MsG0380016089.01.T01:CDS 45.0%
ATCGGGCCTTGGATAGAAAA+TGG - Chr3:79016017-79016036 MsG0380016089.01.T01:intron 45.0%
CCAAGTCATATCCCACTAAG+AGG + Chr3:79015413-79015432 None:intergenic 45.0%
CCTCTTAGTGGGATATGACT+TGG - Chr3:79015410-79015429 MsG0380016089.01.T01:intron 45.0%
CCTTCTCAGAATTCGTCACA+CGG - Chr3:79014788-79014807 MsG0380016089.01.T01:intron 45.0%
GGACCTCATGTTGAATCTAC+TGG - Chr3:79017244-79017263 MsG0380016089.01.T01:CDS 45.0%
GGAGAACGAAGAGAACGAAA+AGG + Chr3:79014639-79014658 None:intergenic 45.0%
GGAGAATTTCCTGGTGAAGA+AGG + Chr3:79014670-79014689 None:intergenic 45.0%
GGCTATGGGGGAAAAAGAAA+TGG - Chr3:79016348-79016367 MsG0380016089.01.T01:intron 45.0%
GGTTGTTGTCGTTGTCTTTC+TGG - Chr3:79015431-79015450 MsG0380016089.01.T01:intron 45.0%
TAGGGAGAACAATTCGGTCT+TGG + Chr3:79014749-79014768 None:intergenic 45.0%
TCATATCCCACTAAGAGGGT+CGG + Chr3:79015408-79015427 None:intergenic 45.0%
TCGGGCCTTGGATAGAAAAT+GGG - Chr3:79016018-79016037 MsG0380016089.01.T01:intron 45.0%
TTGTGAACTTGTGGGGATGA+TGG + Chr3:79016747-79016766 None:intergenic 45.0%
! AAGTGTTGTAGCCATGGGAA+CGG + Chr3:79014565-79014584 None:intergenic 45.0%
! ACGAATTCTGAGAAGGGTGT+TGG + Chr3:79014784-79014803 None:intergenic 45.0%
! CCGATTGTGACTTTTGCTTG+AGG + Chr3:79016002-79016021 None:intergenic 45.0%
! CGTGTGACGAATTCTGAGAA+GGG + Chr3:79014790-79014809 None:intergenic 45.0%
! GTTCCTTTTTCCTTGAAGGC+GGG - Chr3:79017200-79017219 MsG0380016089.01.T01:CDS 45.0%
! TACTCTTTTCACCGTTCCCA+TGG - Chr3:79014551-79014570 MsG0380016089.01.T01:CDS 45.0%
! TGTGGGGATGATGGTGAAAT+TGG + Chr3:79016738-79016757 None:intergenic 45.0%
! TTCCTTTTTCCTTGAAGGCG+GGG - Chr3:79017201-79017220 MsG0380016089.01.T01:CDS 45.0%
AACAATTCGGTCTTGGCGGT+CGG + Chr3:79014742-79014761 None:intergenic 50.0%
AGAGAGAGAGAGGAGAGAAG+AGG - Chr3:79015146-79015165 MsG0380016089.01.T01:intron 50.0%
AGCAAGGACTTAGAGAGGAC+CGG + Chr3:79016640-79016659 None:intergenic 50.0%
ATGTAGCCGACCCTCTTAGT+GGG - Chr3:79015399-79015418 MsG0380016089.01.T01:intron 50.0%
ATTGCTGGTGCTTACTGGAG+AGG - Chr3:79017301-79017320 MsG0380016089.01.T01:CDS 50.0%
CAAAAGTCACAATCGGGCCT+TGG - Chr3:79016006-79016025 MsG0380016089.01.T01:intron 50.0%
CAACATGAGGTCCAGCACAT+AGG + Chr3:79017237-79017256 None:intergenic 50.0%
CAACTCCATCCTTCTTCACC+AGG - Chr3:79014658-79014677 MsG0380016089.01.T01:CDS 50.0%
CTGGGGTTGCTCTTGGATAA+GGG - Chr3:79016658-79016677 MsG0380016089.01.T01:intron 50.0%
CTGGTGAAGAAGGATGGAGT+TGG + Chr3:79014660-79014679 None:intergenic 50.0%
GAGAGAGAGAAGAGAGAGAG+AGG - Chr3:79015136-79015155 MsG0380016089.01.T01:intron 50.0%
GGAGAACAATTCGGTCTTGG+CGG + Chr3:79014746-79014765 None:intergenic 50.0%
GTCCTCTCTAAGTCCTTGCT+GGG - Chr3:79016640-79016659 MsG0380016089.01.T01:intron 50.0%
TATGTAGCCGACCCTCTTAG+TGG - Chr3:79015398-79015417 MsG0380016089.01.T01:intron 50.0%
TCCTCTCTAAGTCCTTGCTG+GGG - Chr3:79016641-79016660 MsG0380016089.01.T01:intron 50.0%
! AAGCTAGTGGGTGAAGGCTA+TGG - Chr3:79016333-79016352 MsG0380016089.01.T01:intron 50.0%
! AGCTAGTGGGTGAAGGCTAT+GGG - Chr3:79016334-79016353 MsG0380016089.01.T01:intron 50.0%
! CCGTGTGACGAATTCTGAGA+AGG + Chr3:79014791-79014810 None:intergenic 50.0%
! CTTTCTGAGAGCAATGTGGC+AGG + Chr3:79015537-79015556 None:intergenic 50.0%
ACCCCAGCAAGGACTTAGAG+AGG + Chr3:79016645-79016664 None:intergenic 55.0%
ATCCAAGAGCAACCCCAGCA+AGG + Chr3:79016656-79016675 None:intergenic 55.0%
CTCCCCGCCTTCAAGGAAAA+AGG + Chr3:79017206-79017225 None:intergenic 55.0%
GCTGGGGTTGCTCTTGGATA+AGG - Chr3:79016657-79016676 MsG0380016089.01.T01:intron 55.0%
GGCGAGAGTGGAGAATTTCC+TGG + Chr3:79014679-79014698 None:intergenic 55.0%
GGTCCTCTCTAAGTCCTTGC+TGG - Chr3:79016639-79016658 MsG0380016089.01.T01:intron 55.0%
GTGTGCGCATGTGATGGCAA+TGG - Chr3:79015959-79015978 MsG0380016089.01.T01:intron 55.0%
GTTGCAGTGTGCGCATGTGA+TGG - Chr3:79015953-79015972 MsG0380016089.01.T01:intron 55.0%
! CTAGTGGGTGAAGGCTATGG+GGG - Chr3:79016336-79016355 MsG0380016089.01.T01:intron 55.0%
! GCTAGTGGGTGAAGGCTATG+GGG - Chr3:79016335-79016354 MsG0380016089.01.T01:intron 55.0%
! TTTTCCTTGAAGGCGGGGAG+TGG - Chr3:79017206-79017225 MsG0380016089.01.T01:CDS 55.0%
GTCCTTGCTGGGGTTGCTCT+TGG - Chr3:79016651-79016670 MsG0380016089.01.T01:intron 60.0%
TCGGTCTTGGCGGTCGGAAT+CGG + Chr3:79014736-79014755 None:intergenic 60.0%
! GAGTGGTGGGACCTATGTGC+TGG - Chr3:79017223-79017242 MsG0380016089.01.T01:CDS 60.0%
CCTTGAAGGCGGGGAGTGGT+GGG - Chr3:79017210-79017229 MsG0380016089.01.T01:CDS 65.0%
TCCTTGAAGGCGGGGAGTGG+TGG - Chr3:79017209-79017228 MsG0380016089.01.T01:CDS 65.0%
TTGGGAAGGGCTCGTGGCGA+CGG + Chr3:79014700-79014719 None:intergenic 65.0%
AATCGGAGACCGCGGCGGGT+TGG + Chr3:79014719-79014738 None:intergenic 70.0%
CCCACCACTCCCCGCCTTCA+AGG + Chr3:79017213-79017232 None:intergenic 70.0%
GCGGTCGGAATCGGAGACCG+CGG + Chr3:79014727-79014746 None:intergenic 70.0%
GTCGGAATCGGAGACCGCGG+CGG + Chr3:79014724-79014743 None:intergenic 70.0%
TCGGAATCGGAGACCGCGGC+GGG + Chr3:79014723-79014742 None:intergenic 70.0%
! ATCGGAGACCGCGGCGGGTT+GGG + Chr3:79014718-79014737 None:intergenic 70.0%
!! AGACCGCGGCGGGTTGGGAA+GGG + Chr3:79014713-79014732 None:intergenic 70.0%
GAGCCCTTCCCAACCCGCCG+CGG - Chr3:79014707-79014726 MsG0380016089.01.T01:intron 75.0%
GCTCGTGGCGACGGCGAGAG+TGG + Chr3:79014691-79014710 None:intergenic 75.0%
!! GAGACCGCGGCGGGTTGGGA+AGG + Chr3:79014714-79014733 None:intergenic 75.0%
!! GGCGGGTTGGGAAGGGCTCG+TGG + Chr3:79014706-79014725 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
Chr3 gene 79014543 79017387 79014543 ID=MsG0380016089.01;Name=MsG0380016089.01
Chr3 mRNA 79014543 79017387 79014543 ID=MsG0380016089.01.T01;Parent=MsG0380016089.01;Name=MsG0380016089.01.T01;_AED=0.43;_eAED=0.46;_QI=0|0|0|1|1|1|3|0|205
Chr3 exon 79017121 79017387 79017121 ID=MsG0380016089.01.T01:exon:17719;Parent=MsG0380016089.01.T01
Chr3 exon 79015790 79015970 79015790 ID=MsG0380016089.01.T01:exon:17718;Parent=MsG0380016089.01.T01
Chr3 exon 79014543 79014712 79014543 ID=MsG0380016089.01.T01:exon:17717;Parent=MsG0380016089.01.T01
Chr3 CDS 79017121 79017387 79017121 ID=MsG0380016089.01.T01:cds;Parent=MsG0380016089.01.T01
Chr3 CDS 79015790 79015970 79015790 ID=MsG0380016089.01.T01:cds;Parent=MsG0380016089.01.T01
Chr3 CDS 79014543 79014712 79014543 ID=MsG0380016089.01.T01:cds;Parent=MsG0380016089.01.T01
Gene Sequence

>MsG0380016089.01.T01

ATGGCTTCTACTCTTTTCACCGTTCCCATGGCTACAACACTTTCATCTTCCATTCATTTCCTTAAACTCCATACCCCTCTTTCTTTTTCTTTTCCTTTTCGTTCTCTTCGTTCTCCAACTCCATCCTTCTTCACCAGGAAATTCTCCACTCTCGCCGTCGCCACGAGCCCTTCCCAACCCGCCGCGGTCTCCGATTCCGACCGCCAAGACCGAATTGTTCTCCCTACTAATGAATCGTCCAACACCCTTCTCAGAATTCGTCACACGTGTGCGCATGTGATGGCAATGGCCGTTCAAAAGCTTTACCCTCAAGCAAAAGTCACAATCGGGCCTTGGATAGAAAATGGGTTTTATTATGACTTTGATATGGAGCCTTTGACAGATAAAGATTTGAAGAGAATCAAGAAAGAGATGGTAAGTCCTTTATATTTGGTAGTTATGTATGTTTGCGGGGAGTGGTGGGACCTATGTGCTGGACCTCATGTTGAATCTACTGGAAATATCAAAAGAAATGCCGTTGAACTTGAGTCTATTGCTGGTGCTTACTGGAGAGGAGATGAAAAGAAACCAATGCTGCAAAGGATATATGGTACTGCATGGGAGACTGAAGAGCAGTGA

Protein sequence

>MsG0380016089.01.T01

MASTLFTVPMATTLSSSIHFLKLHTPLSFSFPFRSLRSPTPSFFTRKFSTLAVATSPSQPAAVSDSDRQDRIVLPTNESSNTLLRIRHTCAHVMAMAVQKLYPQAKVTIGPWIENGFYYDFDMEPLTDKDLKRIKKEMVSPLYLVVMYVCGEWWDLCAGPHVESTGNIKRNAVELESIAGAYWRGDEKKPMLQRIYGTAWETEEQ*