AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380015828.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380015828.01.T01 MTR_3g078320 74.667 225 14 3 32 234 1 204 3.86e-112 321
MsG0380015828.01.T01 MTR_3g078320 80.682 176 13 2 32 207 1 155 1.73e-95 277
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380015828.01.T01 AT5G50100 46.000 200 59 3 56 233 20 192 1.60e-52 169

Find 90 sgRNAs with CRISPR-Local

Find 221 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATACACATTGCAGCAAAATT+TGG 0.186588 3:-75650988 None:intergenic
TTGCAGCAAAATTTGGAAAA+AGG 0.225751 3:-75650981 None:intergenic
AAACCATTGATATTCGATTA+GGG 0.259655 3:-75648073 None:intergenic
GTGCTACACGCGCCAGGTTT+TGG 0.283615 3:-75651427 None:intergenic
AAAACCATTGATATTCGATT+AGG 0.292160 3:-75648074 None:intergenic
GCCACGCGGCGCTGCTTCAT+TGG 0.310704 3:+75651404 MsG0380015828.01.T01:three_prime_UTR
CGCCGCGTGGCATCCGGTGC+AGG 0.315603 3:-75651392 None:intergenic
TTACAAAATGCATTCGGTAT+AGG 0.335148 3:+75650936 MsG0380015828.01.T01:three_prime_UTR
ACACGCGAGCTTTGGTGCTT+TGG 0.337061 3:+75647827 MsG0380015828.01.T01:CDS
CAGGTTTCAATTGTGTTGAA+TGG 0.353510 3:-75651373 None:intergenic
AAATACCGTCTTCAAGTTAC+AGG 0.354145 3:+75649795 MsG0380015828.01.T01:CDS
TTACTCTCCCGACGAGAATC+AGG 0.359294 3:+75648767 MsG0380015828.01.T01:CDS
AAAACAATGGAGAGAGAAAA+AGG 0.360858 3:+75651092 MsG0380015828.01.T01:three_prime_UTR
AGAGACTTGGATCATTTCAT+TGG 0.361891 3:+75651648 MsG0380015828.01.T01:three_prime_UTR
AAGCGCGAACACGCGAGCTT+TGG 0.374337 3:+75647819 MsG0380015828.01.T01:CDS
GAGTGGTGATGATGGGTTAT+GGG 0.375099 3:-75647955 None:intergenic
AAGCAGCGCCGCGTGGCATC+CGG 0.375580 3:-75651398 None:intergenic
GCCTATATCAACAAACTTGA+TGG 0.376854 3:-75648736 None:intergenic
ACCATCAAGTTTGTTGATAT+AGG 0.406883 3:+75648735 MsG0380015828.01.T01:CDS
TGTACCTCTCGCATGCATAA+TGG 0.408229 3:-75648530 None:intergenic
ATTGCAAATGGTAAGACTTA+AGG 0.409611 3:-75651256 None:intergenic
GGGGATACCGGTTTGAGAAT+AGG 0.424555 3:-75648053 None:intergenic
AACACTTCCTATTCTCAAAC+CGG 0.434014 3:+75648046 MsG0380015828.01.T01:CDS
AGAGTGGTGATGATGGGTTA+TGG 0.434759 3:-75647956 None:intergenic
TGCACACTCACGCTCCTTGT+CGG 0.446013 3:-75651455 None:intergenic
GAGAACAGTCTCCTAAAGAT+TGG 0.446474 3:+75648477 MsG0380015828.01.T01:CDS
TGGAATTTAAGATTGTGAAA+TGG 0.448918 3:-75647987 None:intergenic
TCCCTGGTTTGGTTGTGGAT+TGG 0.452797 3:-75647880 None:intergenic
TGTTGAATCTGACATTCAAC+AGG 0.453911 3:+75651284 MsG0380015828.01.T01:three_prime_UTR
GCGCGTGTGCTACACGCGCC+AGG 0.454575 3:-75651433 None:intergenic
CTGCTTCATTGGCCAAAACC+TGG 0.455041 3:+75651415 MsG0380015828.01.T01:three_prime_UTR
AGGTTTCAATTGTGTTGAAT+GGG 0.458853 3:-75651372 None:intergenic
TCTTATTTACAAAATGCATT+CGG 0.460783 3:+75650930 MsG0380015828.01.T01:three_prime_UTR
CTCCAATCCACAACCAAACC+AGG 0.471077 3:+75647878 MsG0380015828.01.T01:CDS
GATATTCGATTAGGGGATAC+CGG 0.474188 3:-75648065 None:intergenic
CGAGAGAAGAATAAGAGTTA+TGG 0.482537 3:+75648711 MsG0380015828.01.T01:CDS
GTCCGAAAGTTGTCCAAAAG+TGG 0.488338 3:+75651159 MsG0380015828.01.T01:three_prime_UTR
TTCAACACAACCATTGCAAA+TGG 0.493580 3:-75651268 None:intergenic
AAGATTAAAATGCTATATGA+TGG 0.504605 3:+75648500 MsG0380015828.01.T01:CDS
GGTTGTGGATTGGAGATGGA+AGG 0.508644 3:-75647870 None:intergenic
ATTCATGCTATTCTATCAGA+TGG 0.517070 3:+75649089 MsG0380015828.01.T01:CDS
GTTTGGTTGTGGATTGGAGA+TGG 0.522053 3:-75647874 None:intergenic
ATCCCCTAATCGAATATCAA+TGG 0.529512 3:+75648070 MsG0380015828.01.T01:CDS
AGCTTCTAATATTCTTCGAT+AGG 0.533109 3:-75650242 None:intergenic
TTTCTCTACAAATAGAGACT+TGG 0.534919 3:+75651635 MsG0380015828.01.T01:three_prime_UTR
GTGAAAGATGAGGACGGAGA+TGG 0.540320 3:-75648007 None:intergenic
ATTAGAAGCTCGAAGAAAGA+AGG 0.540646 3:+75650255 MsG0380015828.01.T01:exon
GGTGAAAAGAGTGGTGATGA+TGG 0.546710 3:-75647963 None:intergenic
TCGAGGCCCTGATTCTCGTC+GGG 0.546724 3:-75648774 None:intergenic
TTAAGTCTTACCATTTGCAA+TGG 0.552473 3:+75651258 MsG0380015828.01.T01:three_prime_UTR
GACAAGTGGTGCAACATGAT+TGG 0.553913 3:+75651515 MsG0380015828.01.T01:three_prime_UTR
GGTTTGAGAATAGGAAGTGT+TGG 0.559230 3:-75648044 None:intergenic
TTCTAATATTCTTCGATAGG+TGG 0.560433 3:-75650239 None:intergenic
CAAAATGCATTCGGTATAGG+TGG 0.560799 3:+75650939 MsG0380015828.01.T01:three_prime_UTR
ATTTCTCATATAAAATGCAC+TGG 0.561902 3:+75651195 MsG0380015828.01.T01:three_prime_UTR
AAACGAATTCTGTGGGAAGG+AGG 0.565927 3:+75651492 MsG0380015828.01.T01:three_prime_UTR
GCCAATGAAGCAGCGCCGCG+TGG 0.566020 3:-75651405 None:intergenic
GAGCGTGAGTGTGCAGAGGA+CGG 0.572775 3:+75651463 MsG0380015828.01.T01:three_prime_UTR
TACAATTTCTAAGAAAGAAG+AGG 0.573127 3:+75648451 MsG0380015828.01.T01:CDS
GTCGAGGCCCTGATTCTCGT+CGG 0.574141 3:-75648775 None:intergenic
GTAAGACTTAAGGAGACTAC+AGG 0.574524 3:-75651246 None:intergenic
GAGAAACGAATTCTGTGGGA+AGG 0.577625 3:+75651489 MsG0380015828.01.T01:three_prime_UTR
AGTGGTGATGATGGGTTATG+GGG 0.578389 3:-75647954 None:intergenic
GATGTAAATTTCCATCTGAC+CGG 0.580067 3:+75650863 MsG0380015828.01.T01:three_prime_UTR
AACGAATTCTGTGGGAAGGA+GGG 0.585003 3:+75651493 MsG0380015828.01.T01:three_prime_UTR
TGACCGGTGAAAACTTCAGA+AGG 0.588569 3:+75650879 MsG0380015828.01.T01:three_prime_UTR
TACTCTCCCGACGAGAATCA+GGG 0.588982 3:+75648768 MsG0380015828.01.T01:CDS
AACCATTGATATTCGATTAG+GGG 0.590174 3:-75648072 None:intergenic
AACAGGCAAAAGCATTGCAA+TGG 0.597321 3:+75651301 MsG0380015828.01.T01:three_prime_UTR
AACACAATTGAAACCTGCAC+CGG 0.600706 3:+75651379 MsG0380015828.01.T01:three_prime_UTR
GAGAGAGAAACGAATTCTGT+GGG 0.601858 3:+75651485 MsG0380015828.01.T01:three_prime_UTR
CTGTGGGAAGGAGGGACAAG+TGG 0.606154 3:+75651501 MsG0380015828.01.T01:three_prime_UTR
AATTTCTAAGAAAGAAGAGG+AGG 0.606166 3:+75648454 MsG0380015828.01.T01:CDS
ATTTCTAAGAAAGAAGAGGA+GGG 0.607445 3:+75648455 MsG0380015828.01.T01:CDS
GGAGAGAGAAACGAATTCTG+TGG 0.608516 3:+75651484 MsG0380015828.01.T01:three_prime_UTR
AAGAAGCCATACTTCGACAT+CGG 0.610113 3:-75649123 None:intergenic
ATTTACCTGTAACTTGAAGA+CGG 0.611328 3:-75649800 None:intergenic
GTGAAAAGAGTGGTGATGAT+GGG 0.613615 3:-75647962 None:intergenic
GTGTAGCACACGCGCCGACA+AGG 0.620311 3:+75651441 MsG0380015828.01.T01:three_prime_UTR
AGGAAGTGTTGGAAAAGCAT+CGG 0.623406 3:-75648033 None:intergenic
ATGTGTGTTGAATGAAGACA+TGG 0.639482 3:+75651332 MsG0380015828.01.T01:three_prime_UTR
CAAGGAGCGTGAGTGTGCAG+AGG 0.641941 3:+75651459 MsG0380015828.01.T01:three_prime_UTR
GACTAACAGTTTGATAGTCG+AGG 0.648679 3:-75648791 None:intergenic
AATTTAAGATTGTGAAATGG+AGG 0.655857 3:-75647984 None:intergenic
AACCTGCACCGGATGCCACG+CGG 0.659218 3:+75651390 MsG0380015828.01.T01:three_prime_UTR
GCATCGGCGTGTGAAAGATG+AGG 0.663047 3:-75648017 None:intergenic
CGGCGTGTGAAAGATGAGGA+CGG 0.668499 3:-75648013 None:intergenic
TCCAATCCACAACCAAACCA+GGG 0.670806 3:+75647879 MsG0380015828.01.T01:CDS
TTGTCCATTATGCATGCGAG+AGG 0.675961 3:+75648526 MsG0380015828.01.T01:CDS
TGAAATGGAGGTGAAAAGAG+TGG 0.691751 3:-75647972 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATATGGTATAACATTATT+AGG + Chr3:75650646-75650665 MsG0380015828.01.T01:intron 15.0%
!! AGTATAATTAATTATTAACG+TGG + Chr3:75650094-75650113 MsG0380015828.01.T01:intron 15.0%
!! ATTCTATAAAAATTTGAACA+TGG - Chr3:75649229-75649248 None:intergenic 15.0%
!! CAATTAAAGCATAAATTAAA+AGG - Chr3:75650197-75650216 None:intergenic 15.0%
!!! AAAGCTGATTTATTTATTTT+TGG + Chr3:75648829-75648848 MsG0380015828.01.T01:intron 15.0%
!!! TGTTTTTGTTTATTATAGAT+GGG - Chr3:75650560-75650579 None:intergenic 15.0%
!! AAGATTAAAATGCTATATGA+TGG + Chr3:75648500-75648519 MsG0380015828.01.T01:CDS 20.0%
!! AATAAAAAGTGACAAAAACA+AGG - Chr3:75651067-75651086 None:intergenic 20.0%
!! ATAATTAATTATTAACGTGG+CGG + Chr3:75650097-75650116 MsG0380015828.01.T01:intron 20.0%
!! ATATCCAGATAATGATATTA+AGG - Chr3:75649183-75649202 None:intergenic 20.0%
!! GTAAAAATAGAATTTCATAC+TGG - Chr3:75649551-75649570 None:intergenic 20.0%
!! TATCCAGATAATGATATTAA+GGG - Chr3:75649182-75649201 None:intergenic 20.0%
!! TATTGTAATTGTTCTTTCTA+TGG + Chr3:75649871-75649890 MsG0380015828.01.T01:intron 20.0%
!! TATTTATATCTAACTCTTAC+TGG - Chr3:75649345-75649364 None:intergenic 20.0%
!! TTAAACAATATTCACAGATT+GGG + Chr3:75649739-75649758 MsG0380015828.01.T01:intron 20.0%
!! TTACAATATTACTTACTACA+TGG - Chr3:75649859-75649878 None:intergenic 20.0%
!! TTGGTTCATTATGTTATTAA+TGG + Chr3:75649714-75649733 MsG0380015828.01.T01:intron 20.0%
!!! AATTGACTCTATTCAAATAT+TGG + Chr3:75650693-75650712 MsG0380015828.01.T01:intron 20.0%
!!! ATGATTTTTGTTTTCCTTTT+AGG + Chr3:75649055-75649074 MsG0380015828.01.T01:intron 20.0%
!!! ATTCTCTTTAAAAATTCAGA+TGG - Chr3:75650396-75650415 None:intergenic 20.0%
!!! ATTTTAATCTTCCAATCTTT+AGG - Chr3:75648491-75648510 None:intergenic 20.0%
!!! CTGTTTTTGTTTATTATAGA+TGG - Chr3:75650561-75650580 None:intergenic 20.0%
!!! TATTTTCAATCCTTTTTACA+GGG + Chr3:75650810-75650829 MsG0380015828.01.T01:intron 20.0%
!!! TCTTATTTACAAAATGCATT+CGG + Chr3:75650930-75650949 MsG0380015828.01.T01:three_prime_UTR 20.0%
!!! TCTTTGTTTTTTGTTTTGTA+GGG + Chr3:75648384-75648403 MsG0380015828.01.T01:intron 20.0%
!!! TGATTCTGTATATAGTTTTT+GGG + Chr3:75649770-75649789 MsG0380015828.01.T01:CDS 20.0%
!!! TGTTTGTTCATTAATTTGTT+TGG + Chr3:75648881-75648900 MsG0380015828.01.T01:intron 20.0%
!!! TTATTTTCAATCCTTTTTAC+AGG + Chr3:75650809-75650828 MsG0380015828.01.T01:intron 20.0%
!!! TTCTTTGTTTTTTGTTTTGT+AGG + Chr3:75648383-75648402 MsG0380015828.01.T01:intron 20.0%
!!! TTGTTTTTGTCACTTTTTAT+TGG + Chr3:75651066-75651085 MsG0380015828.01.T01:three_prime_UTR 20.0%
!!! TTTTAATCTTCTTAATGCTT+TGG + Chr3:75651548-75651567 MsG0380015828.01.T01:three_prime_UTR 20.0%
!!! TTTTTATTGGTCAAAAACAA+TGG + Chr3:75651079-75651098 MsG0380015828.01.T01:three_prime_UTR 20.0%
! AAAACCATTGATATTCGATT+AGG - Chr3:75648077-75648096 None:intergenic 25.0%
! AAACCATTGATATTCGATTA+GGG - Chr3:75648076-75648095 None:intergenic 25.0%
! AACCACCAATGATAATAATA+AGG - Chr3:75648335-75648354 None:intergenic 25.0%
! AACCTTATTATTATCATTGG+TGG + Chr3:75648330-75648349 MsG0380015828.01.T01:intron 25.0%
! ATTTCTCATATAAAATGCAC+TGG + Chr3:75651195-75651214 MsG0380015828.01.T01:three_prime_UTR 25.0%
! CAACTATACCCAAATTAATA+GGG - Chr3:75650495-75650514 None:intergenic 25.0%
! CCAAACCTTATTATTATCAT+TGG + Chr3:75648327-75648346 MsG0380015828.01.T01:intron 25.0%
! CCAATGATAATAATAAGGTT+TGG - Chr3:75648330-75648349 None:intergenic 25.0%
! CTAAAAGTAATACCTTAGAT+GGG + Chr3:75649894-75649913 MsG0380015828.01.T01:intron 25.0%
! GCAATGAAAATTAACACAAA+AGG + Chr3:75650354-75650373 MsG0380015828.01.T01:intron 25.0%
! GTTAAACAATATTCACAGAT+TGG + Chr3:75649738-75649757 MsG0380015828.01.T01:intron 25.0%
! TAAAATCAGGAAAATGAAGA+TGG + Chr3:75650332-75650351 MsG0380015828.01.T01:intron 25.0%
! TAGTCTATCCCTATTAATTT+GGG + Chr3:75650484-75650503 MsG0380015828.01.T01:intron 25.0%
! TATTAAGGGTCTACAATTAT+AGG - Chr3:75649168-75649187 None:intergenic 25.0%
! TCAACTATACCCAAATTAAT+AGG - Chr3:75650496-75650515 None:intergenic 25.0%
! TGAAAATATGTTACCAACAT+TGG - Chr3:75650725-75650744 None:intergenic 25.0%
! TGTAATATGCATAACAATAC+AGG + Chr3:75650746-75650765 MsG0380015828.01.T01:intron 25.0%
! TGTTTCTTCAGAATAAAATC+AGG + Chr3:75650319-75650338 MsG0380015828.01.T01:intron 25.0%
! TTAGTCTATCCCTATTAATT+TGG + Chr3:75650483-75650502 MsG0380015828.01.T01:intron 25.0%
! TTTACAAGCAATGAATTGAT+TGG + Chr3:75648976-75648995 MsG0380015828.01.T01:intron 25.0%
!! AATTTAAGATTGTGAAATGG+AGG - Chr3:75647987-75648006 None:intergenic 25.0%
!! ATGCTTTAATTGTTCGTTTT+TGG + Chr3:75650205-75650224 MsG0380015828.01.T01:intron 25.0%
!! CTGATTCTGTATATAGTTTT+TGG + Chr3:75649769-75649788 MsG0380015828.01.T01:CDS 25.0%
!! TACAATTTCTAAGAAAGAAG+AGG + Chr3:75648451-75648470 MsG0380015828.01.T01:CDS 25.0%
!! TACTTACTACATGGAAATTT+TGG - Chr3:75649850-75649869 None:intergenic 25.0%
!! TCATCAGATTTTAAATTAGC+AGG - Chr3:75648192-75648211 None:intergenic 25.0%
!! TGGAATTTAAGATTGTGAAA+TGG - Chr3:75647990-75648009 None:intergenic 25.0%
!!! GTGCTGATTTTTGTTTTTAT+GGG + Chr3:75650784-75650803 MsG0380015828.01.T01:intron 25.0%
!!! TGAAATTCTATTTTTACTGC+AGG + Chr3:75649554-75649573 MsG0380015828.01.T01:intron 25.0%
AAAACAATGGAGAGAGAAAA+AGG + Chr3:75651092-75651111 MsG0380015828.01.T01:three_prime_UTR 30.0%
AAAGTGAAAAAACCCATCTA+AGG - Chr3:75649909-75649928 None:intergenic 30.0%
AACACAAAAGGAATTTCAGT+CGG + Chr3:75650366-75650385 MsG0380015828.01.T01:intron 30.0%
AACCATTGATATTCGATTAG+GGG - Chr3:75648075-75648094 None:intergenic 30.0%
AGACCCTTAATATCATTATC+TGG + Chr3:75649176-75649195 MsG0380015828.01.T01:intron 30.0%
AGCTTCTAATATTCTTCGAT+AGG - Chr3:75650245-75650264 None:intergenic 30.0%
AGGAGATTATATGAACAAGT+TGG + Chr3:75649582-75649601 MsG0380015828.01.T01:intron 30.0%
AGGTTTCAATTGTGTTGAAT+GGG - Chr3:75651375-75651394 None:intergenic 30.0%
AGTGATGATCTTATTGATGA+TGG - Chr3:75650052-75650071 None:intergenic 30.0%
ATACACATTGCAGCAAAATT+TGG - Chr3:75650991-75651010 None:intergenic 30.0%
ATTCATGCTATTCTATCAGA+TGG + Chr3:75649089-75649108 MsG0380015828.01.T01:CDS 30.0%
ATTGCAAATGGTAAGACTTA+AGG - Chr3:75651259-75651278 None:intergenic 30.0%
ATTTACCTGTAACTTGAAGA+CGG - Chr3:75649803-75649822 None:intergenic 30.0%
CACAGCAAAATGCTAAAATA+TGG + Chr3:75650631-75650650 MsG0380015828.01.T01:intron 30.0%
CATGCTTAGTAGAAATGATA+TGG + Chr3:75649952-75649971 MsG0380015828.01.T01:intron 30.0%
GCTAAAAGTAATACCTTAGA+TGG + Chr3:75649893-75649912 MsG0380015828.01.T01:intron 30.0%
GGTTTCATATCTCAATTACT+AGG + Chr3:75648850-75648869 MsG0380015828.01.T01:intron 30.0%
TAATAGGGATAGACTAATCA+AGG - Chr3:75650480-75650499 None:intergenic 30.0%
TATAGTTAGCATAACCATAG+AGG - Chr3:75650158-75650177 None:intergenic 30.0%
TCAATGAATGACATGAAACA+AGG - Chr3:75648641-75648660 None:intergenic 30.0%
TGAACTAAAACAAAACTTGC+AGG - Chr3:75648167-75648186 None:intergenic 30.0%
TTAAGTCTTACCATTTGCAA+TGG + Chr3:75651258-75651277 MsG0380015828.01.T01:three_prime_UTR 30.0%
TTACAAAATGCATTCGGTAT+AGG + Chr3:75650936-75650955 MsG0380015828.01.T01:three_prime_UTR 30.0%
TTCATGAACATCAACAAATG+TGG + Chr3:75648915-75648934 MsG0380015828.01.T01:intron 30.0%
TTCTAATATTCTTCGATAGG+TGG - Chr3:75650242-75650261 None:intergenic 30.0%
TTGCAGCAAAATTTGGAAAA+AGG - Chr3:75650984-75651003 None:intergenic 30.0%
TTGTTTATTATAGATGGGCA+TGG - Chr3:75650555-75650574 None:intergenic 30.0%
TTTCTCTACAAATAGAGACT+TGG + Chr3:75651635-75651654 MsG0380015828.01.T01:three_prime_UTR 30.0%
! AATTTCTAAGAAAGAAGAGG+AGG + Chr3:75648454-75648473 MsG0380015828.01.T01:CDS 30.0%
! ATTTCTAAGAAAGAAGAGGA+GGG + Chr3:75648455-75648474 MsG0380015828.01.T01:CDS 30.0%
! TAGTATACATGCTCATCTTT+TGG - Chr3:75649314-75649333 None:intergenic 30.0%
! TCTTCCTACCATACTTTTAA+AGG + Chr3:75649646-75649665 MsG0380015828.01.T01:intron 30.0%
! TTGTTTTCCTTTTAGGCTAT+GGG + Chr3:75649062-75649081 MsG0380015828.01.T01:intron 30.0%
! TTTTCACTTTAGTTGGACTT+GGG + Chr3:75649919-75649938 MsG0380015828.01.T01:intron 30.0%
! TTTTCTGCAGTAAAGCTAAA+GGG - Chr3:75649689-75649708 None:intergenic 30.0%
! TTTTTCACTTTAGTTGGACT+TGG + Chr3:75649918-75649937 MsG0380015828.01.T01:intron 30.0%
! TTTTTCTGCAGTAAAGCTAA+AGG - Chr3:75649690-75649709 None:intergenic 30.0%
!! AACCGGTTCATATTTTGTAA+TGG - Chr3:75649624-75649643 None:intergenic 30.0%
!! ACCATCAAGTTTGTTGATAT+AGG + Chr3:75648735-75648754 MsG0380015828.01.T01:CDS 30.0%
!! CTCTATTCAAATATTGGTTC+AGG + Chr3:75650699-75650718 MsG0380015828.01.T01:intron 30.0%
!! TCTTTGATTTTTGCAACATG+AGG - Chr3:75650519-75650538 None:intergenic 30.0%
!! TTAGCTTTACTGCAGAAAAA+TGG + Chr3:75649690-75649709 MsG0380015828.01.T01:intron 30.0%
!! TTATATGAACAAGTTGGTCT+TGG + Chr3:75649588-75649607 MsG0380015828.01.T01:intron 30.0%
!! TTTGTTTTCCTTTTAGGCTA+TGG + Chr3:75649061-75649080 MsG0380015828.01.T01:intron 30.0%
!!! AATTGTTCGTTTTTGGTTTC+AGG + Chr3:75650212-75650231 MsG0380015828.01.T01:intron 30.0%
!!! ATGGGTTTTTTCACTTTAGT+TGG + Chr3:75649912-75649931 MsG0380015828.01.T01:intron 30.0%
!!! GATATTTTGACAACCACTTT+TGG - Chr3:75651175-75651194 None:intergenic 30.0%
!!! GGTGCTGATTTTTGTTTTTA+TGG + Chr3:75650783-75650802 MsG0380015828.01.T01:intron 30.0%
!!! TGAAAGACATTTTTTTTCCC+TGG - Chr3:75647899-75647918 None:intergenic 30.0%
!!! TTGTTGCTATTTGTCGTTTT+AGG + Chr3:75648677-75648696 MsG0380015828.01.T01:intron 30.0%
AACACTTCCTATTCTCAAAC+CGG + Chr3:75648046-75648065 MsG0380015828.01.T01:CDS 35.0%
AATGACATCCATTAATGCAG+AGG + Chr3:75649458-75649477 MsG0380015828.01.T01:intron 35.0%
AATTCTTCCCATAGCCTAAA+AGG - Chr3:75649072-75649091 None:intergenic 35.0%
ACTTAAGTCCTCTGCATTAA+TGG - Chr3:75649469-75649488 None:intergenic 35.0%
AGAGACTTGGATCATTTCAT+TGG + Chr3:75651648-75651667 MsG0380015828.01.T01:three_prime_UTR 35.0%
AGTCCAATAAGCTTACGTTA+AGG - Chr3:75648222-75648241 None:intergenic 35.0%
AGTCCTTAACGTAAGCTTAT+TGG + Chr3:75648216-75648235 MsG0380015828.01.T01:intron 35.0%
ATAGACTAATCAAGGCAATG+GGG - Chr3:75650472-75650491 None:intergenic 35.0%
ATCCCCTAATCGAATATCAA+TGG + Chr3:75648070-75648089 MsG0380015828.01.T01:CDS 35.0%
ATGTGTGTTGAATGAAGACA+TGG + Chr3:75651332-75651351 MsG0380015828.01.T01:three_prime_UTR 35.0%
ATTAGAAGCTCGAAGAAAGA+AGG + Chr3:75650255-75650274 MsG0380015828.01.T01:exon 35.0%
CAGGTTTCAATTGTGTTGAA+TGG - Chr3:75651376-75651395 None:intergenic 35.0%
CCAAAATCAATGAACAAGTG+TGG + Chr3:75648561-75648580 MsG0380015828.01.T01:intron 35.0%
CGAGAGAAGAATAAGAGTTA+TGG + Chr3:75648711-75648730 MsG0380015828.01.T01:CDS 35.0%
CGCCATTACAAAATATGAAC+CGG + Chr3:75649619-75649638 MsG0380015828.01.T01:intron 35.0%
GATAGACTAATCAAGGCAAT+GGG - Chr3:75650473-75650492 None:intergenic 35.0%
GATGTAAATTTCCATCTGAC+CGG + Chr3:75650863-75650882 MsG0380015828.01.T01:three_prime_UTR 35.0%
GCCTATATCAACAAACTTGA+TGG - Chr3:75648739-75648758 None:intergenic 35.0%
TGTTGAATCTGACATTCAAC+AGG + Chr3:75651284-75651303 MsG0380015828.01.T01:three_prime_UTR 35.0%
TTCAACACAACCATTGCAAA+TGG - Chr3:75651271-75651290 None:intergenic 35.0%
TTTACTGCAGAAAAATGGCT+TGG + Chr3:75649695-75649714 MsG0380015828.01.T01:intron 35.0%
TTTCAACTTCTATGTAACCC+CGG + Chr3:75649370-75649389 MsG0380015828.01.T01:intron 35.0%
! AAATACCGTCTTCAAGTTAC+AGG + Chr3:75649795-75649814 MsG0380015828.01.T01:CDS 35.0%
! AGTGAGAGTACAAATACTGA+GGG - Chr3:75649492-75649511 None:intergenic 35.0%
! ATACAGGTTTGAGTACTGTT+TGG + Chr3:75650762-75650781 MsG0380015828.01.T01:intron 35.0%
! CTCAATAGTTCTATGCTTCT+CGG - Chr3:75649991-75650010 None:intergenic 35.0%
! TCAATAGTTCTATGCTTCTC+GGG - Chr3:75649990-75650009 None:intergenic 35.0%
! TTCTGCGTCCTTTAAAAGTA+TGG - Chr3:75649657-75649676 None:intergenic 35.0%
!! AACCACTTTTGGACAACTTT+CGG - Chr3:75651164-75651183 None:intergenic 35.0%
!! TATTTTTACTGCAGGCGTTT+AGG + Chr3:75649562-75649581 MsG0380015828.01.T01:intron 35.0%
!!! CCACACTTGTTCATTGATTT+TGG - Chr3:75648564-75648583 None:intergenic 35.0%
!!! GACATTTTTTTTCCCTGGTT+TGG - Chr3:75647894-75647913 None:intergenic 35.0%
AACACAATTGAAACCTGCAC+CGG + Chr3:75651379-75651398 MsG0380015828.01.T01:three_prime_UTR 40.0%
AACTGTTAGTCCCTTCTCTA+TGG + Chr3:75648803-75648822 MsG0380015828.01.T01:intron 40.0%
AAGAAGCCATACTTCGACAT+CGG - Chr3:75649126-75649145 None:intergenic 40.0%
AGAGAGAAAAAGGAAGAGAG+AGG + Chr3:75651102-75651121 MsG0380015828.01.T01:three_prime_UTR 40.0%
AGTATGGTAGGAAGACTAAC+CGG - Chr3:75649641-75649660 None:intergenic 40.0%
CAAAATGCATTCGGTATAGG+TGG + Chr3:75650939-75650958 MsG0380015828.01.T01:three_prime_UTR 40.0%
GAGAACAGTCTCCTAAAGAT+TGG + Chr3:75648477-75648496 MsG0380015828.01.T01:CDS 40.0%
GAGAGAGAAACGAATTCTGT+GGG + Chr3:75651485-75651504 MsG0380015828.01.T01:three_prime_UTR 40.0%
GATATTCGATTAGGGGATAC+CGG - Chr3:75648068-75648087 None:intergenic 40.0%
GCATACTTCACCCTGTAAAA+AGG - Chr3:75650823-75650842 None:intergenic 40.0%
GGATAGACTAATCAAGGCAA+TGG - Chr3:75650474-75650493 None:intergenic 40.0%
GTAAGACTTAAGGAGACTAC+AGG - Chr3:75651249-75651268 None:intergenic 40.0%
TGAAATGGAGGTGAAAAGAG+TGG - Chr3:75647975-75647994 None:intergenic 40.0%
TGTCATACGAATCTGTTCAG+TGG + Chr3:75649511-75649530 MsG0380015828.01.T01:intron 40.0%
! AGGCATAGTGTTTAGAGTTC+TGG + Chr3:75650666-75650685 MsG0380015828.01.T01:intron 40.0%
! CAGTGAGAGTACAAATACTG+AGG - Chr3:75649493-75649512 None:intergenic 40.0%
! GACTAACAGTTTGATAGTCG+AGG - Chr3:75648794-75648813 None:intergenic 40.0%
! GCGTCCTTTAAAAGTATGGT+AGG - Chr3:75649653-75649672 None:intergenic 40.0%
! GGTTTGAGAATAGGAAGTGT+TGG - Chr3:75648047-75648066 None:intergenic 40.0%
! GTGAAAAGAGTGGTGATGAT+GGG - Chr3:75647965-75647984 None:intergenic 40.0%
!! AACAGGCAAAAGCATTGCAA+TGG + Chr3:75651301-75651320 MsG0380015828.01.T01:three_prime_UTR 40.0%
!! AGGAAGTGTTGGAAAAGCAT+CGG - Chr3:75648036-75648055 None:intergenic 40.0%
!! ATATTGGTTCAGGCCAATGT+TGG + Chr3:75650709-75650728 MsG0380015828.01.T01:intron 40.0%
!! ATGAACAAGTTGGTCTTGGT+TGG + Chr3:75649592-75649611 MsG0380015828.01.T01:intron 40.0%
!! CAGCTTTAGACCATAGAGAA+GGG - Chr3:75648816-75648835 None:intergenic 40.0%
!! TCAGCTTTAGACCATAGAGA+AGG - Chr3:75648817-75648836 None:intergenic 40.0%
!!! AAGCCTTCTGAAGTTTTCAC+CGG - Chr3:75650885-75650904 None:intergenic 40.0%
!!! TTTTTTCCCTGGTTTGGTTG+TGG - Chr3:75647888-75647907 None:intergenic 40.0%
AAACGAATTCTGTGGGAAGG+AGG + Chr3:75651492-75651511 MsG0380015828.01.T01:three_prime_UTR 45.0%
AACGAATTCTGTGGGAAGGA+GGG + Chr3:75651493-75651512 MsG0380015828.01.T01:three_prime_UTR 45.0%
ACTTCTATGTAACCCCGGAA+TGG + Chr3:75649375-75649394 MsG0380015828.01.T01:intron 45.0%
GACAAGTGGTGCAACATGAT+TGG + Chr3:75651515-75651534 MsG0380015828.01.T01:three_prime_UTR 45.0%
GAGAAACGAATTCTGTGGGA+AGG + Chr3:75651489-75651508 MsG0380015828.01.T01:three_prime_UTR 45.0%
GGAGAGAGAAACGAATTCTG+TGG + Chr3:75651484-75651503 MsG0380015828.01.T01:three_prime_UTR 45.0%
GTCCGAAAGTTGTCCAAAAG+TGG + Chr3:75651159-75651178 MsG0380015828.01.T01:three_prime_UTR 45.0%
TCCAATCCACAACCAAACCA+GGG + Chr3:75647879-75647898 MsG0380015828.01.T01:CDS 45.0%
TGACCGGTGAAAACTTCAGA+AGG + Chr3:75650879-75650898 MsG0380015828.01.T01:three_prime_UTR 45.0%
TGTACCTCTCGCATGCATAA+TGG - Chr3:75648533-75648552 None:intergenic 45.0%
TTGTCACCGATGTCGAAGTA+TGG + Chr3:75649117-75649136 MsG0380015828.01.T01:intron 45.0%
TTGTCCATTATGCATGCGAG+AGG + Chr3:75648526-75648545 MsG0380015828.01.T01:CDS 45.0%
! GGTGAAAAGAGTGGTGATGA+TGG - Chr3:75647966-75647985 None:intergenic 45.0%
! TGAAGTTTTCACCGGTCAGA+TGG - Chr3:75650877-75650896 None:intergenic 45.0%
!! AGAGTGGTGATGATGGGTTA+TGG - Chr3:75647959-75647978 None:intergenic 45.0%
!! AGTGGTGATGATGGGTTATG+GGG - Chr3:75647957-75647976 None:intergenic 45.0%
!! GAGTGGTGATGATGGGTTAT+GGG - Chr3:75647958-75647977 None:intergenic 45.0%
!! GTTTGGTTGTGGATTGGAGA+TGG - Chr3:75647877-75647896 None:intergenic 45.0%
AAAGATGCAGCAGCCATTCC+GGG - Chr3:75649391-75649410 None:intergenic 50.0%
CAAAGATGCAGCAGCCATTC+CGG - Chr3:75649392-75649411 None:intergenic 50.0%
CTCCAATCCACAACCAAACC+AGG + Chr3:75647878-75647897 MsG0380015828.01.T01:CDS 50.0%
CTGCTTCATTGGCCAAAACC+TGG + Chr3:75651415-75651434 MsG0380015828.01.T01:three_prime_UTR 50.0%
GATTGGTGCATGCATGTGTG+AGG + Chr3:75648993-75649012 MsG0380015828.01.T01:intron 50.0%
GTGAAAGATGAGGACGGAGA+TGG - Chr3:75648010-75648029 None:intergenic 50.0%
GTGAGCAAGACTTGCCTCTA+TGG + Chr3:75650141-75650160 MsG0380015828.01.T01:intron 50.0%
TACTCTCCCGACGAGAATCA+GGG + Chr3:75648768-75648787 MsG0380015828.01.T01:CDS 50.0%
TAGTTGGACTTGGGCTGATG+TGG + Chr3:75649928-75649947 MsG0380015828.01.T01:intron 50.0%
TTACTCTCCCGACGAGAATC+AGG + Chr3:75648767-75648786 MsG0380015828.01.T01:CDS 50.0%
!! GGGGATACCGGTTTGAGAAT+AGG - Chr3:75648056-75648075 None:intergenic 50.0%
!! GGTTGTGGATTGGAGATGGA+AGG - Chr3:75647873-75647892 None:intergenic 50.0%
!! TCCCTGGTTTGGTTGTGGAT+TGG - Chr3:75647883-75647902 None:intergenic 50.0%
AAGATGCAGCAGCCATTCCG+GGG - Chr3:75649390-75649409 None:intergenic 55.0%
CGGCGTGTGAAAGATGAGGA+CGG - Chr3:75648016-75648035 None:intergenic 55.0%
TGCACACTCACGCTCCTTGT+CGG - Chr3:75651458-75651477 None:intergenic 55.0%
! GCATCGGCGTGTGAAAGATG+AGG - Chr3:75648020-75648039 None:intergenic 55.0%
!! ACACGCGAGCTTTGGTGCTT+TGG + Chr3:75647827-75647846 MsG0380015828.01.T01:CDS 55.0%
AAGCGCGAACACGCGAGCTT+TGG + Chr3:75647819-75647838 MsG0380015828.01.T01:CDS 60.0%
CTGTGGGAAGGAGGGACAAG+TGG + Chr3:75651501-75651520 MsG0380015828.01.T01:three_prime_UTR 60.0%
GAGCGTGAGTGTGCAGAGGA+CGG + Chr3:75651463-75651482 MsG0380015828.01.T01:three_prime_UTR 60.0%
GTCGAGGCCCTGATTCTCGT+CGG - Chr3:75648778-75648797 None:intergenic 60.0%
TCGAGGCCCTGATTCTCGTC+GGG - Chr3:75648777-75648796 None:intergenic 60.0%
! CAAGGAGCGTGAGTGTGCAG+AGG + Chr3:75651459-75651478 MsG0380015828.01.T01:three_prime_UTR 60.0%
! GTGCTACACGCGCCAGGTTT+TGG - Chr3:75651430-75651449 None:intergenic 60.0%
AACCTGCACCGGATGCCACG+CGG + Chr3:75651390-75651409 MsG0380015828.01.T01:three_prime_UTR 65.0%
! GTGTAGCACACGCGCCGACA+AGG + Chr3:75651441-75651460 MsG0380015828.01.T01:three_prime_UTR 65.0%
AAGCAGCGCCGCGTGGCATC+CGG - Chr3:75651401-75651420 None:intergenic 70.0%
GCCAATGAAGCAGCGCCGCG+TGG - Chr3:75651408-75651427 None:intergenic 70.0%
GCCACGCGGCGCTGCTTCAT+TGG + Chr3:75651404-75651423 MsG0380015828.01.T01:three_prime_UTR 70.0%
GCGCGTGTGCTACACGCGCC+AGG - Chr3:75651436-75651455 None:intergenic 75.0%
! CGCCGCGTGGCATCCGGTGC+AGG - Chr3:75651395-75651414 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
Chr3 gene 75647816 75651695 75647816 ID=MsG0380015828.01;Name=MsG0380015828.01
Chr3 mRNA 75647816 75651695 75647816 ID=MsG0380015828.01.T01;Parent=MsG0380015828.01;Name=MsG0380015828.01.T01;_AED=0.30;_eAED=0.35;_QI=0|0.66|0.85|1|0.83|0.71|7|882|235
Chr3 exon 75650831 75651695 75650831 ID=MsG0380015828.01.T01:exon:22880;Parent=MsG0380015828.01.T01
Chr3 exon 75650234 75650276 75650234 ID=MsG0380015828.01.T01:exon:22879;Parent=MsG0380015828.01.T01
Chr3 exon 75649756 75649816 75649756 ID=MsG0380015828.01.T01:exon:22878;Parent=MsG0380015828.01.T01
Chr3 exon 75649077 75649133 75649077 ID=MsG0380015828.01.T01:exon:22877;Parent=MsG0380015828.01.T01
Chr3 exon 75648699 75648806 75648699 ID=MsG0380015828.01.T01:exon:22876;Parent=MsG0380015828.01.T01
Chr3 exon 75648405 75648547 75648405 ID=MsG0380015828.01.T01:exon:22875;Parent=MsG0380015828.01.T01
Chr3 exon 75647816 75648128 75647816 ID=MsG0380015828.01.T01:exon:22874;Parent=MsG0380015828.01.T01
Chr3 CDS 75647816 75648128 75647816 ID=MsG0380015828.01.T01:cds;Parent=MsG0380015828.01.T01
Chr3 CDS 75648405 75648547 75648405 ID=MsG0380015828.01.T01:cds;Parent=MsG0380015828.01.T01
Chr3 CDS 75648699 75648806 75648699 ID=MsG0380015828.01.T01:cds;Parent=MsG0380015828.01.T01
Chr3 CDS 75649077 75649133 75649077 ID=MsG0380015828.01.T01:cds;Parent=MsG0380015828.01.T01
Chr3 CDS 75649756 75649816 75649756 ID=MsG0380015828.01.T01:cds;Parent=MsG0380015828.01.T01
Chr3 CDS 75650234 75650259 75650234 ID=MsG0380015828.01.T01:cds;Parent=MsG0380015828.01.T01
Chr3 three_prime_UTR 75650260 75650276 75650260 ID=MsG0380015828.01.T01:three_prime_utr;Parent=MsG0380015828.01.T01
Chr3 three_prime_UTR 75650831 75651695 75650831 ID=MsG0380015828.01.T01:three_prime_utr;Parent=MsG0380015828.01.T01
Gene Sequence

>MsG0380015828.01.T01

ATGAAGCGCGAACACGCGAGCTTTGGTGCTTTGGTTTCTTTCTTTATACACAAACCTTCCATCTCCAATCCACAACCAAACCAGGGAAAAAAAATGTCTTTCAGAATCGCAGCAGTTTCTGCTTCTCGTATTGCAAAACCCCATAACCCATCATCACCACTCTTTTCACCTCCATTTCACAATCTTAAATTCCATCTCCGTCCTCATCTTTCACACGCCGATGCTTTTCCAACACTTCCTATTCTCAAACCGGTATCCCCTAATCGAATATCAATGGTTTTTGTAATTATTATTAAGTTTAAATATAATTTTAGGTCTCAATGTTATATTCGAGCTATTAGTGATAGAGCTGTAGAATCTACAATTTCTAAGAAAGAAGAGGAGGGAGAACAGTCTCCTAAAGATTGGAAGATTAAAATGCTATATGATGGAGATTGTCCATTATGCATGCGAGAGGTGAATATGCTACGAGAGAAGAATAAGAGTTATGGCACCATCAAGTTTGTTGATATAGGCTCAGATGATTACTCTCCCGACGAGAATCAGGGCCTCGACTATCAAACTGCTATGGGAAGAATTCATGCTATTCTATCAGATGGAACTGTTGTCACCGATGTCGAAATTGGGAAAATTGCTGATTCTGTATATAGTTTTTGGGCTAAATACCGTCTTCAAGTTACAGGACGACCACCTATCGAAGAATATTAG

Protein sequence

>MsG0380015828.01.T01

MKREHASFGALVSFFIHKPSISNPQPNQGKKMSFRIAAVSASRIAKPHNPSSPLFSPPFHNLKFHLRPHLSHADAFPTLPILKPVSPNRISMVFVIIIKFKYNFRSQCYIRAISDRAVESTISKKEEEGEQSPKDWKIKMLYDGDCPLCMREVNMLREKNKSYGTIKFVDIGSDDYSPDENQGLDYQTAMGRIHAILSDGTVVTDVEIGKIADSVYSFWAKYRLQVTGRPPIEEY*