AlfalfaGEDB | MsG0480019348.01

M. sativa cultivar ZhongmuNo.1 / MsG0480019348.01

KEGG: K00430
GO: GO:0004601 GO:0006979 GO:0020037 GO:0042744 GO:0055114
PFAM: PF00141

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480019348.01.T01	XP_013455188.1	94.551	312	17	0	121	432	10	321	0	613

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480019348.01.T01	Q9FLC0	62.29	297	108	3	138	432	30	324	3.78E-126	371

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480019348.01.T01	A0A072UIE4	94.551	312	17	0	121	432	10	321	0.0	613

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048134.01	MsG0480019348.01	0.823511	1.331799e-53	1.149099e-50
MsG0180000352.01	MsG0480019348.01	-0.804681	1.922278e-49	9.973800e-47
MsG0180000897.01	MsG0480019348.01	0.815432	9.273868e-52	6.392890e-49
MsG0180000899.01	MsG0480019348.01	0.804588	2.009672e-49	1.040212e-46
MsG0180001029.01	MsG0480019348.01	0.844627	6.722581e-59	1.091828e-55
MsG0180001054.01	MsG0480019348.01	-0.806616	7.542769e-50	4.112566e-47
MsG0180001084.01	MsG0480019348.01	0.807279	5.463854e-50	3.030762e-47
MsG0180001513.01	MsG0480019348.01	0.839297	1.723619e-57	2.369957e-54
MsG0180001515.01	MsG0480019348.01	0.825461	4.628421e-54	4.221255e-51
MsG0180001797.01	MsG0480019348.01	0.830959	2.189534e-55	2.342436e-52

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480019348.01.T01	MTR_4g029170	94.551	312	17	0	121	432	10	321	0.0	613
MsG0480019348.01.T01	MTR_4g029180	88.699	292	33	0	141	432	30	321	0.0	548
MsG0480019348.01.T01	MTR_5g074710	60.828	314	117	4	123	432	10	321	6.95e-132	383
MsG0480019348.01.T01	MTR_5g074740	61.059	321	118	5	117	432	3	321	1.20e-131	382
MsG0480019348.01.T01	MTR_5g074860	58.589	326	120	6	113	431	7	324	1.98e-130	379
MsG0480019348.01.T01	MTR_5g074970	61.587	315	117	2	121	432	13	326	3.17e-130	379
MsG0480019348.01.T01	MTR_5g074760	59.873	314	120	4	123	432	10	321	3.48e-130	378
MsG0480019348.01.T01	MTR_3g466200	58.786	313	125	3	123	432	9	320	3.40e-123	360
MsG0480019348.01.T01	MTR_3g072190	58.413	315	126	3	121	432	6	318	1.16e-121	357
MsG0480019348.01.T01	MTR_3g467600	57.778	315	127	4	123	432	11	324	5.60e-120	352

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480019348.01.T01	AT5G05340	62.290	297	108	3	138	432	30	324	3.85e-127	371
MsG0480019348.01.T01	AT1G14550	53.774	318	143	4	118	432	5	321	9.47e-111	329
MsG0480019348.01.T01	AT5G58400	52.866	314	145	2	121	432	13	325	4.30e-110	327
MsG0480019348.01.T01	AT5G58390	55.449	312	136	2	123	432	6	316	3.96e-109	325
MsG0480019348.01.T01	AT4G36430	53.465	303	131	4	138	432	30	330	4.56e-109	325
MsG0480019348.01.T01	AT2G18150	53.135	303	132	4	138	432	36	336	5.50e-108	322
MsG0480019348.01.T01	AT1G14540	52.229	314	146	4	121	432	4	315	4.51e-106	317
MsG0480019348.01.T01	AT2G18140	53.135	303	132	4	138	432	35	335	1.68e-105	316
MsG0480019348.01.T01	AT5G06720	47.289	332	157	5	117	432	4	333	5.48e-102	307
MsG0480019348.01.T01	AT3G50990	50.000	310	145	4	131	432	34	341	1.60e-101	306

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Find 81 sgRNAs with CRISPR-Local

Find 231 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAAAGGGCTTCTTCATT+CGG	0.378097	4:+18800426	MsG0480019348.01.T01:CDS
AAAGAAGCTTTCCATGTTCG+AGG	0.482481	4:+18796638	MsG0480019348.01.T01:CDS
AAAGACCTCGTTGCCCTATC+TGG	0.286567	4:+18800211	MsG0480019348.01.T01:CDS
AAAGACTGAATGATGGTCCG+GGG	0.721286	4:-18800147	None:intergenic
AAGACACTTACTGGGAGTCA+AGG	0.621054	4:+18800562	MsG0480019348.01.T01:CDS
AATAGTGTGTGCTCCAGATA+GGG	0.548473	4:-18800224	None:intergenic
AATATCTTGATGATCTTAAT+TGG	0.198524	4:-18800611	None:intergenic
ACAGTCTAGAGCTGCAAGGT+TGG	0.528477	4:-18800356	None:intergenic
AGAAAGACTGAATGATGGTC+CGG	0.452732	4:-18800149	None:intergenic
AGATTGCCAAGACCTACATC+AGG	0.591448	4:+18796771	MsG0480019348.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAACACTCATCCAAAACAA+AGG	-	Chr4:18797945-18797964	None:intergenic	30.0%
AAAATTGGAGAAAAATGCCA+AGG	+	Chr4:18796986-18797005	MsG0480019348.01.T01:intron	30.0%
AAACTAAGAATGAGTATGCT+AGG	+	Chr4:18798326-18798345	MsG0480019348.01.T01:intron	30.0%
AAGGAAGGTTTCAATTAGTA+AGG	+	Chr4:18796887-18796906	MsG0480019348.01.T01:intron	30.0%
AGATAGATTTGATCGAACTT+TGG	+	Chr4:18798039-18798058	MsG0480019348.01.T01:intron	30.0%
AGGACAATACTTATATTGCA+CGG	-	Chr4:18798069-18798088	None:intergenic	30.0%
AGTGAGTAATCAGATTGAAT+TGG	+	Chr4:18797706-18797725	MsG0480019348.01.T01:intron	30.0%
ATCAAAAATTTCGACAACCA+AGG	+	Chr4:18800178-18800197	MsG0480019348.01.T01:CDS	30.0%
ATTAGCAAGTTACACAACTT+TGG	-	Chr4:18799598-18799617	None:intergenic	30.0%
ATTTGATGTGTCATATTACC+AGG	+	Chr4:18800393-18800412	MsG0480019348.01.T01:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	18796569	18800618	18796569	ID=MsG0480019348.01;Name=MsG0480019348.01
Chr4	mRNA	18796569	18800618	18796569	ID=MsG0480019348.01.T01;Parent=MsG0480019348.01;Name=MsG0480019348.01.T01;_AED=0.27;_eAED=0.27;_QI=0\|0\|0\|0.8\|1\|1\|5\|0\|432
Chr4	exon	18796569	18796903	18796569	ID=MsG0480019348.01.T01:exon:6319;Parent=MsG0480019348.01.T01
Chr4	exon	18797781	18797814	18797781	ID=MsG0480019348.01.T01:exon:6320;Parent=MsG0480019348.01.T01
Chr4	exon	18798903	18799082	18798903	ID=MsG0480019348.01.T01:exon:6321;Parent=MsG0480019348.01.T01
Chr4	exon	18799207	18799401	18799207	ID=MsG0480019348.01.T01:exon:6322;Parent=MsG0480019348.01.T01
Chr4	exon	18800064	18800618	18800064	ID=MsG0480019348.01.T01:exon:6323;Parent=MsG0480019348.01.T01
Chr4	CDS	18796569	18796903	18796569	ID=MsG0480019348.01.T01:cds;Parent=MsG0480019348.01.T01
Chr4	CDS	18797781	18797814	18797781	ID=MsG0480019348.01.T01:cds;Parent=MsG0480019348.01.T01
Chr4	CDS	18798903	18799082	18798903	ID=MsG0480019348.01.T01:cds;Parent=MsG0480019348.01.T01
Chr4	CDS	18799207	18799401	18799207	ID=MsG0480019348.01.T01:cds;Parent=MsG0480019348.01.T01
Chr4	CDS	18800064	18800618	18800064	ID=MsG0480019348.01.T01:cds;Parent=MsG0480019348.01.T01

Gene Sequence

>MsG0480019348.01.T01

ATGGCGTGCCTCGAAGCTATCATGCAAGGGAAGAATGAGCCTCTCCGAGATTACATCGAGAGGTTCGACAAAGAAGCTTTCCATGTTCGAGGTGCTGATGAATCCATGAAAAAGTATCTCATTGTGAACGTTCTGCACCCTGGAACAGACATGAAAAAAGTCGTCCATCTTGATCTCCCAAGGACTCTAAATGTGTTCCTAGAGATTGCCAAGACCTACATCAGGTACGAGGAGGAACTGTATGTGGACATCCTGAACAAATCCAGGAAGGAAGAGCCTGCTGCTGAATCTTCCAAAAAGCTCTTCCACGAGAAAAAGAAGGAAGGTTTCAATTATTGCGAGATTTGGAGCAATTTGCCATTTGACTTAGCAATAGTGTTGGCAGCTCTTGCAACAACAACATTTTCAGCACTCACAACAAATTACTATGATTACACATGCCCTAATGCTCTGAGCACTATTAGAAATGTTGTTGAAGCTGCAGTTCAAAGAGAGAACCGTATGGGTGGCTCTTTACTACGCTTGCATTTTCATGATTGCTTTGTTAACGGTTGTGATGGTTCACTTCTTCTAGACTCTACACCTTCCATGGACAGTGAAAAAAATGCAAATCCAAATATCAATTCAGCTAGAGGATTTGAAGTGATTGATGAGATTAAGGAAGCTGTTGATAAAGCATGTGGAAAACCAGTTGTTTCTTGTGCAGACATATTGGCTGTAGCTGCAAGAGACTCCGTCGTTGCGTTAGGAGGACCATCATGGAAAGTGCAGCTAGGAAGAAGAGACTCAAAGACAGCAAGTCGTGCCGATGCAGATTCAGGCAACATCCCCGGACCATCATTCAGTCTTTCTCAACTCATCAAAAATTTCGACAACCAAGGCCTAAACGAAAAAGACCTCGTTGCCCTATCTGGAGCACACACTATTGGATTTTCGCGCTGTCTTTTATTTAGAGACCGAATCTACAATGACAAGAACATCGATGCAAACTTCGCAAAACAGCTTCAAGACATTTGTCCCAGAGAAGGAGGAGACTCCAACCTTGCAGCTCTAGACTGTGTTACACCGGCAAAATTTGATGTGTCATATTACCAGGAACTGATTAAAAAGAAAGGGCTTCTTCATTCGGATCAGGAATTATTAAATGGTGATTATACTGGATCGTTGGTTAGAAAATATAGGCGCGATACAAGTTCTTTCTACAACGACTTTGCGAAATCTATGATTAAGATGGGAAATATTAAGACACTTACTGGGAGTCAAGGTGAAATTCGTTCAAATTGCAGGAGAGCCAATTAA

Protein sequence

>MsG0480019348.01.T01

MACLEAIMQGKNEPLRDYIERFDKEAFHVRGADESMKKYLIVNVLHPGTDMKKVVHLDLPRTLNVFLEIAKTYIRYEEELYVDILNKSRKEEPAAESSKKLFHEKKKEGFNYCEIWSNLPFDLAIVLAALATTTFSALTTNYYDYTCPNALSTIRNVVEAAVQRENRMGGSLLRLHFHDCFVNGCDGSLLLDSTPSMDSEKNANPNINSARGFEVIDEIKEAVDKACGKPVVSCADILAVAARDSVVALGGPSWKVQLGRRDSKTASRADADSGNIPGPSFSLSQLIKNFDNQGLNEKDLVALSGAHTIGFSRCLLFRDRIYNDKNIDANFAKQLQDICPREGGDSNLAALDCVTPAKFDVSYYQELIKKKGLLHSDQELLNGDYTGSLVRKYRRDTSSFYNDFAKSMIKMGNIKTLTGSQGEIRSNCRRAN*