AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780035993.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780035993.01.T01 MTR_7g006560 97.968 443 6 1 1 440 1 443 0.0 880
MsG0780035993.01.T01 MTR_8g096130 68.617 376 114 2 62 433 34 409 0.0 535
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780035993.01.T01 AT5G13420 78.870 407 83 1 36 439 31 437 0.0 642

Find 127 sgRNAs with CRISPR-Local

Find 303 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCACAGGAGCCTTTGCTTCT+TGG 0.121680 7:+1053237 None:intergenic
TTATATGTTGCTCCTCTTAT+TGG 0.160550 7:-1053175 MsG0780035993.01.T01:CDS
CCGCGTAGATCAAGGGCTTC+TGG 0.192006 7:+1053454 None:intergenic
CATTGTTAGTCTGAAATTCT+TGG 0.237216 7:-1052221 MsG0780035993.01.T01:three_prime_UTR
GACAAGATGCTTGAGAAAAT+TGG 0.255255 7:-1053481 MsG0780035993.01.T01:CDS
CACAGATGATTTATCATTCT+AGG 0.278158 7:+1052253 None:intergenic
TTGGACGGTCTGGAGGCATC+TGG 0.296116 7:-1053571 MsG0780035993.01.T01:CDS
CGCGTAGATCAAGGGCTTCT+GGG 0.316493 7:+1053455 None:intergenic
AGCAGTAGCCCAAGCAGCAC+TGG 0.319222 7:-1053323 MsG0780035993.01.T01:CDS
ACATAAAATGACATCAGATT+TGG 0.322012 7:+1051999 None:intergenic
TGCTCACAAACAGATGAAAA+TGG 0.336582 7:-1055402 MsG0780035993.01.T01:CDS
TGCATGTGTCCCTTCAATTA+AGG 0.343064 7:-1054147 MsG0780035993.01.T01:CDS
CTTATTGAAAGTGGTGTTAG+AGG 0.347970 7:-1055279 MsG0780035993.01.T01:CDS
GATCTGGATCGAAGAGATTC+TGG 0.349569 7:+1057012 None:intergenic
TCCAATCAATACCCAACTTC+TGG 0.350106 7:+1052499 None:intergenic
TGAAGAACCGTCCTCTTTGC+AGG 0.353042 7:+1055375 None:intergenic
CAAGTGAGGTGTGAACTTTA+TGG 0.357425 7:-1052367 MsG0780035993.01.T01:exon
TTGGGCCAGAAAATTTCTTT+TGG 0.367465 7:+1053287 None:intergenic
GTGCTTACAATGATCAATTC+AGG 0.381631 7:-1054959 MsG0780035993.01.T01:intron
TTGCATGGTGCAATTATTGC+AGG 0.385691 7:+1052131 None:intergenic
TTACAGCTTCATATCTTTCA+AGG 0.387825 7:+1053605 None:intergenic
CCTTCTCCTGCAGTGAATCC+AGG 0.391080 7:+1052412 None:intergenic
TTTCCATGTACTTTGTATGC+TGG 0.396835 7:-1052173 MsG0780035993.01.T01:three_prime_UTR
TCCAGAAGTTGGGTATTGAT+TGG 0.397913 7:-1052500 MsG0780035993.01.T01:CDS
AAGACATTGACAGTGCATAC+TGG 0.398567 7:-1054370 MsG0780035993.01.T01:CDS
TGTTGGTTCACAGCTTGAAT+TGG 0.398912 7:-1052472 MsG0780035993.01.T01:CDS
CTGGTAAGCCAGTGCTGCTT+GGG 0.405777 7:+1053315 None:intergenic
GGAATCTTAATATACACATT+GGG 0.407298 7:+1054179 None:intergenic
GAACCATAGAAGCTGCAAAA+TGG 0.407939 7:-1054223 MsG0780035993.01.T01:CDS
TAATCTCTGCCGACCCGTTA+CGG 0.408310 7:-1055313 MsG0780035993.01.T01:CDS
TGATGCTTACTTGGACGGTC+TGG 0.408914 7:-1053581 MsG0780035993.01.T01:CDS
GTAACAATTCTCAGTTTCAA+TGG 0.411490 7:-1057091 MsG0780035993.01.T01:exon
GCTGGTAAGCCAGTGCTGCT+TGG 0.416878 7:+1053314 None:intergenic
CTAACACCACTTTCAATAAG+AGG 0.417790 7:+1055282 None:intergenic
AGCTGTAATTGATGCTTACT+TGG 0.425218 7:-1053590 MsG0780035993.01.T01:CDS
GCGATAACTTCCTTAATTGA+AGG 0.430140 7:+1054137 None:intergenic
TAACTAGAGCTTCCCACCTT+GGG 0.431657 7:+1053269 None:intergenic
TGCAAAATGGCTTCATAAAG+TGG 0.434093 7:-1054210 MsG0780035993.01.T01:CDS
TTACCTTGCCGCGTAGATCA+AGG 0.439121 7:+1053446 None:intergenic
AATAAGAGGAGCAACATATA+AGG 0.440098 7:+1053177 None:intergenic
GAAAGCCTTTGACAGCCTCC+TGG 0.444184 7:-1052430 MsG0780035993.01.T01:CDS
AAAGAAGCGCGGTTTGTGTT+TGG 0.445528 7:+1057036 None:intergenic
ATGTGATGGCTTACGGTGTC+GGG 0.454815 7:+1053151 None:intergenic
GGGACACATGCAGCTGTAGC+TGG 0.457283 7:+1054158 None:intergenic
CACGTTCACACTTATTCCAT+TGG 0.457925 7:+1054115 None:intergenic
TGCAGGGAACTTGTGCAAGC+AGG 0.463242 7:-1054395 MsG0780035993.01.T01:intron
TTAATAAAAGACAGCGGCTA+AGG 0.467268 7:-1052306 MsG0780035993.01.T01:three_prime_UTR
TCGATCACGGTGCCGTAGCC+AGG 0.469199 7:-1052569 MsG0780035993.01.T01:CDS
TACAATGCTATCCAGAAGTT+GGG 0.474420 7:-1052510 MsG0780035993.01.T01:CDS
GTAATGTATGATGCCGCGTA+CGG 0.474741 7:-1052330 MsG0780035993.01.T01:three_prime_UTR
AAATCATTTGTATTGTTGAA+AGG 0.476234 7:+1056970 None:intergenic
ATACAATGCTATCCAGAAGT+TGG 0.476685 7:-1052511 MsG0780035993.01.T01:CDS
AGAGGAATCAGATCCGTAAC+GGG 0.477720 7:+1055300 None:intergenic
TTAACTAGAGCTTCCCACCT+TGG 0.478200 7:+1053268 None:intergenic
GGAGCAACATATAAGGTGTC+AGG 0.483934 7:+1053184 None:intergenic
TGAGTCTATTGTCCTGGCTA+CGG 0.486428 7:+1052557 None:intergenic
CCAAGAAGCAAAGGCTCCTG+TGG 0.487273 7:-1053237 MsG0780035993.01.T01:CDS
CTGATTCCTCTTATTGAAAG+TGG 0.490876 7:-1055288 MsG0780035993.01.T01:CDS
CGATAAATGCTTGAAGTGCT+TGG 0.491108 7:+1052589 None:intergenic
TGCATTTGAGTCTATTGTCC+TGG 0.491718 7:+1052551 None:intergenic
GGTATTGATTGGAGCTATGT+TGG 0.495472 7:-1052489 MsG0780035993.01.T01:CDS
TCAATTTATGATCAAACTGA+TGG 0.501880 7:-1054302 MsG0780035993.01.T01:CDS
CGATAACTTCCTTAATTGAA+GGG 0.507817 7:+1054138 None:intergenic
ATTAAGGAAGTTATCGCCAA+TGG 0.509849 7:-1054131 MsG0780035993.01.T01:CDS
TAATGTATGATGCCGCGTAC+GGG 0.510892 7:-1052329 MsG0780035993.01.T01:three_prime_UTR
CAGCCTCCTGGATTCACTGC+AGG 0.514881 7:-1052418 MsG0780035993.01.T01:CDS
TGGAATCTTAATATACACAT+TGG 0.517086 7:+1054178 None:intergenic
TTTCTGTTGAAGTATCTCCT+AGG 0.521652 7:-1054265 MsG0780035993.01.T01:CDS
AGAAACAAGGGCAGAGTCCA+TGG 0.521731 7:-1055341 MsG0780035993.01.T01:CDS
TATAAGGTGTCAGGATAGGC+AGG 0.522356 7:+1053193 None:intergenic
CATGATCTTTATGAGAAACA+AGG 0.525914 7:-1055354 MsG0780035993.01.T01:CDS
CCTGGATTCACTGCAGGAGA+AGG 0.526429 7:-1052412 MsG0780035993.01.T01:CDS
TACCTTGCCGCGTAGATCAA+GGG 0.526893 7:+1053447 None:intergenic
TAATAAAAGACAGCGGCTAA+GGG 0.533896 7:-1052305 MsG0780035993.01.T01:three_prime_UTR
AATGCTTGAAGTGCTTGGTC+TGG 0.533962 7:+1052594 None:intergenic
GACTGTCCGATCTAAATCAA+TGG 0.535269 7:-1052097 MsG0780035993.01.T01:three_prime_UTR
AGACATTGACAGTGCATACT+GGG 0.538449 7:-1054369 MsG0780035993.01.T01:CDS
ACCTCAAAGACGTTACAAAA+CGG 0.539336 7:+1056902 None:intergenic
CTCGTTCTTTGTCAGTCGAG+TGG 0.539822 7:-1053515 MsG0780035993.01.T01:CDS
TAACGCTGGTTGAAGCCCAC+AGG 0.542262 7:+1053221 None:intergenic
TGGTGTTGTGATCTTAGAAA+CGG 0.546780 7:+1057056 None:intergenic
GAAGGCAAAATCTCTTAAGC+TGG 0.547270 7:-1052394 MsG0780035993.01.T01:CDS
TACAGCTTCATATCTTTCAA+GGG 0.547625 7:+1053606 None:intergenic
GCAGGGAACTTGTGCAAGCA+GGG 0.547808 7:-1054394 MsG0780035993.01.T01:intron
AATGTGATGGCTTACGGTGT+CGG 0.552602 7:+1053150 None:intergenic
GTAATTGATGCTTACTTGGA+CGG 0.553368 7:-1053586 MsG0780035993.01.T01:CDS
TGGACGGTCTGGAGGCATCT+GGG 0.554082 7:-1053570 MsG0780035993.01.T01:CDS
GGTTCACAGCTTGAATTGGA+AGG 0.554895 7:-1052468 MsG0780035993.01.T01:CDS
CTTAAGCTGGTCAGCAAGTG+AGG 0.557674 7:-1052381 MsG0780035993.01.T01:exon
AAACCAGCATACAAAGTACA+TGG 0.559423 7:+1052170 None:intergenic
TCAGTATCCTCAGCAAGCCT+AGG 0.564022 7:+1054248 None:intergenic
CCTCTGCCATTGATTTAGAT+CGG 0.567391 7:+1052091 None:intergenic
TGCTTACTTGGACGGTCTGG+AGG 0.568623 7:-1053578 MsG0780035993.01.T01:CDS
TGAATCCAGGAGGCTGTCAA+AGG 0.570972 7:+1052425 None:intergenic
AGTCGAGATTTAAAATTGCA+TGG 0.571287 7:+1052116 None:intergenic
TCAAATGCATCTGAAGCTGA+AGG 0.573568 7:-1052537 MsG0780035993.01.T01:CDS
TTGAAGTGCTTGGTCTGGCA+TGG 0.574976 7:+1052599 None:intergenic
GCGTAGATCAAGGGCTTCTG+GGG 0.575312 7:+1053456 None:intergenic
AACATATAAGGTGTCAGGAT+AGG 0.576598 7:+1053189 None:intergenic
ACGGTGTCGGGTCCAATAAG+AGG 0.578637 7:+1053163 None:intergenic
GATCAAACTGATGGAGGTGA+TGG 0.584623 7:-1054293 MsG0780035993.01.T01:CDS
AGCCCTTGATCTACGCGGCA+AGG 0.585764 7:-1053449 MsG0780035993.01.T01:intron
CCGATCTAAATCAATGGCAG+AGG 0.586545 7:-1052091 MsG0780035993.01.T01:three_prime_UTR
CTTCAAGCATTTATCGATCA+CGG 0.590101 7:-1052582 MsG0780035993.01.T01:CDS
AAGAGGAATCAGATCCGTAA+CGG 0.596662 7:+1055299 None:intergenic
CAAGAAGCAAAGGCTCCTGT+GGG 0.597921 7:-1053236 MsG0780035993.01.T01:CDS
TGCATGGTGCAATTATTGCA+GGG 0.598726 7:+1052132 None:intergenic
ATGATCTTTATGAGAAACAA+GGG 0.602950 7:-1055353 MsG0780035993.01.T01:CDS
TGGAGTTCCTGCAAAGAGGA+CGG 0.616452 7:-1055382 MsG0780035993.01.T01:CDS
ATTTATGATCAAACTGATGG+AGG 0.617182 7:-1054299 MsG0780035993.01.T01:CDS
ATACTGGGAACTTGTAGTGA+AGG 0.629191 7:-1054354 MsG0780035993.01.T01:CDS
AGGCTTGCTGAGGATACTGA+AGG 0.632568 7:-1054245 MsG0780035993.01.T01:CDS
CGGCAGAGATTATCATACCA+TGG 0.638956 7:+1055324 None:intergenic
AAAATGGAGTTCCTGCAAAG+AGG 0.639303 7:-1055386 MsG0780035993.01.T01:CDS
GAATCTTAATATACACATTG+GGG 0.640842 7:+1054180 None:intergenic
AATAAAAGACAGCGGCTAAG+GGG 0.653569 7:-1052304 MsG0780035993.01.T01:three_prime_UTR
GAATCAGATCCGTAACGGGT+CGG 0.659162 7:+1055304 None:intergenic
CAACACTTGTGACTCTAGAG+AGG 0.660116 7:+1053539 None:intergenic
ATAGGCAGGATTCTTAACGC+TGG 0.660124 7:+1053207 None:intergenic
AGTATCTCCTAGGCTTGCTG+AGG 0.671909 7:-1054255 MsG0780035993.01.T01:CDS
GAGATTCTGGTAAAGAAGCG+CGG 0.678266 7:+1057025 None:intergenic
CACTCGACTGACAAAGAACG+AGG 0.684880 7:+1053516 None:intergenic
TCTCCTGCAGTGAATCCAGG+AGG 0.685827 7:+1052415 None:intergenic
TTCTTAAAGAAGAAGCAGAG+AGG 0.689999 7:+1056938 None:intergenic
CCAGAAGCCCTTGATCTACG+CGG 0.702071 7:-1053454 MsG0780035993.01.T01:CDS
TACGGGTTAATAAAAGACAG+CGG 0.756696 7:-1052312 MsG0780035993.01.T01:three_prime_UTR
AGGCGTCACTAGCAACCCAG+CGG 0.791833 7:-1055259 MsG0780035993.01.T01:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATTTTATTAAAATTTT+TGG - Chr7:1052908-1052927 MsG0780035993.01.T01:intron 0.0%
!! ACAAATTATTTAAAAATTCA+GGG + Chr7:1056183-1056202 None:intergenic 10.0%
!! GATTAAAAAACAATTATTTA+AGG - Chr7:1056259-1056278 MsG0780035993.01.T01:intron 10.0%
!! TACAAATTATTTAAAAATTC+AGG + Chr7:1056184-1056203 None:intergenic 10.0%
!!! ATGTTTTAGTTTTAATATTA+TGG - Chr7:1057089-1057108 MsG0780035993.01.T01:exon 10.0%
!!! ATTAAATACTTTTAATTTTC+AGG - Chr7:1052861-1052880 MsG0780035993.01.T01:intron 10.0%
!! AAAATAGAACATTAAATTCA+CGG + Chr7:1054621-1054640 None:intergenic 15.0%
!! AAAATGTTTAATTAATCTGA+AGG + Chr7:1056344-1056363 None:intergenic 15.0%
!! GATATAATCAACATAATAAT+GGG - Chr7:1055096-1055115 MsG0780035993.01.T01:intron 15.0%
!! GTAAAAAAAAATTACACTAT+CGG - Chr7:1052829-1052848 MsG0780035993.01.T01:intron 15.0%
!! TATAAAAAAAATAGAAATCG+AGG + Chr7:1054530-1054549 None:intergenic 15.0%
!! TCTATATGACATTATTTAAT+TGG + Chr7:1052482-1052501 None:intergenic 15.0%
!! TGATATAATCAACATAATAA+TGG - Chr7:1055095-1055114 MsG0780035993.01.T01:intron 15.0%
!!! AAATTTGAAAGAAAAACTTT+TGG + Chr7:1054158-1054177 None:intergenic 15.0%
!!! ATTTCTATTTTTTTTATAGG+AGG - Chr7:1054532-1054551 MsG0780035993.01.T01:intron 15.0%
!!! GACAATTTTTTCAAAATTTA+CGG - Chr7:1056232-1056251 MsG0780035993.01.T01:intron 15.0%
!!! TCGATTTCTATTTTTTTTAT+AGG - Chr7:1054529-1054548 MsG0780035993.01.T01:intron 15.0%
!!! TTATTATGTTGATTATATCA+AGG + Chr7:1055095-1055114 None:intergenic 15.0%
!!! TTTCTATTTTTTTTATAGGA+GGG - Chr7:1054533-1054552 MsG0780035993.01.T01:intron 15.0%
!! AAAAAAAAAAACCAAGTTCA+GGG + Chr7:1056121-1056140 None:intergenic 20.0%
!! AAACTAAATATACTTTGTGA+AGG + Chr7:1054295-1054314 None:intergenic 20.0%
!! AAATAGAACATTAAATTCAC+GGG + Chr7:1054620-1054639 None:intergenic 20.0%
!! AAATCATTTGTATTGTTGAA+AGG + Chr7:1052102-1052121 None:intergenic 20.0%
!! AATGTTTCAAAAATCAATAC+TGG - Chr7:1053949-1053968 MsG0780035993.01.T01:intron 20.0%
!! AGAGATTAATCTCTAAATAA+TGG - Chr7:1052601-1052620 MsG0780035993.01.T01:CDS 20.0%
!! ATAGATTTATGAACTATTTG+AGG - Chr7:1056021-1056040 MsG0780035993.01.T01:intron 20.0%
!! ATATATAAAGAGTTGCATTA+TGG - Chr7:1052784-1052803 MsG0780035993.01.T01:intron 20.0%
!! TAAAAAAAAAAACCAAGTTC+AGG + Chr7:1056122-1056141 None:intergenic 20.0%
!! TAATGTCATATAGATATTTG+TGG - Chr7:1052488-1052507 MsG0780035993.01.T01:CDS 20.0%
!! TCATATTCATTATAAACTTG+AGG + Chr7:1053569-1053588 None:intergenic 20.0%
!!! AAAGTATATTTAGTTTAGCT+TGG - Chr7:1054299-1054318 MsG0780035993.01.T01:CDS 20.0%
!!! AATGTTCTATTTTTAATTCG+TGG - Chr7:1054628-1054647 MsG0780035993.01.T01:intron 20.0%
!!! ATTTTTGAAACATTATTCCT+AGG + Chr7:1053943-1053962 None:intergenic 20.0%
!!! CTTGTTAGTAATTTGTAATT+AGG + Chr7:1056286-1056305 None:intergenic 20.0%
!!! TTCTATTTTTTTTATAGGAG+GGG - Chr7:1054534-1054553 MsG0780035993.01.T01:intron 20.0%
!!! TTTTGATTTTTATACACTGA+CGG - Chr7:1052364-1052383 MsG0780035993.01.T01:exon 20.0%
! AAAATAAAGTCAAATTGCGT+AGG - Chr7:1053083-1053102 MsG0780035993.01.T01:intron 25.0%
! AATCTGAAGAAAATACTACT+TGG + Chr7:1055991-1056010 None:intergenic 25.0%
! ACAAATTACTAACAAGTTCA+GGG - Chr7:1056290-1056309 MsG0780035993.01.T01:intron 25.0%
! ACAGTCATTGGATATTTAAT+TGG + Chr7:1052414-1052433 None:intergenic 25.0%
! ACATAAAATGACATCAGATT+TGG + Chr7:1057073-1057092 None:intergenic 25.0%
! ATAACATAAATTATTACCGC+TGG + Chr7:1053829-1053848 None:intergenic 25.0%
! ATGATCTTTATGAGAAACAA+GGG - Chr7:1053716-1053735 MsG0780035993.01.T01:intron 25.0%
! ATGTTAACATGCTATAAGTT+GGG - Chr7:1055040-1055059 MsG0780035993.01.T01:intron 25.0%
! ATTAAAGTTAAATGGCTGTT+TGG + Chr7:1053246-1053265 None:intergenic 25.0%
! ATTCATTATAAACTTGAGGT+TGG + Chr7:1053565-1053584 None:intergenic 25.0%
! CAATTATTGTATACAGTCAT+TGG + Chr7:1052426-1052445 None:intergenic 25.0%
! CTTCTAAATGAAGATGTATT+TGG + Chr7:1055298-1055317 None:intergenic 25.0%
! CTTGATTATGTTAACAAACT+TGG - Chr7:1056386-1056405 MsG0780035993.01.T01:intron 25.0%
! GAATCTTAATATACACATTG+GGG + Chr7:1054892-1054911 None:intergenic 25.0%
! GGAATCTTAATATACACATT+GGG + Chr7:1054893-1054912 None:intergenic 25.0%
! GGATTATTGAAAAAATGTGA+TGG + Chr7:1055935-1055954 None:intergenic 25.0%
! GGCTTAACATTAAAGTTAAA+TGG + Chr7:1053254-1053273 None:intergenic 25.0%
! GTAATAATGAAAGACTTGTA+TGG - Chr7:1053875-1053894 MsG0780035993.01.T01:intron 25.0%
! TAAAATTACATGATCATGCA+GGG - Chr7:1054658-1054677 MsG0780035993.01.T01:intron 25.0%
! TAACATAAATTATTACCGCT+GGG + Chr7:1053828-1053847 None:intergenic 25.0%
! TAAGAACTAACATGTAAAAG+TGG - Chr7:1052519-1052538 MsG0780035993.01.T01:CDS 25.0%
! TAAGCTTATTTACTGACAAA+AGG + Chr7:1053222-1053241 None:intergenic 25.0%
! TACAAATTACTAACAAGTTC+AGG - Chr7:1056289-1056308 MsG0780035993.01.T01:intron 25.0%
! TATGTTAACATGCTATAAGT+TGG - Chr7:1055039-1055058 MsG0780035993.01.T01:intron 25.0%
! TCAAATATACACCAAGTATA+TGG + Chr7:1053444-1053463 None:intergenic 25.0%
! TCAATTTATGATCAAACTGA+TGG - Chr7:1054767-1054786 MsG0780035993.01.T01:intron 25.0%
! TGGAATCTTAATATACACAT+TGG + Chr7:1054894-1054913 None:intergenic 25.0%
! TGGTATTAGTATATGATTGA+TGG + Chr7:1054138-1054157 None:intergenic 25.0%
!! AAAATTTCTTTTGGTATAGC+TGG + Chr7:1055776-1055795 None:intergenic 25.0%
!! CTATACCAAAAGAAATTTTC+TGG - Chr7:1055777-1055796 MsG0780035993.01.T01:intron 25.0%
!! CTATTTGAGGATTTTCAAAA+AGG - Chr7:1056034-1056053 MsG0780035993.01.T01:intron 25.0%
!! GTCATGACATTGAATTTTAT+AGG - Chr7:1055722-1055741 MsG0780035993.01.T01:intron 25.0%
!!! ACAACTTAATTTGTAGCTTA+CGG - Chr7:1053006-1053025 MsG0780035993.01.T01:intron 25.0%
!!! CATGAAGTTTGTTTTTTCAT+TGG - Chr7:1052969-1052988 MsG0780035993.01.T01:intron 25.0%
!!! TACAAATTCTTTTAGTTCAG+AGG + Chr7:1056060-1056079 None:intergenic 25.0%
!!! TACTTGGTGTATATTTGAAT+TGG - Chr7:1053446-1053465 MsG0780035993.01.T01:intron 25.0%
!!! TCACTTTTCCAAATTATTAC+CGG + Chr7:1055215-1055234 None:intergenic 25.0%
!!! TTACAACTCTTAAAAGTGTT+TGG + Chr7:1053992-1054011 None:intergenic 25.0%
AAAAATATTTACACCGTCAG+TGG + Chr7:1052666-1052685 None:intergenic 30.0%
AACACGCAACATTATACTTA+AGG + Chr7:1054573-1054592 None:intergenic 30.0%
AATAAGAGGAGCAACATATA+AGG + Chr7:1055895-1055914 None:intergenic 30.0%
ACAAACGTATATTTAGACTC+CGG + Chr7:1055424-1055443 None:intergenic 30.0%
ACAGTATAACACCATGATTT+CGG + Chr7:1053399-1053418 None:intergenic 30.0%
ACTCTCTACAATCATCTATT+TGG + Chr7:1052716-1052735 None:intergenic 30.0%
ATATACACCAAGTATATGGT+TGG + Chr7:1053440-1053459 None:intergenic 30.0%
ATTTATGATCAAACTGATGG+AGG - Chr7:1054770-1054789 MsG0780035993.01.T01:intron 30.0%
CACAGATGATTTATCATTCT+AGG + Chr7:1056819-1056838 None:intergenic 30.0%
CATGATCTTTATGAGAAACA+AGG - Chr7:1053715-1053734 MsG0780035993.01.T01:intron 30.0%
CCTAATCGACATTTATATTG+AGG - Chr7:1053604-1053623 MsG0780035993.01.T01:CDS 30.0%
CGATAACTTCCTTAATTGAA+GGG + Chr7:1054934-1054953 None:intergenic 30.0%
CTAAAATTACATGATCATGC+AGG - Chr7:1054657-1054676 MsG0780035993.01.T01:intron 30.0%
CTGTCAGAATAATACTTAGT+GGG - Chr7:1053273-1053292 MsG0780035993.01.T01:CDS 30.0%
GAACATTTCTGACAATTTCA+GGG + Chr7:1056090-1056109 None:intergenic 30.0%
GATTAATTTCTATCCACTGA+CGG - Chr7:1052650-1052669 MsG0780035993.01.T01:intron 30.0%
GCATTATGGAATGATTTGAT+TGG - Chr7:1052798-1052817 MsG0780035993.01.T01:intron 30.0%
GTAACAATTCTCAGTTTCAA+TGG - Chr7:1051978-1051997 MsG0780035993.01.T01:three_prime_UTR 30.0%
TACAGCTTCATATCTTTCAA+GGG + Chr7:1055466-1055485 None:intergenic 30.0%
TCAAATCCAAACGCAAAAAT+TGG + Chr7:1055671-1055690 None:intergenic 30.0%
TCTTTAATGAACATCTCGTT+AGG - Chr7:1056363-1056382 MsG0780035993.01.T01:intron 30.0%
TGAAAAAATGTGATGGCTTA+CGG + Chr7:1055928-1055947 None:intergenic 30.0%
TGAACATTTCTGACAATTTC+AGG + Chr7:1056091-1056110 None:intergenic 30.0%
TGTTGTCAAATTGTAGATGT+AGG + Chr7:1054403-1054422 None:intergenic 30.0%
TTACAGCTTCATATCTTTCA+AGG + Chr7:1055467-1055486 None:intergenic 30.0%
TTATATGTTGCTCCTCTTAT+TGG - Chr7:1055894-1055913 MsG0780035993.01.T01:intron 30.0%
TTGGTGTATATTTGAATTGG+TGG - Chr7:1053449-1053468 MsG0780035993.01.T01:intron 30.0%
! AGTCGAGATTTAAAATTGCA+TGG + Chr7:1056956-1056975 None:intergenic 30.0%
! CATTGTTAGTCTGAAATTCT+TGG - Chr7:1056848-1056867 MsG0780035993.01.T01:intron 30.0%
! CCTCAATATAAATGTCGATT+AGG + Chr7:1053607-1053626 None:intergenic 30.0%
! CGAAGATATTTTTCTATCCT+AGG - Chr7:1053923-1053942 MsG0780035993.01.T01:intron 30.0%
! TGTTGATTATATCAAGGACA+AGG + Chr7:1055089-1055108 None:intergenic 30.0%
! TGTTGCTATTGTCAAAATCA+TGG - Chr7:1053521-1053540 MsG0780035993.01.T01:CDS 30.0%
! TTATTGCCAATTTTTGCGTT+TGG - Chr7:1055662-1055681 MsG0780035993.01.T01:intron 30.0%
!!! ACTTTGTATGCTGGTTTTTA+GGG - Chr7:1056905-1056924 MsG0780035993.01.T01:CDS 30.0%
!!! GTTTTTTCATTGGTTCTGTT+TGG - Chr7:1052979-1052998 MsG0780035993.01.T01:intron 30.0%
!!! TACTTTGTATGCTGGTTTTT+AGG - Chr7:1056904-1056923 MsG0780035993.01.T01:CDS 30.0%
!!! TCTATTTTTAATTCGTGGTG+TGG - Chr7:1054633-1054652 MsG0780035993.01.T01:intron 30.0%
AAACCAGCATACAAAGTACA+TGG + Chr7:1056902-1056921 None:intergenic 35.0%
ACCTCAAAGACGTTACAAAA+CGG + Chr7:1052170-1052189 None:intergenic 35.0%
AGCTGTAATTGATGCTTACT+TGG - Chr7:1055479-1055498 MsG0780035993.01.T01:intron 35.0%
ATACAATGCTATCCAGAAGT+TGG - Chr7:1056558-1056577 MsG0780035993.01.T01:intron 35.0%
ATATCTTCGCACAAGTAGAA+CGG + Chr7:1053912-1053931 None:intergenic 35.0%
ATTAAGGAAGTTATCGCCAA+TGG - Chr7:1054938-1054957 MsG0780035993.01.T01:intron 35.0%
ATTAGAAGTAGAGTAAACCG+TGG - Chr7:1054191-1054210 MsG0780035993.01.T01:CDS 35.0%
CCACTAAGTATTATTCTGAC+AGG + Chr7:1053275-1053294 None:intergenic 35.0%
CCTGTCAGAATAATACTTAG+TGG - Chr7:1053272-1053291 MsG0780035993.01.T01:CDS 35.0%
CTAACACCACTTTCAATAAG+AGG + Chr7:1053790-1053809 None:intergenic 35.0%
CTGATTCCTCTTATTGAAAG+TGG - Chr7:1053781-1053800 MsG0780035993.01.T01:intron 35.0%
CTTCAAGCATTTATCGATCA+CGG - Chr7:1056487-1056506 MsG0780035993.01.T01:intron 35.0%
GACAAGATGCTTGAGAAAAT+TGG - Chr7:1055588-1055607 MsG0780035993.01.T01:intron 35.0%
GAGAAGGTAATGTTAGTTCA+GGG + Chr7:1056430-1056449 None:intergenic 35.0%
GAGTAATACAACGATTATGC+AGG + Chr7:1054257-1054276 None:intergenic 35.0%
GCGATAACTTCCTTAATTGA+AGG + Chr7:1054935-1054954 None:intergenic 35.0%
GGAGTCTAAATATACGTTTG+TGG - Chr7:1055423-1055442 MsG0780035993.01.T01:intron 35.0%
GTAATGTTAGTTCAGGGATT+AGG + Chr7:1056424-1056443 None:intergenic 35.0%
GTAATTGATGCTTACTTGGA+CGG - Chr7:1055483-1055502 MsG0780035993.01.T01:intron 35.0%
GTGCTTACAATGATCAATTC+AGG - Chr7:1054110-1054129 MsG0780035993.01.T01:intron 35.0%
TAATAAAAGACAGCGGCTAA+GGG - Chr7:1056764-1056783 MsG0780035993.01.T01:intron 35.0%
TACAATGCTATCCAGAAGTT+GGG - Chr7:1056559-1056578 MsG0780035993.01.T01:intron 35.0%
TAGCTTGGTAAACTACACAA+AGG - Chr7:1054314-1054333 MsG0780035993.01.T01:CDS 35.0%
TATTTGGGTCCTTAAAGTCA+GGG - Chr7:1056202-1056221 MsG0780035993.01.T01:intron 35.0%
TCAGAATAATACTTAGTGGG+CGG - Chr7:1053276-1053295 MsG0780035993.01.T01:CDS 35.0%
TGAGAAGGTAATGTTAGTTC+AGG + Chr7:1056431-1056450 None:intergenic 35.0%
TGATATTGACATGTTGACAC+CGG - Chr7:1055193-1055212 MsG0780035993.01.T01:intron 35.0%
TGCAAAATGGCTTCATAAAG+TGG - Chr7:1054859-1054878 MsG0780035993.01.T01:intron 35.0%
TGCTCACAAACAGATGAAAA+TGG - Chr7:1053667-1053686 MsG0780035993.01.T01:intron 35.0%
TGGTGAGTTATGCAAAATCA+CGG - Chr7:1053469-1053488 MsG0780035993.01.T01:CDS 35.0%
TGTTGACACCGGTAATAATT+TGG - Chr7:1055204-1055223 MsG0780035993.01.T01:intron 35.0%
TTAATAAAAGACAGCGGCTA+AGG - Chr7:1056763-1056782 MsG0780035993.01.T01:intron 35.0%
TTCATTTAGATCCCTGAACT+TGG - Chr7:1056107-1056126 MsG0780035993.01.T01:intron 35.0%
TTCTTAAAGAAGAAGCAGAG+AGG + Chr7:1052134-1052153 None:intergenic 35.0%
TTGAATGTAACCTCATGTGT+TGG - Chr7:1055235-1055254 MsG0780035993.01.T01:intron 35.0%
TTTCCATGTACTTTGTATGC+TGG - Chr7:1056896-1056915 MsG0780035993.01.T01:intron 35.0%
! AACATATAAGGTGTCAGGAT+AGG + Chr7:1055883-1055902 None:intergenic 35.0%
! ATTTGGTGAATGACATGTGT+CGG + Chr7:1055281-1055300 None:intergenic 35.0%
! CTTATTGAAAGTGGTGTTAG+AGG - Chr7:1053790-1053809 MsG0780035993.01.T01:intron 35.0%
! GGAAGCTCTAGTTAAAAAAG+GGG - Chr7:1055809-1055828 MsG0780035993.01.T01:intron 35.0%
! GGGAAGCTCTAGTTAAAAAA+GGG - Chr7:1055808-1055827 MsG0780035993.01.T01:intron 35.0%
! GTTATGCTGGTTAGAAATGA+GGG - Chr7:1055129-1055148 MsG0780035993.01.T01:intron 35.0%
! GTTGTAAGGATGTGTTTTGT+TGG - Chr7:1052341-1052360 MsG0780035993.01.T01:three_prime_UTR 35.0%
! TACGGGTTAATAAAAGACAG+CGG - Chr7:1056757-1056776 MsG0780035993.01.T01:intron 35.0%
! TGGGAAGCTCTAGTTAAAAA+AGG - Chr7:1055807-1055826 MsG0780035993.01.T01:intron 35.0%
! TTGGGCCAGAAAATTTCTTT+TGG + Chr7:1055785-1055804 None:intergenic 35.0%
! TTTCTGTTGAAGTATCTCCT+AGG - Chr7:1054804-1054823 MsG0780035993.01.T01:intron 35.0%
!! AAAAGAAATTTTCTGGCCCA+AGG - Chr7:1055784-1055803 MsG0780035993.01.T01:intron 35.0%
!! CATAATAATGGGTAGTAGCA+AGG - Chr7:1055107-1055126 MsG0780035993.01.T01:intron 35.0%
!! GCTGTTTTCATAAGCTAAGT+TGG - Chr7:1053111-1053130 MsG0780035993.01.T01:intron 35.0%
!! TGGTGTTGTGATCTTAGAAA+CGG + Chr7:1052016-1052035 None:intergenic 35.0%
!!! CGATGTGTTTTGTTGTTGTA+AGG - Chr7:1052327-1052346 MsG0780035993.01.T01:three_prime_UTR 35.0%
!!! GTCATGCTTATTTTTGCATG+CGG - Chr7:1052220-1052239 MsG0780035993.01.T01:three_prime_UTR 35.0%
AAAATGGAGTTCCTGCAAAG+AGG - Chr7:1053683-1053702 MsG0780035993.01.T01:intron 40.0%
AAGACATTGACAGTGCATAC+TGG - Chr7:1054699-1054718 MsG0780035993.01.T01:intron 40.0%
AAGAGGAATCAGATCCGTAA+CGG + Chr7:1053773-1053792 None:intergenic 40.0%
AAGGTCAATGTTGTCAATCC+CGG - Chr7:1054333-1054352 MsG0780035993.01.T01:CDS 40.0%
AATAAAAGACAGCGGCTAAG+GGG - Chr7:1056765-1056784 MsG0780035993.01.T01:intron 40.0%
AATCGCAATTCTCTGTGATC+CGG + Chr7:1054355-1054374 None:intergenic 40.0%
ACGGAGTTTGACAAAGTTAC+AGG - Chr7:1053328-1053347 MsG0780035993.01.T01:CDS 40.0%
AGACATTGACAGTGCATACT+GGG - Chr7:1054700-1054719 MsG0780035993.01.T01:intron 40.0%
ATACTGGGAACTTGTAGTGA+AGG - Chr7:1054715-1054734 MsG0780035993.01.T01:intron 40.0%
CAAGTGAGGTGTGAACTTTA+TGG - Chr7:1056702-1056721 MsG0780035993.01.T01:intron 40.0%
CACCAAGTATATGGTTGGAT+TGG + Chr7:1053435-1053454 None:intergenic 40.0%
CACCAATCCAACCATATACT+TGG - Chr7:1053430-1053449 MsG0780035993.01.T01:intron 40.0%
CACGTTCACACTTATTCCAT+TGG + Chr7:1054957-1054976 None:intergenic 40.0%
CGGAGTTTGACAAAGTTACA+GGG - Chr7:1053329-1053348 MsG0780035993.01.T01:intron 40.0%
CTGAAAGATCTGCAATCATG+TGG + Chr7:1054071-1054090 None:intergenic 40.0%
CTGCAATCATGTGGTATAGA+CGG + Chr7:1054062-1054081 None:intergenic 40.0%
GAACCATAGAAGCTGCAAAA+TGG - Chr7:1054846-1054865 MsG0780035993.01.T01:intron 40.0%
GAAGGCAAAATCTCTTAAGC+TGG - Chr7:1056675-1056694 MsG0780035993.01.T01:intron 40.0%
GACTGTCCGATCTAAATCAA+TGG - Chr7:1056972-1056991 MsG0780035993.01.T01:CDS 40.0%
GCAAACATTTGACTGTTGGT+TGG - Chr7:1053626-1053645 MsG0780035993.01.T01:intron 40.0%
GGAGTTTGACAAAGTTACAG+GGG - Chr7:1053330-1053349 MsG0780035993.01.T01:intron 40.0%
GTATTTGGGTCCTTAAAGTC+AGG - Chr7:1056201-1056220 MsG0780035993.01.T01:intron 40.0%
GTCAATATCAGTGATGTGTC+TGG + Chr7:1055183-1055202 None:intergenic 40.0%
GTCGATTAGGAAACAACACA+AGG + Chr7:1053594-1053613 None:intergenic 40.0%
GTGTACTAAATCGTGTATCG+TGG - Chr7:1054425-1054444 MsG0780035993.01.T01:intron 40.0%
TACCTGGGAAGTAAATGAGA+AGG + Chr7:1056446-1056465 None:intergenic 40.0%
TACCTTCTCATTTACTTCCC+AGG - Chr7:1056441-1056460 MsG0780035993.01.T01:intron 40.0%
TCATCAAGTCCCTGACTTTA+AGG + Chr7:1056214-1056233 None:intergenic 40.0%
TCCAATCAATACCCAACTTC+TGG + Chr7:1056573-1056592 None:intergenic 40.0%
TCTCCAAACTCTCTATGCTA+TGG - Chr7:1054461-1054480 MsG0780035993.01.T01:intron 40.0%
TGAGGCAAACATTTGACTGT+TGG - Chr7:1053622-1053641 MsG0780035993.01.T01:intron 40.0%
TGAGTTATGCAAAATCACGG+TGG - Chr7:1053472-1053491 MsG0780035993.01.T01:CDS 40.0%
TGCATGGTGCAATTATTGCA+GGG + Chr7:1056940-1056959 None:intergenic 40.0%
TGCATGTGTCCCTTCAATTA+AGG - Chr7:1054922-1054941 MsG0780035993.01.T01:intron 40.0%
TGCATTTGAGTCTATTGTCC+TGG + Chr7:1056521-1056540 None:intergenic 40.0%
TTGCATGGTGCAATTATTGC+AGG + Chr7:1056941-1056960 None:intergenic 40.0%
TTTCGGCAAAAGCTGCAATT+TGG + Chr7:1053382-1053401 None:intergenic 40.0%
TTTGTAGCTTACGGCATAAG+TGG - Chr7:1053015-1053034 MsG0780035993.01.T01:intron 40.0%
! ACCGTTTTGTAACGTCTTTG+AGG - Chr7:1052166-1052185 MsG0780035993.01.T01:three_prime_UTR 40.0%
! AGGTAAGAAGCTCGTTTTGA+TGG + Chr7:1052082-1052101 None:intergenic 40.0%
! CAAGTATATGGTTGGATTGG+TGG + Chr7:1053432-1053451 None:intergenic 40.0%
! CGATAAATGCTTGAAGTGCT+TGG + Chr7:1056483-1056502 None:intergenic 40.0%
! GGTTATGCTGGTTAGAAATG+AGG - Chr7:1055128-1055147 MsG0780035993.01.T01:intron 40.0%
! GTCTTTTATTAACCCGTACG+CGG + Chr7:1056755-1056774 None:intergenic 40.0%
! TCAAATGCATCTGAAGCTGA+AGG - Chr7:1056532-1056551 MsG0780035993.01.T01:intron 40.0%
!! AAGCCATTTTGCAGCTTCTA+TGG + Chr7:1054852-1054871 None:intergenic 40.0%
!! CCTCTGCCATTGATTTAGAT+CGG + Chr7:1056981-1057000 None:intergenic 40.0%
!! GATTACTTTTACCATGCTGC+CGG - Chr7:1055402-1055421 MsG0780035993.01.T01:CDS 40.0%
!! GGTATTGATTGGAGCTATGT+TGG - Chr7:1056580-1056599 MsG0780035993.01.T01:intron 40.0%
!! TCCAGAAGTTGGGTATTGAT+TGG - Chr7:1056569-1056588 MsG0780035993.01.T01:intron 40.0%
!! TGTTGGTTCACAGCTTGAAT+TGG - Chr7:1056597-1056616 MsG0780035993.01.T01:intron 40.0%
AAAAAGGGGCCAAGAAGCAA+AGG - Chr7:1055823-1055842 MsG0780035993.01.T01:intron 45.0%
AATGTGATGGCTTACGGTGT+CGG + Chr7:1055922-1055941 None:intergenic 45.0%
ACTTGAGGTTGGCAGAATCA+TGG + Chr7:1053554-1053573 None:intergenic 45.0%
AGAAGTAGAGTAAACCGTGG+AGG - Chr7:1054194-1054213 MsG0780035993.01.T01:CDS 45.0%
AGAGGAATCAGATCCGTAAC+GGG + Chr7:1053772-1053791 None:intergenic 45.0%
ATAGGCAGGATTCTTAACGC+TGG + Chr7:1055865-1055884 None:intergenic 45.0%
ATATTTAGACTCCGGCAGCA+TGG + Chr7:1055416-1055435 None:intergenic 45.0%
ATCGCAATTCTCTGTGATCC+GGG + Chr7:1054354-1054373 None:intergenic 45.0%
CCGATCTAAATCAATGGCAG+AGG - Chr7:1056978-1056997 MsG0780035993.01.T01:CDS 45.0%
CGGCAGAGATTATCATACCA+TGG + Chr7:1053748-1053767 None:intergenic 45.0%
GAGATTCTGGTAAAGAAGCG+CGG + Chr7:1052047-1052066 None:intergenic 45.0%
GATCAAACTGATGGAGGTGA+TGG - Chr7:1054776-1054795 MsG0780035993.01.T01:intron 45.0%
GATCTGGATCGAAGAGATTC+TGG + Chr7:1052060-1052079 None:intergenic 45.0%
GCTAATACAAACCGACTGCA+AGG + Chr7:1053308-1053327 None:intergenic 45.0%
GGTTCACAGCTTGAATTGGA+AGG - Chr7:1056601-1056620 MsG0780035993.01.T01:intron 45.0%
GTAATGTATGATGCCGCGTA+CGG - Chr7:1056739-1056758 MsG0780035993.01.T01:intron 45.0%
TAACTAGAGCTTCCCACCTT+GGG + Chr7:1055803-1055822 None:intergenic 45.0%
TAATGTATGATGCCGCGTAC+GGG - Chr7:1056740-1056759 MsG0780035993.01.T01:intron 45.0%
TGAGTCTATTGTCCTGGCTA+CGG + Chr7:1056515-1056534 None:intergenic 45.0%
TGTGAGCATCTAATCCTGCA+AGG + Chr7:1053655-1053674 None:intergenic 45.0%
TTAACTAGAGCTTCCCACCT+TGG + Chr7:1055804-1055823 None:intergenic 45.0%
! AAAGAAGCGCGGTTTGTGTT+TGG + Chr7:1052036-1052055 None:intergenic 45.0%
! AATGCTTGAAGTGCTTGGTC+TGG + Chr7:1056478-1056497 None:intergenic 45.0%
! CAACACTTGTGACTCTAGAG+AGG + Chr7:1055533-1055552 None:intergenic 45.0%
! GGAGCAACATATAAGGTGTC+AGG + Chr7:1055888-1055907 None:intergenic 45.0%
! TATAAGGTGTCAGGATAGGC+AGG + Chr7:1055879-1055898 None:intergenic 45.0%
! TGCAGCTTTTGCCGAAATCA+TGG - Chr7:1053385-1053404 MsG0780035993.01.T01:intron 45.0%
!! AGAAATTTTCTGGCCCAAGG+TGG - Chr7:1055787-1055806 MsG0780035993.01.T01:intron 45.0%
!! GAAATTTTCTGGCCCAAGGT+GGG - Chr7:1055788-1055807 MsG0780035993.01.T01:intron 45.0%
!! GAAGCTCGTTTTGATGGATC+TGG + Chr7:1052076-1052095 None:intergenic 45.0%
!! GCAGTCGGTTTGTATTAGCA+CGG - Chr7:1053309-1053328 MsG0780035993.01.T01:CDS 45.0%
!! ATTAAAAAACAATTATTTAA+GGG - Chr7:1056260-1056279 MsG0780035993.01.T01:intron 5.0%
!!! ATTTTTAAATAATTTGTATT+TGG - Chr7:1056186-1056205 MsG0780035993.01.T01:intron 5.0%
!!! TTAAATAATTGTTTTTTAAT+CGG + Chr7:1056260-1056279 None:intergenic 5.0%
!!! TTTTTAAATAATTTGTATTT+GGG - Chr7:1056187-1056206 MsG0780035993.01.T01:intron 5.0%
AGAAACAAGGGCAGAGTCCA+TGG - Chr7:1053728-1053747 MsG0780035993.01.T01:intron 50.0%
ATGTGATGGCTTACGGTGTC+GGG + Chr7:1055921-1055940 None:intergenic 50.0%
CAAGAAGCAAAGGCTCCTGT+GGG - Chr7:1055833-1055852 MsG0780035993.01.T01:intron 50.0%
CACTCGACTGACAAAGAACG+AGG + Chr7:1055556-1055575 None:intergenic 50.0%
CTCGTTCTTTGTCAGTCGAG+TGG - Chr7:1055554-1055573 MsG0780035993.01.T01:intron 50.0%
CTTAAGCTGGTCAGCAAGTG+AGG - Chr7:1056688-1056707 MsG0780035993.01.T01:intron 50.0%
GAGACATGTCTATGCCTCCA+CGG + Chr7:1054211-1054230 None:intergenic 50.0%
GCGCCATAGCATAGAGAGTT+TGG + Chr7:1054467-1054486 None:intergenic 50.0%
GGGTAGTAGCAAGGTTATGC+TGG - Chr7:1055116-1055135 MsG0780035993.01.T01:intron 50.0%
GTCTGGCATGGTAGATACCT+GGG + Chr7:1056461-1056480 None:intergenic 50.0%
TAATCTCTGCCGACCCGTTA+CGG - Chr7:1053756-1053775 MsG0780035993.01.T01:intron 50.0%
TACCTTGCCGCGTAGATCAA+GGG + Chr7:1055625-1055644 None:intergenic 50.0%
TCAGTATCCTCAGCAAGCCT+AGG + Chr7:1054824-1054843 None:intergenic 50.0%
TGAAGAACCGTCCTCTTTGC+AGG + Chr7:1053697-1053716 None:intergenic 50.0%
TGAATCCAGGAGGCTGTCAA+AGG + Chr7:1056647-1056666 None:intergenic 50.0%
TGATGCTTACTTGGACGGTC+TGG - Chr7:1055488-1055507 MsG0780035993.01.T01:intron 50.0%
TGGAGTTCCTGCAAAGAGGA+CGG - Chr7:1053687-1053706 MsG0780035993.01.T01:intron 50.0%
TGGCGCGATAGAGATGCTAT+TGG - Chr7:1054481-1054500 MsG0780035993.01.T01:intron 50.0%
TTACCTTGCCGCGTAGATCA+AGG + Chr7:1055626-1055645 None:intergenic 50.0%
! TTGAAGTGCTTGGTCTGGCA+TGG + Chr7:1056473-1056492 None:intergenic 50.0%
!! AGGCTTGCTGAGGATACTGA+AGG - Chr7:1054824-1054843 MsG0780035993.01.T01:intron 50.0%
!! AGTATCTCCTAGGCTTGCTG+AGG - Chr7:1054814-1054833 MsG0780035993.01.T01:intron 50.0%
!! GAATCAGATCCGTAACGGGT+CGG + Chr7:1053768-1053787 None:intergenic 50.0%
CCAAGAAGCAAAGGCTCCTG+TGG - Chr7:1055832-1055851 MsG0780035993.01.T01:intron 55.0%
CCACAGGAGCCTTTGCTTCT+TGG + Chr7:1055835-1055854 None:intergenic 55.0%
CCAGAAGCCCTTGATCTACG+CGG - Chr7:1055615-1055634 MsG0780035993.01.T01:intron 55.0%
CCTGGATTCACTGCAGGAGA+AGG - Chr7:1056657-1056676 MsG0780035993.01.T01:intron 55.0%
CCTTCTCCTGCAGTGAATCC+AGG + Chr7:1056660-1056679 None:intergenic 55.0%
CGCGTAGATCAAGGGCTTCT+GGG + Chr7:1055617-1055636 None:intergenic 55.0%
GAAAGCCTTTGACAGCCTCC+TGG - Chr7:1056639-1056658 MsG0780035993.01.T01:intron 55.0%
GCAGGGAACTTGTGCAAGCA+GGG - Chr7:1054675-1054694 MsG0780035993.01.T01:intron 55.0%
GCGTAGATCAAGGGCTTCTG+GGG + Chr7:1055616-1055635 None:intergenic 55.0%
GGCGGTATTTGCCTTGCAGT+CGG - Chr7:1053294-1053313 MsG0780035993.01.T01:CDS 55.0%
GGTCTGGCATGGTAGATACC+TGG + Chr7:1056462-1056481 None:intergenic 55.0%
TCTCCTGCAGTGAATCCAGG+AGG + Chr7:1056657-1056676 None:intergenic 55.0%
TGCAGGGAACTTGTGCAAGC+AGG - Chr7:1054674-1054693 MsG0780035993.01.T01:intron 55.0%
TGCTTACTTGGACGGTCTGG+AGG - Chr7:1055491-1055510 MsG0780035993.01.T01:intron 55.0%
! ACGGTGTCGGGTCCAATAAG+AGG + Chr7:1055909-1055928 None:intergenic 55.0%
! CTGTTGGTTGGTGTCCTTGC+AGG - Chr7:1053638-1053657 MsG0780035993.01.T01:intron 55.0%
! TAACGCTGGTTGAAGCCCAC+AGG + Chr7:1055851-1055870 None:intergenic 55.0%
!! CTGGTAAGCCAGTGCTGCTT+GGG + Chr7:1055757-1055776 None:intergenic 55.0%
AGCAGTAGCCCAAGCAGCAC+TGG - Chr7:1055746-1055765 MsG0780035993.01.T01:intron 60.0%
AGCCCTTGATCTACGCGGCA+AGG - Chr7:1055620-1055639 MsG0780035993.01.T01:intron 60.0%
AGGCGTCACTAGCAACCCAG+CGG - Chr7:1053810-1053829 MsG0780035993.01.T01:intron 60.0%
CAGCCTCCTGGATTCACTGC+AGG - Chr7:1056651-1056670 MsG0780035993.01.T01:intron 60.0%
CCGCGTAGATCAAGGGCTTC+TGG + Chr7:1055618-1055637 None:intergenic 60.0%
CGACGCGACACCAACACATG+AGG + Chr7:1055248-1055267 None:intergenic 60.0%
GGGACACATGCAGCTGTAGC+TGG + Chr7:1054914-1054933 None:intergenic 60.0%
! GCTGGTAAGCCAGTGCTGCT+TGG + Chr7:1055758-1055777 None:intergenic 60.0%
!! TGGACGGTCTGGAGGCATCT+GGG - Chr7:1055499-1055518 MsG0780035993.01.T01:intron 60.0%
!! TTGGACGGTCTGGAGGCATC+TGG - Chr7:1055498-1055517 MsG0780035993.01.T01:intron 60.0%
!! TCGATCACGGTGCCGTAGCC+AGG - Chr7:1056500-1056519 MsG0780035993.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr7 gene 1051965 1057126 1051965 ID=MsG0780035993.01;Name=MsG0780035993.01
Chr7 mRNA 1051965 1057126 1051965 ID=MsG0780035993.01.T01;Parent=MsG0780035993.01;Name=MsG0780035993.01.T01;_AED=0.33;_eAED=0.33;_QI=32|0.83|0.85|1|1|1|7|418|440
Chr7 exon 1051965 1052628 1051965 ID=MsG0780035993.01.T01:exon:15605;Parent=MsG0780035993.01.T01
Chr7 exon 1053165 1053347 1053165 ID=MsG0780035993.01.T01:exon:15604;Parent=MsG0780035993.01.T01
Chr7 exon 1053450 1053638 1053450 ID=MsG0780035993.01.T01:exon:15603;Parent=MsG0780035993.01.T01
Chr7 exon 1054112 1054412 1054112 ID=MsG0780035993.01.T01:exon:15602;Parent=MsG0780035993.01.T01
Chr7 exon 1054960 1055000 1054960 ID=MsG0780035993.01.T01:exon:15601;Parent=MsG0780035993.01.T01
Chr7 exon 1055260 1055431 1055260 ID=MsG0780035993.01.T01:exon:15600;Parent=MsG0780035993.01.T01
Chr7 exon 1056904 1057126 1056904 ID=MsG0780035993.01.T01:exon:15599;Parent=MsG0780035993.01.T01
Chr7 five_prime_UTR 1057095 1057126 1057095 ID=MsG0780035993.01.T01:five_prime_utr;Parent=MsG0780035993.01.T01
Chr7 CDS 1056904 1057094 1056904 ID=MsG0780035993.01.T01:cds;Parent=MsG0780035993.01.T01
Chr7 CDS 1055260 1055431 1055260 ID=MsG0780035993.01.T01:cds;Parent=MsG0780035993.01.T01
Chr7 CDS 1054960 1055000 1054960 ID=MsG0780035993.01.T01:cds;Parent=MsG0780035993.01.T01
Chr7 CDS 1054112 1054412 1054112 ID=MsG0780035993.01.T01:cds;Parent=MsG0780035993.01.T01
Chr7 CDS 1053450 1053638 1053450 ID=MsG0780035993.01.T01:cds;Parent=MsG0780035993.01.T01
Chr7 CDS 1053165 1053347 1053165 ID=MsG0780035993.01.T01:cds;Parent=MsG0780035993.01.T01
Chr7 CDS 1052383 1052628 1052383 ID=MsG0780035993.01.T01:cds;Parent=MsG0780035993.01.T01
Chr7 three_prime_UTR 1051965 1052382 1051965 ID=MsG0780035993.01.T01:three_prime_utr;Parent=MsG0780035993.01.T01
Gene Sequence

>MsG0780035993.01.T01

ATGGCTTCTTCACTTTCCGTTTCTAAGATCACAACACCAAACACAAACCGCGCTTCTTTACCAGAATCTCTTCGATCCAGATCCATCAAAACGAGCTTCTTACCTTTCAACAATACAAATGATTTCAAAACTAACCTCTCTGCTTCTTCTTTAAGAACAACTCGTGAAAACCGTTTTGTAACGTCTTTGAGGATTAGATGCTCACAAACAGATGAAAATGGAGTTCCTGCAAAGAGGACGGTTCTTCATGATCTTTATGAGAAACAAGGGCAGAGTCCATGGTATGATAATCTCTGCCGACCCGTTACGGATCTGATTCCTCTTATTGAAAGTGGTGTTAGAGGCGTCACTAGCAACCCAGCGAAAGCTATTTCATCTTCAAGTGCTTACAATGATCAATTCAGGGAACTTGTGCAAGCAGGGAAAGACATTGACAGTGCATACTGGGAACTTGTAGTGAAGGACATTCAAGATGCTTGCAAACTATTTGAATCAATTTATGATCAAACTGATGGAGGTGATGGCTATGTTTCTGTTGAAGTATCTCCTAGGCTTGCTGAGGATACTGAAGGAACCATAGAAGCTGCAAAATGGCTTCATAAAGTGGTTTCTCGCCCCAATGTGTATATTAAGATTCCAGCTACAGCTGCATGTGTCCCTTCAATTAAGGAAGTTATCGCCAATGGAATAAGTGTGAACGTGACTCTGATATTCTCCCTTGAAAGATATGAAGCTGTAATTGATGCTTACTTGGACGGTCTGGAGGCATCTGGGTTAAATGACCTCTCTAGAGTCACAAGTGTTGCCTCGTTCTTTGTCAGTCGAGTGGACACTCTCATTGACAAGATGCTTGAGAAAATTGGCACCCCAGAAGCCCTTGATCTACGCGGCAAGGCAGCAGTAGCCCAAGCAGCACTGGCTTACCAGCTATACCAAAAGAAATTTTCTGGCCCAAGGTGGGAAGCTCTAGTTAAAAAAGGGGCCAAGAAGCAAAGGCTCCTGTGGGCTTCAACCAGCGTTAAGAATCCTGCCTATCCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACCGTATCTACCATGCCAGACCAAGCACTTCAAGCATTTATCGATCACGGTGCCGTAGCCAGGACAATAGACTCAAATGCATCTGAAGCTGAAGGAATATACAATGCTATCCAGAAGTTGGGTATTGATTGGAGCTATGTTGGTTCACAGCTTGAATTGGAAGGAGTTGATTCATTCAAGAAAGCCTTTGACAGCCTCCTGGATTCACTGCAGGAGAAGGCAAAATCTCTTAAGCTGGTCAGCAAGTGA

Protein sequence

>MsG0780035993.01.T01

MASSLSVSKITTPNTNRASLPESLRSRSIKTSFLPFNNTNDFKTNLSASSLRTTRENRFVTSLRIRCSQTDENGVPAKRTVLHDLYEKQGQSPWYDNLCRPVTDLIPLIESGVRGVTSNPAKAISSSSAYNDQFRELVQAGKDIDSAYWELVVKDIQDACKLFESIYDQTDGGDGYVSVEVSPRLAEDTEGTIEAAKWLHKVVSRPNVYIKIPATAACVPSIKEVIANGISVNVTLIFSLERYEAVIDAYLDGLEASGLNDLSRVTSVASFFVSRVDTLIDKMLEKIGTPEALDLRGKAAVAQAALAYQLYQKKFSGPRWEALVKKGAKKQRLLWASTSVKNPAYPDTLYVAPLIGPDTVSTMPDQALQAFIDHGAVARTIDSNASEAEGIYNAIQKLGIDWSYVGSQLELEGVDSFKKAFDSLLDSLQEKAKSLKLVSK*