AlfalfaGEDB | MsG0480023262.01

M. sativa cultivar ZhongmuNo.1 / MsG0480023262.01

KEGG: K02542
GO: GO:0003677 GO:0005524 GO:0006270
PFAM: PF00493 PF13456

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480023262.01.T01	XP_013446774.1	75.562	356	18	3	370	656	480	835	4.85E-166	506
MsG0480023262.01.T01	XP_013446774.1	97.222	108	3	0	247	354	220	327	1.58E-56	217

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480023262.01.T01	Q6F353	51.852	351	99	7	370	656	486	830	1.07E-92	308

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480023262.01.T01	A0A072TUF1	75.562	356	18	3	370	656	480	835	2.32e-166	506

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047974.01	MsG0480023262.01	0.805594	1.238148e-49	6.576636e-47
MsG0080048291.01	MsG0480023262.01	0.805544	1.268180e-49	6.727519e-47
MsG0080048311.01	MsG0480023262.01	0.806419	8.303533e-50	4.504596e-47
MsG0080048781.01	MsG0480023262.01	0.851394	9.131709e-61	1.845841e-57
MsG0080049140.01	MsG0480023262.01	0.902306	1.109267e-78	1.560659e-74
MsG0180000111.01	MsG0480023262.01	0.810523	1.104950e-50	6.675356e-48
MsG0180000275.01	MsG0480023262.01	0.805264	1.452005e-49	7.647177e-47
MsG0180000314.01	MsG0480023262.01	0.855394	6.496272e-62	1.497843e-58
MsG0180000348.01	MsG0480023262.01	0.842108	3.162102e-58	4.745166e-55
MsG0180000353.01	MsG0480023262.01	0.830143	3.467018e-55	3.621838e-52

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480023262.01.T01	MTR_8g090000	75.562	356	18	3	370	656	480	835	5.87e-170	506
MsG0480023262.01.T01	MTR_8g090000	97.222	108	3	0	247	354	220	327	1.91e-60	217
MsG0480023262.01.T01	MTR_8g090000	86.842	38	3	1	190	225	60	97	5.67e-13	72.8
MsG0480023262.01.T01	MTR_2g437540	54.046	346	81	5	370	653	482	811	2.95e-104	335
MsG0480023262.01.T01	MTR_2g437540	83.333	108	18	0	247	354	222	329	5.11e-51	190
MsG0480023262.01.T01	MTR_0093s0070	46.448	183	39	5	1	159	56	203	1.39e-37	139
MsG0480023262.01.T01	MTR_8g098925	69.880	83	25	0	82	164	68	150	2.94e-34	128
MsG0480023262.01.T01	MTR_4g029360	38.835	206	83	2	10	172	15	220	9.29e-34	129
MsG0480023262.01.T01	MTR_6g089560	54.839	93	42	0	72	164	109	201	3.56e-28	113
MsG0480023262.01.T01	MTR_1g017840	59.091	88	36	0	72	159	71	158	6.02e-28	110

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480023262.01.T01	AT5G44635	47.486	358	109	6	370	656	482	831	2.98e-88	293
MsG0480023262.01.T01	AT5G44635	74.312	109	27	1	247	354	221	329	9.98e-44	169
MsG0480023262.01.T01	AT5G44635	44.531	384	108	7	370	656	482	857	7.71e-84	282
MsG0480023262.01.T01	AT5G44635	74.528	106	27	0	247	352	221	326	1.01e-43	169
MsG0480023262.01.T01	AT2G16440	46.226	106	55	2	370	473	572	677	2.50e-20	96.3
MsG0480023262.01.T01	AT4G02060	39.548	177	91	7	302	473	403	568	6.87e-20	94.7
MsG0480023262.01.T01	AT4G02060	39.548	177	91	7	302	473	403	568	6.87e-20	94.7
MsG0480023262.01.T01	AT3G09660	41.346	104	51	2	359	462	482	575	4.16e-18	89.4
MsG0480023262.01.T01	AT3G09660	41.346	104	51	2	359	462	482	575	4.54e-18	89.0
MsG0480023262.01.T01	AT3G09660	41.346	104	51	2	359	462	482	575	4.60e-18	89.0

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Find 161 sgRNAs with CRISPR-Local

Find 610 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATAATTACAGTTCCGTGG+AGG	0.693918	4:-82854682	MsG0480023262.01.T01:CDS
AAATCTCAAACTTTGGCAAG+AGG	0.602965	4:-82863511	MsG0480023262.01.T01:CDS
AAATGATAGAACTTTGGCTG+TGG	0.600445	4:-82854436	MsG0480023262.01.T01:CDS
AACCTTGAAAGTATAGCCGG+TGG	0.648631	4:+82856003	None:intergenic
AACGATGCTGATGGTCAAGC+TGG	0.508931	4:-82855254	MsG0480023262.01.T01:CDS
AACGATTTGTAGCTGTCCTT+TGG	0.371484	4:-82863551	MsG0480023262.01.T01:CDS
AACGCAAGGGTGCTTCATCT+GGG	0.544757	4:-82858028	MsG0480023262.01.T01:CDS
AAGACGCATGACAAGGGCCT+TGG	0.449057	4:+82855043	None:intergenic
AAGCTTGCAGCTCAAGACAA+AGG	0.610528	4:+82854316	None:intergenic
AAGTGAAAATGATTAACTAC+AGG	0.565779	4:+82854103	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATCAATGAACATGGTGT+TGG	+	Chr4:82858700-82858719	None:intergenic	30.0%
AAAATGTGCTCGATCAATTT+CGG	+	Chr4:82855276-82855295	None:intergenic	30.0%
AAATATTAGGGGGAAATAAC+AGG	+	Chr4:82860247-82860266	None:intergenic	30.0%
AAGAGAGCAAATTTACTGAT+TGG	-	Chr4:82859484-82859503	MsG0480023262.01.T01:intron	30.0%
AATATTAGGGGGAAATAACA+GGG	+	Chr4:82860246-82860265	None:intergenic	30.0%
AATGATAATAACGATGCTGA+TGG	-	Chr4:82862586-82862605	MsG0480023262.01.T01:intron	30.0%
ACCACTTATCTGAATAAAAG+CGG	-	Chr4:82856743-82856762	MsG0480023262.01.T01:intron	30.0%
ACTCAAAACAAATATGTGCA+AGG	+	Chr4:82854152-82854171	None:intergenic	30.0%
ACTTCATCAATATGAGAAGT+CGG	+	Chr4:82857546-82857565	None:intergenic	30.0%
AGAAAAACAATCAATAGGAG+CGG	+	Chr4:82856982-82857001	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	82854107	82863764	82854107	ID=MsG0480023262.01;Name=MsG0480023262.01
Chr4	mRNA	82854107	82863764	82854107	ID=MsG0480023262.01.T01;Parent=MsG0480023262.01;Name=MsG0480023262.01.T01;_AED=0.32;_eAED=0.32;_QI=0\|0.43\|0.41\|1\|1\|1\|17\|306\|656
Chr4	exon	82854107	82854556	82854107	ID=MsG0480023262.01.T01:exon:5417;Parent=MsG0480023262.01.T01
Chr4	exon	82854641	82854771	82854641	ID=MsG0480023262.01.T01:exon:5416;Parent=MsG0480023262.01.T01
Chr4	exon	82855012	82855137	82855012	ID=MsG0480023262.01.T01:exon:5415;Parent=MsG0480023262.01.T01
Chr4	exon	82855219	82855316	82855219	ID=MsG0480023262.01.T01:exon:5414;Parent=MsG0480023262.01.T01
Chr4	exon	82855448	82855503	82855448	ID=MsG0480023262.01.T01:exon:5413;Parent=MsG0480023262.01.T01
Chr4	exon	82855837	82856040	82855837	ID=MsG0480023262.01.T01:exon:5412;Parent=MsG0480023262.01.T01
Chr4	exon	82856129	82856216	82856129	ID=MsG0480023262.01.T01:exon:5411;Parent=MsG0480023262.01.T01
Chr4	exon	82857088	82857149	82857088	ID=MsG0480023262.01.T01:exon:5410;Parent=MsG0480023262.01.T01
Chr4	exon	82857785	82857859	82857785	ID=MsG0480023262.01.T01:exon:5409;Parent=MsG0480023262.01.T01
Chr4	exon	82857947	82858142	82857947	ID=MsG0480023262.01.T01:exon:5408;Parent=MsG0480023262.01.T01
Chr4	exon	82858255	82858310	82858255	ID=MsG0480023262.01.T01:exon:5407;Parent=MsG0480023262.01.T01
Chr4	exon	82858869	82858992	82858869	ID=MsG0480023262.01.T01:exon:5406;Parent=MsG0480023262.01.T01
Chr4	exon	82859095	82859120	82859095	ID=MsG0480023262.01.T01:exon:5405;Parent=MsG0480023262.01.T01
Chr4	exon	82859351	82859458	82859351	ID=MsG0480023262.01.T01:exon:5404;Parent=MsG0480023262.01.T01
Chr4	exon	82862983	82863228	82862983	ID=MsG0480023262.01.T01:exon:5403;Parent=MsG0480023262.01.T01
Chr4	exon	82863431	82863645	82863431	ID=MsG0480023262.01.T01:exon:5402;Parent=MsG0480023262.01.T01
Chr4	exon	82863749	82863764	82863749	ID=MsG0480023262.01.T01:exon:5401;Parent=MsG0480023262.01.T01
Chr4	CDS	82863749	82863764	82863749	ID=MsG0480023262.01.T01:cds;Parent=MsG0480023262.01.T01
Chr4	CDS	82863431	82863645	82863431	ID=MsG0480023262.01.T01:cds;Parent=MsG0480023262.01.T01
Chr4	CDS	82862983	82863228	82862983	ID=MsG0480023262.01.T01:cds;Parent=MsG0480023262.01.T01
Chr4	CDS	82859351	82859458	82859351	ID=MsG0480023262.01.T01:cds;Parent=MsG0480023262.01.T01
Chr4	CDS	82859095	82859120	82859095	ID=MsG0480023262.01.T01:cds;Parent=MsG0480023262.01.T01
Chr4	CDS	82858869	82858992	82858869	ID=MsG0480023262.01.T01:cds;Parent=MsG0480023262.01.T01
Chr4	CDS	82858255	82858310	82858255	ID=MsG0480023262.01.T01:cds;Parent=MsG0480023262.01.T01
Chr4	CDS	82857947	82858142	82857947	ID=MsG0480023262.01.T01:cds;Parent=MsG0480023262.01.T01
Chr4	CDS	82857785	82857859	82857785	ID=MsG0480023262.01.T01:cds;Parent=MsG0480023262.01.T01
Chr4	CDS	82857088	82857149	82857088	ID=MsG0480023262.01.T01:cds;Parent=MsG0480023262.01.T01
Chr4	CDS	82856129	82856216	82856129	ID=MsG0480023262.01.T01:cds;Parent=MsG0480023262.01.T01
Chr4	CDS	82855837	82856040	82855837	ID=MsG0480023262.01.T01:cds;Parent=MsG0480023262.01.T01
Chr4	CDS	82855448	82855503	82855448	ID=MsG0480023262.01.T01:cds;Parent=MsG0480023262.01.T01
Chr4	CDS	82855219	82855316	82855219	ID=MsG0480023262.01.T01:cds;Parent=MsG0480023262.01.T01
Chr4	CDS	82855012	82855137	82855012	ID=MsG0480023262.01.T01:cds;Parent=MsG0480023262.01.T01
Chr4	CDS	82854641	82854771	82854641	ID=MsG0480023262.01.T01:cds;Parent=MsG0480023262.01.T01
Chr4	CDS	82854413	82854556	82854413	ID=MsG0480023262.01.T01:cds;Parent=MsG0480023262.01.T01
Chr4	three_prime_UTR	82854107	82854412	82854107	ID=MsG0480023262.01.T01:three_prime_utr;Parent=MsG0480023262.01.T01

Gene Sequence

>MsG0480023262.01.T01

ATGTCCCACAAGTTGTGTGTTTCTCGAAAAGAATCAGCAGTTGATGCTATTTTCGAATTGTTACATCAGCTCTCGCAAGAACTTGGTCAACGATTTGTAGCTGTCCTTTGGAGCCTCTGGAAGCATAGAAATCTCAAACTTTGGCAAGAGGCCACAGAAACATGTGCTCATGTAGTAGATCGGGCTTGTCATCTTATGGAGGATTGGCATGCAGCTAATGCTACTCTTCCGTTGAATAGAACATGTATTGGAATATGTATCCGTGATGATGAAGGTACCTTTGTGTTGGCTCAAACCATCCCGCTCTCTCCTGTGTATTTTGTTGCCGTCGGAGAAGCCTTGGGTTTATTCCACGCCTTACAATGGCTAAGTGACATGCAATTTGACGACGTCGATGTCGTCTTGGATTCAAAGATTACAATAGACGCCTTCCATCATTGTGAGGTTGATGTTACGGAATTTGGACAAGTAATTTCAGTTTCAGAGAAGCTTCAACCGTTCAGCGAAAATGGAAGCATTCGGTGGTTGATGGTTGATGAGACAGCCGTTAGGGTTGAAAACGCTTCTCTTAGATTTTCTCAAAAGAAAGCTATCTCTGATGAATATTTGAGGTTCGAACCTTACTTGCAGAATGCCTGCAAGAGGTTTGTTATGGAGCTTAAGCCGACATTCATTCTGATGATAACCCTAACAAGGATATCAACGTTGCCTTCTATAACATTCCATTGTCAAGAGGTCTTGGATGTTATTCTTCGTCATGAGATTGTAGAACATGCTAGGGCTGGTGACACGGTGATTTTTACTGGAACTGTAATTGTCATACCTGATATATTGGCGTTGGCTTCCCCTGGAGAGAGATCAGAATGTCGTAGGGAAGCTTCTCAACGCAAGGGTGCTTCATCTGGGAATGAAGGTGTGAGGGGCCTTAGGGCTTGGGATCAGAGAGACCTCTCCTACCGACTTGCTTTTATTGCCAACTCTGTTCAGATTTGTGATGGTAGAAGAGAAATAGACATCAGGAATAGAAAGAAGGATTCAGATGAAGATGATCTGCAATTCACTGTATTCACTTCAAGCATGTTCCAAATCTGTGTATACATCTGGAAGTCATCATCTGCTGCTGGAATACAAGCAACACTCAATGCTCGTACTTCCATTCTTGCCGCTGCCAACCCTGCTGGAGGACGGTATGATAAGTCTAAACCACTGAAGTACAATGTGGCTCTTCCACCGGCTATACTTTCAAGGTTTGATCTTGTATACATTATGATTGATGACCCAGACGATGTTACAGATTACCACATAGCTTCTCATATTGTGCGAGTTCATCAAAAGCGCGAAGAAGCTCTTGCTCCAACGTTCACTACAGCAGAACTGAAGCGTTATATAGCCTATGCAAAAACTCTTAAACCAAAGGTACAACCTCGTCATGTTCGTTTAGCAGTAAAACTGCTGCAAACTTCTATAATAAGATATGGACGAAGAAGCAGTAGTGACGATGGAAATGATAATAACGATGCTGATGGTCAAGCTGGAAACTCTACTGCTCAGGAAGCCGCTGGAACCAATGAAAAACCAGCCGATGGATCTAACCCCCAAAGAAAAAAATCTACTGTAACTGATGAATACTTTCAAAGGATCACCAAGGCCCTTGTCATGCGTCTTAGACAGCACGAGGAGACCGTAATGCAAGAAGGAAGTGGCTTAGCTGGGATGAAGCAACGGGATTTGATTAAATGGTATGTAGACCAGCAAAATGAGAAAAATAATTACAGTTCCGTGGAGGAGGCGAAAGTTGAAATTTCCCAAATTAAAGCAATTATAGAGATTTTAATTCGAAGAGAGGGGCATTTGATCGTGATAGATGATGGCAGGCAAGCAGCATCAGAAGCTGCTGGTGCAGAACAATCAGAGTCTGCTGCTAGAAATGATAGAACTTTGGCTGTGGCTCCTAATTATGTTGTTGATTAA

Protein sequence

>MsG0480023262.01.T01

MSHKLCVSRKESAVDAIFELLHQLSQELGQRFVAVLWSLWKHRNLKLWQEATETCAHVVDRACHLMEDWHAANATLPLNRTCIGICIRDDEGTFVLAQTIPLSPVYFVAVGEALGLFHALQWLSDMQFDDVDVVLDSKITIDAFHHCEVDVTEFGQVISVSEKLQPFSENGSIRWLMVDETAVRVENASLRFSQKKAISDEYLRFEPYLQNACKRFVMELKPTFILMITLTRISTLPSITFHCQEVLDVILRHEIVEHARAGDTVIFTGTVIVIPDILALASPGERSECRREASQRKGASSGNEGVRGLRAWDQRDLSYRLAFIANSVQICDGRREIDIRNRKKDSDEDDLQFTVFTSSMFQICVYIWKSSSAAGIQATLNARTSILAAANPAGGRYDKSKPLKYNVALPPAILSRFDLVYIMIDDPDDVTDYHIASHIVRVHQKREEALAPTFTTAELKRYIAYAKTLKPKVQPRHVRLAVKLLQTSIIRYGRRSSSDDGNDNNDADGQAGNSTAQEAAGTNEKPADGSNPQRKKSTVTDEYFQRITKALVMRLRQHEETVMQEGSGLAGMKQRDLIKWYVDQQNEKNNYSSVEEAKVEISQIKAIIEILIRREGHLIVIDDGRQAASEAAGAEQSESAARNDRTLAVAPNYVVD*