Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016566.01.T01 | XP_003602304.1 | 92.982 | 171 | 3 | 1 | 1 | 171 | 1 | 162 | 7.32E-111 | 322 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016566.01.T01 | G7J857 | 92.982 | 171 | 3 | 1 | 1 | 171 | 1 | 162 | 3.50e-111 | 322 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048464.01 | MsG0380016566.01 | 0.824099 | 9.695680e-54 | 8.505272e-51 |
| MsG0180000091.01 | MsG0380016566.01 | 0.814084 | 1.844914e-51 | 1.226073e-48 |
| MsG0180000114.01 | MsG0380016566.01 | 0.809916 | 1.493400e-50 | 8.879909e-48 |
| MsG0180001088.01 | MsG0380016566.01 | 0.806168 | 9.375722e-50 | 5.054157e-47 |
| MsG0180001149.01 | MsG0380016566.01 | 0.809476 | 1.857047e-50 | 1.091409e-47 |
| MsG0180002955.01 | MsG0380016566.01 | 0.809082 | 2.255209e-50 | 1.311587e-47 |
| MsG0180003189.01 | MsG0380016566.01 | 0.808734 | 2.677459e-50 | 1.542697e-47 |
| MsG0180003357.01 | MsG0380016566.01 | 0.846997 | 1.527444e-59 | 2.676650e-56 |
| MsG0180004390.01 | MsG0380016566.01 | 0.818313 | 2.091908e-52 | 1.560477e-49 |
| MsG0180005160.01 | MsG0380016566.01 | 0.801333 | 9.459870e-49 | 4.505741e-46 |
| MsG0180005354.01 | MsG0380016566.01 | 0.812157 | 4.882620e-51 | 3.081065e-48 |
| MsG0180005509.01 | MsG0380016566.01 | 0.805628 | 1.218111e-49 | 6.475962e-47 |
| MsG0180005730.01 | MsG0380016566.01 | 0.832441 | 9.437851e-56 | 1.054997e-52 |
| MsG0180005732.01 | MsG0380016566.01 | 0.815330 | 9.771985e-52 | 6.717350e-49 |
| MsG0180005960.01 | MsG0380016566.01 | 0.822390 | 2.430243e-53 | 2.031471e-50 |
| MsG0180006096.01 | MsG0380016566.01 | 0.804942 | 1.695659e-49 | 8.857887e-47 |
| MsG0180006134.01 | MsG0380016566.01 | 0.805359 | 1.386478e-49 | 7.320562e-47 |
| MsG0280010598.01 | MsG0380016566.01 | 0.829042 | 6.423755e-55 | 6.497806e-52 |
| MsG0280010916.01 | MsG0380016566.01 | 0.826155 | 3.168644e-54 | 2.947703e-51 |
| MsG0280011073.01 | MsG0380016566.01 | 0.805774 | 1.134771e-49 | 6.055818e-47 |
| MsG0280011272.01 | MsG0380016566.01 | -0.822119 | 2.808566e-53 | 2.329379e-50 |
| MsG0280011330.01 | MsG0380016566.01 | 0.836091 | 1.146669e-56 | 1.430113e-53 |
| MsG0280011401.01 | MsG0380016566.01 | 0.823232 | 1.547187e-53 | 1.324436e-50 |
| MsG0380011669.01 | MsG0380016566.01 | 0.811640 | 6.327209e-51 | 3.937254e-48 |
| MsG0380011744.01 | MsG0380016566.01 | 0.811291 | 7.536509e-51 | 4.646789e-48 |
| MsG0380012005.01 | MsG0380016566.01 | 0.820667 | 6.077470e-53 | 4.839001e-50 |
| MsG0380012184.01 | MsG0380016566.01 | 0.840028 | 1.112390e-57 | 1.564731e-54 |
| MsG0380012249.01 | MsG0380016566.01 | 0.807450 | 5.023917e-50 | 2.799249e-47 |
| MsG0380013176.01 | MsG0380016566.01 | 0.811043 | 8.526054e-51 | 5.223231e-48 |
| MsG0380013853.01 | MsG0380016566.01 | 0.836683 | 8.107053e-57 | 1.029206e-53 |
| MsG0380014727.01 | MsG0380016566.01 | 0.850858 | 1.294063e-60 | 2.570008e-57 |
| MsG0380014866.01 | MsG0380016566.01 | 0.854696 | 1.036097e-61 | 2.333724e-58 |
| MsG0380015215.01 | MsG0380016566.01 | -0.803870 | 2.836128e-49 | 1.441191e-46 |
| MsG0380015745.01 | MsG0380016566.01 | 0.809944 | 1.472856e-50 | 8.764125e-48 |
| MsG0380016182.01 | MsG0380016566.01 | 0.810936 | 8.993336e-51 | 5.494120e-48 |
| MsG0380016566.01 | MsG0380016740.01 | 0.825375 | 4.851151e-54 | 4.413639e-51 |
| MsG0380016566.01 | MsG0380017048.01 | 0.807495 | 4.916946e-50 | 2.742757e-47 |
| MsG0380016566.01 | MsG0380017293.01 | 0.820718 | 5.916528e-53 | 4.717708e-50 |
| MsG0380016566.01 | MsG0380017322.01 | 0.831453 | 1.654959e-55 | 1.796784e-52 |
| MsG0380016566.01 | MsG0380018022.01 | 0.804629 | 1.970599e-49 | 1.021035e-46 |
| MsG0380016566.01 | MsG0480019035.01 | 0.814373 | 1.592483e-51 | 1.066675e-48 |
| MsG0380016566.01 | MsG0480019335.01 | 0.823269 | 1.516759e-53 | 1.299727e-50 |
| MsG0380016566.01 | MsG0480020024.01 | 0.819857 | 9.315603e-53 | 7.253211e-50 |
| MsG0380016566.01 | MsG0480021869.01 | 0.847443 | 1.152581e-59 | 2.049017e-56 |
| MsG0380016566.01 | MsG0480021959.01 | 0.800426 | 1.449034e-48 | 6.745320e-46 |
| MsG0380016566.01 | MsG0480021998.01 | 0.818284 | 2.124264e-52 | 1.583280e-49 |
| MsG0380016566.01 | MsG0480023045.01 | 0.800281 | 1.551414e-48 | 7.195223e-46 |
| MsG0380016566.01 | MsG0480023251.01 | 0.812682 | 3.748997e-51 | 2.399068e-48 |
| MsG0380016566.01 | MsG0480023638.01 | 0.833179 | 6.188803e-56 | 7.072134e-53 |
| MsG0380016566.01 | MsG0480023670.01 | 0.803017 | 4.260251e-49 | 2.117758e-46 |
| MsG0380016566.01 | MsG0480023937.01 | 0.835410 | 1.705179e-56 | 2.083462e-53 |
| MsG0380016566.01 | MsG0580024829.01 | 0.838678 | 2.492774e-57 | 3.363460e-54 |
| MsG0380016566.01 | MsG0580024830.01 | 0.803915 | 2.776010e-49 | 1.412304e-46 |
| MsG0380016566.01 | MsG0580026032.01 | 0.805850 | 1.094034e-49 | 5.849903e-47 |
| MsG0380016566.01 | MsG0580027923.01 | 0.806414 | 8.322605e-50 | 4.514402e-47 |
| MsG0380016566.01 | MsG0580029195.01 | 0.816388 | 5.673276e-52 | 4.014503e-49 |
| MsG0380016566.01 | MsG0580029879.01 | 0.822223 | 2.657861e-53 | 2.210936e-50 |
| MsG0380016566.01 | MsG0580030142.01 | 0.817238 | 3.658330e-52 | 2.649560e-49 |
| MsG0380016566.01 | MsG0680030616.01 | 0.821829 | 3.279314e-53 | 2.697595e-50 |
| MsG0380016566.01 | MsG0680030992.01 | 0.813676 | 2.269433e-51 | 1.491641e-48 |
| MsG0380016566.01 | MsG0680031377.01 | -0.820257 | 7.548440e-53 | 5.942765e-50 |
| MsG0380016566.01 | MsG0680032058.01 | 0.801484 | 8.808995e-49 | 4.211796e-46 |
| MsG0380016566.01 | MsG0680033465.01 | 0.851186 | 1.045526e-60 | 2.099073e-57 |
| MsG0380016566.01 | MsG0680034235.01 | 0.846574 | 1.993794e-59 | 3.446762e-56 |
| MsG0380016566.01 | MsG0680035844.01 | 0.814817 | 1.269948e-51 | 8.608681e-49 |
| MsG0380016566.01 | MsG0780036117.01 | 0.821111 | 4.804125e-53 | 3.873137e-50 |
| MsG0380016566.01 | MsG0780036128.01 | 0.817199 | 3.733054e-52 | 2.700796e-49 |
| MsG0380016566.01 | MsG0780036183.01 | 0.810763 | 9.806249e-51 | 5.962676e-48 |
| MsG0380016566.01 | MsG0780037701.01 | 0.814695 | 1.351618e-51 | 9.132188e-49 |
| MsG0380016566.01 | MsG0780038644.01 | 0.847913 | 8.558344e-60 | 1.544354e-56 |
| MsG0380016566.01 | MsG0780038833.01 | 0.823781 | 1.151525e-53 | 1.001275e-50 |
| MsG0380016566.01 | MsG0780038907.01 | 0.805483 | 1.306381e-49 | 6.919368e-47 |
| MsG0380016566.01 | MsG0780039143.01 | 0.817973 | 2.497095e-52 | 1.845331e-49 |
| MsG0380016566.01 | MsG0780039573.01 | 0.814542 | 1.460890e-51 | 9.830214e-49 |
| MsG0380016566.01 | MsG0780039832.01 | 0.813147 | 2.965395e-51 | 1.921116e-48 |
| MsG0380016566.01 | MsG0780039964.01 | 0.810593 | 1.067032e-50 | 6.458623e-48 |
| MsG0380016566.01 | MsG0780041187.01 | 0.833857 | 4.189850e-56 | 4.886559e-53 |
| MsG0380016566.01 | MsG0780041387.01 | 0.812673 | 3.765686e-51 | 2.409176e-48 |
| MsG0380016566.01 | MsG0780041432.01 | 0.810218 | 1.286042e-50 | 7.706883e-48 |
| MsG0380016566.01 | MsG0880041852.01 | 0.805148 | 1.535596e-49 | 8.063819e-47 |
| MsG0380016566.01 | MsG0880042031.01 | 0.802921 | 4.459332e-49 | 2.211446e-46 |
| MsG0380016566.01 | MsG0880042161.01 | 0.823850 | 1.109368e-53 | 9.664422e-51 |
| MsG0380016566.01 | MsG0880042616.01 | 0.823912 | 1.072709e-53 | 9.361359e-51 |
| MsG0380016566.01 | MsG0880042622.01 | 0.848389 | 6.323265e-60 | 1.158575e-56 |
| MsG0380016566.01 | MsG0880042700.01 | 0.830442 | 2.929386e-55 | 3.086571e-52 |
| MsG0380016566.01 | MsG0880043014.01 | 0.807802 | 4.230709e-50 | 2.378882e-47 |
| MsG0380016566.01 | MsG0880044131.01 | 0.811804 | 5.829920e-51 | 3.643700e-48 |
| MsG0380016566.01 | MsG0880045387.01 | 0.849932 | 2.353809e-60 | 4.535207e-57 |
| MsG0380016566.01 | MsG0880045765.01 | 0.801235 | 9.910246e-49 | 4.708649e-46 |
| MsG0380016566.01 | MsG0880045926.01 | 0.828459 | 8.885360e-55 | 8.837502e-52 |
| MsG0380016566.01 | MsG0880046359.01 | 0.811001 | 8.709132e-51 | 5.329827e-48 |
| MsG0380016566.01 | MsG0880046809.01 | 0.814502 | 1.490983e-51 | 1.002243e-48 |
| MsG0380016566.01 | MsG0880047252.01 | 0.816964 | 4.214296e-52 | 3.029756e-49 |
| MsG0380016566.01 | MsG0880047267.01 | 0.853348 | 2.536702e-61 | 5.464621e-58 |
| MsG0280006634.01 | MsG0380016566.01 | 0.802267 | 6.085364e-49 | 2.967935e-46 |
| MsG0280006669.01 | MsG0380016566.01 | 0.840486 | 8.447435e-58 | 1.205070e-54 |
| MsG0280007118.01 | MsG0380016566.01 | 0.826666 | 2.393588e-54 | 2.259385e-51 |
| MsG0280007531.01 | MsG0380016566.01 | 0.815892 | 7.325195e-52 | 5.113206e-49 |
| MsG0280008112.01 | MsG0380016566.01 | 0.819535 | 1.103754e-52 | 8.517021e-50 |
| MsG0280008113.01 | MsG0380016566.01 | 0.847403 | 1.182340e-59 | 2.099138e-56 |
| MsG0280008765.01 | MsG0380016566.01 | 0.803763 | 2.985108e-49 | 1.512667e-46 |
| MsG0280008932.01 | MsG0380016566.01 | 0.813309 | 2.731590e-51 | 1.777604e-48 |
| MsG0280010184.01 | MsG0380016566.01 | 0.802040 | 6.773416e-49 | 3.284472e-46 |
| MsG0280010349.01 | MsG0380016566.01 | 0.822341 | 2.495007e-53 | 2.082614e-50 |
| MsG0280010517.01 | MsG0380016566.01 | 0.820021 | 8.547786e-53 | 6.686219e-50 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016566.01.T01 | MTR_3g092020 | 92.982 | 171 | 3 | 1 | 1 | 171 | 1 | 162 | 8.86e-115 | 322 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 36 sgRNAs with CRISPR-Local
Find 122 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAAGGTAAGGTTTCCATTT+TGG | 0.114718 | 3:-85237430 | None:intergenic |
| CTCCCCATCTCTCCTTAAAA+AGG | 0.245866 | 3:-85238590 | None:intergenic |
| CACTGTGAACTTTCACTATT+GGG | 0.252264 | 3:-85239399 | None:intergenic |
| CCACTGTGAACTTTCACTAT+TGG | 0.288552 | 3:-85239400 | None:intergenic |
| GTTATATCTTACTACAATAT+TGG | 0.321352 | 3:+85239526 | MsG0380016566.01.T01:three_prime_UTR |
| CTATAATCTAATCCCCAAAA+TGG | 0.329374 | 3:+85237416 | MsG0380016566.01.T01:exon |
| AAAACAATTTGTCAAATTCA+AGG | 0.363779 | 3:-85238514 | None:intergenic |
| AAAGGTAGCAACAGTTTCCT+TGG | 0.390750 | 3:-85237335 | None:intergenic |
| CAAAATGGAAACCTTACCTT+TGG | 0.392712 | 3:+85237431 | MsG0380016566.01.T01:exon |
| CTCCTCTTGGTTCAAAATCA+TGG | 0.393681 | 3:+85238634 | MsG0380016566.01.T01:CDS |
| GAGATCATGTCGAGGAATCT+TGG | 0.402090 | 3:+85239288 | MsG0380016566.01.T01:CDS |
| AATATATAATTTAATTATCA+AGG | 0.424029 | 3:-85239582 | None:intergenic |
| TGGCCTCGGACAATGCTCTA+TGG | 0.432233 | 3:+85238562 | MsG0380016566.01.T01:CDS |
| TTATATCACACGGCTGCGTT+TGG | 0.432650 | 3:-85239359 | None:intergenic |
| CATACAGATTTCCAAAGGTA+AGG | 0.450513 | 3:-85237442 | None:intergenic |
| ACTTTCACTATTGGGTTGAA+TGG | 0.462372 | 3:-85239391 | None:intergenic |
| GGTGAGGTACAACGATATCT+AGG | 0.477811 | 3:+85239181 | MsG0380016566.01.T01:CDS |
| AGTTCAGAAACAGACTTCAC+TGG | 0.488792 | 3:+85239244 | MsG0380016566.01.T01:CDS |
| GAAGTGGAAGCTCATGGCCT+CGG | 0.508465 | 3:+85238548 | MsG0380016566.01.T01:CDS |
| GGTTTGAAGATTGTTAGAGA+AGG | 0.530829 | 3:+85239133 | MsG0380016566.01.T01:CDS |
| TTGTTGAGAAACAGCAAGAT+GGG | 0.537051 | 3:-85237490 | None:intergenic |
| ATCATGGAAAGAAGTGTATG+AGG | 0.545115 | 3:+85238650 | MsG0380016566.01.T01:CDS |
| CATCTTGCTGTTTCTCAACA+AGG | 0.545411 | 3:+85237492 | MsG0380016566.01.T01:CDS |
| CAAGATCGATGCGATCGAGT+TGG | 0.561970 | 3:+85238675 | MsG0380016566.01.T01:CDS |
| ATTGGGTTGAATGGTAGAGA+TGG | 0.590103 | 3:-85239382 | None:intergenic |
| CTGTAGGAAGTGGAAGCTCA+TGG | 0.592096 | 3:+85238542 | MsG0380016566.01.T01:CDS |
| CTTGTTGAGAAACAGCAAGA+TGG | 0.595023 | 3:-85237491 | None:intergenic |
| ATCTTCATACAGATTTCCAA+AGG | 0.614774 | 3:-85237447 | None:intergenic |
| GAGAAACAGCAAGATGGGTG+TGG | 0.636024 | 3:-85237485 | None:intergenic |
| GATATCGTTGTACCTCACCT+TGG | 0.640965 | 3:-85239177 | None:intergenic |
| CTATCTTGTTCACCAAGGTG+AGG | 0.666547 | 3:+85239165 | MsG0380016566.01.T01:CDS |
| GTAGAGATGGTTATATCACA+CGG | 0.677630 | 3:-85239369 | None:intergenic |
| TGACCATAGAGCATTGTCCG+AGG | 0.683112 | 3:-85238565 | None:intergenic |
| GCTGAAGAGAGATCATGTCG+AGG | 0.706201 | 3:+85239280 | MsG0380016566.01.T01:CDS |
| GACTACTATCTTGTTCACCA+AGG | 0.711703 | 3:+85239160 | MsG0380016566.01.T01:CDS |
| CCAATAGTGAAAGTTCACAG+TGG | 0.758241 | 3:+85239400 | MsG0380016566.01.T01:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTAATTAATAATAATTT+TGG | + | Chr3:85238863-85238882 | MsG0380016566.01.T01:intron | 0.0% |
| !!! | AAAAAATTAACAAATTGTTT+TGG | - | Chr3:85238329-85238348 | None:intergenic | 10.0% |
| !!! | TTTTAGAAGAAAAAAAATAT+GGG | - | Chr3:85238892-85238911 | None:intergenic | 10.0% |
| !! | AATTGAATCAATCATAATAT+TGG | + | Chr3:85238228-85238247 | MsG0380016566.01.T01:intron | 15.0% |
| !! | AATTGTATAACAAAATTTGT+TGG | - | Chr3:85237914-85237933 | None:intergenic | 15.0% |
| !! | TTTACTGTAATGATATAAAA+AGG | - | Chr3:85238210-85238229 | None:intergenic | 15.0% |
| !!! | AACAATAAAGATTGAATTTT+AGG | - | Chr3:85238122-85238141 | None:intergenic | 15.0% |
| !!! | ACAAAATTCTTTTTTTCATT+GGG | + | Chr3:85239311-85239330 | MsG0380016566.01.T01:CDS | 15.0% |
| !!! | ATAATTTGTTATGTTGAATA+TGG | - | Chr3:85238997-85239016 | None:intergenic | 15.0% |
| !!! | GTTTTAGAAGAAAAAAAATA+TGG | - | Chr3:85238893-85238912 | None:intergenic | 15.0% |
| !!! | TTATATATTCAGTTATTTTG+AGG | + | Chr3:85239596-85239615 | MsG0380016566.01.T01:three_prime_UTR | 15.0% |
| !!! | TTTTAATTCTTCACAAAATA+GGG | + | Chr3:85239111-85239130 | MsG0380016566.01.T01:intron | 15.0% |
| !!! | TTTTTAATTCTTCACAAAAT+AGG | + | Chr3:85239110-85239129 | MsG0380016566.01.T01:intron | 15.0% |
| !! | AAAACAATTTGTCAAATTCA+AGG | - | Chr3:85238517-85238536 | None:intergenic | 20.0% |
| !! | ATCAATCATAATATTGGATT+AGG | + | Chr3:85238234-85238253 | MsG0380016566.01.T01:intron | 20.0% |
| !! | GTTATATCTTACTACAATAT+TGG | + | Chr3:85239526-85239545 | MsG0380016566.01.T01:three_prime_UTR | 20.0% |
| !! | TATGTATGTATAAAAAACTG+TGG | + | Chr3:85239552-85239571 | MsG0380016566.01.T01:three_prime_UTR | 20.0% |
| !! | TTATTGCTTCAAATTAAACT+AGG | - | Chr3:85237958-85237977 | None:intergenic | 20.0% |
| !! | TTTAATTCTTCACAAAATAG+GGG | + | Chr3:85239112-85239131 | MsG0380016566.01.T01:intron | 20.0% |
| !!! | ATTTGAAATTCATAAGTCAA+CGG | - | Chr3:85237614-85237633 | None:intergenic | 20.0% |
| !!! | CAAAATTCTTTTTTTCATTG+GGG | + | Chr3:85239312-85239331 | MsG0380016566.01.T01:CDS | 20.0% |
| !!! | CTGAGTTTATTACATTATTT+TGG | + | Chr3:85238486-85238505 | MsG0380016566.01.T01:intron | 20.0% |
| !!! | GACAAAATTCTTTTTTTCAT+TGG | + | Chr3:85239310-85239329 | MsG0380016566.01.T01:CDS | 20.0% |
| !!! | TCAATCTTTATTGTTTTGAT+CGG | + | Chr3:85238127-85238146 | MsG0380016566.01.T01:intron | 20.0% |
| !!! | TTGTCAAATATCTTTTTAGA+GGG | - | Chr3:85238436-85238455 | None:intergenic | 20.0% |
| ! | AAAATCTCCTTCAATAATCA+TGG | - | Chr3:85238783-85238802 | None:intergenic | 25.0% |
| ! | AACCTATGTGTAACATTAAA+AGG | - | Chr3:85238360-85238379 | None:intergenic | 25.0% |
| ! | AATAACAATATTTCAACCGA+TGG | - | Chr3:85237649-85237668 | None:intergenic | 25.0% |
| ! | ATCTAGGTTCAAGAAAAAAT+CGG | + | Chr3:85239197-85239216 | MsG0380016566.01.T01:CDS | 25.0% |
| ! | CAAGAATATAAAAATGACGA+TGG | - | Chr3:85237548-85237567 | None:intergenic | 25.0% |
| ! | GTTTCAAGAAAGAGAAAAAA+AGG | - | Chr3:85237356-85237375 | None:intergenic | 25.0% |
| ! | TCTTTATCATAAAACAGTGT+TGG | + | Chr3:85237768-85237787 | MsG0380016566.01.T01:intron | 25.0% |
| ! | TGTTGGATATCATATGATAT+AGG | - | Chr3:85237897-85237916 | None:intergenic | 25.0% |
| ! | TTAAATGCCATGATTATTGA+AGG | + | Chr3:85238773-85238792 | MsG0380016566.01.T01:intron | 25.0% |
| ! | TTATTAGATCTGAATCTGTA+TGG | + | Chr3:85237664-85237683 | MsG0380016566.01.T01:intron | 25.0% |
| !! | ACTGTGATTTTATGATACAT+TGG | + | Chr3:85238163-85238182 | MsG0380016566.01.T01:intron | 25.0% |
| !! | CTTGTCAAATATCTTTTTAG+AGG | - | Chr3:85238437-85238456 | None:intergenic | 25.0% |
| !! | TTCCTTTTAATGTTACACAT+AGG | + | Chr3:85238355-85238374 | MsG0380016566.01.T01:intron | 25.0% |
| AAATATGAATCAAGTCCATG+TGG | - | Chr3:85238086-85238105 | None:intergenic | 30.0% | |
| ATAATTTGAGAAAGACAGAC+AGG | - | Chr3:85237710-85237729 | None:intergenic | 30.0% | |
| ATCTTCATACAGATTTCCAA+AGG | - | Chr3:85237450-85237469 | None:intergenic | 30.0% | |
| CTATAATCTAATCCCCAAAA+TGG | + | Chr3:85237416-85237435 | MsG0380016566.01.T01:exon | 30.0% | |
| TTATTGAACTCTGACACAAA+GGG | + | Chr3:85239080-85239099 | MsG0380016566.01.T01:intron | 30.0% | |
| TTTCTGCACACTTATAACAT+TGG | + | Chr3:85238927-85238946 | MsG0380016566.01.T01:intron | 30.0% | |
| ! | AAAGGTAAGGTTTCCATTTT+GGG | - | Chr3:85237432-85237451 | None:intergenic | 30.0% |
| ! | TCTATGGTCAAACCTTTTTA+AGG | + | Chr3:85238578-85238597 | MsG0380016566.01.T01:CDS | 30.0% |
| ! | TTATCATAAAACAGTGTTGG+TGG | + | Chr3:85237771-85237790 | MsG0380016566.01.T01:intron | 30.0% |
| !! | AAACCTTTTTAAGGAGAGAT+GGG | + | Chr3:85238587-85238606 | MsG0380016566.01.T01:CDS | 30.0% |
| !! | CAAATTGTTTTACAGTCTGT+AGG | + | Chr3:85238526-85238545 | MsG0380016566.01.T01:CDS | 30.0% |
| !!! | TCTTTTTTTCATTGGGGATT+TGG | + | Chr3:85239318-85239337 | MsG0380016566.01.T01:CDS | 30.0% |
| !!! | TTTTGTTTTCTGCGAAGAAA+TGG | + | Chr3:85237837-85237856 | MsG0380016566.01.T01:intron | 30.0% |
| AAATCAGTTGCATGTTCCAT+CGG | + | Chr3:85237630-85237649 | MsG0380016566.01.T01:intron | 35.0% | |
| ATAATTGCAAGCGTGTGATT+AGG | - | Chr3:85238817-85238836 | None:intergenic | 35.0% | |
| ATAGGTTAAAACCGACGATT+TGG | + | Chr3:85238373-85238392 | MsG0380016566.01.T01:intron | 35.0% | |
| ATTATTCTTGTCCCTTGAGA+TGG | + | Chr3:85238832-85238851 | MsG0380016566.01.T01:intron | 35.0% | |
| ATTTGGCAACTGAGTGTTAA+CGG | + | Chr3:85238397-85238416 | MsG0380016566.01.T01:intron | 35.0% | |
| CAAAATGGAAACCTTACCTT+TGG | + | Chr3:85237431-85237450 | MsG0380016566.01.T01:exon | 35.0% | |
| CACACTTATAACATTGGTGT+TGG | + | Chr3:85238933-85238952 | MsG0380016566.01.T01:intron | 35.0% | |
| CACTGTGAACTTTCACTATT+GGG | - | Chr3:85239402-85239421 | None:intergenic | 35.0% | |
| CATACAGATTTCCAAAGGTA+AGG | - | Chr3:85237445-85237464 | None:intergenic | 35.0% | |
| CTAAAGCAAATCCAAGTAAG+AGG | - | Chr3:85238962-85238981 | None:intergenic | 35.0% | |
| CTTATTGAACTCTGACACAA+AGG | + | Chr3:85239079-85239098 | MsG0380016566.01.T01:intron | 35.0% | |
| GGATTAACAATATGTGACAG+AGG | - | Chr3:85237876-85237895 | None:intergenic | 35.0% | |
| GGTCAAATTCCAGATCATAA+TGG | - | Chr3:85238055-85238074 | None:intergenic | 35.0% | |
| GGTTTGAAGATTGTTAGAGA+AGG | + | Chr3:85239133-85239152 | MsG0380016566.01.T01:CDS | 35.0% | |
| GTAGAGATGGTTATATCACA+CGG | - | Chr3:85239372-85239391 | None:intergenic | 35.0% | |
| TTGTTGAGAAACAGCAAGAT+GGG | - | Chr3:85237493-85237512 | None:intergenic | 35.0% | |
| TTTGACCAAAATTTGCCACA+TGG | + | Chr3:85238068-85238087 | MsG0380016566.01.T01:intron | 35.0% | |
| ! | AAGGTAAGGTTTCCATTTTG+GGG | - | Chr3:85237431-85237450 | None:intergenic | 35.0% |
| ! | ATAATTTTCACGCCATCTCA+AGG | - | Chr3:85238847-85238866 | None:intergenic | 35.0% |
| ! | ATCATGGAAAGAAGTGTATG+AGG | + | Chr3:85238650-85238669 | MsG0380016566.01.T01:CDS | 35.0% |
| ! | CAAAGGTAAGGTTTCCATTT+TGG | - | Chr3:85237433-85237452 | None:intergenic | 35.0% |
| ! | CTGTGTTTCTTTGAAAAGCA+TGG | - | Chr3:85238021-85238040 | None:intergenic | 35.0% |
| ! | TAATTTTCACGCCATCTCAA+GGG | - | Chr3:85238846-85238865 | None:intergenic | 35.0% |
| ! | TTCCATGATTTTGAACCAAG+AGG | - | Chr3:85238639-85238658 | None:intergenic | 35.0% |
| !! | AAAACCGACGATTTGGTATT+TGG | + | Chr3:85238380-85238399 | MsG0380016566.01.T01:intron | 35.0% |
| !! | AACCTTTTTAAGGAGAGATG+GGG | + | Chr3:85238588-85238607 | MsG0380016566.01.T01:CDS | 35.0% |
| !! | ACTTTCACTATTGGGTTGAA+TGG | - | Chr3:85239394-85239413 | None:intergenic | 35.0% |
| !! | CAAACCTTTTTAAGGAGAGA+TGG | + | Chr3:85238586-85238605 | MsG0380016566.01.T01:CDS | 35.0% |
| !!! | TTCCTTGGATTCTGTTTTTG+TGG | - | Chr3:85237323-85237342 | None:intergenic | 35.0% |
| AAAAATCGGCGACAAGTATC+TGG | + | Chr3:85239211-85239230 | MsG0380016566.01.T01:CDS | 40.0% | |
| AAACACACCGCTATGTTTCT+TGG | + | Chr3:85237977-85237996 | MsG0380016566.01.T01:intron | 40.0% | |
| AAAGGTAGCAACAGTTTCCT+TGG | - | Chr3:85237338-85237357 | None:intergenic | 40.0% | |
| AACACACCGCTATGTTTCTT+GGG | + | Chr3:85237978-85237997 | MsG0380016566.01.T01:intron | 40.0% | |
| AGTTCAGAAACAGACTTCAC+TGG | + | Chr3:85239244-85239263 | MsG0380016566.01.T01:CDS | 40.0% | |
| CCAATAGTGAAAGTTCACAG+TGG | + | Chr3:85239400-85239419 | MsG0380016566.01.T01:three_prime_UTR | 40.0% | |
| CCACTGTGAACTTTCACTAT+TGG | - | Chr3:85239403-85239422 | None:intergenic | 40.0% | |
| CGTGCAACAAAAACAGTAAC+TGG | - | Chr3:85237383-85237402 | None:intergenic | 40.0% | |
| CTCCTCTTGGTTCAAAATCA+TGG | + | Chr3:85238634-85238653 | MsG0380016566.01.T01:CDS | 40.0% | |
| CTTGTTGAGAAACAGCAAGA+TGG | - | Chr3:85237494-85237513 | None:intergenic | 40.0% | |
| GACCACAAAAACAGAATCCA+AGG | + | Chr3:85237318-85237337 | MsG0380016566.01.T01:five_prime_UTR | 40.0% | |
| GACTACTATCTTGTTCACCA+AGG | + | Chr3:85239160-85239179 | MsG0380016566.01.T01:CDS | 40.0% | |
| GCAAATCAGCAAGACATATG+CGG | - | Chr3:85238307-85238326 | None:intergenic | 40.0% | |
| GGTTCACAGAACACAGTTAT+TGG | - | Chr3:85237937-85237956 | None:intergenic | 40.0% | |
| GTTGCCAAATACCAAATCGT+CGG | - | Chr3:85238387-85238406 | None:intergenic | 40.0% | |
| TTACTCTGCTGAGAGTAGTA+CGG | + | Chr3:85238715-85238734 | MsG0380016566.01.T01:intron | 40.0% | |
| ! | CAAGTCCATGTGGCAAATTT+TGG | - | Chr3:85238076-85238095 | None:intergenic | 40.0% |
| ! | GTGTTGGTGGAATTGAAAAC+AGG | + | Chr3:85237784-85237803 | MsG0380016566.01.T01:intron | 40.0% |
| ! | GTTTTACAGTCTGTAGGAAG+TGG | + | Chr3:85238532-85238551 | MsG0380016566.01.T01:CDS | 40.0% |
| !! | ATTGGGTTGAATGGTAGAGA+TGG | - | Chr3:85239385-85239404 | None:intergenic | 40.0% |
| !! | CATCTTGCTGTTTCTCAACA+AGG | + | Chr3:85237492-85237511 | MsG0380016566.01.T01:CDS | 40.0% |
| CCTCAGCTTCCATTATGATC+TGG | + | Chr3:85238043-85238062 | MsG0380016566.01.T01:intron | 45.0% | |
| CTATCTTGTTCACCAAGGTG+AGG | + | Chr3:85239165-85239184 | MsG0380016566.01.T01:CDS | 45.0% | |
| CTCCCCATCTCTCCTTAAAA+AGG | - | Chr3:85238593-85238612 | None:intergenic | 45.0% | |
| GAGATCATGTCGAGGAATCT+TGG | + | Chr3:85239288-85239307 | MsG0380016566.01.T01:CDS | 45.0% | |
| GATATCGTTGTACCTCACCT+TGG | - | Chr3:85239180-85239199 | None:intergenic | 45.0% | |
| GCATGGTGAAAGTTAGAGTC+TGG | - | Chr3:85238004-85238023 | None:intergenic | 45.0% | |
| GGTGAGGTACAACGATATCT+AGG | + | Chr3:85239181-85239200 | MsG0380016566.01.T01:CDS | 45.0% | |
| TTATATCACACGGCTGCGTT+TGG | - | Chr3:85239362-85239381 | None:intergenic | 45.0% | |
| ! | CCAGATCATAATGGAAGCTG+AGG | - | Chr3:85238046-85238065 | None:intergenic | 45.0% |
| !! | CTTTTTAAGGAGAGATGGGG+AGG | + | Chr3:85238591-85238610 | MsG0380016566.01.T01:CDS | 45.0% |
| !!! | GCTGCTTTTTATGCTCCTCT+TGG | + | Chr3:85238621-85238640 | MsG0380016566.01.T01:CDS | 45.0% |
| !! | AATATATAATTTAATTATCA+AGG | - | Chr3:85239585-85239604 | None:intergenic | 5.0% |
| CAAGATCGATGCGATCGAGT+TGG | + | Chr3:85238675-85238694 | MsG0380016566.01.T01:CDS | 50.0% | |
| CTGTAGGAAGTGGAAGCTCA+TGG | + | Chr3:85238542-85238561 | MsG0380016566.01.T01:CDS | 50.0% | |
| GAGAAACAGCAAGATGGGTG+TGG | - | Chr3:85237488-85237507 | None:intergenic | 50.0% | |
| GCTGAAGAGAGATCATGTCG+AGG | + | Chr3:85239280-85239299 | MsG0380016566.01.T01:CDS | 50.0% | |
| GTCTGGCCCAAGAAACATAG+CGG | - | Chr3:85237987-85238006 | None:intergenic | 50.0% | |
| !! | GGTGTTGGCTTCCTCTTACT+TGG | + | Chr3:85238948-85238967 | MsG0380016566.01.T01:intron | 50.0% |
| !! | TGACCATAGAGCATTGTCCG+AGG | - | Chr3:85238568-85238587 | None:intergenic | 50.0% |
| GAAGTGGAAGCTCATGGCCT+CGG | + | Chr3:85238548-85238567 | MsG0380016566.01.T01:CDS | 55.0% | |
| TGGCCTCGGACAATGCTCTA+TGG | + | Chr3:85238562-85238581 | MsG0380016566.01.T01:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr3 | gene | 85237316 | 85239615 | 85237316 | ID=MsG0380016566.01;Name=MsG0380016566.01 |
| Chr3 | mRNA | 85237316 | 85239615 | 85237316 | ID=MsG0380016566.01.T01;Parent=MsG0380016566.01;Name=MsG0380016566.01.T01;_AED=0.44;_eAED=0.45;_QI=119|0.5|0.66|1|0.5|0.33|3|234|171 |
| Chr3 | exon | 85237316 | 85237513 | 85237316 | ID=MsG0380016566.01.T01:exon:14479;Parent=MsG0380016566.01.T01 |
| Chr3 | exon | 85238514 | 85238700 | 85238514 | ID=MsG0380016566.01.T01:exon:14480;Parent=MsG0380016566.01.T01 |
| Chr3 | exon | 85239132 | 85239615 | 85239132 | ID=MsG0380016566.01.T01:exon:14481;Parent=MsG0380016566.01.T01 |
| Chr3 | five_prime_UTR | 85237316 | 85237434 | 85237316 | ID=MsG0380016566.01.T01:five_prime_utr;Parent=MsG0380016566.01.T01 |
| Chr3 | CDS | 85237435 | 85237513 | 85237435 | ID=MsG0380016566.01.T01:cds;Parent=MsG0380016566.01.T01 |
| Chr3 | CDS | 85238514 | 85238700 | 85238514 | ID=MsG0380016566.01.T01:cds;Parent=MsG0380016566.01.T01 |
| Chr3 | CDS | 85239132 | 85239381 | 85239132 | ID=MsG0380016566.01.T01:cds;Parent=MsG0380016566.01.T01 |
| Chr3 | three_prime_UTR | 85239382 | 85239615 | 85239382 | ID=MsG0380016566.01.T01:three_prime_utr;Parent=MsG0380016566.01.T01 |
| Gene Sequence |
| Protein sequence |
