AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180003372.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180003372.01.T01 MTR_1g058490 80.969 289 45 3 1 280 1 288 2.63e-162 462
MsG0180003372.01.T01 MTR_7g105320 50.613 326 132 9 1 302 2 322 1.81e-83 261
MsG0180003372.01.T01 MTR_1g060460 63.758 149 36 2 1 149 27 157 1.96e-53 177
MsG0180003372.01.T01 MTR_2g086920 38.951 267 144 5 17 269 6 267 8.74e-51 176
MsG0180003372.01.T01 MTR_4g052460 40.493 284 149 7 19 282 24 307 1.08e-47 168
MsG0180003372.01.T01 MTR_3g466350 36.667 270 151 11 16 267 6 273 1.19e-35 134
MsG0180003372.01.T01 MTR_3g466280 31.522 276 142 9 14 267 4 254 3.14e-29 115
MsG0180003372.01.T01 MTR_8g021080 31.481 270 153 8 16 267 4 259 5.02e-29 115
MsG0180003372.01.T01 MTR_1g072360 29.595 321 158 11 11 266 4 321 7.47e-26 108
MsG0180003372.01.T01 MTR_1g072360 29.595 321 158 11 11 266 24 341 2.14e-25 107
MsG0180003372.01.T01 MTR_8g022730 31.159 276 160 9 16 267 4 273 4.44e-25 104
MsG0180003372.01.T01 MTR_3g466300 35.227 176 97 6 16 185 6 170 1.61e-18 85.1
MsG0180003372.01.T01 MTR_3g466330 35.882 170 88 8 16 177 6 162 6.70e-17 80.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180003372.01.T01 AT2G36090 47.925 265 106 7 13 266 14 257 1.44e-64 211
MsG0180003372.01.T01 AT3G44326 43.056 288 141 5 17 281 22 309 9.69e-63 208
MsG0180003372.01.T01 AT2G27310 45.588 272 126 7 15 266 11 280 1.00e-59 199

Find 161 sgRNAs with CRISPR-Local

Find 365 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCATCGTTTCAGCTTCTTC+TGG 0.241942 1:-61296292 None:intergenic
TAGTTTGCAAGTGGAGGATA+TGG 0.265067 1:+61293967 MsG0180003372.01.T01:CDS
TTCGATTAGCTGGGCGATTT+GGG 0.269093 1:-61296317 None:intergenic
GCTATCATGATTTGCATTTC+CGG 0.272726 1:+61293251 None:intergenic
GCCCTGCTTGCAGCCCGTTC+TGG 0.277152 1:-61296863 None:intergenic
AGGTTTATCTGGTTTAGTTT+TGG 0.277317 1:-61296167 None:intergenic
CCTCGTTTCTTTCGATTAGC+TGG 0.281691 1:-61296327 None:intergenic
GGAGAAGATGGAAGGGAATC+GGG 0.283390 1:+61294050 MsG0180003372.01.T01:CDS
TTTCGATTAGCTGGGCGATT+TGG 0.285157 1:-61296318 None:intergenic
AAAGCTAAATGCTACATTAA+AGG 0.285465 1:+61296942 MsG0180003372.01.T01:CDS
TCGTAGAACGCTTTACGATT+TGG 0.286324 1:+61296195 MsG0180003372.01.T01:CDS
TCTCCAAGTTCTGTTGTTGT+TGG 0.299569 1:-61296375 None:intergenic
AAGTTCCCTGATCTCTGTTC+GGG 0.305198 1:-61297049 None:intergenic
TCTGTTCCGACGAACATCTC+TGG 0.313553 1:+61293405 MsG0180003372.01.T01:CDS
TGGAGGTGGTGCAGCGGAGT+GGG 0.320619 1:+61293828 MsG0180003372.01.T01:CDS
AGGAGAAGATGGAAGGGAAT+CGG 0.338137 1:+61294049 MsG0180003372.01.T01:CDS
CTACGATTCAGAGGTTTATC+TGG 0.339369 1:-61296178 None:intergenic
AGCGGCACATCGGGACAAAC+AGG 0.347960 1:+61297006 MsG0180003372.01.T01:CDS
GATGTTGGCGGAGGAGAATA+TGG 0.349074 1:+61293931 MsG0180003372.01.T01:CDS
GAAACGGAGAGCACCGGAAC+CGG 0.364838 1:-61293664 None:intergenic
CGAAAGAAACGAGGCTCTAC+AGG 0.372798 1:+61296336 MsG0180003372.01.T01:CDS
CGGGGAAGAAGAAGGTTATA+TGG 0.379395 1:+61294069 MsG0180003372.01.T01:CDS
AAAGTTCCCTGATCTCTGTT+CGG 0.380592 1:-61297050 None:intergenic
GTGGAGGTGGTGCAGCGGAG+TGG 0.384568 1:+61293827 MsG0180003372.01.T01:CDS
CGTGAATGGAAGGGATAGTT+TGG 0.385547 1:+61294000 MsG0180003372.01.T01:CDS
GGAGGTGGTGCAGCGGAGTG+GGG 0.386877 1:+61293829 MsG0180003372.01.T01:CDS
TGTCCCGATGTGCCGCTCCT+TGG 0.388919 1:-61297000 None:intergenic
AAGCCAAGGAGCGGCACATC+GGG 0.389898 1:+61296997 MsG0180003372.01.T01:CDS
CGTTGGAAGGTAGGAGAAGA+TGG 0.393190 1:+61294038 MsG0180003372.01.T01:CDS
AAACCGTGACCACCCGGTTC+CGG 0.395240 1:+61293651 MsG0180003372.01.T01:CDS
CTGTTTGTAACGGTGGTTTA+CGG 0.400997 1:+61293863 MsG0180003372.01.T01:CDS
GGTTTCAGTTTCAACTACTT+TGG 0.406461 1:-61293633 None:intergenic
TTCCAGAACGGGCTGCAAGC+AGG 0.409593 1:+61296861 MsG0180003372.01.T01:CDS
GTGAATCGCAGACTGCGATT+TGG 0.412162 1:+61296140 MsG0180003372.01.T01:CDS
TTTAATGTAGCATTTAGCTT+TGG 0.416139 1:-61296940 None:intergenic
CAAGTTCTGTTGTTGTTGGA+TGG 0.428855 1:-61296371 None:intergenic
GGGAGGAGTTGAGGCTGAGC+TGG 0.438878 1:+61293750 MsG0180003372.01.T01:CDS
TGAGCGAGGGATTCATTGAA+TGG 0.444982 1:-61296885 None:intergenic
ATCCAGGGGTTTCTTTGTGA+AGG 0.445277 1:-61296222 None:intergenic
AACGGCTGAGATTAAACTTA+GGG 0.445872 1:-61293579 None:intergenic
TCTAACGTGAGGTGAGATCC+AGG 0.446314 1:-61296238 None:intergenic
CGGAACAGAGAGAGTTGAGT+TGG 0.450504 1:-61293391 None:intergenic
CACATACTCACACGCCTTGA+CGG 0.456412 1:+61293335 MsG0180003372.01.T01:CDS
CATCCAACAACAACAGAACT+TGG 0.457088 1:+61296372 MsG0180003372.01.T01:CDS
TCACATCCTTGTTATCTAGT+AGG 0.459978 1:-61293694 None:intergenic
GTCGAGTGGCAAGGCGGTGG+AGG 0.460504 1:+61293811 MsG0180003372.01.T01:CDS
CTCGTTTCTTTCGATTAGCT+GGG 0.460665 1:-61296326 None:intergenic
CATAATTTCTTCCATGGAGT+TGG 0.460929 1:-61296916 None:intergenic
TTCGAAGAACATTCCAGAAC+GGG 0.461777 1:+61296850 MsG0180003372.01.T01:CDS
GAGTGGCAAGGCGGTGGAGG+TGG 0.463232 1:+61293814 MsG0180003372.01.T01:CDS
AAACGAGGCTCTACAGGCTT+CGG 0.471233 1:+61296342 MsG0180003372.01.T01:CDS
CAACGGCTGAGATTAAACTT+AGG 0.475204 1:-61293580 None:intergenic
GGAGAATATGGAGGTTAGAG+AGG 0.476479 1:+61293943 MsG0180003372.01.T01:CDS
TCCAGAACGGGCTGCAAGCA+GGG 0.486406 1:+61296862 MsG0180003372.01.T01:CDS
TTTGGACATAATTTCTTCCA+TGG 0.488823 1:-61296922 None:intergenic
TATCTCTTCTCATCATCAAA+AGG 0.490622 1:+61293529 MsG0180003372.01.T01:CDS
ATTTCTTCCATGGAGTTGGC+AGG 0.491856 1:-61296912 None:intergenic
GAGAAGATGGAAGGGAATCG+GGG 0.492779 1:+61294051 MsG0180003372.01.T01:CDS
CTGAGATTAAACTTAGGGTT+CGG 0.493437 1:-61293574 None:intergenic
GAGAGAGTTGAGTTGGGAGC+AGG 0.498381 1:-61293384 None:intergenic
AGTACAGTTGGCGCCGTCTG+TGG 0.498795 1:+61296087 MsG0180003372.01.T01:intron
TAGAGAGGTTAGTTTGCAAG+TGG 0.502224 1:+61293958 MsG0180003372.01.T01:CDS
AAGCGAGAGCAGCGCCGTCA+AGG 0.502843 1:-61293349 None:intergenic
CGGAGAACGTTGAGATTACA+TGG 0.505020 1:-61293478 None:intergenic
GAAGCCAAGGAGCGGCACAT+CGG 0.505272 1:+61296996 MsG0180003372.01.T01:CDS
GGTGGTGCAGCGGAGTGGGG+AGG 0.507878 1:+61293832 MsG0180003372.01.T01:CDS
TCCAGGGGTTTCTTTGTGAA+GGG 0.509477 1:-61296221 None:intergenic
AGAGGTTAGTTTGCAAGTGG+AGG 0.510549 1:+61293961 MsG0180003372.01.T01:CDS
TTCAGCCTCCTCTGATTCGC+CGG 0.511615 1:-61293270 None:intergenic
GTTATGGCCTTGTGTTCAGT+GGG 0.512374 1:-61297114 None:intergenic
TTGGAGAAGGCGGAGAAGGC+AGG 0.512432 1:+61296391 MsG0180003372.01.T01:CDS
GGAACAGAGAGAGTTGAGTT+GGG 0.512955 1:-61293390 None:intergenic
GGAAGGTAGGAGAAGATGGA+AGG 0.515160 1:+61294042 MsG0180003372.01.T01:CDS
CTGTTCCGACGAACATCTCT+GGG 0.515288 1:+61293406 MsG0180003372.01.T01:CDS
GTGCCGCTCCTTGGCTTCTG+TGG 0.517934 1:-61296991 None:intergenic
ATGGATGGAAAACACGTGAA+TGG 0.517970 1:+61293986 MsG0180003372.01.T01:CDS
AAACGGAGAGCACCGGAACC+GGG 0.519936 1:-61293663 None:intergenic
AAGGGAATCGGGGAAGAAGA+AGG 0.521248 1:+61294061 MsG0180003372.01.T01:CDS
TGCGTAAGGCGTTGGAAGGT+AGG 0.522219 1:+61294029 MsG0180003372.01.T01:CDS
GAAGAAGACCACAGAAGCCA+AGG 0.522951 1:+61296983 MsG0180003372.01.T01:CDS
CGTGTCGAGTGGCAAGGCGG+TGG 0.531169 1:+61293808 MsG0180003372.01.T01:CDS
GAACTTGGAGAAGGCGGAGA+AGG 0.532564 1:+61296387 MsG0180003372.01.T01:CDS
TTGCATTATGTCGTCGTGGA+CGG 0.534628 1:-61293309 None:intergenic
AACAGCGACGGCGACGGAGG+TGG 0.537963 1:+61293889 MsG0180003372.01.T01:CDS
TTCACCGCTCGTTGACTCAC+CGG 0.540056 1:-61293785 None:intergenic
TTGGCGCCGTCTGTGGGAAG+AGG 0.544348 1:+61296094 MsG0180003372.01.T01:CDS
AGGCGGTGGAGGTGGTGCAG+CGG 0.545534 1:+61293822 MsG0180003372.01.T01:CDS
TCAGCCTCAACTCCTCCCCT+AGG 0.546631 1:-61293745 None:intergenic
GCGAACACGTGGCGTGTTGG+TGG 0.547964 1:-61293456 None:intergenic
GAAGGTAGGAGAAGATGGAA+GGG 0.548069 1:+61294043 MsG0180003372.01.T01:CDS
TCTAGTAGGTCAACACGAAA+CGG 0.548809 1:-61293680 None:intergenic
GCACCGGAACCGGGTGGTCA+CGG 0.552377 1:-61293654 None:intergenic
TTGCATTTCCGGCGAATCAG+AGG 0.552766 1:+61293262 MsG0180003372.01.T01:CDS
TTGCAAGTGGAGGATATGGA+TGG 0.553223 1:+61293971 MsG0180003372.01.T01:CDS
CAACACGAAACGGAGAGCAC+CGG 0.553484 1:-61293670 None:intergenic
ATGGAAAACACGTGAATGGA+AGG 0.557600 1:+61293990 MsG0180003372.01.T01:CDS
GAAGAAAGAGCGGGAGCCAT+CGG 0.558224 1:-61293498 None:intergenic
GTGTAGTGTGGTGGTGATGT+TGG 0.561708 1:+61293916 MsG0180003372.01.T01:CDS
ACACGTGGCGTGTTGGTGGA+AGG 0.562808 1:-61293452 None:intergenic
TTGGTGGTGATGAAAACCTA+GGG 0.571174 1:+61293729 MsG0180003372.01.T01:CDS
ACCCTTCACAAAGAAACCCC+TGG 0.571283 1:+61296220 MsG0180003372.01.T01:CDS
TGTGGTGGTGATGTTGGCGG+AGG 0.574599 1:+61293922 MsG0180003372.01.T01:CDS
GAGTTGGGAGCAGGTGCTTG+CGG 0.574852 1:-61293375 None:intergenic
CATTTCCGGCGAATCAGAGG+AGG 0.576009 1:+61293265 MsG0180003372.01.T01:CDS
GTACAGTTGGCGCCGTCTGT+GGG 0.576044 1:+61296088 MsG0180003372.01.T01:intron
TAGTGTGGTGGTGATGTTGG+CGG 0.576928 1:+61293919 MsG0180003372.01.T01:CDS
AAACTGAAACCGTGACCACC+CGG 0.581030 1:+61293645 MsG0180003372.01.T01:CDS
AAAACCTAGGGGAGGAGTTG+AGG 0.581253 1:+61293741 MsG0180003372.01.T01:CDS
GTCGTGGACGGCGGAGAATG+TGG 0.582153 1:-61293297 None:intergenic
AGAGTCTGCGAAGAAAGAGC+GGG 0.584331 1:-61293507 None:intergenic
GTTGGCAGGTTTCTGAGCGA+GGG 0.585077 1:-61296898 None:intergenic
GGTGAAGTTGCTGTTTGTAA+CGG 0.587952 1:+61293853 MsG0180003372.01.T01:CDS
TCAGAAACCTGCCAACTCCA+TGG 0.589170 1:+61296905 MsG0180003372.01.T01:CDS
CGGAGAAACAGCGACGGCGA+CGG 0.589608 1:+61293883 MsG0180003372.01.T01:CDS
AGTTGGCAGGTTTCTGAGCG+AGG 0.592487 1:-61296899 None:intergenic
TTGGGAGCAGGTGCTTGCGG+CGG 0.592620 1:-61293372 None:intergenic
TAAAGCGTTCTACGATTCAG+AGG 0.593212 1:-61296187 None:intergenic
AGAAACAGCGACGGCGACGG+AGG 0.596172 1:+61293886 MsG0180003372.01.T01:CDS
GCGATTCACAAACTTTGTCA+AGG 0.596225 1:-61296126 None:intergenic
TAGAGTCTGCGAAGAAAGAG+CGG 0.597944 1:-61293508 None:intergenic
GGTGAACGTGTCGAGTGGCA+AGG 0.607475 1:+61293802 MsG0180003372.01.T01:CDS
GTAATCTCAACGTTCTCCGA+TGG 0.609849 1:+61293482 MsG0180003372.01.T01:CDS
ATGGCGAACACGTGGCGTGT+TGG 0.612938 1:-61293459 None:intergenic
GCGGCACATCGGGACAAACA+GGG 0.613161 1:+61297007 MsG0180003372.01.T01:CDS
CATTATGTCGTCGTGGACGG+CGG 0.616775 1:-61293306 None:intergenic
CTGGAGTTGCCATATCGATG+AGG 0.617617 1:-61296273 None:intergenic
GTTGGTGGTGATGAAAACCT+AGG 0.622095 1:+61293728 MsG0180003372.01.T01:CDS
TAACGTGAGGTGAGATCCAG+GGG 0.624095 1:-61296236 None:intergenic
GATGTGATCAAATATCCAGT+TGG 0.627239 1:+61293710 MsG0180003372.01.T01:CDS
CGAGCGGTGAACGTGTCGAG+TGG 0.630914 1:+61293797 MsG0180003372.01.T01:CDS
CTAACGTGAGGTGAGATCCA+GGG 0.637259 1:-61296237 None:intergenic
GTGATCAAATATCCAGTTGG+TGG 0.640023 1:+61293713 MsG0180003372.01.T01:CDS
ATTCGAAGAACATTCCAGAA+CGG 0.642552 1:+61296849 MsG0180003372.01.T01:CDS
ACAACAGAACTTGGAGAAGG+CGG 0.646762 1:+61296381 MsG0180003372.01.T01:CDS
TGTTGACCTACTAGATAACA+AGG 0.646998 1:+61293688 MsG0180003372.01.T01:CDS
GAAGTTGCTGTTTGTAACGG+TGG 0.653372 1:+61293856 MsG0180003372.01.T01:CDS
ACAACAACAGAACTTGGAGA+AGG 0.655040 1:+61296378 MsG0180003372.01.T01:CDS
ATCGGGACAAACAGGGACCG+AGG 0.655903 1:+61297014 MsG0180003372.01.T01:CDS
GTTGGCGGAGGAGAATATGG+AGG 0.656704 1:+61293934 MsG0180003372.01.T01:CDS
CCAGCTAATCGAAAGAAACG+AGG 0.658079 1:+61296327 MsG0180003372.01.T01:CDS
GTTTGCCCAGAGATGTTCGT+CGG 0.658971 1:-61293411 None:intergenic
TGGAAAACACGTGAATGGAA+GGG 0.659109 1:+61293991 MsG0180003372.01.T01:CDS
AGACCACAGAAGCCAAGGAG+CGG 0.660938 1:+61296988 MsG0180003372.01.T01:CDS
CTCACGGTGGAAAATATCAA+CGG 0.662771 1:-61293597 None:intergenic
GGAGGTGGCGTTGTGTAGTG+TGG 0.663867 1:+61293904 MsG0180003372.01.T01:CDS
GAGATTACATGGCGAACACG+TGG 0.665268 1:-61293467 None:intergenic
GTTCCCTGATCTCTGTTCGG+GGG 0.666266 1:-61297047 None:intergenic
TAAATGCTACATTAAAGGCG+AGG 0.668715 1:+61296947 MsG0180003372.01.T01:CDS
AGTTCCCTGATCTCTGTTCG+GGG 0.671372 1:-61297048 None:intergenic
TGGAGAAAACTAGACCCTCA+CGG 0.682179 1:-61293613 None:intergenic
TGGTGATGAAAACCTAGGGG+AGG 0.688286 1:+61293733 MsG0180003372.01.T01:CDS
CAAACGCATGCTATTCTACG+TGG 0.694571 1:+61293429 MsG0180003372.01.T01:CDS
GGTGGCGTTGTGTAGTGTGG+TGG 0.695299 1:+61293907 MsG0180003372.01.T01:CDS
GAGTTTGCATTATGTCGTCG+TGG 0.722370 1:-61293313 None:intergenic
CGATCCGGTGAGTCAACGAG+CGG 0.722539 1:+61293781 MsG0180003372.01.T01:CDS
CGGAGAGCACCGGAACCGGG+TGG 0.727565 1:-61293660 None:intergenic
GAACGTGTCGAGTGGCAAGG+CGG 0.733374 1:+61293805 MsG0180003372.01.T01:CDS
GGTTTACGGAGAAACAGCGA+CGG 0.737765 1:+61293877 MsG0180003372.01.T01:CDS
TGGTGGTGATGAAAACCTAG+GGG 0.760068 1:+61293730 MsG0180003372.01.T01:CDS
TTATGGCCTTGTGTTCAGTG+GGG 0.777800 1:-61297113 None:intergenic
AGAAAACTAGACCCTCACGG+TGG 0.791242 1:-61293610 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATTATTTATAAATAAAAA+TGG + Chr1:61294334-61294353 MsG0180003372.01.T01:intron 0.0%
!! AAATTTAAATAGAGAATTAA+TGG - Chr1:61295333-61295352 None:intergenic 10.0%
!! TAATTCTCTATTTAAATTTA+AGG + Chr1:61295334-61295353 MsG0180003372.01.T01:intron 10.0%
!! AAAGTACAATAATCATATTA+TGG - Chr1:61296062-61296081 None:intergenic 15.0%
!! AAATATTATTCTTCTTTCTA+CGG + Chr1:61294879-61294898 MsG0180003372.01.T01:intron 15.0%
!! TAAATAAAGAAATTTAACCT+TGG - Chr1:61295476-61295495 None:intergenic 15.0%
!!! AAACATAGTTATTGTAATTT+TGG + Chr1:61294467-61294486 MsG0180003372.01.T01:intron 15.0%
!!! AACATAGTTATTGTAATTTT+GGG + Chr1:61294468-61294487 MsG0180003372.01.T01:intron 15.0%
!! AATAACCAAACAAATTGAAA+TGG + Chr1:61294541-61294560 MsG0180003372.01.T01:intron 20.0%
!!! AAAAAATTAGTTGATGTCTA+TGG + Chr1:61294362-61294381 MsG0180003372.01.T01:intron 20.0%
!!! AGACATCAACTAATTTTTTA+TGG - Chr1:61294361-61294380 None:intergenic 20.0%
!!! TATTATGGTTTGTATTGTAT+TGG - Chr1:61296047-61296066 None:intergenic 20.0%
! AAAGCTAAATGCTACATTAA+AGG + Chr1:61296942-61296961 MsG0180003372.01.T01:CDS 25.0%
! AATAGACTATAAGAACAACA+TGG + Chr1:61294966-61294985 MsG0180003372.01.T01:intron 25.0%
! ATAACTGATTATGAAGAATG+TGG - Chr1:61296662-61296681 None:intergenic 25.0%
! CAAAGTTTACATGAGAAAAA+AGG - Chr1:61295580-61295599 None:intergenic 25.0%
! CAAGATAAGGATCTTAAAAT+AGG + Chr1:61295383-61295402 MsG0180003372.01.T01:intron 25.0%
! GATACTTAAGAGACAATAAT+AGG - Chr1:61294858-61294877 None:intergenic 25.0%
! TAACTGATTATGAAGAATGT+GGG - Chr1:61296661-61296680 None:intergenic 25.0%
! TGACATATGTAAAATCAACT+AGG - Chr1:61295684-61295703 None:intergenic 25.0%
! TGGTTATTAGACAACAAAAA+AGG - Chr1:61294529-61294548 None:intergenic 25.0%
!! ATAGTTATTGTAATTTTGGG+TGG + Chr1:61294471-61294490 MsG0180003372.01.T01:intron 25.0%
!! ATCAACTAGGTCAATTATTT+TGG - Chr1:61295671-61295690 None:intergenic 25.0%
!! ATCTACTTAAGTTGTTATAG+TGG - Chr1:61294298-61294317 None:intergenic 25.0%
!! TTTAATGTAGCATTTAGCTT+TGG - Chr1:61296943-61296962 None:intergenic 25.0%
ACTTTAATCCGTTTCTACTA+TGG + Chr1:61294402-61294421 MsG0180003372.01.T01:intron 30.0%
AGTTTACATGAGAAAAAAGG+TGG - Chr1:61295577-61295596 None:intergenic 30.0%
ATACACATTGTCAAACAAAG+TGG + Chr1:61295776-61295795 MsG0180003372.01.T01:intron 30.0%
ATAGGGCTAATTGAGTAATT+AGG - Chr1:61295945-61295964 None:intergenic 30.0%
CCTACTGTTCCAAAAATATT+GGG - Chr1:61294722-61294741 None:intergenic 30.0%
CGTAAAGAAGAAGAAAGAAA+GGG + Chr1:61294096-61294115 MsG0180003372.01.T01:intron 30.0%
CTACTGTTCCAAAAATATTG+GGG - Chr1:61294721-61294740 None:intergenic 30.0%
CTATATATGGATGGTTAAGT+AGG - Chr1:61295044-61295063 None:intergenic 30.0%
GTATACAAAGGGTTATGTTA+AGG - Chr1:61295184-61295203 None:intergenic 30.0%
TACTCTTAGGATACAAGATA+AGG + Chr1:61295370-61295389 MsG0180003372.01.T01:intron 30.0%
TATCTCTTCTCATCATCAAA+AGG + Chr1:61293529-61293548 MsG0180003372.01.T01:CDS 30.0%
TCCTACTGTTCCAAAAATAT+TGG - Chr1:61294723-61294742 None:intergenic 30.0%
TCGTAAAGAAGAAGAAAGAA+AGG + Chr1:61294095-61294114 MsG0180003372.01.T01:intron 30.0%
TCTCGATAACTATATATGGA+TGG - Chr1:61295053-61295072 None:intergenic 30.0%
TCTTATAGTCTATTGCTAAG+TGG - Chr1:61294960-61294979 None:intergenic 30.0%
TGATCTGAAAATTCAAGTCT+AGG + Chr1:61295153-61295172 MsG0180003372.01.T01:intron 30.0%
TGCCTAAGTAATCATAAAAC+AGG + Chr1:61295972-61295991 MsG0180003372.01.T01:intron 30.0%
TTATGAATGCACAATTTCCA+AGG + Chr1:61295456-61295475 MsG0180003372.01.T01:intron 30.0%
TTGTATTTATAGCCCTCTAT+GGG - Chr1:61295998-61296017 None:intergenic 30.0%
TTTGGACATAATTTCTTCCA+TGG - Chr1:61296925-61296944 None:intergenic 30.0%
! AAAAATATTGGGGTGTTATG+GGG - Chr1:61294711-61294730 None:intergenic 30.0%
! AAATGCTAACTTGTACTCTT+AGG + Chr1:61295357-61295376 MsG0180003372.01.T01:intron 30.0%
! AAGCTTTGACTAATGATCTT+TGG - Chr1:61295215-61295234 None:intergenic 30.0%
! AATTAATGGTTGCAAGTTGA+AGG - Chr1:61295319-61295338 None:intergenic 30.0%
! ACTCACCATTTCAATTTGTT+TGG - Chr1:61294549-61294568 None:intergenic 30.0%
! AGGAAGTGTGATAGATTTAA+GGG - Chr1:61295538-61295557 None:intergenic 30.0%
! CAAAAATATTGGGGTGTTAT+GGG - Chr1:61294712-61294731 None:intergenic 30.0%
!! AGGTTTATCTGGTTTAGTTT+TGG - Chr1:61296170-61296189 None:intergenic 30.0%
!! CATGTGTGATTTTGTTTGAA+GGG - Chr1:61294683-61294702 None:intergenic 30.0%
!! TACGGTTAACATTTTTGAGA+TGG + Chr1:61294897-61294916 MsG0180003372.01.T01:intron 30.0%
!! TAGTAGAAACGGATTAAAGT+AGG - Chr1:61294402-61294421 None:intergenic 30.0%
!! TAGTTTGGTAATTTTGCGTA+AGG + Chr1:61294015-61294034 MsG0180003372.01.T01:CDS 30.0%
!!! TTCTGGTTTAAAAGGGATTT+TGG - Chr1:61295078-61295097 None:intergenic 30.0%
AAAGAAGAAGAAAGAAAGGG+AGG + Chr1:61294099-61294118 MsG0180003372.01.T01:intron 35.0%
AAAGGGAGGAAAGAAAGAAA+AGG + Chr1:61294113-61294132 MsG0180003372.01.T01:intron 35.0%
AACGGCTGAGATTAAACTTA+GGG - Chr1:61293582-61293601 None:intergenic 35.0%
AAGGGAGGAAAGAAAGAAAA+GGG + Chr1:61294114-61294133 MsG0180003372.01.T01:intron 35.0%
ACAGCATGATAAACATTCAC+TGG + Chr1:61295111-61295130 MsG0180003372.01.T01:intron 35.0%
AGAAAATTGCAGTTCGGATA+TGG - Chr1:61295638-61295657 None:intergenic 35.0%
AGAGAAAAACCTCATCGATA+TGG + Chr1:61296264-61296283 MsG0180003372.01.T01:CDS 35.0%
AGTGAATGTTTATCATGCTG+TGG - Chr1:61295112-61295131 None:intergenic 35.0%
ATTCGAAGAACATTCCAGAA+CGG + Chr1:61296849-61296868 MsG0180003372.01.T01:CDS 35.0%
CATAATTTCTTCCATGGAGT+TGG - Chr1:61296919-61296938 None:intergenic 35.0%
CTGAGATTAAACTTAGGGTT+CGG - Chr1:61293577-61293596 None:intergenic 35.0%
GACAGTAGAAAATTGCAGTT+CGG - Chr1:61295644-61295663 None:intergenic 35.0%
GATATGATGTGTTTGCTTAC+CGG + Chr1:61294151-61294170 MsG0180003372.01.T01:intron 35.0%
GATGTGATCAAATATCCAGT+TGG + Chr1:61293710-61293729 MsG0180003372.01.T01:CDS 35.0%
GGATCAAAGTTTACATAGTG+TGG - Chr1:61295282-61295301 None:intergenic 35.0%
GGCTTCTCGATAACTATATA+TGG - Chr1:61295057-61295076 None:intergenic 35.0%
GGTCCTTAGGAATATTATGA+CGG - Chr1:61295803-61295822 None:intergenic 35.0%
GGTTTCAGTTTCAACTACTT+TGG - Chr1:61293636-61293655 None:intergenic 35.0%
GTTGTATTTATAGCCCTCTA+TGG - Chr1:61295999-61296018 None:intergenic 35.0%
TAAATGCTACATTAAAGGCG+AGG + Chr1:61296947-61296966 MsG0180003372.01.T01:CDS 35.0%
TAACTTCGTAAGGATTCGTT+CGG - Chr1:61296775-61296794 None:intergenic 35.0%
TACTTAGGCAGCAAGTAATA+GGG - Chr1:61295962-61295981 None:intergenic 35.0%
TGGAGATTGGAGTATACAAA+GGG - Chr1:61295195-61295214 None:intergenic 35.0%
TGTTGACCTACTAGATAACA+AGG + Chr1:61293688-61293707 MsG0180003372.01.T01:CDS 35.0%
TTAATCCGTTTCTACTATGG+AGG + Chr1:61294405-61294424 MsG0180003372.01.T01:intron 35.0%
TTACTTAGGCAGCAAGTAAT+AGG - Chr1:61295963-61295982 None:intergenic 35.0%
TTCACTGGACAAATCAAAAG+AGG + Chr1:61295126-61295145 MsG0180003372.01.T01:intron 35.0%
TTGATCACCATTGTTATGAG+TGG - Chr1:61294766-61294785 None:intergenic 35.0%
TTGGAGATTGGAGTATACAA+AGG - Chr1:61295196-61295215 None:intergenic 35.0%
! AAAGAAAGAAAAGGGCACAA+AGG + Chr1:61294122-61294141 MsG0180003372.01.T01:intron 35.0%
! ATCGTATGATGATAACGATG+GGG - Chr1:61296503-61296522 None:intergenic 35.0%
! CAAATCAAAGAGTGCAATGA+AGG - Chr1:61294191-61294210 None:intergenic 35.0%
! CATCGTATGATGATAACGAT+GGG - Chr1:61296504-61296523 None:intergenic 35.0%
! CCAAAAATATTGGGGTGTTA+TGG - Chr1:61294713-61294732 None:intergenic 35.0%
! CCATAACACCCCAATATTTT+TGG + Chr1:61294710-61294729 MsG0180003372.01.T01:intron 35.0%
! CTTTTAAACCAGAATTGCGT+CGG + Chr1:61295084-61295103 MsG0180003372.01.T01:intron 35.0%
! GACTAATGATCTTTGGAGAT+TGG - Chr1:61295208-61295227 None:intergenic 35.0%
! GAGGAAGTGTGATAGATTTA+AGG - Chr1:61295539-61295558 None:intergenic 35.0%
! GGCCTGTTTTATGATTACTT+AGG - Chr1:61295977-61295996 None:intergenic 35.0%
! TCACATCCTTGTTATCTAGT+AGG - Chr1:61293697-61293716 None:intergenic 35.0%
! TTTTCTCTGAATCTAACGTG+AGG - Chr1:61296252-61296271 None:intergenic 35.0%
!! ACTTTTAAAAGACAGGACAG+AGG + Chr1:61297068-61297087 MsG0180003372.01.T01:CDS 35.0%
!! GACGCAATTCTGGTTTAAAA+GGG - Chr1:61295085-61295104 None:intergenic 35.0%
!! GCATGTGTGATTTTGTTTGA+AGG - Chr1:61294684-61294703 None:intergenic 35.0%
!! GTACTTTTTGCAAGTACAGT+TGG + Chr1:61296075-61296094 MsG0180003372.01.T01:intron 35.0%
!! TCAGGGAACTTTTAAAAGAC+AGG + Chr1:61297061-61297080 MsG0180003372.01.T01:CDS 35.0%
!! TGGTGGTTGATATTTTTCGA+TGG - Chr1:61296729-61296748 None:intergenic 35.0%
!!! CCCAATATTTTTGGAACAGT+AGG + Chr1:61294719-61294738 MsG0180003372.01.T01:intron 35.0%
AAAAGTGGTCAACCCTAATC+AGG + Chr1:61296822-61296841 MsG0180003372.01.T01:intron 40.0%
AAAGTTCCCTGATCTCTGTT+CGG - Chr1:61297053-61297072 None:intergenic 40.0%
ACAACAACAGAACTTGGAGA+AGG + Chr1:61296378-61296397 MsG0180003372.01.T01:CDS 40.0%
ACAGTAGGATAAGTAGTCTC+AGG + Chr1:61294734-61294753 MsG0180003372.01.T01:intron 40.0%
ATCAGCTTCTTCGTCATGTT+CGG - Chr1:61296685-61296704 None:intergenic 40.0%
ATCATAAAACAGGCCCATAG+AGG + Chr1:61295982-61296001 MsG0180003372.01.T01:intron 40.0%
ATGGAAAACACGTGAATGGA+AGG + Chr1:61293990-61294009 MsG0180003372.01.T01:CDS 40.0%
ATGGATGGAAAACACGTGAA+TGG + Chr1:61293986-61294005 MsG0180003372.01.T01:CDS 40.0%
CAACGGCTGAGATTAAACTT+AGG - Chr1:61293583-61293602 None:intergenic 40.0%
CAATAATAGGCAGTGTGTAG+AGG - Chr1:61294845-61294864 None:intergenic 40.0%
CAATGATGCTGCGATAAAAG+TGG + Chr1:61296807-61296826 MsG0180003372.01.T01:intron 40.0%
CATCCAACAACAACAGAACT+TGG + Chr1:61296372-61296391 MsG0180003372.01.T01:CDS 40.0%
CCAAAGAGAAAGAACTAGCT+AGG + Chr1:61294646-61294665 MsG0180003372.01.T01:intron 40.0%
CCATCGTTATCATCATACGA+TGG + Chr1:61296502-61296521 MsG0180003372.01.T01:intron 40.0%
CGGCTTCTATAAACAGCATA+GGG - Chr1:61295922-61295941 None:intergenic 40.0%
CTACGATTCAGAGGTTTATC+TGG - Chr1:61296181-61296200 None:intergenic 40.0%
CTACTCCTCCATAGTAGAAA+CGG - Chr1:61294413-61294432 None:intergenic 40.0%
CTCACGGTGGAAAATATCAA+CGG - Chr1:61293600-61293619 None:intergenic 40.0%
CTGTTTGTAACGGTGGTTTA+CGG + Chr1:61293863-61293882 MsG0180003372.01.T01:CDS 40.0%
CTTCGAATAGCTCCTGATTA+GGG - Chr1:61296837-61296856 None:intergenic 40.0%
CTTCTATAAACAGCATAGGG+CGG - Chr1:61295919-61295938 None:intergenic 40.0%
GCGATTCACAAACTTTGTCA+AGG - Chr1:61296129-61296148 None:intergenic 40.0%
GCTAAGTGGCTAATAGATGA+GGG - Chr1:61294946-61294965 None:intergenic 40.0%
GGACCGTCATAATATTCCTA+AGG + Chr1:61295797-61295816 MsG0180003372.01.T01:intron 40.0%
GGGCTAATTGAGTAATTAGG+CGG - Chr1:61295942-61295961 None:intergenic 40.0%
GTGATCAAATATCCAGTTGG+TGG + Chr1:61293713-61293732 MsG0180003372.01.T01:CDS 40.0%
GTTGAGACCACTCATAACAA+TGG + Chr1:61294756-61294775 MsG0180003372.01.T01:intron 40.0%
TATCGCAGCATCATTGTATC+TGG - Chr1:61296803-61296822 None:intergenic 40.0%
TCATAAAACAGGCCCATAGA+GGG + Chr1:61295983-61296002 MsG0180003372.01.T01:intron 40.0%
TCGTAGAACGCTTTACGATT+TGG + Chr1:61296195-61296214 MsG0180003372.01.T01:CDS 40.0%
TCTAGTAGGTCAACACGAAA+CGG - Chr1:61293683-61293702 None:intergenic 40.0%
TCTCCAAGTTCTGTTGTTGT+TGG - Chr1:61296378-61296397 None:intergenic 40.0%
TCTTCGAATAGCTCCTGATT+AGG - Chr1:61296838-61296857 None:intergenic 40.0%
TGCTAAGTGGCTAATAGATG+AGG - Chr1:61294947-61294966 None:intergenic 40.0%
TGGAAAACACGTGAATGGAA+GGG + Chr1:61293991-61294010 MsG0180003372.01.T01:CDS 40.0%
TTCGAAGAACATTCCAGAAC+GGG + Chr1:61296850-61296869 MsG0180003372.01.T01:CDS 40.0%
TTGATTCATGTACCATCGGA+GGG - Chr1:61296638-61296657 None:intergenic 40.0%
! CAAGTTCTGTTGTTGTTGGA+TGG - Chr1:61296374-61296393 None:intergenic 40.0%
! CCATCGTATGATGATAACGA+TGG - Chr1:61296505-61296524 None:intergenic 40.0%
! CCTAGCTAGTTCTTTCTCTT+TGG - Chr1:61294649-61294668 None:intergenic 40.0%
! CTCGTTTCTTTCGATTAGCT+GGG - Chr1:61296329-61296348 None:intergenic 40.0%
! GTTGATATTTTCCACCGTGA+GGG + Chr1:61293599-61293618 MsG0180003372.01.T01:CDS 40.0%
! TAAAGCGTTCTACGATTCAG+AGG - Chr1:61296190-61296209 None:intergenic 40.0%
! TAGTTTGCAAGTGGAGGATA+TGG + Chr1:61293967-61293986 MsG0180003372.01.T01:CDS 40.0%
! TTCGTCTAGTTCGTCATGAT+GGG - Chr1:61296419-61296438 None:intergenic 40.0%
!! CGACGCAATTCTGGTTTAAA+AGG - Chr1:61295086-61295105 None:intergenic 40.0%
!! GGTGAAGTTGCTGTTTGTAA+CGG + Chr1:61293853-61293872 MsG0180003372.01.T01:CDS 40.0%
!! TAGAGAGGTTAGTTTGCAAG+TGG + Chr1:61293958-61293977 MsG0180003372.01.T01:CDS 40.0%
!! TAGTGTGGTCTTGTGTATCA+TGG - Chr1:61295267-61295286 None:intergenic 40.0%
!! TGGGTTGATTCATGTACCAT+CGG - Chr1:61296642-61296661 None:intergenic 40.0%
!! TTGGTGGTGATGAAAACCTA+GGG + Chr1:61293729-61293748 MsG0180003372.01.T01:CDS 40.0%
AACCCTCGAGATTCTTCTCA+AGG + Chr1:61296016-61296035 MsG0180003372.01.T01:intron 45.0%
AAGTGGCTAATAGATGAGGG+AGG - Chr1:61294943-61294962 None:intergenic 45.0%
AAGTTCCCTGATCTCTGTTC+GGG - Chr1:61297052-61297071 None:intergenic 45.0%
ACAACAGAACTTGGAGAAGG+CGG + Chr1:61296381-61296400 MsG0180003372.01.T01:CDS 45.0%
AGGAGAAGATGGAAGGGAAT+CGG + Chr1:61294049-61294068 MsG0180003372.01.T01:CDS 45.0%
AGTGGCTAATAGATGAGGGA+GGG - Chr1:61294942-61294961 None:intergenic 45.0%
ATCCAGGGGTTTCTTTGTGA+AGG - Chr1:61296225-61296244 None:intergenic 45.0%
ATGCCTTGAGAAGAATCTCG+AGG - Chr1:61296022-61296041 None:intergenic 45.0%
ATTTCTTCCATGGAGTTGGC+AGG - Chr1:61296915-61296934 None:intergenic 45.0%
CAAACGCATGCTATTCTACG+TGG + Chr1:61293429-61293448 MsG0180003372.01.T01:CDS 45.0%
CCAGCTAATCGAAAGAAACG+AGG + Chr1:61296327-61296346 MsG0180003372.01.T01:CDS 45.0%
CCTCGTTTCTTTCGATTAGC+TGG - Chr1:61296330-61296349 None:intergenic 45.0%
CGGAGAACGTTGAGATTACA+TGG - Chr1:61293481-61293500 None:intergenic 45.0%
CGGGGAAGAAGAAGGTTATA+TGG + Chr1:61294069-61294088 MsG0180003372.01.T01:CDS 45.0%
CGTGAATGGAAGGGATAGTT+TGG + Chr1:61294000-61294019 MsG0180003372.01.T01:CDS 45.0%
CTCATCGTTTCAGCTTCTTC+TGG - Chr1:61296295-61296314 None:intergenic 45.0%
GAAGGTAGGAGAAGATGGAA+GGG + Chr1:61294043-61294062 MsG0180003372.01.T01:CDS 45.0%
GAGTTTGCATTATGTCGTCG+TGG - Chr1:61293316-61293335 None:intergenic 45.0%
GCGGCTTCTATAAACAGCAT+AGG - Chr1:61295923-61295942 None:intergenic 45.0%
GGAACAGAGAGAGTTGAGTT+GGG - Chr1:61293393-61293412 None:intergenic 45.0%
GGAGAATATGGAGGTTAGAG+AGG + Chr1:61293943-61293962 MsG0180003372.01.T01:CDS 45.0%
GTAATCTCAACGTTCTCCGA+TGG + Chr1:61293482-61293501 MsG0180003372.01.T01:CDS 45.0%
GTGGTGATATTGTGTGCATG+AGG - Chr1:61295558-61295577 None:intergenic 45.0%
TAGAGTCTGCGAAGAAAGAG+CGG - Chr1:61293511-61293530 None:intergenic 45.0%
TCCAGGGGTTTCTTTGTGAA+GGG - Chr1:61296224-61296243 None:intergenic 45.0%
TCTGGCGAGATAACTTCGTA+AGG - Chr1:61296785-61296804 None:intergenic 45.0%
TGAGCGAGGGATTCATTGAA+TGG - Chr1:61296888-61296907 None:intergenic 45.0%
TGCAGTTCGGATATGGTCAT+GGG - Chr1:61295631-61295650 None:intergenic 45.0%
TGCCTTGAGAAGAATCTCGA+GGG - Chr1:61296021-61296040 None:intergenic 45.0%
TGGAGAAAACTAGACCCTCA+CGG - Chr1:61293616-61293635 None:intergenic 45.0%
TTCGGATATGGTCATGGGTT+AGG - Chr1:61295626-61295645 None:intergenic 45.0%
TTGCAAGTGGAGGATATGGA+TGG + Chr1:61293971-61293990 MsG0180003372.01.T01:CDS 45.0%
TTGCAGTTCGGATATGGTCA+TGG - Chr1:61295632-61295651 None:intergenic 45.0%
TTGCATTATGTCGTCGTGGA+CGG - Chr1:61293312-61293331 None:intergenic 45.0%
! AGGTTTTCATCACCACCAAC+TGG - Chr1:61293728-61293747 None:intergenic 45.0%
! CGTTGATATTTTCCACCGTG+AGG + Chr1:61293598-61293617 MsG0180003372.01.T01:CDS 45.0%
! GAAAAGGGCACAAAGGAGAT+TGG + Chr1:61294129-61294148 MsG0180003372.01.T01:intron 45.0%
! GGTAATTTTGCGTAAGGCGT+TGG + Chr1:61294021-61294040 MsG0180003372.01.T01:CDS 45.0%
! GTTCGTCTAGTTCGTCATGA+TGG - Chr1:61296420-61296439 None:intergenic 45.0%
! GTTGATTCATGTACCATCGG+AGG - Chr1:61296639-61296658 None:intergenic 45.0%
! GTTTTACCTCTTCCCACAGA+CGG - Chr1:61296103-61296122 None:intergenic 45.0%
! TGAGTCTGGAGCCATTAGTA+CGG - Chr1:61296575-61296594 None:intergenic 45.0%
! TGGTGGTGATGAAAACCTAG+GGG + Chr1:61293730-61293749 MsG0180003372.01.T01:CDS 45.0%
! TTCGATTAGCTGGGCGATTT+GGG - Chr1:61296320-61296339 None:intergenic 45.0%
! TTTCGATTAGCTGGGCGATT+TGG - Chr1:61296321-61296340 None:intergenic 45.0%
!! AGAGGTTAGTTTGCAAGTGG+AGG + Chr1:61293961-61293980 MsG0180003372.01.T01:CDS 45.0%
!! GAAGTTGCTGTTTGTAACGG+TGG + Chr1:61293856-61293875 MsG0180003372.01.T01:CDS 45.0%
!! GAGCTGGATTTTGATCGATC+CGG + Chr1:61293766-61293785 MsG0180003372.01.T01:CDS 45.0%
!! GTTGGTGGTGATGAAAACCT+AGG + Chr1:61293728-61293747 MsG0180003372.01.T01:CDS 45.0%
!! TGTGGTCTTGTGTATCATGG+TGG - Chr1:61295264-61295283 None:intergenic 45.0%
!!! ATTTTGCGTAAGGCGTTGGA+AGG + Chr1:61294025-61294044 MsG0180003372.01.T01:CDS 45.0%
AAAACCTAGGGGAGGAGTTG+AGG + Chr1:61293741-61293760 MsG0180003372.01.T01:CDS 50.0%
AAACGAGGCTCTACAGGCTT+CGG + Chr1:61296342-61296361 MsG0180003372.01.T01:CDS 50.0%
AAACTGAAACCGTGACCACC+CGG + Chr1:61293645-61293664 MsG0180003372.01.T01:CDS 50.0%
AACCGCTTTCGGCAGAAATC+TGG + Chr1:61296449-61296468 MsG0180003372.01.T01:intron 50.0%
AAGGAGGTGATGTGTTCCAC+TGG - Chr1:61296538-61296557 None:intergenic 50.0%
AAGGGAATCGGGGAAGAAGA+AGG + Chr1:61294061-61294080 MsG0180003372.01.T01:CDS 50.0%
ACCCTAACCACAACCGCTTT+CGG + Chr1:61296438-61296457 MsG0180003372.01.T01:intron 50.0%
ACCCTTCACAAAGAAACCCC+TGG + Chr1:61296220-61296239 MsG0180003372.01.T01:CDS 50.0%
ACCGCTTTCGGCAGAAATCT+GGG + Chr1:61296450-61296469 MsG0180003372.01.T01:intron 50.0%
ACCTGAGAGACCCTTCTGAA+GGG + Chr1:61295820-61295839 MsG0180003372.01.T01:intron 50.0%
ACGCCCTTTAGACAGGCTTT+AGG + Chr1:61295867-61295886 MsG0180003372.01.T01:intron 50.0%
AGAAAACTAGACCCTCACGG+TGG - Chr1:61293613-61293632 None:intergenic 50.0%
AGAGTCTGCGAAGAAAGAGC+GGG - Chr1:61293510-61293529 None:intergenic 50.0%
AGCTTGCACTTGAGTGAGTC+TGG - Chr1:61296589-61296608 None:intergenic 50.0%
AGGAGGTGATGTGTTCCACT+GGG - Chr1:61296537-61296556 None:intergenic 50.0%
AGTTCCCTGATCTCTGTTCG+GGG - Chr1:61297051-61297070 None:intergenic 50.0%
ATTTCTGCCGAAAGCGGTTG+TGG - Chr1:61296448-61296467 None:intergenic 50.0%
CACATACTCACACGCCTTGA+CGG + Chr1:61293335-61293354 MsG0180003372.01.T01:CDS 50.0%
CGAAAGAAACGAGGCTCTAC+AGG + Chr1:61296336-61296355 MsG0180003372.01.T01:CDS 50.0%
CGCCCTTTAGACAGGCTTTA+GGG + Chr1:61295868-61295887 MsG0180003372.01.T01:intron 50.0%
CGGAACAGAGAGAGTTGAGT+TGG - Chr1:61293394-61293413 None:intergenic 50.0%
CGTTGGAAGGTAGGAGAAGA+TGG + Chr1:61294038-61294057 MsG0180003372.01.T01:CDS 50.0%
CTAACGTGAGGTGAGATCCA+GGG - Chr1:61296240-61296259 None:intergenic 50.0%
CTCACTCAAGTGCAAGCTTC+AGG + Chr1:61296591-61296610 MsG0180003372.01.T01:intron 50.0%
CTGGAGTTGCCATATCGATG+AGG - Chr1:61296276-61296295 None:intergenic 50.0%
CTGTTCCGACGAACATCTCT+GGG + Chr1:61293406-61293425 MsG0180003372.01.T01:CDS 50.0%
GAAGAAGACCACAGAAGCCA+AGG + Chr1:61296983-61297002 MsG0180003372.01.T01:CDS 50.0%
GAGAAGATGGAAGGGAATCG+GGG + Chr1:61294051-61294070 MsG0180003372.01.T01:CDS 50.0%
GAGATTACATGGCGAACACG+TGG - Chr1:61293470-61293489 None:intergenic 50.0%
GAGTGCAATGAAGGTCAACG+AGG - Chr1:61294182-61294201 None:intergenic 50.0%
GATGTTGGCGGAGGAGAATA+TGG + Chr1:61293931-61293950 MsG0180003372.01.T01:CDS 50.0%
GGAAGGTAGGAGAAGATGGA+AGG + Chr1:61294042-61294061 MsG0180003372.01.T01:CDS 50.0%
GGAGAAGATGGAAGGGAATC+GGG + Chr1:61294050-61294069 MsG0180003372.01.T01:CDS 50.0%
GGATATGTGTCGCAGTTGCA+TGG - Chr1:61294824-61294843 None:intergenic 50.0%
GGCCCTAAAGCCTGTCTAAA+GGG - Chr1:61295873-61295892 None:intergenic 50.0%
GGTTTACGGAGAAACAGCGA+CGG + Chr1:61293877-61293896 MsG0180003372.01.T01:CDS 50.0%
GTGAATCGCAGACTGCGATT+TGG + Chr1:61296140-61296159 MsG0180003372.01.T01:CDS 50.0%
GTTTGCCCAGAGATGTTCGT+CGG - Chr1:61293414-61293433 None:intergenic 50.0%
TAACGTGAGGTGAGATCCAG+GGG - Chr1:61296239-61296258 None:intergenic 50.0%
TCAGAAACCTGCCAACTCCA+TGG + Chr1:61296905-61296924 MsG0180003372.01.T01:CDS 50.0%
TCTAACGTGAGGTGAGATCC+AGG - Chr1:61296241-61296260 None:intergenic 50.0%
TCTGTTCCGACGAACATCTC+TGG + Chr1:61293405-61293424 MsG0180003372.01.T01:CDS 50.0%
TGTGTCGCAGTTGCATGGTA+TGG - Chr1:61294819-61294838 None:intergenic 50.0%
TTGCATTTCCGGCGAATCAG+AGG + Chr1:61293262-61293281 MsG0180003372.01.T01:CDS 50.0%
! CAAGTTGAAGGACCTTGGTG+CGG - Chr1:61295307-61295326 None:intergenic 50.0%
! GGACTTGAAGCCTTCTGGAA+CGG - Chr1:61296482-61296501 None:intergenic 50.0%
! GGTTGCAAGTTGAAGGACCT+TGG - Chr1:61295312-61295331 None:intergenic 50.0%
! GTGTAGTGTGGTGGTGATGT+TGG + Chr1:61293916-61293935 MsG0180003372.01.T01:CDS 50.0%
! TAGTGTGGTGGTGATGTTGG+CGG + Chr1:61293919-61293938 MsG0180003372.01.T01:CDS 50.0%
! TGGTGATGAAAACCTAGGGG+AGG + Chr1:61293733-61293752 MsG0180003372.01.T01:CDS 50.0%
!! GACTTGAAGCCTTCTGGAAC+GGG - Chr1:61296481-61296500 None:intergenic 50.0%
ACTTTGATCCCACCGCACCA+AGG + Chr1:61295292-61295311 MsG0180003372.01.T01:intron 55.0%
AGACCACAGAAGCCAAGGAG+CGG + Chr1:61296988-61297007 MsG0180003372.01.T01:CDS 55.0%
AGGACTTCGAGCCCTTCAGA+AGG - Chr1:61295834-61295853 None:intergenic 55.0%
AGTTGGCAGGTTTCTGAGCG+AGG - Chr1:61296902-61296921 None:intergenic 55.0%
CACCTCCTTCAACACGCGAA+TGG + Chr1:61296549-61296568 MsG0180003372.01.T01:intron 55.0%
CACGCGAATGGCCGTACTAA+TGG + Chr1:61296561-61296580 MsG0180003372.01.T01:intron 55.0%
CAGCCTGTTCAACATCTGCC+AGG + Chr1:61296747-61296766 MsG0180003372.01.T01:intron 55.0%
CATTATGTCGTCGTGGACGG+CGG - Chr1:61293309-61293328 None:intergenic 55.0%
CATTTCCGGCGAATCAGAGG+AGG + Chr1:61293265-61293284 MsG0180003372.01.T01:CDS 55.0%
CCCCAGATTTCTGCCGAAAG+CGG - Chr1:61296454-61296473 None:intergenic 55.0%
CCGCTTTCGGCAGAAATCTG+GGG + Chr1:61296451-61296470 MsG0180003372.01.T01:intron 55.0%
CGATGGCAAAAGTGACCCAG+TGG + Chr1:61296519-61296538 MsG0180003372.01.T01:intron 55.0%
CTCAAGTGCAAGCTTCAGGC+AGG + Chr1:61296595-61296614 MsG0180003372.01.T01:intron 55.0%
CTGGCAGATGTTGAACAGGC+TGG - Chr1:61296749-61296768 None:intergenic 55.0%
GAACTTGGAGAAGGCGGAGA+AGG + Chr1:61296387-61296406 MsG0180003372.01.T01:CDS 55.0%
GAAGAAAGAGCGGGAGCCAT+CGG - Chr1:61293501-61293520 None:intergenic 55.0%
GAAGGGTCTCTCAGGTCCTT+AGG - Chr1:61295816-61295835 None:intergenic 55.0%
GAAGGTCAACGAGGCTAGAC+CGG - Chr1:61294173-61294192 None:intergenic 55.0%
GACCTGAGAGACCCTTCTGA+AGG + Chr1:61295819-61295838 MsG0180003372.01.T01:intron 55.0%
GATGGCGACTCGCAGAAAAC+TGG - Chr1:61296711-61296730 None:intergenic 55.0%
GATGGGGACTTGAAGCCTTC+TGG - Chr1:61296487-61296506 None:intergenic 55.0%
GCAGATGTTGAACAGGCTGG+TGG - Chr1:61296746-61296765 None:intergenic 55.0%
GCCGAAAGCGGTTGTGGTTA+GGG - Chr1:61296442-61296461 None:intergenic 55.0%
GCCTTAGACGCCCTTTAGAC+AGG + Chr1:61295860-61295879 MsG0180003372.01.T01:intron 55.0%
GCTCCTGGCAGATGTTGAAC+AGG - Chr1:61296753-61296772 None:intergenic 55.0%
GGACTTCGAGCCCTTCAGAA+GGG - Chr1:61295833-61295852 None:intergenic 55.0%
GGGCCCTAAAGCCTGTCTAA+AGG - Chr1:61295874-61295893 None:intergenic 55.0%
GTAAGGATTCGTTCGGCTCC+TGG - Chr1:61296768-61296787 None:intergenic 55.0%
GTTCCCTGATCTCTGTTCGG+GGG - Chr1:61297050-61297069 None:intergenic 55.0%
GTTGGCAGGTTTCTGAGCGA+GGG - Chr1:61296901-61296920 None:intergenic 55.0%
GTTGGCGGAGGAGAATATGG+AGG + Chr1:61293934-61293953 MsG0180003372.01.T01:CDS 55.0%
TACGGCCATTCGCGTGTTGA+AGG - Chr1:61296557-61296576 None:intergenic 55.0%
TGCCGAAAGCGGTTGTGGTT+AGG - Chr1:61296443-61296462 None:intergenic 55.0%
! AGGGCGTCTAAGGCTAACAG+AGG - Chr1:61295854-61295873 None:intergenic 55.0%
! CAACACGAAACGGAGAGCAC+CGG - Chr1:61293673-61293692 None:intergenic 55.0%
! TTCAGCCTCCTCTGATTCGC+CGG - Chr1:61293273-61293292 None:intergenic 55.0%
! TTGAAGGACCTTGGTGCGGT+GGG - Chr1:61295303-61295322 None:intergenic 55.0%
!! GAGAGAGTTGAGTTGGGAGC+AGG - Chr1:61293387-61293406 None:intergenic 55.0%
!! GCCTGTCTAAAGGGCGTCTA+AGG - Chr1:61295864-61295883 None:intergenic 55.0%
!! TAGACAGGCTTTAGGGCCCT+AGG + Chr1:61295875-61295894 MsG0180003372.01.T01:intron 55.0%
!! TGCGTAAGGCGTTGGAAGGT+AGG + Chr1:61294029-61294048 MsG0180003372.01.T01:CDS 55.0%
!! TTCACCGCTCGTTGACTCAC+CGG - Chr1:61293788-61293807 None:intergenic 55.0%
AAACCGTGACCACCCGGTTC+CGG + Chr1:61293651-61293670 MsG0180003372.01.T01:CDS 60.0%
AAGCCAAGGAGCGGCACATC+GGG + Chr1:61296997-61297016 MsG0180003372.01.T01:CDS 60.0%
AGCGGCACATCGGGACAAAC+AGG + Chr1:61297006-61297025 MsG0180003372.01.T01:CDS 60.0%
AGTACAGTTGGCGCCGTCTG+TGG + Chr1:61296087-61296106 MsG0180003372.01.T01:intron 60.0%
ATCGGGACAAACAGGGACCG+AGG + Chr1:61297014-61297033 MsG0180003372.01.T01:CDS 60.0%
ATGGCGAACACGTGGCGTGT+TGG - Chr1:61293462-61293481 None:intergenic 60.0%
CGATCCGGTGAGTCAACGAG+CGG + Chr1:61293781-61293800 MsG0180003372.01.T01:CDS 60.0%
CTGCCCCCGAACAGAGATCA+GGG + Chr1:61297044-61297063 MsG0180003372.01.T01:CDS 60.0%
GAACGTGTCGAGTGGCAAGG+CGG + Chr1:61293805-61293824 MsG0180003372.01.T01:CDS 60.0%
GAAGCCAAGGAGCGGCACAT+CGG + Chr1:61296996-61297015 MsG0180003372.01.T01:CDS 60.0%
GAGTTGGGAGCAGGTGCTTG+CGG - Chr1:61293378-61293397 None:intergenic 60.0%
GCCCTTCAGAAGGGTCTCTC+AGG - Chr1:61295824-61295843 None:intergenic 60.0%
GCGGCACATCGGGACAAACA+GGG + Chr1:61297007-61297026 MsG0180003372.01.T01:CDS 60.0%
GGAGGTGGCGTTGTGTAGTG+TGG + Chr1:61293904-61293923 MsG0180003372.01.T01:CDS 60.0%
GGCCATTCGCGTGTTGAAGG+AGG - Chr1:61296554-61296573 None:intergenic 60.0%
GGCGACTCGCAGAAAACTGG+TGG - Chr1:61296708-61296727 None:intergenic 60.0%
GGTGAACGTGTCGAGTGGCA+AGG + Chr1:61293802-61293821 MsG0180003372.01.T01:CDS 60.0%
GGTGGCGTTGTGTAGTGTGG+TGG + Chr1:61293907-61293926 MsG0180003372.01.T01:CDS 60.0%
GTACAGTTGGCGCCGTCTGT+GGG + Chr1:61296088-61296107 MsG0180003372.01.T01:intron 60.0%
TAAGTGACGTCGCCCTCCGA+TGG + Chr1:61296623-61296642 MsG0180003372.01.T01:intron 60.0%
TCAGCCTCAACTCCTCCCCT+AGG - Chr1:61293748-61293767 None:intergenic 60.0%
TCGGAGGGCGACGTCACTTA+AGG - Chr1:61296623-61296642 None:intergenic 60.0%
TTGGAGAAGGCGGAGAAGGC+AGG + Chr1:61296391-61296410 MsG0180003372.01.T01:CDS 60.0%
! ACACGTGGCGTGTTGGTGGA+AGG - Chr1:61293455-61293474 None:intergenic 60.0%
! GTTGAAGGACCTTGGTGCGG+TGG - Chr1:61295304-61295323 None:intergenic 60.0%
! TGTGGTGGTGATGTTGGCGG+AGG + Chr1:61293922-61293941 MsG0180003372.01.T01:CDS 60.0%
!! AAACGGAGAGCACCGGAACC+GGG - Chr1:61293666-61293685 None:intergenic 60.0%
!! GAAACGGAGAGCACCGGAAC+CGG - Chr1:61293667-61293686 None:intergenic 60.0%
!! TCCAGAACGGGCTGCAAGCA+GGG + Chr1:61296862-61296881 MsG0180003372.01.T01:CDS 60.0%
!! TTCCAGAACGGGCTGCAAGC+AGG + Chr1:61296861-61296880 MsG0180003372.01.T01:CDS 60.0%
AAGCGAGAGCAGCGCCGTCA+AGG - Chr1:61293352-61293371 None:intergenic 65.0%
AGAAACAGCGACGGCGACGG+AGG + Chr1:61293886-61293905 MsG0180003372.01.T01:CDS 65.0%
AGCATAGGGCGGCGTCACGA+GGG - Chr1:61295908-61295927 None:intergenic 65.0%
CCTGATCTCTGTTCGGGGGC+AGG - Chr1:61297046-61297065 None:intergenic 65.0%
CCTGCCCCCGAACAGAGATC+AGG + Chr1:61297043-61297062 MsG0180003372.01.T01:CDS 65.0%
CGAGCGGTGAACGTGTCGAG+TGG + Chr1:61293797-61293816 MsG0180003372.01.T01:CDS 65.0%
CGGAGAAACAGCGACGGCGA+CGG + Chr1:61293883-61293902 MsG0180003372.01.T01:CDS 65.0%
GCGAACACGTGGCGTGTTGG+TGG - Chr1:61293459-61293478 None:intergenic 65.0%
GGGAGGAGTTGAGGCTGAGC+TGG + Chr1:61293750-61293769 MsG0180003372.01.T01:CDS 65.0%
GTCGTGGACGGCGGAGAATG+TGG - Chr1:61293300-61293319 None:intergenic 65.0%
TCGGGGGCAGGTAGTAGCCT+CGG - Chr1:61297034-61297053 None:intergenic 65.0%
TGGAGGTGGTGCAGCGGAGT+GGG + Chr1:61293828-61293847 MsG0180003372.01.T01:CDS 65.0%
TTGGCGCCGTCTGTGGGAAG+AGG + Chr1:61296094-61296113 MsG0180003372.01.T01:CDS 65.0%
TTGGGAGCAGGTGCTTGCGG+CGG - Chr1:61293375-61293394 None:intergenic 65.0%
! GTGCCGCTCCTTGGCTTCTG+TGG - Chr1:61296994-61297013 None:intergenic 65.0%
! TGTCCCGATGTGCCGCTCCT+TGG - Chr1:61297003-61297022 None:intergenic 65.0%
!! CTGTGGCGCCGACGCAATTC+TGG - Chr1:61295095-61295114 None:intergenic 65.0%
AACAGCGACGGCGACGGAGG+TGG + Chr1:61293889-61293908 MsG0180003372.01.T01:CDS 70.0%
AGGCGGTGGAGGTGGTGCAG+CGG + Chr1:61293822-61293841 MsG0180003372.01.T01:CDS 70.0%
CAGCATAGGGCGGCGTCACG+AGG - Chr1:61295909-61295928 None:intergenic 70.0%
CATAGGGCGGCGTCACGAGG+GGG - Chr1:61295906-61295925 None:intergenic 70.0%
CGTGTCGAGTGGCAAGGCGG+TGG + Chr1:61293808-61293827 MsG0180003372.01.T01:CDS 70.0%
GAGTGGCAAGGCGGTGGAGG+TGG + Chr1:61293814-61293833 MsG0180003372.01.T01:CDS 70.0%
GCACCGGAACCGGGTGGTCA+CGG - Chr1:61293657-61293676 None:intergenic 70.0%
GCATAGGGCGGCGTCACGAG+GGG - Chr1:61295907-61295926 None:intergenic 70.0%
GCCCTGCTTGCAGCCCGTTC+TGG - Chr1:61296866-61296885 None:intergenic 70.0%
GGAGGTGGTGCAGCGGAGTG+GGG + Chr1:61293829-61293848 MsG0180003372.01.T01:CDS 70.0%
GTCGAGTGGCAAGGCGGTGG+AGG + Chr1:61293811-61293830 MsG0180003372.01.T01:CDS 70.0%
GTGGAGGTGGTGCAGCGGAG+TGG + Chr1:61293827-61293846 MsG0180003372.01.T01:CDS 70.0%
TCACGAGGGGGACGCGCCTA+GGG - Chr1:61295894-61295913 None:intergenic 70.0%
TGGGGCGCACCCGTTCCAGA+AGG + Chr1:61296469-61296488 MsG0180003372.01.T01:intron 70.0%
GGTGGTGCAGCGGAGTGGGG+AGG + Chr1:61293832-61293851 MsG0180003372.01.T01:CDS 75.0%
GTCACGAGGGGGACGCGCCT+AGG - Chr1:61295895-61295914 None:intergenic 75.0%
!! CGGAGAGCACCGGAACCGGG+TGG - Chr1:61293663-61293682 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
Chr1 gene 61293257 61297121 61293257 ID=MsG0180003372.01;Name=MsG0180003372.01
Chr1 mRNA 61293257 61297121 61293257 ID=MsG0180003372.01.T01;Parent=MsG0180003372.01;Name=MsG0180003372.01.T01;_AED=0.46;_eAED=0.47;_QI=0|0|0|1|1|1|3|0|478
Chr1 exon 61293257 61294096 61293257 ID=MsG0180003372.01.T01:exon:40627;Parent=MsG0180003372.01.T01
Chr1 exon 61296094 61296412 61296094 ID=MsG0180003372.01.T01:exon:40628;Parent=MsG0180003372.01.T01
Chr1 exon 61296844 61297121 61296844 ID=MsG0180003372.01.T01:exon:40629;Parent=MsG0180003372.01.T01
Chr1 CDS 61293257 61294096 61293257 ID=MsG0180003372.01.T01:cds;Parent=MsG0180003372.01.T01
Chr1 CDS 61296094 61296412 61296094 ID=MsG0180003372.01.T01:cds;Parent=MsG0180003372.01.T01
Chr1 CDS 61296844 61297121 61296844 ID=MsG0180003372.01.T01:cds;Parent=MsG0180003372.01.T01
Gene Sequence

>MsG0180003372.01.T01

ATGATTTGCATTTCCGGCGAATCAGAGGAGGCTGAAACAACCACATTCTCCGCCGTCCACGACGACATAATGCAAACTCACATACTCACACGCCTTGACGGCGCTGCTCTCGCTTCCGCCGCAAGCACCTGCTCCCAACTCAACTCTCTCTGTTCCGACGAACATCTCTGGGCAAACGCATGCTATTCTACGTGGCCTTCCACCAACACGCCACGTGTTCGCCATGTAATCTCAACGTTCTCCGATGGCTCCCGCTCTTTCTTCGCAGACTCTATCTCTTCTCATCATCAAAAGGATACAGCTTCAATAAATCATGACCGAACCCTAAGTTTAATCTCAGCCGTTGATATTTTCCACCGTGAGGGTCTAGTTTTCTCCAAAGTAGTTGAAACTGAAACCGTGACCACCCGGTTCCGGTGCTCTCCGTTTCGTGTTGACCTACTAGATAACAAGGATGTGATCAAATATCCAGTTGGTGGTGATGAAAACCTAGGGGAGGAGTTGAGGCTGAGCTGGATTTTGATCGATCCGGTGAGTCAACGAGCGGTGAACGTGTCGAGTGGCAAGGCGGTGGAGGTGGTGCAGCGGAGTGGGGAGGTGAAGTTGCTGTTTGTAACGGTGGTTTACGGAGAAACAGCGACGGCGACGGAGGTGGCGTTGTGTAGTGTGGTGGTGATGTTGGCGGAGGAGAATATGGAGGTTAGAGAGGTTAGTTTGCAAGTGGAGGATATGGATGGAAAACACGTGAATGGAAGGGATAGTTTGGTAATTTTGCGTAAGGCGTTGGAAGGTAGGAGAAGATGGAAGGGAATCGGGGAAGAAGAAGGTTATATGGAATTCTTGGCGCCGTCTGTGGGAAGAGGTAAAACTAGCCTTGACAAAGTTTGTGAATCGCAGACTGCGATTTGGAAATCCAAAACTAAACCAGATAAACCTCTGAATCGTAGAACGCTTTACGATTTGGAAACCCTTCACAAAGAAACCCCTGGATCTCACCTCACGTTAGATTCAGAGAAAAACCTCATCGATATGGCAACTCCAGAAGAAGCTGAAACGATGAGAACCCAAATCGCCCAGCTAATCGAAAGAAACGAGGCTCTACAGGCTTCGGTTGAAACCATCCAACAACAACAGAACTTGGAGAAGGCGGAGAAGGCAGGAGCTATTCGAAGAACATTCCAGAACGGGCTGCAAGCAGGGCCATTCAATGAATCCCTCGCTCAGAAACCTGCCAACTCCATGGAAGAAATTATGTCCAAAGCTAAATGCTACATTAAAGGCGAGGAGAGTAACGATGAGAAGAAGACCACAGAAGCCAAGGAGCGGCACATCGGGACAAACAGGGACCGAGGCTACTACCTGCCCCCGAACAGAGATCAGGGAACTTTTAAAAGACAGGACAGAGGATCTACAGTCTACACGACTTCACCCCACTGA

Protein sequence

>MsG0180003372.01.T01

MICISGESEEAETTTFSAVHDDIMQTHILTRLDGAALASAASTCSQLNSLCSDEHLWANACYSTWPSTNTPRVRHVISTFSDGSRSFFADSISSHHQKDTASINHDRTLSLISAVDIFHREGLVFSKVVETETVTTRFRCSPFRVDLLDNKDVIKYPVGGDENLGEELRLSWILIDPVSQRAVNVSSGKAVEVVQRSGEVKLLFVTVVYGETATATEVALCSVVVMLAEENMEVREVSLQVEDMDGKHVNGRDSLVILRKALEGRRRWKGIGEEEGYMEFLAPSVGRGKTSLDKVCESQTAIWKSKTKPDKPLNRRTLYDLETLHKETPGSHLTLDSEKNLIDMATPEEAETMRTQIAQLIERNEALQASVETIQQQQNLEKAEKAGAIRRTFQNGLQAGPFNESLAQKPANSMEEIMSKAKCYIKGEESNDEKKTTEAKERHIGTNRDRGYYLPPNRDQGTFKRQDRGSTVYTTSPH*