Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0280011292.01.T01 | XP_003597730.1 | 96.491 | 171 | 5 | 1 | 1 | 170 | 1 | 171 | 6.81E-120 | 345 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0280011292.01.T01 | Q9M815 | 63.576 | 151 | 52 | 2 | 21 | 170 | 42 | 190 | 5.10E-71 | 215 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0280011292.01.T01 | Q2HU50 | 96.491 | 171 | 5 | 1 | 1 | 170 | 1 | 171 | 3.25e-120 | 345 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsG0180001029.01 | MsG0280011292.01 | 0.862423 | 5.121160e-64 | 1.499130e-60 |
MsG0180001800.01 | MsG0280011292.01 | 0.800039 | 1.737809e-48 | 8.010060e-46 |
MsG0180003237.01 | MsG0280011292.01 | 0.831771 | 1.381722e-55 | 1.514549e-52 |
MsG0180003320.01 | MsG0280011292.01 | 0.806186 | 9.295515e-50 | 5.013246e-47 |
MsG0180003452.01 | MsG0280011292.01 | 0.816501 | 5.351899e-52 | 3.798644e-49 |
MsG0180006195.01 | MsG0280011292.01 | 0.830969 | 2.177142e-55 | 2.329959e-52 |
MsG0280011292.01 | MsG0380015659.01 | 0.815223 | 1.032110e-51 | 7.073558e-49 |
MsG0280011292.01 | MsG0380016299.01 | 0.825895 | 3.651647e-54 | 3.372275e-51 |
MsG0280011292.01 | MsG0380016300.01 | 0.812617 | 3.873549e-51 | 2.474567e-48 |
MsG0280011292.01 | MsG0380017173.01 | 0.806686 | 7.292950e-50 | 3.983420e-47 |
MsG0280011292.01 | MsG0480019146.01 | 0.820096 | 8.216945e-53 | 6.441126e-50 |
MsG0280011292.01 | MsG0480019301.01 | 0.816378 | 5.702588e-52 | 4.034203e-49 |
MsG0280011292.01 | MsG0480019348.01 | 0.841282 | 5.223359e-58 | 7.637146e-55 |
MsG0280011292.01 | MsG0480020595.01 | 0.812306 | 4.529856e-51 | 2.870010e-48 |
MsG0280011292.01 | MsG0480020754.01 | 0.800405 | 1.463610e-48 | 6.809435e-46 |
MsG0280011292.01 | MsG0480020904.01 | 0.804316 | 2.290408e-49 | 1.177220e-46 |
MsG0280011292.01 | MsG0480023459.01 | 0.803255 | 3.803711e-49 | 1.902470e-46 |
MsG0280011292.01 | MsG0580024087.01 | 0.807768 | 4.301367e-50 | 2.416417e-47 |
MsG0280011292.01 | MsG0580024412.01 | 0.802985 | 4.325576e-49 | 2.148527e-46 |
MsG0280011292.01 | MsG0580026018.01 | 0.814778 | 1.295760e-51 | 8.774239e-49 |
MsG0280011292.01 | MsG0580026521.01 | 0.810950 | 8.931813e-51 | 5.458673e-48 |
MsG0280011292.01 | MsG0580027751.01 | 0.833583 | 4.905734e-56 | 5.674107e-53 |
MsG0280011292.01 | MsG0580029676.01 | 0.805493 | 1.300212e-49 | 6.888431e-47 |
MsG0280011292.01 | MsG0580029937.01 | 0.811646 | 6.309871e-51 | 3.927040e-48 |
MsG0280011292.01 | MsG0680030379.01 | 0.800586 | 1.344228e-48 | 6.282747e-46 |
MsG0280011292.01 | MsG0680031200.01 | 0.837279 | 5.709736e-57 | 7.380012e-54 |
MsG0280011292.01 | MsG0680032932.01 | 0.828398 | 9.193335e-55 | 9.127540e-52 |
MsG0280011292.01 | MsG0680034238.01 | 0.810422 | 1.162031e-50 | 7.001261e-48 |
MsG0280011292.01 | MsG0780036649.01 | 0.826670 | 2.388192e-54 | 2.254595e-51 |
MsG0280011292.01 | MsG0780036839.01 | 0.820107 | 8.167612e-53 | 6.404685e-50 |
MsG0280011292.01 | MsG0780039373.01 | 0.821302 | 4.340706e-53 | 3.518026e-50 |
MsG0280011292.01 | MsG0780040498.01 | 0.801337 | 9.442489e-49 | 4.497976e-46 |
MsG0280011292.01 | MsG0780040716.01 | 0.807243 | 5.559266e-50 | 3.080854e-47 |
MsG0280011292.01 | MsG0780041246.01 | 0.811321 | 7.424218e-51 | 4.581185e-48 |
MsG0280011292.01 | MsG0780041248.01 | 0.818177 | 2.245585e-52 | 1.668854e-49 |
MsG0280011292.01 | MsG0780041500.01 | 0.804013 | 2.647711e-49 | 1.350398e-46 |
MsG0280011292.01 | MsG0880043997.01 | 0.821451 | 4.010065e-53 | 3.263509e-50 |
MsG0280011292.01 | MsG0880044026.01 | 0.809855 | 1.539701e-50 | 9.140376e-48 |
MsG0280011292.01 | MsG0880044712.01 | 0.813849 | 2.078582e-51 | 1.372582e-48 |
MsG0280011292.01 | MsG0880045801.01 | 0.837022 | 6.641341e-57 | 8.518113e-54 |
MsG0280011292.01 | MsG0880046870.01 | 0.836452 | 9.279572e-57 | 1.169986e-53 |
MsG0280011292.01 | MsG0880047383.01 | 0.808143 | 3.580105e-50 | 2.031235e-47 |
MsG0280007869.01 | MsG0280011292.01 | 0.811635 | 6.344079e-51 | 3.947224e-48 |
PPI
Gene1 | Gene2 | Type |
---|---|---|
MsG0580028657.01 | MsG0280011292.01 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0280011292.01.T01 | MTR_2g101660 | 96.491 | 171 | 5 | 1 | 1 | 170 | 1 | 171 | 8.25e-124 | 345 |
MsG0280011292.01.T01 | MTR_2g101660 | 98.374 | 123 | 2 | 0 | 48 | 170 | 1 | 123 | 9.91e-90 | 258 |
MsG0280011292.01.T01 | MTR_4g086330 | 40.458 | 131 | 78 | 0 | 32 | 162 | 64 | 194 | 1.33e-29 | 107 |
MsG0280011292.01.T01 | MTR_8g104890 | 34.320 | 169 | 108 | 1 | 2 | 170 | 4 | 169 | 1.21e-27 | 102 |
MsG0280011292.01.T01 | MTR_4g086320 | 42.149 | 121 | 66 | 1 | 25 | 141 | 40 | 160 | 1.45e-26 | 99.0 |
MsG0280011292.01.T01 | MTR_8g104870 | 38.938 | 113 | 69 | 0 | 32 | 144 | 52 | 164 | 4.71e-26 | 98.6 |
MsG0280011292.01.T01 | MTR_1g075550 | 46.903 | 113 | 59 | 1 | 32 | 144 | 12 | 123 | 1.13e-25 | 95.9 |
MsG0280011292.01.T01 | MTR_5g017650 | 37.931 | 116 | 69 | 1 | 32 | 144 | 52 | 167 | 1.60e-24 | 94.7 |
MsG0280011292.01.T01 | MTR_6g084940 | 37.795 | 127 | 74 | 2 | 20 | 142 | 2 | 127 | 1.67e-22 | 88.2 |
MsG0280011292.01.T01 | MTR_8g104830 | 35.172 | 145 | 82 | 4 | 25 | 161 | 2 | 142 | 2.21e-21 | 85.1 |
MsG0280011292.01.T01 | MTR_5g008240 | 28.889 | 135 | 77 | 2 | 20 | 137 | 29 | 161 | 4.17e-14 | 67.0 |
MsG0280011292.01.T01 | MTR_5g008240 | 30.233 | 129 | 71 | 2 | 26 | 137 | 101 | 227 | 1.36e-13 | 67.0 |
MsG0280011292.01.T01 | MTR_5g008240 | 28.889 | 135 | 77 | 2 | 20 | 137 | 71 | 203 | 1.81e-13 | 66.2 |
MsG0280011292.01.T01 | MTR_5g022670 | 30.714 | 140 | 74 | 3 | 32 | 168 | 295 | 414 | 5.22e-12 | 63.2 |
MsG0280011292.01.T01 | MTR_2g011490 | 28.571 | 140 | 68 | 6 | 32 | 144 | 76 | 210 | 1.49e-11 | 61.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0280011292.01.T01 | AT1G52200 | 63.576 | 151 | 52 | 2 | 21 | 170 | 42 | 190 | 5.20e-72 | 215 |
MsG0280011292.01.T01 | AT1G52200 | 65.891 | 129 | 44 | 0 | 21 | 149 | 42 | 170 | 3.55e-65 | 198 |
MsG0280011292.01.T01 | AT1G49030 | 44.898 | 147 | 79 | 1 | 22 | 168 | 78 | 222 | 1.06e-36 | 126 |
MsG0280011292.01.T01 | AT3G18470 | 47.788 | 113 | 59 | 0 | 32 | 144 | 5 | 117 | 1.45e-36 | 123 |
MsG0280011292.01.T01 | AT3G18460 | 41.606 | 137 | 72 | 2 | 32 | 168 | 54 | 182 | 1.18e-34 | 120 |
MsG0280011292.01.T01 | AT3G18450 | 40.876 | 137 | 75 | 3 | 32 | 168 | 52 | 182 | 1.94e-31 | 112 |
MsG0280011292.01.T01 | AT1G58320 | 51.327 | 113 | 53 | 2 | 32 | 143 | 17 | 128 | 4.10e-31 | 110 |
MsG0280011292.01.T01 | AT1G68630 | 41.441 | 111 | 64 | 1 | 32 | 142 | 29 | 138 | 1.57e-27 | 101 |
MsG0280011292.01.T01 | AT5G35525 | 34.028 | 144 | 93 | 1 | 27 | 170 | 11 | 152 | 1.96e-27 | 100 |
MsG0280011292.01.T01 | AT1G14870 | 38.095 | 126 | 78 | 0 | 27 | 152 | 11 | 136 | 2.95e-27 | 100 |
MsG0280011292.01.T01 | AT1G14880 | 37.288 | 118 | 74 | 0 | 27 | 144 | 10 | 127 | 1.93e-24 | 93.2 |
MsG0280011292.01.T01 | AT1G14870 | 39.130 | 115 | 70 | 0 | 27 | 141 | 11 | 125 | 2.25e-24 | 92.8 |
MsG0280011292.01.T01 | AT1G68610 | 37.324 | 142 | 84 | 3 | 32 | 170 | 19 | 158 | 1.14e-20 | 83.6 |
MsG0280011292.01.T01 | AT2G40935 | 32.479 | 117 | 62 | 2 | 32 | 132 | 47 | 162 | 1.08e-15 | 71.6 |
MsG0280011292.01.T01 | AT2G40935 | 32.479 | 117 | 62 | 2 | 32 | 132 | 47 | 162 | 1.08e-15 | 71.6 |
MsG0280011292.01.T01 | AT2G40935 | 32.479 | 117 | 62 | 2 | 32 | 132 | 47 | 162 | 1.08e-15 | 71.6 |
MsG0280011292.01.T01 | AT2G40935 | 32.479 | 117 | 62 | 2 | 32 | 132 | 47 | 162 | 1.08e-15 | 71.6 |
MsG0280011292.01.T01 | AT2G40935 | 32.479 | 117 | 62 | 2 | 32 | 132 | 47 | 162 | 1.08e-15 | 71.6 |
MsG0280011292.01.T01 | AT2G40935 | 34.694 | 98 | 47 | 2 | 51 | 132 | 55 | 151 | 4.33e-12 | 61.6 |
MsG0280011292.01.T01 | AT2G40935 | 34.694 | 98 | 47 | 2 | 51 | 132 | 42 | 138 | 1.06e-11 | 60.5 |
MsG0280011292.01.T01 | AT2G40935 | 34.694 | 98 | 47 | 2 | 51 | 132 | 42 | 138 | 1.06e-11 | 60.5 |
MsG0280011292.01.T01 | AT2G40935 | 34.694 | 98 | 47 | 2 | 51 | 132 | 42 | 138 | 1.06e-11 | 60.5 |
MsG0280011292.01.T01 | AT4G35920 | 30.667 | 150 | 80 | 5 | 22 | 168 | 291 | 419 | 3.78e-11 | 60.8 |
MsG0280011292.01.T01 | AT4G35920 | 30.667 | 150 | 80 | 5 | 22 | 168 | 291 | 419 | 3.78e-11 | 60.8 |
MsG0280011292.01.T01 | AT4G35920 | 30.667 | 150 | 80 | 5 | 22 | 168 | 291 | 419 | 3.78e-11 | 60.8 |
MsG0280011292.01.T01 | AT4G35920 | 30.667 | 150 | 80 | 5 | 22 | 168 | 291 | 419 | 3.78e-11 | 60.8 |
MsG0280011292.01.T01 | AT4G35920 | 30.667 | 150 | 80 | 5 | 22 | 168 | 291 | 419 | 3.78e-11 | 60.8 |
Find 39 sgRNAs with CRISPR-Local
Find 66 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGAAGATATTACCATTTGTT+TGG | 0.364288 | 2:+82053786 | None:intergenic |
GTTAAGGAAGAAGTATGATT+TGG | 0.371388 | 2:-82053017 | MsG0280011292.01.T01:CDS |
TTCAGAGAGCTCAAAATTAG+AGG | 0.383494 | 2:-82052929 | MsG0280011292.01.T01:CDS |
TTTGTGCACACAATGGATTA+TGG | 0.383643 | 2:-82053059 | MsG0280011292.01.T01:CDS |
TTGTGCACACAATGGATTAT+GGG | 0.412784 | 2:-82053058 | MsG0280011292.01.T01:CDS |
ATAATGTAAGGTTGCCATCT+TGG | 0.416334 | 2:-82053112 | MsG0280011292.01.T01:intron |
TCATACCTTGAGCCAACAAC+AGG | 0.458603 | 2:+82053872 | None:intergenic |
GAGGGAGGATTGTTCAATGT+TGG | 0.461435 | 2:+82052747 | None:intergenic |
AGAGGACTTGACCCTGCTCT+TGG | 0.473756 | 2:-82052911 | MsG0280011292.01.T01:intron |
CAAAGTATAGAACAAAGTTA+AGG | 0.474519 | 2:-82053033 | MsG0280011292.01.T01:CDS |
TGGACAGATAGCAGAAGTAT+TGG | 0.475164 | 2:-82053227 | MsG0280011292.01.T01:CDS |
CAACAGCAGGAACCTGTTGT+TGG | 0.477266 | 2:-82053884 | MsG0280011292.01.T01:CDS |
GTGAATTAAATACCAAGAGC+AGG | 0.481342 | 2:+82052899 | None:intergenic |
CTAATACAATTCAGCATGTA+GGG | 0.489705 | 2:-82053847 | MsG0280011292.01.T01:CDS |
TTAGACATGAATTGAGTTGA+GGG | 0.500404 | 2:+82052729 | None:intergenic |
GTAGGGAGTCCATGGAGTAC+TGG | 0.501789 | 2:-82053830 | MsG0280011292.01.T01:CDS |
AAGGAAGAAGTATGATTTGG+TGG | 0.502714 | 2:-82053014 | MsG0280011292.01.T01:CDS |
GCTAATACAATTCAGCATGT+AGG | 0.503756 | 2:-82053848 | MsG0280011292.01.T01:CDS |
ATCCATTGTGTGCACAAAGC+AGG | 0.505668 | 2:+82053064 | None:intergenic |
CTCTCTGAACTCTTGACATA+GGG | 0.516209 | 2:+82052943 | None:intergenic |
ACAAAGCAGGCATCATTAGC+AGG | 0.519823 | 2:+82053077 | None:intergenic |
TTCAGCATGTAGGGAGTCCA+TGG | 0.521718 | 2:-82053838 | MsG0280011292.01.T01:CDS |
TGTCATGAGAACCAAACAAA+TGG | 0.529201 | 2:-82053797 | MsG0280011292.01.T01:intron |
GCTCTCTGAACTCTTGACAT+AGG | 0.530518 | 2:+82052942 | None:intergenic |
CTTAGACATGAATTGAGTTG+AGG | 0.545566 | 2:+82052728 | None:intergenic |
AGGAACCTGTTGTTGGCTCA+AGG | 0.566558 | 2:-82053877 | MsG0280011292.01.T01:CDS |
TCAAATAATCCAGTACTCCA+TGG | 0.579513 | 2:+82053821 | None:intergenic |
GGTAAATGAAGCTTCCAAGA+TGG | 0.581380 | 2:+82053098 | None:intergenic |
GACATGAATTGAGTTGAGGG+AGG | 0.606886 | 2:+82052732 | None:intergenic |
GGAGCAGAAGACTCAACAGC+AGG | 0.615251 | 2:-82053897 | MsG0280011292.01.T01:CDS |
CAGATAGCAGAAGTATTGGA+TGG | 0.622869 | 2:-82053223 | MsG0280011292.01.T01:CDS |
TTGAGTCTTCTGCTCCTCAG+TGG | 0.624600 | 2:+82053904 | None:intergenic |
TGAATTAAATACCAAGAGCA+GGG | 0.629149 | 2:+82052900 | None:intergenic |
ATCTGTCCAAATGTTACACA+AGG | 0.643300 | 2:+82053241 | None:intergenic |
TGCCTGCTTTGTGCACACAA+TGG | 0.656127 | 2:-82053066 | MsG0280011292.01.T01:CDS |
TGAGAAATCACATCTGAATG+TGG | 0.657682 | 2:+82052986 | None:intergenic |
ATAGCAGAAGTATTGGATGG+TGG | 0.672429 | 2:-82053220 | MsG0280011292.01.T01:CDS |
AAGGGAGATGCAGACCACTG+AGG | 0.731299 | 2:-82053918 | None:intergenic |
TCTTGACATAGGGAACAACA+AGG | 0.757057 | 2:+82052953 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATATATATACCTTTTTTATA+TGG | - | Chr2:82053345-82053364 | MsG0280011292.01.T01:intron | 10.0% |
!!! | ATTTTATTTAATCAAATACA+TGG | + | Chr2:82053476-82053495 | None:intergenic | 10.0% |
!! | TTGTTAATTGTAATAATGTA+AGG | - | Chr2:82053512-82053531 | MsG0280011292.01.T01:intron | 15.0% |
!! | TTTATTCATCAAATATAAAG+TGG | + | Chr2:82053765-82053784 | None:intergenic | 15.0% |
!!! | TCATTTTCTCAAATTATTAT+CGG | - | Chr2:82053127-82053146 | MsG0280011292.01.T01:intron | 15.0% |
!! | ACAATGAAATAAAAATGTGT+TGG | + | Chr2:82053288-82053307 | None:intergenic | 20.0% |
!! | AGAAAAAACTTGATGAAATT+TGG | - | Chr2:82052959-82052978 | MsG0280011292.01.T01:CDS | 20.0% |
! | AAACAAACTAAGTAGTTCAA+TGG | + | Chr2:82052887-82052906 | None:intergenic | 25.0% |
! | AACAATTCATAGTTCATAGT+AGG | + | Chr2:82053227-82053246 | None:intergenic | 25.0% |
! | AATCAAATACATGGTGATTT+GGG | + | Chr2:82053467-82053486 | None:intergenic | 25.0% |
! | ACAATTCATAGTTCATAGTA+GGG | + | Chr2:82053226-82053245 | None:intergenic | 25.0% |
! | AGAAGATATTACCATTTGTT+TGG | + | Chr2:82052853-82052872 | None:intergenic | 25.0% |
! | ATTACTTAAGAACTTCAACA+AGG | + | Chr2:82052995-82053014 | None:intergenic | 25.0% |
! | ATTCATCAAATATAAAGTGG+AGG | + | Chr2:82053762-82053781 | None:intergenic | 25.0% |
! | CAAAGTATAGAACAAAGTTA+AGG | - | Chr2:82053603-82053622 | MsG0280011292.01.T01:intron | 25.0% |
! | TAATCAAATACATGGTGATT+TGG | + | Chr2:82053468-82053487 | None:intergenic | 25.0% |
! | TTGTTAAACTTGTAATATGC+AGG | - | Chr2:82053304-82053323 | MsG0280011292.01.T01:intron | 25.0% |
!!! | ATAACAAATTTTTGAGTGCA+GGG | - | Chr2:82053821-82053840 | MsG0280011292.01.T01:CDS | 25.0% |
!!! | TATAACAAATTTTTGAGTGC+AGG | - | Chr2:82053820-82053839 | MsG0280011292.01.T01:CDS | 25.0% |
AGCTGCAAACCATATAAAAA+AGG | + | Chr2:82053357-82053376 | None:intergenic | 30.0% | |
CTAATACAATTCAGCATGTA+GGG | - | Chr2:82052789-82052808 | MsG0280011292.01.T01:CDS | 30.0% | |
TGAATTAAATACCAAGAGCA+GGG | + | Chr2:82053739-82053758 | None:intergenic | 30.0% | |
TTAAGTAATTCTTGAGCACA+TGG | - | Chr2:82053006-82053025 | MsG0280011292.01.T01:CDS | 30.0% | |
! | ACACTTTCAATTTGAAGTGT+CGG | + | Chr2:82053054-82053073 | None:intergenic | 30.0% |
! | GTTAAGGAAGAAGTATGATT+TGG | - | Chr2:82053619-82053638 | MsG0280011292.01.T01:intron | 30.0% |
! | TTTTTGCCTTGTGTAACATT+TGG | - | Chr2:82053389-82053408 | MsG0280011292.01.T01:intron | 30.0% |
!! | TTAGACATGAATTGAGTTGA+GGG | + | Chr2:82053910-82053929 | None:intergenic | 30.0% |
ATAATGTAAGGTTGCCATCT+TGG | - | Chr2:82053524-82053543 | MsG0280011292.01.T01:intron | 35.0% | |
ATCTGTCCAAATGTTACACA+AGG | + | Chr2:82053398-82053417 | None:intergenic | 35.0% | |
GCTAATACAATTCAGCATGT+AGG | - | Chr2:82052788-82052807 | MsG0280011292.01.T01:CDS | 35.0% | |
GTGAATTAAATACCAAGAGC+AGG | + | Chr2:82053740-82053759 | None:intergenic | 35.0% | |
TCAAATAATCCAGTACTCCA+TGG | + | Chr2:82052818-82052837 | None:intergenic | 35.0% | |
TGAGAAATCACATCTGAATG+TGG | + | Chr2:82053653-82053672 | None:intergenic | 35.0% | |
TGTCATGAGAACCAAACAAA+TGG | - | Chr2:82052839-82052858 | MsG0280011292.01.T01:intron | 35.0% | |
TGTTCATGTCATGTCTGTAT+TGG | - | Chr2:82053167-82053186 | MsG0280011292.01.T01:intron | 35.0% | |
TTCAGAGAGCTCAAAATTAG+AGG | - | Chr2:82053707-82053726 | MsG0280011292.01.T01:intron | 35.0% | |
! | AAGGAAGAAGTATGATTTGG+TGG | - | Chr2:82053622-82053641 | MsG0280011292.01.T01:intron | 35.0% |
! | CTTAGACATGAATTGAGTTG+AGG | + | Chr2:82053911-82053930 | None:intergenic | 35.0% |
! | GGTGCTACATATATTTGTGA+CGG | + | Chr2:82053033-82053052 | None:intergenic | 35.0% |
!! | TTGTGCACACAATGGATTAT+GGG | - | Chr2:82053578-82053597 | MsG0280011292.01.T01:intron | 35.0% |
!! | TTTGTGCACACAATGGATTA+TGG | - | Chr2:82053577-82053596 | MsG0280011292.01.T01:intron | 35.0% |
CTCTCTGAACTCTTGACATA+GGG | + | Chr2:82053696-82053715 | None:intergenic | 40.0% | |
GGTAAATGAAGCTTCCAAGA+TGG | + | Chr2:82053541-82053560 | None:intergenic | 40.0% | |
TCTTGACATAGGGAACAACA+AGG | + | Chr2:82053686-82053705 | None:intergenic | 40.0% | |
! | TGGACAGATAGCAGAAGTAT+TGG | - | Chr2:82053409-82053428 | MsG0280011292.01.T01:intron | 40.0% |
!! | ATAGCAGAAGTATTGGATGG+TGG | - | Chr2:82053416-82053435 | MsG0280011292.01.T01:intron | 40.0% |
!! | CAGATAGCAGAAGTATTGGA+TGG | - | Chr2:82053413-82053432 | MsG0280011292.01.T01:intron | 40.0% |
!!! | ACAAATTTTTGAGTGCAGGG+TGG | - | Chr2:82053824-82053843 | MsG0280011292.01.T01:CDS | 40.0% |
ACAAAGCAGGCATCATTAGC+AGG | + | Chr2:82053562-82053581 | None:intergenic | 45.0% | |
ATCCATTGTGTGCACAAAGC+AGG | + | Chr2:82053575-82053594 | None:intergenic | 45.0% | |
GAGGGAGGATTGTTCAATGT+TGG | + | Chr2:82053892-82053911 | None:intergenic | 45.0% | |
GCTCTCTGAACTCTTGACAT+AGG | + | Chr2:82053697-82053716 | None:intergenic | 45.0% | |
TCATACCTTGAGCCAACAAC+AGG | + | Chr2:82052767-82052786 | None:intergenic | 45.0% | |
! | GGTGATTTGGGAGTTAGAGA+GGG | + | Chr2:82053455-82053474 | None:intergenic | 45.0% |
! | TGGTGATTTGGGAGTTAGAG+AGG | + | Chr2:82053456-82053475 | None:intergenic | 45.0% |
!! | GACATGAATTGAGTTGAGGG+AGG | + | Chr2:82053907-82053926 | None:intergenic | 45.0% |
!!! | TTTTTGAGTGCAGGGTGGAA+TGG | - | Chr2:82053829-82053848 | MsG0280011292.01.T01:CDS | 45.0% |
CAACAGCAGGAACCTGTTGT+TGG | - | Chr2:82052752-82052771 | MsG0280011292.01.T01:CDS | 50.0% | |
TGCCTGCTTTGTGCACACAA+TGG | - | Chr2:82053570-82053589 | MsG0280011292.01.T01:intron | 50.0% | |
TGTCAGACACAGATGACGTG+TGG | + | Chr2:82053079-82053098 | None:intergenic | 50.0% | |
TTCAGCATGTAGGGAGTCCA+TGG | - | Chr2:82052798-82052817 | MsG0280011292.01.T01:intron | 50.0% | |
TTGAGTCTTCTGCTCCTCAG+TGG | + | Chr2:82052735-82052754 | None:intergenic | 50.0% | |
!! | AGGAACCTGTTGTTGGCTCA+AGG | - | Chr2:82052759-82052778 | MsG0280011292.01.T01:CDS | 50.0% |
AGAGGACTTGACCCTGCTCT+TGG | - | Chr2:82053725-82053744 | MsG0280011292.01.T01:intron | 55.0% | |
GGAGCAGAAGACTCAACAGC+AGG | - | Chr2:82052739-82052758 | MsG0280011292.01.T01:CDS | 55.0% | |
GTAGGGAGTCCATGGAGTAC+TGG | - | Chr2:82052806-82052825 | MsG0280011292.01.T01:intron | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr2 | gene | 82052725 | 82053933 | 82052725 | ID=MsG0280011292.01;Name=MsG0280011292.01 |
Chr2 | mRNA | 82052725 | 82053933 | 82052725 | ID=MsG0280011292.01.T01;Parent=MsG0280011292.01;Name=MsG0280011292.01.T01;_AED=0.17;_eAED=0.18;_QI=0|0|0|1|1|1|4|0|170 |
Chr2 | exon | 82053798 | 82053933 | 82053798 | ID=MsG0280011292.01.T01:exon:12188;Parent=MsG0280011292.01.T01 |
Chr2 | exon | 82053212 | 82053283 | 82053212 | ID=MsG0280011292.01.T01:exon:12187;Parent=MsG0280011292.01.T01 |
Chr2 | exon | 82052912 | 82053124 | 82052912 | ID=MsG0280011292.01.T01:exon:12186;Parent=MsG0280011292.01.T01 |
Chr2 | exon | 82052725 | 82052816 | 82052725 | ID=MsG0280011292.01.T01:exon:12185;Parent=MsG0280011292.01.T01 |
Chr2 | CDS | 82053798 | 82053933 | 82053798 | ID=MsG0280011292.01.T01:cds;Parent=MsG0280011292.01.T01 |
Chr2 | CDS | 82053212 | 82053283 | 82053212 | ID=MsG0280011292.01.T01:cds;Parent=MsG0280011292.01.T01 |
Chr2 | CDS | 82052912 | 82053124 | 82052912 | ID=MsG0280011292.01.T01:cds;Parent=MsG0280011292.01.T01 |
Chr2 | CDS | 82052725 | 82052816 | 82052725 | ID=MsG0280011292.01.T01:cds;Parent=MsG0280011292.01.T01 |
Gene Sequence |
Protein sequence |